![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#9329 closed defect (can't reproduce)
Crash in event loop
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.13.6-x86_64-i386-64bit
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [39835]
Path: /Applications/ChimeraX-1.3.app/Contents/MacOS/ChimeraX
Identifier: ChimeraX
Version: 1.3.0 (1.3.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [39835]
User ID: 581685
Date/Time: 2023-07-07 09:54:14.182 +0200
OS Version: Mac OS X 10.13.6 (17G14042)
Report Version: 12
Anonymous UUID: 9D557B09-8913-C4DD-7DC2-2E1A87166C5B
Time Awake Since Boot: 4800000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000048
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x48:
-->
__TEXT 00000001081cd000-00000001081ce000 [ 4K] r-x/r-x SM=COW /Applications/ChimeraX-1.3.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff5d960b66 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff5db2b080 pthread_kill + 333
2 libsystem_c.dylib 0x00007fff5d86e6fe raise + 26
3 libsystem_platform.dylib 0x00007fff5db1ef5a _sigtramp + 26
4 ??? 000000000000000000 0 + 0
5 org.python.python 0x000000010825206d cfunction_call + 125
6 org.python.python 0x00000001082136cc _PyObject_Call + 140
7 QtCore.abi3.so 0x00000001103d0957 PyQtSlot::call(_object*, _object*) const + 39
8 QtCore.abi3.so 0x00000001103d0866 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
9 QtCore.abi3.so 0x00000001103d1455 PyQtSlotProxy::unislot(void**) + 85
10 QtCore.abi3.so 0x00000001103d13ca PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
11 QtCore 0x0000000116c9ab9f QObject::event(QEvent*) + 943
12 QtWidgets 0x00000001176d09ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
13 QtWidgets 0x00000001176d1e11 QApplication::notify(QObject*, QEvent*) + 497
14 QtWidgets.abi3.so 0x0000000117283db9 sipQApplication::notify(QObject*, QEvent*) + 233
15 QtCore 0x0000000116c6fa34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
16 QtCore 0x0000000116c70d79 QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 809
17 libqcocoa.dylib 0x000000012745d259 QCocoaEventDispatcherPrivate::processPostedEvents() + 313
18 libqcocoa.dylib 0x000000012745d9c8 QCocoaEventDispatcherPrivate::postedEventsSourceCallback(void*) + 40
19 com.apple.CoreFoundation 0x00007fff358d4691 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
20 com.apple.CoreFoundation 0x00007fff3598ec8c __CFRunLoopDoSource0 + 108
21 com.apple.CoreFoundation 0x00007fff358b714c __CFRunLoopDoSources0 + 300
22 com.apple.CoreFoundation 0x00007fff358b656d __CFRunLoopRun + 1293
23 com.apple.CoreFoundation 0x00007fff358b5dd3 CFRunLoopRunSpecific + 483
24 com.apple.HIToolbox 0x00007fff34ba0d96 RunCurrentEventLoopInMode + 286
25 com.apple.HIToolbox 0x00007fff34ba0a0f ReceiveNextEventCommon + 366
26 com.apple.HIToolbox 0x00007fff34ba0884 _BlockUntilNextEventMatchingListInModeWithFilter + 64
27 com.apple.AppKit 0x00007fff32e4da3b _DPSNextEvent + 2085
28 com.apple.AppKit 0x00007fff335e3e34 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 3044
29 com.apple.AppKit 0x00007fff32e4284d -[NSApplication run] + 764
30 libqcocoa.dylib 0x000000012745c62f QCocoaEventDispatcher::processEvents(QFlags) + 2495
31 QtCore 0x0000000116c6bacf QEventLoop::exec(QFlags) + 431
32 QtCore 0x0000000116c70042 QCoreApplication::exec() + 130
33 QtWidgets.abi3.so 0x0000000117375702 meth_QApplication_exec_(_object*, _object*) + 82
34 org.python.python 0x000000010825206d cfunction_call + 125
35 org.python.python 0x000000010821317d _PyObject_MakeTpCall + 365
36 org.python.python 0x00000001082eb61c call_function + 876
37 org.python.python 0x00000001082e8ab3 _PyEval_EvalFrameDefault + 25219
38 org.python.python 0x0000000108213948 function_code_fastcall + 104
39 org.python.python 0x000000010821598a method_vectorcall + 202
40 org.python.python 0x00000001082eb58c call_function + 732
41 org.python.python 0x00000001082e8ab3 _PyEval_EvalFrameDefault + 25219
42 org.python.python 0x00000001082ec283 _PyEval_EvalCode + 2611
43 org.python.python 0x00000001082138d1 _PyFunction_Vectorcall + 289
44 org.python.python 0x00000001082eb58c call_function + 732
45 org.python.python 0x00000001082e8b4b _PyEval_EvalFrameDefault + 25371
46 org.python.python 0x00000001082ec283 _PyEval_EvalCode + 2611
47 org.python.python 0x00000001082e270b PyEval_EvalCode + 139
48 org.python.python 0x00000001082df592 builtin_exec + 626
49 org.python.python 0x000000010825186a cfunction_vectorcall_FASTCALL + 218
50 org.python.python 0x00000001082eb58c call_function + 732
51 org.python.python 0x00000001082e8b4b _PyEval_EvalFrameDefault + 25371
52 org.python.python 0x00000001082ec283 _PyEval_EvalCode + 2611
53 org.python.python 0x00000001082138d1 _PyFunction_Vectorcall + 289
54 org.python.python 0x00000001082eb58c call_function + 732
55 org.python.python 0x00000001082e8b4b _PyEval_EvalFrameDefault + 25371
56 org.python.python 0x00000001082ec283 _PyEval_EvalCode + 2611
57 org.python.python 0x00000001082138d1 _PyFunction_Vectorcall + 289
58 org.python.python 0x0000000108351e20 pymain_run_module + 208
59 org.python.python 0x0000000108351537 Py_RunMain + 1431
60 org.python.python 0x0000000108351b3f pymain_main + 223
61 org.python.python 0x0000000108351a4b Py_Main + 43
62 edu.ucsf.cgl.ChimeraX 0x00000001081cddc8 main + 120
63 libdyld.dylib 0x00007fff5d810015 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff5d960a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5db29589 _pthread_cond_wait + 732
2 libopenblas.0.dylib 0x0000000109502a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 2:
0 libsystem_kernel.dylib 0x00007fff5d960a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5db29589 _pthread_cond_wait + 732
2 libopenblas.0.dylib 0x0000000109502a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 3:
0 libsystem_kernel.dylib 0x00007fff5d960a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5db29589 _pthread_cond_wait + 732
2 libopenblas.0.dylib 0x0000000109502a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 4:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff5d961c02 kevent64 + 10
1 QtWebEngineCore 0x000000011b079e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011b079cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011b00262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011afc67cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011b00da94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x000000011b021a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 5:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff5d9571fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d956714 mach_msg + 60
2 QtWebEngineCore 0x000000011b06f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011b017778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011b018150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011b017c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 6:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff5d961c02 kevent64 + 10
1 QtWebEngineCore 0x000000011b079e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011b079cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011b00262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011afc67cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011ef46f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x000000011b021a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 7:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5d9571fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d956714 mach_msg + 60
2 QtWebEngineCore 0x000000011b06f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011b06f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011af971db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011b00262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011afc67cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011b021a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 8:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff5d960a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5db29589 _pthread_cond_wait + 732
2 QtWebEngineCore 0x000000011b066e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x000000011c31e5f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
6 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
7 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 9:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff5d9571fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d956714 mach_msg + 60
2 QtWebEngineCore 0x000000011b06f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011af9720f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000011b00262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x000000011afc67cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x000000011b021a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 10:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff5d961c02 kevent64 + 10
1 QtWebEngineCore 0x000000011b079e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x000000011b079cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000011b00262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000011afc67cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011b021a7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5d9571fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d956714 mach_msg + 60
2 QtWebEngineCore 0x000000011b06f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011b06f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011af971db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011b00262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011afc67cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011b021a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 12:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff5d9571fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d956714 mach_msg + 60
2 QtWebEngineCore 0x000000011b06f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011b06f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011af971db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011b00262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011afc67cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011b021a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 13:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff5d9571fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d956714 mach_msg + 60
2 QtWebEngineCore 0x000000011b06f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011b06f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011b01776a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011b018150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x000000011b017d34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5d9571fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d956714 mach_msg + 60
2 QtWebEngineCore 0x000000011b06f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011b06f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011af971db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011b00262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011afc67cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011b021a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 15:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff5d9571fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d956714 mach_msg + 60
2 QtWebEngineCore 0x000000011b06f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011b06f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011af971db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011b00262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011afc67cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011b021a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff5d9571fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d956714 mach_msg + 60
2 QtWebEngineCore 0x000000011b06f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011b06f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011af971db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000011b00262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000011afc67cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011b021a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
10 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
11 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 17:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff5d9571fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d956714 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff358b7405 __CFRunLoopServiceMachPort + 341
3 com.apple.CoreFoundation 0x00007fff358b6757 __CFRunLoopRun + 1783
4 com.apple.CoreFoundation 0x00007fff358b5dd3 CFRunLoopRunSpecific + 483
5 com.apple.AppKit 0x00007fff32f8afc4 _NSEventThread + 184
6 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
7 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
8 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 18:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff5d9571fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d956714 mach_msg + 60
2 QtWebEngineCore 0x000000011b06f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011b06f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011b01776a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000011b017e3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x000000011b017c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
9 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
10 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 19:
0 libsystem_kernel.dylib 0x00007fff5d960a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5db29589 _pthread_cond_wait + 732
2 libopenblas.0.dylib 0x00000001626552eb blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 20:
0 libsystem_kernel.dylib 0x00007fff5d960a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5db29589 _pthread_cond_wait + 732
2 libopenblas.0.dylib 0x00000001626552eb blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 21:
0 libsystem_kernel.dylib 0x00007fff5d960a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5db29589 _pthread_cond_wait + 732
2 libopenblas.0.dylib 0x00000001626552eb blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
4 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
5 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 22:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5d9571fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d956714 mach_msg + 60
2 QtWebEngineCore 0x000000011b06f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011b017778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011b018150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000011b017cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 23:
0 libsystem_kernel.dylib 0x00007fff5d96128a __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff5db2820e _pthread_wqthread + 1552
2 libsystem_pthread.dylib 0x00007fff5db27be9 start_wqthread + 13
Thread 24:
0 libsystem_pthread.dylib 0x00007fff5db27bdc start_wqthread + 0
1 ??? 0x000000000002790f 0 + 162063
Thread 25:
0 libsystem_pthread.dylib 0x00007fff5db27bdc start_wqthread + 0
1 ??? 0x4058504320000000 0 + 4636544065607827456
Thread 26:
0 libsystem_pthread.dylib 0x00007fff5db27bdc start_wqthread + 0
1 ??? 0x0000000800009000 0 + 34359775232
Thread 27:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff5d9571fa mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff5d956714 mach_msg + 60
2 QtWebEngineCore 0x000000011b06f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011b017778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000011b017e3d base::internal::WorkerThread::RunWorker() + 237
5 QtWebEngineCore 0x000000011b017cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000011b06ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
8 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
9 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 28:
0 libsystem_kernel.dylib 0x00007fff5d960a16 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff5db29589 _pthread_cond_wait + 732
2 org.python.python 0x0000000108341d6c PyThread_acquire_lock_timed + 700
3 org.python.python 0x0000000108390a1f acquire_timed + 111
4 org.python.python 0x0000000108390b30 lock_PyThread_acquire_lock + 48
5 org.python.python 0x000000010821be54 method_vectorcall_VARARGS_KEYWORDS + 388
6 org.python.python 0x00000001082eb58c call_function + 732
7 org.python.python 0x00000001082e8a92 _PyEval_EvalFrameDefault + 25186
8 org.python.python 0x00000001082ec283 _PyEval_EvalCode + 2611
9 org.python.python 0x00000001082138d1 _PyFunction_Vectorcall + 289
10 org.python.python 0x00000001082eb58c call_function + 732
11 org.python.python 0x00000001082e8a92 _PyEval_EvalFrameDefault + 25186
12 org.python.python 0x00000001082ec283 _PyEval_EvalCode + 2611
13 org.python.python 0x00000001082138d1 _PyFunction_Vectorcall + 289
14 org.python.python 0x00000001082eb58c call_function + 732
15 org.python.python 0x00000001082e8a92 _PyEval_EvalFrameDefault + 25186
16 org.python.python 0x0000000108213948 function_code_fastcall + 104
17 org.python.python 0x00000001082eb58c call_function + 732
18 org.python.python 0x00000001082e8a92 _PyEval_EvalFrameDefault + 25186
19 org.python.python 0x0000000108213948 function_code_fastcall + 104
20 org.python.python 0x00000001082eb58c call_function + 732
21 org.python.python 0x00000001082e8a92 _PyEval_EvalFrameDefault + 25186
22 org.python.python 0x0000000108213948 function_code_fastcall + 104
23 org.python.python 0x00000001082159d2 method_vectorcall + 274
24 org.python.python 0x00000001083903c6 t_bootstrap + 70
25 org.python.python 0x00000001083418c9 pythread_wrapper + 25
26 libsystem_pthread.dylib 0x00007fff5db28661 _pthread_body + 340
27 libsystem_pthread.dylib 0x00007fff5db2850d _pthread_start + 377
28 libsystem_pthread.dylib 0x00007fff5db27bf9 thread_start + 13
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x00007fff96246380 rcx: 0x00000001086b6a48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x00000001086b6a80 rsp: 0x00000001086b6a48
r8: 0x00000001086b6f48 r9: 0xffffffff00000000 r10: 0x00007fff962463c8 r11: 0x0000000000000287
r12: 0x0000000000000307 r13: 0x0000000108251ff0 r14: 0x000000000000000b r15: 0x000000000000002d
rip: 0x00007fff5d960b66 rfl: 0x0000000000000286 cr2: 0x00000001083ca13f
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
0x1081cd000 - 0x1081cdff3 +edu.ucsf.cgl.ChimeraX (1.3.0 - 1.3.0.0) /Applications/ChimeraX-1.3.app/Contents/MacOS/ChimeraX
0x1081d7000 - 0x10843bfff +org.python.python (3.9.6, [c] 2001-2019 Python Software Foundation. - 3.9.6) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python
0x10887c000 - 0x10887efff +_heapq.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so
0x1089c6000 - 0x1089caff7 +binascii.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so
0x108a1d000 - 0x108a22fff +zlib.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so
0x108a6c000 - 0x108a6efff +_bz2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so
0x108a77000 - 0x108aa8fff +_lzma.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so
0x108ab7000 - 0x108ab8fff +grp.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/grp.cpython-39-darwin.so
0x108ac1000 - 0x108ac6ff7 +_struct.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_struct.cpython-39-darwin.so
0x108ad3000 - 0x108adbfff +math.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so
0x108ae7000 - 0x108ae8ff7 +_bisect.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so
0x108af0000 - 0x108af1fff +_random.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so
0x108afa000 - 0x108afefff +_sha512.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_sha512.cpython-39-darwin.so
0x108b87000 - 0x108b8cfff +_json.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_json.cpython-39-darwin.so
0x108cd6000 - 0x109091fd7 +_multiarray_umath.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-darwin.so
0x1091ca000 - 0x10cd7c6ef +libopenblas.0.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libopenblas.0.dylib
0x10d01a000 - 0x10d131ff7 +libgfortran.3.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib
0x10d19f000 - 0x10d1d5fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libquadmath.0.dylib
0x10d1e9000 - 0x10d1feff7 +libgcc_s.1.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgcc_s.1.dylib
0x10f24e000 - 0x10f25dfff +_datetime.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_datetime.cpython-39-darwin.so
0x10f2ae000 - 0x10f2c5fff +_pickle.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_pickle.cpython-39-darwin.so
0x10f3d6000 - 0x10f3d8fff +fcntl.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/fcntl.cpython-39-darwin.so
0x10f3e0000 - 0x10f3edfff +_socket.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_socket.cpython-39-darwin.so
0x10f441000 - 0x10f450ff3 +_multiarray_tests.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_tests.cpython-39-darwin.so
0x10f469000 - 0x10f46bfff +_posixsubprocess.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_posixsubprocess.cpython-39-darwin.so
0x10f474000 - 0x10f478ff7 +select.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/select.cpython-39-darwin.so
0x10f553000 - 0x10f564ff7 +_ctypes.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_ctypes.cpython-39-darwin.so
0x10f5bb000 - 0x10f5beffb +lapack_lite.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/lapack_lite.cpython-39-darwin.so
0x10f5cb000 - 0x10f5e6ff3 +_umath_linalg.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/linalg/_umath_linalg.cpython-39-darwin.so
0x10f6bf000 - 0x10f6d2fff +_pocketfft_internal.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/fft/_pocketfft_internal.cpython-39-darwin.so
0x10f71e000 - 0x10f791ffb +mtrand.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/mtrand.cpython-39-darwin.so
0x10f7f4000 - 0x10f813fff +bit_generator.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/bit_generator.cpython-39-darwin.so
0x10f836000 - 0x10f869fff +_common.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_common.cpython-39-darwin.so
0x10f8c7000 - 0x10f8cdff7 +_hashlib.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_hashlib.cpython-39-darwin.so
0x10f8db000 - 0x10f933fff +libssl.1.1.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libssl.1.1.dylib
0x10f962000 - 0x10fb78f4f +libcrypto.1.1.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/libcrypto.1.1.dylib
0x10fc16000 - 0x10fc1cff7 +_blake2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_blake2.cpython-39-darwin.so
0x10fc26000 - 0x10fc79fff +_bounded_integers.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_bounded_integers.cpython-39-darwin.so
0x10fca9000 - 0x10fcb8ff3 +_mt19937.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_mt19937.cpython-39-darwin.so
0x10fccb000 - 0x10fcdaff7 +_philox.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_philox.cpython-39-darwin.so
0x10fcec000 - 0x10fcfbffb +_pcg64.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_pcg64.cpython-39-darwin.so
0x10fd0f000 - 0x10fd16ff7 +_sfc64.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_sfc64.cpython-39-darwin.so
0x10fd27000 - 0x10fdb2fff +_generator.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/random/_generator.cpython-39-darwin.so
0x10fe39000 - 0x10fe39fff +_mac_util.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/_mac_util.so
0x10fe45000 - 0x10fe45fff +_load_libs.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic_lib/_load_libs.cpython-39-darwin.so
0x10fed4000 - 0x10fed4fff +_opcode.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_opcode.cpython-39-darwin.so
0x10ffdc000 - 0x10ffdcfff +_arrays.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/_arrays.cpython-39-darwin.so
0x10ffe3000 - 0x110084ff7 +libarrays.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/lib/libarrays.dylib
0x110168000 - 0x110186ff3 +_geometry.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/geometry/_geometry.cpython-39-darwin.so
0x11029b000 - 0x1103faff7 +QtCore.abi3.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/QtCore.abi3.so
0x110597000 - 0x1105aeff7 +sip.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/sip.cpython-39-darwin.so
0x110645000 - 0x1107aeff3 +QtGui.abi3.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/QtGui.abi3.so
0x11099b000 - 0x1109b4ff3 +QtWebChannel (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtWebChannel.framework/Versions/5/QtWebChannel
0x1109d9000 - 0x110a23adf dyld (551.5) /usr/lib/dyld
0x116a77000 - 0x116fe77df +QtCore (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtCore.framework/Versions/5/QtCore
0x117139000 - 0x1173c9ff7 +QtWidgets.abi3.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/QtWidgets.abi3.so
0x1176c0000 - 0x117b06fff +QtWidgets (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtWidgets.framework/Versions/5/QtWidgets
0x117d03000 - 0x1181ecfff +QtGui (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtGui.framework/Versions/5/QtGui
0x11849f000 - 0x1184c0fff +QtWebEngineWidgets.abi3.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/QtWebEngineWidgets.abi3.so
0x1184f2000 - 0x118515ff7 +QtWebEngineWidgets (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtWebEngineWidgets.framework/Versions/5/QtWebEngineWidgets
0x11854d000 - 0x12023bf4f +QtWebEngineCore (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtWebEngineCore.framework/Versions/5/QtWebEngineCore
0x1248b5000 - 0x124bf9ff7 +QtQuick (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtQuick.framework/Versions/5/QtQuick
0x124e1d000 - 0x124e48ff7 +QtPrintSupport (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtPrintSupport.framework/Versions/5/QtPrintSupport
0x124e76000 - 0x124eceff3 +QtQmlModels (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtQmlModels.framework/Versions/5/QtQmlModels
0x124f0f000 - 0x125267ffb +QtQml (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtQml.framework/Versions/5/QtQml
0x1253db000 - 0x1254ebfff +QtNetwork (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtNetwork.framework/Versions/5/QtNetwork
0x125579000 - 0x1255dffff +QtPositioning (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtPositioning.framework/Versions/5/QtPositioning
0x125611000 - 0x12561dffb +QtQuickWidgets (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtQuickWidgets.framework/Versions/5/QtQuickWidgets
0x12566f000 - 0x125674ff7 +QtWebChannel.abi3.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/QtWebChannel.abi3.so
0x12567f000 - 0x1256e0fff +QtNetwork.abi3.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/QtNetwork.abi3.so
0x1257a1000 - 0x1257b1fff +QtWebEngineCore.abi3.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/QtWebEngineCore.abi3.so
0x1257ca000 - 0x1257eaff7 +QtPrintSupport.abi3.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/QtPrintSupport.abi3.so
0x127423000 - 0x127591fff +libqcocoa.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/plugins/platforms/libqcocoa.dylib
0x127625000 - 0x127684ff3 +QtDBus (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtDBus.framework/Versions/5/QtDBus
0x127c4e000 - 0x127d10ffb com.apple.AMDRadeonX4000GLDriver (1.68.25 - 1.6.8) /System/Library/Extensions/AMDRadeonX4000GLDriver.bundle/Contents/MacOS/AMDRadeonX4000GLDriver
0x127d63000 - 0x127d88fff +libqmacstyle.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/plugins/styles/libqmacstyle.dylib
0x127da8000 - 0x127da8ffb +libpyinstance.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic_lib/lib/libpyinstance.dylib
0x128f47000 - 0x128f68ff7 +_elementpath.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/lxml/_elementpath.cpython-39-darwin.so
0x129097000 - 0x1290c0fff +pyexpat.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/pyexpat.cpython-39-darwin.so
0x129119000 - 0x129120fff +array.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/array.cpython-39-darwin.so
0x1294df000 - 0x12960bfff +libatomstruct.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic_lib/lib/libatomstruct.dylib
0x1296a8000 - 0x1296adfff +libelement.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic_lib/lib/libelement.dylib
0x1296fd000 - 0x12972fff3 +libmolc.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/libmolc.dylib
0x129770000 - 0x1297c8fff +cymol.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/cymol.cpython-39-darwin.so
0x129809000 - 0x129822ff3 +tinyarray.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/tinyarray.cpython-39-darwin.so
0x1298ff000 - 0x129906ff3 +cytmpl.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/cytmpl.cpython-39-darwin.so
0x129996000 - 0x1299aafff +_ssl.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_ssl.cpython-39-darwin.so
0x1299c4000 - 0x1299c4ff7 +_scproxy.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_scproxy.cpython-39-darwin.so
0x129a4c000 - 0x129aceff3 +_map.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/_map.cpython-39-darwin.so
0x129b3c000 - 0x129b60ffb +_surface.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/surface/_surface.cpython-39-darwin.so
0x129cb5000 - 0x129cbdff7 +errorchecker.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/errorchecker.cpython-39-darwin.so
0x129d0c000 - 0x129d36ff7 +arraydatatype.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/arraydatatype.cpython-39-darwin.so
0x129d5a000 - 0x129d8cff3 +wrapper.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/wrapper.cpython-39-darwin.so
0x129db5000 - 0x129dbeff7 +formathandler.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/formathandler.cpython-39-darwin.so
0x129dce000 - 0x129dd5ffb +latebind.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/latebind.cpython-39-darwin.so
0x12a124000 - 0x12a13dff3 +vbo.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/vbo.cpython-39-darwin.so
0x12bc38000 - 0x12bd42ff7 +unicodedata.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/unicodedata.cpython-39-darwin.so
0x12be64000 - 0x12bf9bff7 com.apple.AMDMTLBronzeDriver (1.68.25 - 1.6.8) /System/Library/Extensions/AMDMTLBronzeDriver.bundle/Contents/MacOS/AMDMTLBronzeDriver
0x12c327000 - 0x12db1efff com.apple.AppleIntelKBLGraphicsVADriver (10.36.32 - 10.3.6) /System/Library/Extensions/AppleIntelKBLGraphicsVADriver.bundle/Contents/MacOS/AppleIntelKBLGraphicsVADriver
0x12dbfa000 - 0x12dc91fff com.apple. AMDRadeonVADriver2 (1.68.25 - 1.6.8) /System/Library/Extensions/AMDRadeonVADriver2.bundle/Contents/MacOS/AMDRadeonVADriver2
0x12e369000 - 0x12e370fff +libqgif.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/plugins/imageformats/libqgif.dylib
0x12e379000 - 0x12e380ffb +libqicns.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/plugins/imageformats/libqicns.dylib
0x12e38a000 - 0x12e38ffff +libqico.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/plugins/imageformats/libqico.dylib
0x12e399000 - 0x12e39fffb +libqmacheif.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/plugins/imageformats/libqmacheif.dylib
0x12e3b7000 - 0x12e3b9fff com.apple.AppleIntelKBLGraphicsVAME (10.36.32 - 10.3.6) /System/Library/Extensions/AppleIntelKBLGraphicsVAME.bundle/Contents/MacOS/AppleIntelKBLGraphicsVAME
0x12e5c3000 - 0x12e5c8fff +libqmacjp2.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/plugins/imageformats/libqmacjp2.dylib
0x12e5e7000 - 0x12e64bffb +libqjpeg.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/plugins/imageformats/libqjpeg.dylib
0x12e65b000 - 0x12e660fff +libqsvg.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/plugins/imageformats/libqsvg.dylib
0x12e66a000 - 0x12e66eff7 +libqtga.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/plugins/imageformats/libqtga.dylib
0x12e677000 - 0x12e67bff3 +libqwbmp.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/plugins/imageformats/libqwbmp.dylib
0x12f40e000 - 0x12f420ffb +_ribbons.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/atomic/_ribbons.cpython-39-darwin.so
0x12f4d2000 - 0x12f4d5ff7 +_psutil_posix.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/psutil/_psutil_posix.cpython-39-darwin.so
0x12f6ff000 - 0x12f703ff3 +_graphics.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/_graphics.cpython-39-darwin.so
0x12ff82000 - 0x12ff89ff3 +_psutil_osx.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/psutil/_psutil_osx.cpython-39-darwin.so
0x13011e000 - 0x130152ff7 +QtSvg (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/lib/QtSvg.framework/Versions/5/QtSvg
0x13017b000 - 0x1301e1ffb +libqtiff.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/plugins/imageformats/libqtiff.dylib
0x1301f5000 - 0x13028bff3 +libqwebp.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PyQt5/Qt/plugins/imageformats/libqwebp.dylib
0x1306d1000 - 0x1306ebfff com.apple.security.csparser (3.0 - 58286.70.19) /System/Library/Frameworks/Security.framework/PlugIns/csparser.bundle/Contents/MacOS/csparser
0x13079c000 - 0x13079cffb +_load_libs.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/pdb_lib/_load_libs.cpython-39-darwin.so
0x1307a4000 - 0x1307a9fff +libpdbconnect.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/pdb_lib/lib/libpdbconnect.dylib
0x1309d4000 - 0x1309e4ffb +numpy_formathandler.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/numpy_formathandler.cpython-39-darwin.so
0x134f9f000 - 0x134faeff7 +_version.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/lz4/_version.cpython-39-darwin.so
0x134fbb000 - 0x134fe2ff7 +_frame.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/lz4/frame/_frame.cpython-39-darwin.so
0x134ff4000 - 0x135015ffb +_serialize.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/_serialize.cpython-39-darwin.so
0x135036000 - 0x13504dff7 +_cmsgpack.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/msgpack/_cmsgpack.cpython-39-darwin.so
0x1350a7000 - 0x135106ffb +_imaging.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/_imaging.cpython-39-darwin.so
0x135137000 - 0x13516eff3 +libjpeg.9.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/.dylibs/libjpeg.9.dylib
0x135187000 - 0x13520aff7 +libopenjp2.2.4.0.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/.dylibs/libopenjp2.2.4.0.dylib
0x13521f000 - 0x13523aff7 +libz.1.2.11.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/.dylibs/libz.1.2.11.dylib
0x135247000 - 0x1352deff7 +libtiff.5.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/.dylibs/libtiff.5.dylib
0x1352f7000 - 0x13531eff3 +libxcb.1.1.0.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/.dylibs/libxcb.1.1.0.dylib
0x13533b000 - 0x13536eff7 +liblzma.5.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/.dylibs/liblzma.5.dylib
0x13537f000 - 0x135382ff7 +libXau.6.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/PIL/.dylibs/libXau.6.dylib
0x1366db000 - 0x1366e0ffb +nones_formathandler.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/OpenGL_accelerate/nones_formathandler.cpython-39-darwin.so
0x137a08000 - 0x137a09ff7 +_zeros.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/_zeros.cpython-39-darwin.so
0x137ad1000 - 0x137b38ff7 +mmcif.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/mmcif/mmcif.cpython-39-darwin.so
0x137b7b000 - 0x137bd6ff3 +_mmcif.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/mmcif/_mmcif.cpython-39-darwin.so
0x137c82000 - 0x137cadffb +_pdbio.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/pdb/_pdbio.cpython-39-darwin.so
0x1388f9000 - 0x1388fbff7 com.apple.CloudDocsFileProvider (1.0 - 575.14) /System/Library/PrivateFrameworks/FileProvider.framework/OverrideBundles/CloudDocsFileProvider.bundle/Contents/MacOS/CloudDocsFileProvider
0x138900000 - 0x138903fff com.apple.FileProviderOverride (125.15 - 125.15) /System/Library/PrivateFrameworks/FileProvider.framework/OverrideBundles/FileProviderOverride.bundle/Contents/MacOS/FileProviderOverride
0x138909000 - 0x13890ffff com.apple.FinderSyncCollaborationFileProviderOverride (1.0 - 1054.6.1) /System/Library/PrivateFrameworks/FileProvider.framework/OverrideBundles/FinderSyncCollaborationFileProviderOverride.bundle/Contents/MacOS/FinderSyncCollaborationFileProviderOverride
0x13aa27000 - 0x13aa2aff7 +_comb.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/special/_comb.cpython-39-darwin.so
0x14069b000 - 0x14069effb +_lsap_module.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/_lsap_module.cpython-39-darwin.so
0x145a30000 - 0x145a33ff3 +_highs_constants.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/_highs/_highs_constants.cpython-39-darwin.so
0x146970000 - 0x146977fff +minpack2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/minpack2.cpython-39-darwin.so
0x146e30000 - 0x146e3cfff +_ccallback_c.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/_lib/_ccallback_c.cpython-39-darwin.so
0x146ecf000 - 0x146edbff7 +_flinalg.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/_flinalg.cpython-39-darwin.so
0x14c3ce000 - 0x14c418ff7 +_decimal.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_decimal.cpython-39-darwin.so
0x14c494000 - 0x14c499ffb +messagestream.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/_lib/messagestream.cpython-39-darwin.so
0x14d92d000 - 0x14dabfffb +etree.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/lxml/etree.cpython-39-darwin.so
0x158e0a000 - 0x158e1fff7 +libgcc_s.1.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/.dylibs/libgcc_s.1.dylib
0x159510000 - 0x159524fff +_ufuncs_cxx.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/special/_ufuncs_cxx.cpython-39-darwin.so
0x15a987000 - 0x15aa9eff7 +libgfortran.3.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/.dylibs/libgfortran.3.dylib
0x15ab0c000 - 0x15ab42fff +libquadmath.0.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/.dylibs/libquadmath.0.dylib
0x15bea5000 - 0x15bf1dff3 +_csparsetools.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/_csparsetools.cpython-39-darwin.so
0x15bf97000 - 0x15bfe8ff3 +_shortest_path.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/csgraph/_shortest_path.cpython-39-darwin.so
0x15c017000 - 0x15c033ff3 +_tools.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/csgraph/_tools.cpython-39-darwin.so
0x15c04d000 - 0x15c065ff7 +_traversal.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/csgraph/_traversal.cpython-39-darwin.so
0x15c07a000 - 0x15c086ffb +_ellip_harm_2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/special/_ellip_harm_2.cpython-39-darwin.so
0x15c2d9000 - 0x15c2f7ffb +_min_spanning_tree.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/csgraph/_min_spanning_tree.cpython-39-darwin.so
0x15c311000 - 0x15c339ffb +_flow.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/csgraph/_flow.cpython-39-darwin.so
0x15c35a000 - 0x15c38affb +_matching.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/csgraph/_matching.cpython-39-darwin.so
0x15c3ad000 - 0x15c3d7ffb +_reordering.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/csgraph/_reordering.cpython-39-darwin.so
0x15c438000 - 0x15c466ff7 +_iterative.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/linalg/isolve/_iterative.cpython-39-darwin.so
0x15cfe2000 - 0x15d03ffff +_fblas.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/_fblas.cpython-39-darwin.so
0x15d07e000 - 0x15d1affff +_flapack.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/_flapack.cpython-39-darwin.so
0x15d2bd000 - 0x15d2e2ffb +_solve_toeplitz.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/_solve_toeplitz.cpython-39-darwin.so
0x15d33f000 - 0x15d35eff7 +_matfuncs_sqrtm_triu.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/_matfuncs_sqrtm_triu.cpython-39-darwin.so
0x15d378000 - 0x15d383ff7 +_group_columns.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/_group_columns.cpython-39-darwin.so
0x15d7ee000 - 0x15d823ff7 +_decomp_update.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/_decomp_update.cpython-39-darwin.so
0x15d83e000 - 0x15d863ff7 +cython_blas.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/cython_blas.cpython-39-darwin.so
0x15d885000 - 0x15d8edfff +cython_lapack.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/cython_lapack.cpython-39-darwin.so
0x15d991000 - 0x15d9aefff +_lbfgsb.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/_lbfgsb.cpython-39-darwin.so
0x15da75000 - 0x15dac5ff3 +_superlu.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/linalg/dsolve/_superlu.cpython-39-darwin.so
0x15dae2000 - 0x15db68fff +_arpack.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/linalg/eigen/arpack/_arpack.cpython-39-darwin.so
0x15e9df000 - 0x15eb65fe7 +_ufuncs.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/special/_ufuncs.cpython-39-darwin.so
0x15f041000 - 0x15f0fbfdf +specfun.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/special/specfun.cpython-39-darwin.so
0x15f152000 - 0x15f187ff7 +_trlib.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/_trlib/_trlib.cpython-39-darwin.so
0x15f1e8000 - 0x15f1f2ffb +moduleTNC.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/moduleTNC.cpython-39-darwin.so
0x15f1fa000 - 0x15f217fff +_cobyla.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/_cobyla.cpython-39-darwin.so
0x15f222000 - 0x15f240ff7 +_slsqp.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/_slsqp.cpython-39-darwin.so
0x15f24b000 - 0x15f268ff7 +_minpack.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/_minpack.cpython-39-darwin.so
0x15f2b2000 - 0x15f2cbfff +givens_elimination.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/_lsq/givens_elimination.cpython-39-darwin.so
0x15f2e1000 - 0x15f2e9ff7 +__nnls.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/__nnls.cpython-39-darwin.so
0x161d1e000 - 0x1621dcffb +_sparsetools.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/sparse/_sparsetools.cpython-39-darwin.so
0x16231c000 - 0x165d5d037 +libopenblas.0.dylib (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/.dylibs/libopenblas.0.dylib
0x16c092000 - 0x16c217fff +_highs_wrapper.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/_highs/_highs_wrapper.cpython-39-darwin.so
0x16c2e1000 - 0x16c383fff +_interpolative.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/linalg/_interpolative.cpython-39-darwin.so
0x16c3b0000 - 0x16c3ddff7 +_bglu_dense.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/optimize/_bglu_dense.cpython-39-darwin.so
0x16c440000 - 0x16c4ccff3 +ckdtree.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/spatial/ckdtree.cpython-39-darwin.so
0x16c517000 - 0x16c5eeff3 +qhull.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/spatial/qhull.cpython-39-darwin.so
0x16c63c000 - 0x16c656ff3 +_voronoi.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/spatial/_voronoi.cpython-39-darwin.so
0x16c6ad000 - 0x16c6bcff3 +_distance_wrap.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/spatial/_distance_wrap.cpython-39-darwin.so
0x16c6cc000 - 0x16c6e7ff3 +_hausdorff.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/spatial/_hausdorff.cpython-39-darwin.so
0x16c6ff000 - 0x16c735ff7 +_distance_pybind.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/spatial/_distance_pybind.cpython-39-darwin.so
0x16c79d000 - 0x16c809ff7 +rotation.cpython-39-darwin.so (0) /Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/scipy/spatial/transform/rotation.cpython-39-darwin.so
0x7fff2dde4000 - 0x7fff2e132ff7 com.apple.RawCamera.bundle (8.05.0 - 1017.4.1) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff2e37a000 - 0x7fff2ebd0ff7 ATIRadeonX4000SCLib.dylib (1.68.25) /System/Library/Extensions/AMDRadeonX4000GLDriver.bundle/Contents/MacOS/ATIRadeonX4000SCLib.dylib
0x7fff31a01000 - 0x7fff31a05ffb com.apple.agl (3.3.1 - AGL-3.3.1) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff31a06000 - 0x7fff31be6ff3 com.apple.avfoundation (2.0 - 1536.36) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff31be7000 - 0x7fff31ca0fff com.apple.audio.AVFAudio (1.0 - ???) /System/Library/Frameworks/AVFoundation.framework/Versions/A/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff31da6000 - 0x7fff31da6fff com.apple.Accelerate (1.11 - Accelerate 1.11) /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
0x7fff31da7000 - 0x7fff31dbdfef libCGInterfaces.dylib (417.2) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff31dbe000 - 0x7fff322bcfc3 com.apple.vImage (8.1 - ???) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
0x7fff322bd000 - 0x7fff32417fe3 libBLAS.dylib (1211.50.2) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
0x7fff32418000 - 0x7fff32446fef libBNNS.dylib (38.1) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBNNS.dylib
0x7fff32447000 - 0x7fff32806ff7 libLAPACK.dylib (1211.50.2) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
0x7fff32807000 - 0x7fff3281cff7 libLinearAlgebra.dylib (1211.50.2) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLinearAlgebra.dylib
0x7fff3281d000 - 0x7fff32822ff3 libQuadrature.dylib (3) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libQuadrature.dylib
0x7fff32823000 - 0x7fff328a3fff libSparse.dylib (79.50.2) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparse.dylib
0x7fff328a4000 - 0x7fff328b7fff libSparseBLAS.dylib (1211.50.2) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparseBLAS.dylib
0x7fff328b8000 - 0x7fff32a65fc3 libvDSP.dylib (622.50.5) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib
0x7fff32a66000 - 0x7fff32b17fff libvMisc.dylib (622.50.5) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
0x7fff32b18000 - 0x7fff32b18fff com.apple.Accelerate.vecLib (3.11 - vecLib 3.11) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
0x7fff32b19000 - 0x7fff32b73ff7 com.apple.Accounts (113 - 113) /System/Library/Frameworks/Accounts.framework/Versions/A/Accounts
0x7fff32b74000 - 0x7fff32e0bff7 com.apple.AddressBook.framework (11.0 - 1808.8) /System/Library/Frameworks/AddressBook.framework/Versions/A/AddressBook
0x7fff32e0c000 - 0x7fff33c6afff com.apple.AppKit (6.9 - 1561.61.100) /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x7fff33cbc000 - 0x7fff33cbcfff com.apple.ApplicationServices (48 - 50) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
0x7fff33cbd000 - 0x7fff33d23fff com.apple.ApplicationServices.ATS (377 - 445.5) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
0x7fff33dbc000 - 0x7fff33edeff7 libFontParser.dylib (222.1.9) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib
0x7fff33edf000 - 0x7fff33f2aff7 libFontRegistry.dylib (221.6) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistry.dylib
0x7fff33f7c000 - 0x7fff33f81fff libFontRegistryUI.dylib (221.6) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontRegistryUI.dylib
0x7fff33fcf000 - 0x7fff34002ff7 libTrueTypeScaler.dylib (222.1.9) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libTrueTypeScaler.dylib
0x7fff3406c000 - 0x7fff34070ff3 com.apple.ColorSyncLegacy (4.13.0 - 1) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSyncLegacy.framework/Versions/A/ColorSyncLegacy
0x7fff34110000 - 0x7fff34162ffb com.apple.HIServices (1.22 - 625) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/HIServices.framework/Versions/A/HIServices
0x7fff34163000 - 0x7fff34171fff com.apple.LangAnalysis (1.7.0 - 1.7.0) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/LangAnalysis.framework/Versions/A/LangAnalysis
0x7fff34172000 - 0x7fff341befff com.apple.print.framework.PrintCore (13.4 - 503.2) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/PrintCore.framework/Versions/A/PrintCore
0x7fff341bf000 - 0x7fff341f9fff com.apple.QD (3.12 - 404.2) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/QD.framework/Versions/A/QD
0x7fff341fa000 - 0x7fff34206fff com.apple.speech.synthesis.framework (7.8.1 - 7.8.1) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/SpeechSynthesis.framework/Versions/A/SpeechSynthesis
0x7fff34207000 - 0x7fff34495ff7 com.apple.audio.toolbox.AudioToolbox (1.14 - 1.14) /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox
0x7fff34497000 - 0x7fff34497fff com.apple.audio.units.AudioUnit (1.14 - 1.14) /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x7fff347ba000 - 0x7fff34b57fff com.apple.CFNetwork (902.6 - 902.6) /System/Library/Frameworks/CFNetwork.framework/Versions/A/CFNetwork
0x7fff34b6c000 - 0x7fff34b6cfff com.apple.Carbon (158 - 158) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff34b6d000 - 0x7fff34b70ffb com.apple.CommonPanels (1.2.6 - 98) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x7fff34b71000 - 0x7fff34e76fff com.apple.HIToolbox (2.1.1 - 911.10) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HIToolbox.framework/Versions/A/HIToolbox
0x7fff34e77000 - 0x7fff34e7affb com.apple.help (1.3.8 - 66) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help
0x7fff34e7b000 - 0x7fff34e80fff com.apple.ImageCapture (9.0 - 9.0) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff34e81000 - 0x7fff34f16ffb com.apple.ink.framework (10.9 - 221) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff34f17000 - 0x7fff34f31ff7 com.apple.openscripting (1.7 - 174) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x7fff34f52000 - 0x7fff34f53fff com.apple.print.framework.Print (12 - 267) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff34f54000 - 0x7fff34f56ff7 com.apple.securityhi (9.0 - 55006) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x7fff34f57000 - 0x7fff34f5dfff com.apple.speech.recognition.framework (6.0.3 - 6.0.3) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
0x7fff34f5e000 - 0x7fff3507dfff com.apple.cloudkit.CloudKit (736.16 - 736.16) /System/Library/Frameworks/CloudKit.framework/Versions/A/CloudKit
0x7fff3507e000 - 0x7fff3507efff com.apple.Cocoa (6.11 - 22) /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x7fff3508c000 - 0x7fff35145fff com.apple.ColorSync (4.13.0 - 3325) /System/Library/Frameworks/ColorSync.framework/Versions/A/ColorSync
0x7fff352d2000 - 0x7fff35365ff7 com.apple.audio.CoreAudio (4.3.0 - 4.3.0) /System/Library/Frameworks/CoreAudio.framework/Versions/A/CoreAudio
0x7fff353cc000 - 0x7fff353f5ffb com.apple.CoreBluetooth (1.0 - 1) /System/Library/Frameworks/CoreBluetooth.framework/Versions/A/CoreBluetooth
0x7fff353f6000 - 0x7fff3574cfef com.apple.CoreData (120 - 851) /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
0x7fff3574d000 - 0x7fff35830fff com.apple.CoreDisplay (99.14 - 99.14) /System/Library/Frameworks/CoreDisplay.framework/Versions/A/CoreDisplay
0x7fff35831000 - 0x7fff35cd4fe7 com.apple.CoreFoundation (6.9 - 1455.300) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
0x7fff35cd6000 - 0x7fff362e6fef com.apple.CoreGraphics (2.0 - 1161.21.5) /System/Library/Frameworks/CoreGraphics.framework/Versions/A/CoreGraphics
0x7fff362e8000 - 0x7fff365d7fff com.apple.CoreImage (13.0.0 - 579.5) /System/Library/Frameworks/CoreImage.framework/Versions/A/CoreImage
0x7fff365d8000 - 0x7fff36643ff7 com.apple.corelocation (2245.0.41) /System/Library/Frameworks/CoreLocation.framework/Versions/A/CoreLocation
0x7fff36644000 - 0x7fff36689fff com.apple.audio.midi.CoreMIDI (1.10 - 88) /System/Library/Frameworks/CoreMIDI.framework/Versions/A/CoreMIDI
0x7fff36866000 - 0x7fff3695cffb com.apple.CoreMedia (1.0 - 2276.80.4) /System/Library/Frameworks/CoreMedia.framework/Versions/A/CoreMedia
0x7fff3695d000 - 0x7fff369abfff com.apple.CoreMediaIO (814.0 - 4995) /System/Library/Frameworks/CoreMediaIO.framework/Versions/A/CoreMediaIO
0x7fff369ac000 - 0x7fff369acfff com.apple.CoreServices (822.37 - 822.37) /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices
0x7fff369ad000 - 0x7fff36a21ffb com.apple.AE (735.2 - 735.2) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/AE.framework/Versions/A/AE
0x7fff36a22000 - 0x7fff36cf9fff com.apple.CoreServices.CarbonCore (1178.4.2 - 1178.4.2) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
0x7fff36cfa000 - 0x7fff36d2efff com.apple.DictionaryServices (1.2 - 284.2) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/DictionaryServices.framework/Versions/A/DictionaryServices
0x7fff36d2f000 - 0x7fff36d37ffb com.apple.CoreServices.FSEvents (1239.50.2 - 1239.50.2) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/FSEvents.framework/Versions/A/FSEvents
0x7fff36d38000 - 0x7fff36ef6ff7 com.apple.LaunchServices (822.37 - 822.37) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/LaunchServices.framework/Versions/A/LaunchServices
0x7fff36ef7000 - 0x7fff36fa7fff com.apple.Metadata (10.7.0 - 1191.8) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/Metadata.framework/Versions/A/Metadata
0x7fff36fa8000 - 0x7fff37008fff com.apple.CoreServices.OSServices (822.37 - 822.37) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
0x7fff37009000 - 0x7fff37077fff com.apple.SearchKit (1.4.0 - 1.4.0) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SearchKit.framework/Versions/A/SearchKit
0x7fff37078000 - 0x7fff3709cffb com.apple.coreservices.SharedFileList (71.21 - 71.21) /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList
0x7fff3733d000 - 0x7fff3748dfff com.apple.CoreText (352.0 - 578.23) /System/Library/Frameworks/CoreText.framework/Versions/A/CoreText
0x7fff3748e000 - 0x7fff374c8fff com.apple.CoreVideo (1.8 - 0.0) /System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo
0x7fff374c9000 - 0x7fff37554ff3 com.apple.framework.CoreWLAN (13.0 - 1350.2) /System/Library/Frameworks/CoreWLAN.framework/Versions/A/CoreWLAN
0x7fff376e2000 - 0x7fff376edff7 com.apple.DirectoryService.Framework (10.13 - 207.50.1) /System/Library/Frameworks/DirectoryService.framework/Versions/A/DirectoryService
0x7fff376ee000 - 0x7fff377a8fff com.apple.DiscRecording (9.0.3 - 9030.4.5) /System/Library/Frameworks/DiscRecording.framework/Versions/A/DiscRecording
0x7fff377cf000 - 0x7fff377d4fff com.apple.DiskArbitration (2.7 - 2.7) /System/Library/Frameworks/DiskArbitration.framework/Versions/A/DiskArbitration
0x7fff37992000 - 0x7fff37994ff7 com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff37995000 - 0x7fff37d5cffb com.apple.Foundation (6.9 - 1455.300) /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation
0x7fff37dcd000 - 0x7fff37dfdff3 com.apple.GSS (4.0 - 2.0) /System/Library/Frameworks/GSS.framework/Versions/A/GSS
0x7fff37dfe000 - 0x7fff37e16ff3 com.apple.GameController (1.0 - 1) /System/Library/Frameworks/GameController.framework/Versions/A/GameController
0x7fff37f0f000 - 0x7fff38013ffb com.apple.Bluetooth (6.0.7 - 6.0.7f22) /System/Library/Frameworks/IOBluetooth.framework/Versions/A/IOBluetooth
0x7fff38073000 - 0x7fff3810efff com.apple.framework.IOKit (2.0.2 - 1445.71.6) /System/Library/Frameworks/IOKit.framework/Versions/A/IOKit
0x7fff38110000 - 0x7fff38117fff com.apple.IOSurface (211.15 - 211.15) /System/Library/Frameworks/IOSurface.framework/Versions/A/IOSurface
0x7fff38118000 - 0x7fff3816dff3 com.apple.ImageCaptureCore (7.0 - 7.0) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3816e000 - 0x7fff382e9fe7 com.apple.ImageIO.framework (3.3.0 - 1739.3.8) /System/Library/Frameworks/ImageIO.framework/Versions/A/ImageIO
0x7fff382ea000 - 0x7fff382eeffb libGIF.dylib (1739.3.8) /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libGIF.dylib
0x7fff382ef000 - 0x7fff383d6fe7 libJP2.dylib (1739.3.8) /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJP2.dylib
0x7fff383d7000 - 0x7fff383faff7 libJPEG.dylib (1739.3.8) /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libJPEG.dylib
0x7fff386e9000 - 0x7fff3870ffeb libPng.dylib (1739.3.8) /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libPng.dylib
0x7fff38710000 - 0x7fff38712ffb libRadiance.dylib (1739.3.8) /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libRadiance.dylib
0x7fff38713000 - 0x7fff38761fe7 libTIFF.dylib (1739.3.8) /System/Library/Frameworks/ImageIO.framework/Versions/A/Resources/libTIFF.dylib
0x7fff3891d000 - 0x7fff39603fff com.apple.JavaScriptCore (13605 - 13605.3.8) /System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore
0x7fff3961b000 - 0x7fff39634ff7 com.apple.Kerberos (3.0 - 1) /System/Library/Frameworks/Kerberos.framework/Versions/A/Kerberos
0x7fff39635000 - 0x7fff3966afff com.apple.LDAPFramework (2.4.28 - 194.5) /System/Library/Frameworks/LDAP.framework/Versions/A/LDAP
0x7fff396b4000 - 0x7fff396d2ffb com.apple.CoreAuthentication.SharedUtils (1.0 - 425.70.2) /System/Library/Frameworks/LocalAuthentication.framework/Support/SharedUtils.framework/Versions/A/SharedUtils
0x7fff396d3000 - 0x7fff396e9ff7 com.apple.LocalAuthentication (1.0 - 425.70.2) /System/Library/Frameworks/LocalAuthentication.framework/Versions/A/LocalAuthentication
0x7fff398f3000 - 0x7fff398fafff com.apple.MediaAccessibility (1.0 - 114) /System/Library/Frameworks/MediaAccessibility.framework/Versions/A/MediaAccessibility
0x7fff39910000 - 0x7fff399a9fff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff399aa000 - 0x7fff3a014ff7 com.apple.MediaToolbox (1.0 - 2276.80.4) /System/Library/Frameworks/MediaToolbox.framework/Versions/A/MediaToolbox
0x7fff3a016000 - 0x7fff3a097fff com.apple.Metal (125.30 - 125.30) /System/Library/Frameworks/Metal.framework/Versions/A/Metal
0x7fff3a0b4000 - 0x7fff3a0cffff com.apple.MetalPerformanceShaders.MPSCore (1.0 - 1) /System/Library/Frameworks/MetalPerformanceShaders.framework/Frameworks/MPSCore.framework/Versions/A/MPSCore
0x7fff3a0d0000 - 0x7fff3a13ffef com.apple.MetalPerformanceShaders.MPSImage (1.0 - 1) /System/Library/Frameworks/MetalPerformanceShaders.framework/Frameworks/MPSImage.framework/Versions/A/MPSImage
0x7fff3a140000 - 0x7fff3a164fff com.apple.MetalPerformanceShaders.MPSMatrix (1.0 - 1) /System/Library/Frameworks/MetalPerformanceShaders.framework/Frameworks/MPSMatrix.framework/Versions/A/MPSMatrix
0x7fff3a165000 - 0x7fff3a24cff7 com.apple.MetalPerformanceShaders.MPSNeuralNetwork (1.0 - 1) /System/Library/Frameworks/MetalPerformanceShaders.framework/Frameworks/MPSNeuralNetwork.framework/Versions/A/MPSNeuralNetwork
0x7fff3a24d000 - 0x7fff3a24dff7 com.apple.MetalPerformanceShaders.MetalPerformanceShaders (1.0 - 1) /System/Library/Frameworks/MetalPerformanceShaders.framework/Versions/A/MetalPerformanceShaders
0x7fff3b24c000 - 0x7fff3b258ffb com.apple.NetFS (6.0 - 4.0) /System/Library/Frameworks/NetFS.framework/Versions/A/NetFS
0x7fff3e041000 - 0x7fff3e049fef libcldcpuengine.dylib (2.8.7) /System/Library/Frameworks/OpenCL.framework/Versions/A/Libraries/libcldcpuengine.dylib
0x7fff3e04a000 - 0x7fff3e0a4ff7 com.apple.opencl (2.8.24 - 2.8.24) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff3e0a5000 - 0x7fff3e0c1ffb com.apple.CFOpenDirectory (10.13 - 207.50.1) /System/Library/Frameworks/OpenDirectory.framework/Versions/A/Frameworks/CFOpenDirectory.framework/Versions/A/CFOpenDirectory
0x7fff3e0c2000 - 0x7fff3e0cdfff com.apple.OpenDirectory (10.13 - 207.50.1) /System/Library/Frameworks/OpenDirectory.framework/Versions/A/OpenDirectory
0x7fff3f24c000 - 0x7fff3f24efff libCVMSPluginSupport.dylib (16.7.4) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff3f24f000 - 0x7fff3f254ffb libCoreFSCache.dylib (162.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff3f255000 - 0x7fff3f259fff libCoreVMClient.dylib (162.12) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff3f25a000 - 0x7fff3f263ff3 libGFXShared.dylib (16.7.4) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff3f264000 - 0x7fff3f26ffff libGL.dylib (16.7.4) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff3f270000 - 0x7fff3f2abfe7 libGLImage.dylib (16.7.4) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff3f2ac000 - 0x7fff3f419ff3 libGLProgrammability.dylib (16.7.4) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff3f41a000 - 0x7fff3f458ffb libGLU.dylib (16.7.4) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff3fdd0000 - 0x7fff3fddfff3 com.apple.opengl (16.7.4 - 16.7.4) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff3fde0000 - 0x7fff3ff77ff3 GLEngine (16.7.4) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff3ff78000 - 0x7fff3ffa0ffb GLRendererFloat (16.7.4) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff4015e000 - 0x7fff402aaff7 com.apple.QTKit (7.7.3 - 3014.8) /System/Library/Frameworks/QTKit.framework/Versions/A/QTKit
0x7fff402ab000 - 0x7fff40510ff7 com.apple.imageKit (3.0 - 1043) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff40511000 - 0x7fff40600ff3 com.apple.PDFKit (1.0 - 677.68) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff40601000 - 0x7fff40b13ff7 com.apple.QuartzComposer (5.1 - 364) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff40b14000 - 0x7fff40b37fff com.apple.quartzfilters (1.10.0 - 1.10.0) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff40b38000 - 0x7fff40c31ff7 com.apple.QuickLookUIFramework (5.0 - 743.13) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
0x7fff40c32000 - 0x7fff40c32fff com.apple.quartzframework (1.5 - 21) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff40c33000 - 0x7fff40e7fff7 com.apple.QuartzCore (1.11 - 584.64.2) /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
0x7fff40e80000 - 0x7fff40ed7ff7 com.apple.QuickLookFramework (5.0 - 743.13) /System/Library/Frameworks/QuickLook.framework/Versions/A/QuickLook
0x7fff4109d000 - 0x7fff410b7ffb com.apple.SafariServices.framework (13609 - 13609.3.5.1.5) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff416b7000 - 0x7fff419e2fff com.apple.security (7.0 - 58286.70.19) /System/Library/Frameworks/Security.framework/Versions/A/Security
0x7fff419e3000 - 0x7fff41a6fff7 com.apple.securityfoundation (6.0 - 55185.50.5) /System/Library/Frameworks/SecurityFoundation.framework/Versions/A/SecurityFoundation
0x7fff41a70000 - 0x7fff41aa0fff com.apple.securityinterface (10.0 - 55109.50.6) /System/Library/Frameworks/SecurityInterface.framework/Versions/A/SecurityInterface
0x7fff41aa1000 - 0x7fff41aa5ffb com.apple.xpc.ServiceManagement (1.0 - 1) /System/Library/Frameworks/ServiceManagement.framework/Versions/A/ServiceManagement
0x7fff41e4a000 - 0x7fff41ebaff3 com.apple.SystemConfiguration (1.17 - 1.17) /System/Library/Frameworks/SystemConfiguration.framework/Versions/A/SystemConfiguration
0x7fff4206f000 - 0x7fff423eafff com.apple.VideoToolbox (1.0 - 2276.80.4) /System/Library/Frameworks/VideoToolbox.framework/Versions/A/VideoToolbox
0x7fff42692000 - 0x7fff42bf1feb libwebrtc.dylib (7605.3.8) /System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/WebCore.framework/Versions/A/Frameworks/libwebrtc.dylib
0x7fff42bf2000 - 0x7fff442c5ff7 com.apple.WebCore (13605 - 13605.3.8) /System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/WebCore.framework/Versions/A/WebCore
0x7fff442c6000 - 0x7fff444adff7 com.apple.WebKitLegacy (13605 - 13605.3.8) /System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/WebKitLegacy.framework/Versions/A/WebKitLegacy
0x7fff444ae000 - 0x7fff44947fff com.apple.WebKit (13605 - 13605.3.8) /System/Library/Frameworks/WebKit.framework/Versions/A/WebKit
0x7fff44db7000 - 0x7fff44e4aff3 com.apple.APFS (1.0 - 1) /System/Library/PrivateFrameworks/APFS.framework/Versions/A/APFS
0x7fff45a77000 - 0x7fff45a9ffff com.apple.framework.Apple80211 (13.0 - 1370.4) /System/Library/PrivateFrameworks/Apple80211.framework/Versions/A/Apple80211
0x7fff45aa1000 - 0x7fff45ab0fef com.apple.AppleFSCompression (96.60.1 - 1.0) /System/Library/PrivateFrameworks/AppleFSCompression.framework/Versions/A/AppleFSCompression
0x7fff45ab1000 - 0x7fff45b9bfff com.apple.AppleGVAFramework (11.6.8 - 11.6.8) /System/Library/PrivateFrameworks/AppleGVA.framework/Versions/A/AppleGVA
0x7fff45baf000 - 0x7fff45bbaff7 com.apple.AppleIDAuthSupport (1.0 - 1) /System/Library/PrivateFrameworks/AppleIDAuthSupport.framework/Versions/A/AppleIDAuthSupport
0x7fff45bf4000 - 0x7fff45c3cff3 com.apple.AppleJPEG (1.0 - 1) /System/Library/PrivateFrameworks/AppleJPEG.framework/Versions/A/AppleJPEG
0x7fff45c4f000 - 0x7fff45c6dff3 com.apple.aps.framework (4.0 - 4.0) /System/Library/PrivateFrameworks/ApplePushService.framework/Versions/A/ApplePushService
0x7fff45c6e000 - 0x7fff45c76ff3 com.apple.AppleSRP (5.0 - 1) /System/Library/PrivateFrameworks/AppleSRP.framework/Versions/A/AppleSRP
0x7fff45c77000 - 0x7fff45c9ffff com.apple.applesauce (1.0 - ???) /System/Library/PrivateFrameworks/AppleSauce.framework/Versions/A/AppleSauce
0x7fff45d68000 - 0x7fff45d6bfff com.apple.AppleSystemInfo (3.1.5 - 3.1.5) /System/Library/PrivateFrameworks/AppleSystemInfo.framework/Versions/A/AppleSystemInfo
0x7fff45d6c000 - 0x7fff45dbcff7 com.apple.AppleVAFramework (5.0.41 - 5.0.41) /System/Library/PrivateFrameworks/AppleVA.framework/Versions/A/AppleVA
0x7fff460f2000 - 0x7fff4638bffb com.apple.AuthKit (1.0 - 1) /System/Library/PrivateFrameworks/AuthKit.framework/Versions/A/AuthKit
0x7fff464c2000 - 0x7fff464c9ff7 com.apple.coreservices.BackgroundTaskManagement (1.0 - 57.1) /System/Library/PrivateFrameworks/BackgroundTaskManagement.framework/Versions/A/BackgroundTaskManagement
0x7fff464ca000 - 0x7fff46551ff7 com.apple.backup.framework (1.9.6 - 1.9.6) /System/Library/PrivateFrameworks/Backup.framework/Versions/A/Backup
0x7fff4655a000 - 0x7fff46560ff7 com.apple.BezelServicesFW (305.1 - 305.1) /System/Library/PrivateFrameworks/BezelServices.framework/Versions/A/BezelServices
0x7fff465cb000 - 0x7fff46607fff com.apple.bom (14.0 - 194.2.4) /System/Library/PrivateFrameworks/Bom.framework/Versions/A/Bom
0x7fff46c3b000 - 0x7fff46c68ffb com.apple.CalendarAgentLink (8.0 - 250) /System/Library/PrivateFrameworks/CalendarAgentLink.framework/Versions/A/CalendarAgentLink
0x7fff47335000 - 0x7fff47384ff3 com.apple.ChunkingLibrary (189 - 189) /System/Library/PrivateFrameworks/ChunkingLibrary.framework/Versions/A/ChunkingLibrary
0x7fff4738b000 - 0x7fff4741cff7 com.apple.CloudDocs (1.0 - 575.14) /System/Library/PrivateFrameworks/CloudDocs.framework/Versions/A/CloudDocs
0x7fff47f0d000 - 0x7fff47f16ff3 com.apple.CommonAuth (4.0 - 2.0) /System/Library/PrivateFrameworks/CommonAuth.framework/Versions/A/CommonAuth
0x7fff47f2b000 - 0x7fff47f40ff7 com.apple.commonutilities (8.0 - 900) /System/Library/PrivateFrameworks/CommonUtilities.framework/Versions/A/CommonUtilities
0x7fff4816f000 - 0x7fff481cffff com.apple.AddressBook.ContactsFoundation (8.0 - ???) /System/Library/PrivateFrameworks/ContactsFoundation.framework/Versions/A/ContactsFoundation
0x7fff481d0000 - 0x7fff481f2fff com.apple.contacts.ContactsPersistence (1.0 - 2330.3) /System/Library/PrivateFrameworks/ContactsPersistence.framework/Versions/A/ContactsPersistence
0x7fff48252000 - 0x7fff4865afff com.apple.CoreAUC (259.0.0 - 259.0.0) /System/Library/PrivateFrameworks/CoreAUC.framework/Versions/A/CoreAUC
0x7fff4865b000 - 0x7fff4868bff7 com.apple.CoreAVCHD (5.9.0 - 5900.4.1) /System/Library/PrivateFrameworks/CoreAVCHD.framework/Versions/A/CoreAVCHD
0x7fff48722000 - 0x7fff48774ff7 com.apple.corebrightness (1.0 - 1) /System/Library/PrivateFrameworks/CoreBrightness.framework/Versions/A/CoreBrightness
0x7fff488b3000 - 0x7fff488bcff7 com.apple.frameworks.CoreDaemon (1.3 - 1.3) /System/Library/PrivateFrameworks/CoreDaemon.framework/Versions/B/CoreDaemon
0x7fff48a2a000 - 0x7fff48a3aff7 com.apple.CoreEmoji (1.0 - 69.3) /System/Library/PrivateFrameworks/CoreEmoji.framework/Versions/A/CoreEmoji
0x7fff48d3e000 - 0x7fff48d54ff7 com.apple.CoreMediaAuthoring (2.2 - 956) /System/Library/PrivateFrameworks/CoreMediaAuthoring.framework/Versions/A/CoreMediaAuthoring
0x7fff48e9d000 - 0x7fff48efaff7 com.apple.CoreNLP (1.0 - 130.5.4) /System/Library/PrivateFrameworks/CoreNLP.framework/Versions/A/CoreNLP
0x7fff49083000 - 0x7fff49088ff7 com.apple.CoreOptimization (1.0 - 1) /System/Library/PrivateFrameworks/CoreOptimization.framework/Versions/A/CoreOptimization
0x7fff49089000 - 0x7fff4912efff com.apple.CorePDF (4.0 - 414) /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x7fff491ce000 - 0x7fff491d6ff3 com.apple.CorePhoneNumbers (1.0 - 1) /System/Library/PrivateFrameworks/CorePhoneNumbers.framework/Versions/A/CorePhoneNumbers
0x7fff491d7000 - 0x7fff49233fff com.apple.CorePrediction (1.0 - 1) /System/Library/PrivateFrameworks/CorePrediction.framework/Versions/A/CorePrediction
0x7fff49361000 - 0x7fff49392ff3 com.apple.CoreServicesInternal (309.1 - 309.1) /System/Library/PrivateFrameworks/CoreServicesInternal.framework/Versions/A/CoreServicesInternal
0x7fff4970c000 - 0x7fff4979dfff com.apple.CoreSymbolication (9.3 - 64026.2) /System/Library/PrivateFrameworks/CoreSymbolication.framework/Versions/A/CoreSymbolication
0x7fff49820000 - 0x7fff49955fff com.apple.coreui (2.1 - 494.1) /System/Library/PrivateFrameworks/CoreUI.framework/Versions/A/CoreUI
0x7fff49956000 - 0x7fff49a87fff com.apple.CoreUtils (5.6 - 560.11) /System/Library/PrivateFrameworks/CoreUtils.framework/Versions/A/CoreUtils
0x7fff49adc000 - 0x7fff49b40fff com.apple.framework.CoreWiFi (13.0 - 1350.2) /System/Library/PrivateFrameworks/CoreWiFi.framework/Versions/A/CoreWiFi
0x7fff49b41000 - 0x7fff49b51ff7 com.apple.CrashReporterSupport (10.13 - 1) /System/Library/PrivateFrameworks/CrashReporterSupport.framework/Versions/A/CrashReporterSupport
0x7fff49bd0000 - 0x7fff49bdfff7 com.apple.framework.DFRFoundation (1.0 - 191.7) /System/Library/PrivateFrameworks/DFRFoundation.framework/Versions/A/DFRFoundation
0x7fff49be2000 - 0x7fff49be6ffb com.apple.DSExternalDisplay (3.1 - 380) /System/Library/PrivateFrameworks/DSExternalDisplay.framework/Versions/A/DSExternalDisplay
0x7fff49c27000 - 0x7fff49c67ffb com.apple.datadetectors (5.0 - 376.1) /System/Library/PrivateFrameworks/DataDetectors.framework/Versions/A/DataDetectors
0x7fff49c68000 - 0x7fff49cdefff com.apple.datadetectorscore (7.0 - 590.3) /System/Library/PrivateFrameworks/DataDetectorsCore.framework/Versions/A/DataDetectorsCore
0x7fff49d2c000 - 0x7fff49d6cff7 com.apple.DebugSymbols (181.0 - 181.0) /System/Library/PrivateFrameworks/DebugSymbols.framework/Versions/A/DebugSymbols
0x7fff49d6d000 - 0x7fff49e9cfff com.apple.desktopservices (1.12.5 - 1.12.5) /System/Library/PrivateFrameworks/DesktopServicesPriv.framework/Versions/A/DesktopServicesPriv
0x7fff49f0f000 - 0x7fff49f10ff7 com.apple.diagnosticlogcollection (10.0 - 1000) /System/Library/PrivateFrameworks/DiagnosticLogCollection.framework/Versions/A/DiagnosticLogCollection
0x7fff49fa8000 - 0x7fff4a07aff7 com.apple.DiskImagesFramework (480.60.3 - 480.60.3) /System/Library/PrivateFrameworks/DiskImages.framework/Versions/A/DiskImages
0x7fff4a07b000 - 0x7fff4a169ff7 com.apple.DiskManagement (11.5 - 1429) /System/Library/PrivateFrameworks/DiskManagement.framework/Versions/A/DiskManagement
0x7fff4a16a000 - 0x7fff4a16eff7 com.apple.DisplayServicesFW (3.1 - 380) /System/Library/PrivateFrameworks/DisplayServices.framework/Versions/A/DisplayServices
0x7fff4a1f7000 - 0x7fff4a1fafff com.apple.EFILogin (2.0 - 2) /System/Library/PrivateFrameworks/EFILogin.framework/Versions/A/EFILogin
0x7fff4a957000 - 0x7fff4a96ffff com.apple.Engram (1.0 - 1) /System/Library/PrivateFrameworks/Engram.framework/Versions/A/Engram
0x7fff4acb1000 - 0x7fff4b0dffff com.apple.vision.FaceCore (3.3.2 - 3.3.2) /System/Library/PrivateFrameworks/FaceCore.framework/Versions/A/FaceCore
0x7fff4b112000 - 0x7fff4b19bff3 com.apple.FileProvider (125.15 - 125.15) /System/Library/PrivateFrameworks/FileProvider.framework/Versions/A/FileProvider
0x7fff4b1b2000 - 0x7fff4b5a1fff com.apple.FinderKit (1.6.6 - 1.6.6) /System/Library/PrivateFrameworks/FinderKit.framework/Versions/A/FinderKit
0x7fff4cd3b000 - 0x7fff4cd3bfff libmetal_timestamp.dylib (802.4.8) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/3802/Libraries/libmetal_timestamp.dylib
0x7fff4e39b000 - 0x7fff4e3a6ff7 libGPUSupportMercury.dylib (16.7.4) /System/Library/PrivateFrameworks/GPUSupport.framework/Versions/A/Libraries/libGPUSupportMercury.dylib
0x7fff4e3a7000 - 0x7fff4e3acfff com.apple.GPUWrangler (3.20.18 - 3.20.18) /System/Library/PrivateFrameworks/GPUWrangler.framework/Versions/A/GPUWrangler
0x7fff4e760000 - 0x7fff4e785ff3 com.apple.GenerationalStorage (2.0 - 285.3) /System/Library/PrivateFrameworks/GenerationalStorage.framework/Versions/A/GenerationalStorage
0x7fff4e79d000 - 0x7fff4f0dfff7 com.apple.GeoServices (1.0 - 1363.24.8.15.58) /System/Library/PrivateFrameworks/GeoServices.framework/Versions/A/GeoServices
0x7fff4f122000 - 0x7fff4f131fff com.apple.GraphVisualizer (1.0 - 5) /System/Library/PrivateFrameworks/GraphVisualizer.framework/Versions/A/GraphVisualizer
0x7fff4f1b4000 - 0x7fff4f228fff com.apple.Heimdal (4.0 - 2.0) /System/Library/PrivateFrameworks/Heimdal.framework/Versions/A/Heimdal
0x7fff4f229000 - 0x7fff4f257fff com.apple.HelpData (2.3 - 167.2) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff4f2c3000 - 0x7fff4f3d8ff3 com.apple.ids (10.0 - 1000) /System/Library/PrivateFrameworks/IDS.framework/Versions/A/IDS
0x7fff4f3d9000 - 0x7fff4f4b9ff7 com.apple.idsfoundation (10.0 - 1000) /System/Library/PrivateFrameworks/IDSFoundation.framework/Versions/A/IDSFoundation
0x7fff4fa0b000 - 0x7fff4fa71ff3 com.apple.imfoundation (10.0 - 1000) /System/Library/PrivateFrameworks/IMFoundation.framework/Versions/A/IMFoundation
0x7fff4fb31000 - 0x7fff4fb3afff com.apple.IOAccelMemoryInfo (1.0 - 1) /System/Library/PrivateFrameworks/IOAccelMemoryInfo.framework/Versions/A/IOAccelMemoryInfo
0x7fff4fb3b000 - 0x7fff4fb42ff7 com.apple.IOAccelerator (378.28 - 378.28) /System/Library/PrivateFrameworks/IOAccelerator.framework/Versions/A/IOAccelerator
0x7fff4fb46000 - 0x7fff4fb5dfff com.apple.IOPresentment (1.0 - 35.1) /System/Library/PrivateFrameworks/IOPresentment.framework/Versions/A/IOPresentment
0x7fff4ff28000 - 0x7fff4ff4effb com.apple.IconServices (97.6 - 97.6) /System/Library/PrivateFrameworks/IconServices.framework/Versions/A/IconServices
0x7fff5005b000 - 0x7fff5005eff3 com.apple.InternationalSupport (1.0 - 1) /System/Library/PrivateFrameworks/InternationalSupport.framework/Versions/A/InternationalSupport
0x7fff500cc000 - 0x7fff500dcffb com.apple.IntlPreferences (2.0 - 227.5.2) /System/Library/PrivateFrameworks/IntlPreferences.framework/Versions/A/IntlPreferences
0x7fff501d3000 - 0x7fff501e6ff3 com.apple.security.KeychainCircle.KeychainCircle (1.0 - 1) /System/Library/PrivateFrameworks/KeychainCircle.framework/Versions/A/KeychainCircle
0x7fff501e7000 - 0x7fff502dcff7 com.apple.LanguageModeling (1.0 - 159.5.3) /System/Library/PrivateFrameworks/LanguageModeling.framework/Versions/A/LanguageModeling
0x7fff502dd000 - 0x7fff5031ffff com.apple.Lexicon-framework (1.0 - 33.5) /System/Library/PrivateFrameworks/Lexicon.framework/Versions/A/Lexicon
0x7fff50323000 - 0x7fff5032aff7 com.apple.LinguisticData (1.0 - 238.3) /System/Library/PrivateFrameworks/LinguisticData.framework/Versions/A/LinguisticData
0x7fff5041b000 - 0x7fff50420fff com.apple.LoginUICore (4.0 - 4.0) /System/Library/PrivateFrameworks/LoginUIKit.framework/Versions/A/Frameworks/LoginUICore.framework/Versions/A/LoginUICore
0x7fff5046c000 - 0x7fff50489ff7 com.apple.LookupFramework (1.2 - 239.1) /System/Library/PrivateFrameworks/Lookup.framework/Versions/A/Lookup
0x7fff50b2b000 - 0x7fff50b2efff com.apple.Mangrove (1.0 - 1) /System/Library/PrivateFrameworks/Mangrove.framework/Versions/A/Mangrove
0x7fff50bba000 - 0x7fff50bbcff7 com.apple.marco (10.0 - 1000) /System/Library/PrivateFrameworks/Marco.framework/Versions/A/Marco
0x7fff50c4a000 - 0x7fff50c7dff7 com.apple.MediaKit (16 - 873) /System/Library/PrivateFrameworks/MediaKit.framework/Versions/A/MediaKit
0x7fff50c7e000 - 0x7fff50fa7ff7 com.apple.MediaRemote (1.0 - 1) /System/Library/PrivateFrameworks/MediaRemote.framework/Versions/A/MediaRemote
0x7fff50fa8000 - 0x7fff50fc9fff com.apple.MediaServices (1.0 - 1) /System/Library/PrivateFrameworks/MediaServices.framework/Versions/A/MediaServices
0x7fff5103e000 - 0x7fff510a7ff7 com.apple.gpusw.MetalTools (1.0 - 1) /System/Library/PrivateFrameworks/MetalTools.framework/Versions/A/MetalTools
0x7fff510b0000 - 0x7fff510c7ff7 com.apple.MobileAssets (1.0 - 437.60.1) /System/Library/PrivateFrameworks/MobileAsset.framework/Versions/A/MobileAsset
0x7fff51237000 - 0x7fff51250fff com.apple.MobileKeyBag (2.0 - 1.0) /System/Library/PrivateFrameworks/MobileKeyBag.framework/Versions/A/MobileKeyBag
0x7fff512dc000 - 0x7fff51306ffb com.apple.MultitouchSupport.framework (1614.1 - 1614.1) /System/Library/PrivateFrameworks/MultitouchSupport.framework/Versions/A/MultitouchSupport
0x7fff5156d000 - 0x7fff51578fff com.apple.NetAuth (6.2 - 6.2) /System/Library/PrivateFrameworks/NetAuth.framework/Versions/A/NetAuth
0x7fff51585000 - 0x7fff51671ff3 com.apple.Network (1.0 - 1) /System/Library/PrivateFrameworks/Network.framework/Versions/A/Network
0x7fff51746000 - 0x7fff51762ff3 com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff52e14000 - 0x7fff52e24ffb com.apple.PerformanceAnalysis (1.194 - 194) /System/Library/PrivateFrameworks/PerformanceAnalysis.framework/Versions/A/PerformanceAnalysis
0x7fff52e9c000 - 0x7fff52e9cff7 com.apple.PhoneNumbers (1.0 - 1) /System/Library/PrivateFrameworks/PhoneNumbers.framework/Versions/A/PhoneNumbers
0x7fff5486f000 - 0x7fff54894fff com.apple.pluginkit.framework (1.0 - 1) /System/Library/PrivateFrameworks/PlugInKit.framework/Versions/A/PlugInKit
0x7fff54b8b000 - 0x7fff54be2fff com.apple.ProtectedCloudStorage (1.0 - 1) /System/Library/PrivateFrameworks/ProtectedCloudStorage.framework/Versions/A/ProtectedCloudStorage
0x7fff54be3000 - 0x7fff54c01fff com.apple.ProtocolBuffer (1 - 260) /System/Library/PrivateFrameworks/ProtocolBuffer.framework/Versions/A/ProtocolBuffer
0x7fff54d6e000 - 0x7fff54d84ff7 com.apple.QuickLookThumbnailing (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookThumbnailing.framework/Versions/A/QuickLookThumbnailing
0x7fff54dcb000 - 0x7fff54dd7fff com.apple.xpc.RemoteServiceDiscovery (1.0 - 1205.70.16) /System/Library/PrivateFrameworks/RemoteServiceDiscovery.framework/Versions/A/RemoteServiceDiscovery
0x7fff54dd8000 - 0x7fff54dfbffb com.apple.RemoteViewServices (2.0 - 125) /System/Library/PrivateFrameworks/RemoteViewServices.framework/Versions/A/RemoteViewServices
0x7fff54dfc000 - 0x7fff54e11ff3 com.apple.xpc.RemoteXPC (1.0 - 1205.70.16) /System/Library/PrivateFrameworks/RemoteXPC.framework/Versions/A/RemoteXPC
0x7fff56714000 - 0x7fff5671cff7 com.apple.coreservices.SharePointManager (1.0 - 57.1) /System/Library/PrivateFrameworks/SharePointManagement.framework/Versions/A/SharePointManagement
0x7fff56721000 - 0x7fff56836ff7 com.apple.Sharing (1050.22.9 - 1050.22.9) /System/Library/PrivateFrameworks/Sharing.framework/Versions/A/Sharing
0x7fff56837000 - 0x7fff56856ff7 com.apple.shortcut (2.16 - 99) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff56861000 - 0x7fff56862ff7 com.apple.performance.SignpostNotification (1.2.6 - 2.6) /System/Library/PrivateFrameworks/SignpostNotification.framework/Versions/A/SignpostNotification
0x7fff575c0000 - 0x7fff5785dfff com.apple.SkyLight (1.600.0 - 312.103.12) /System/Library/PrivateFrameworks/SkyLight.framework/Versions/A/SkyLight
0x7fff58026000 - 0x7fff58033fff com.apple.SpeechRecognitionCore (4.6.1 - 4.6.1) /System/Library/PrivateFrameworks/SpeechRecognitionCore.framework/Versions/A/SpeechRecognitionCore
0x7fff580e5000 - 0x7fff58323ff3 com.apple.spotlight.index (10.7.0 - 1191.8) /System/Library/PrivateFrameworks/SpotlightIndex.framework/Versions/A/SpotlightIndex
0x7fff584e0000 - 0x7fff58507fff com.apple.StreamingZip (1.0 - 1) /System/Library/PrivateFrameworks/StreamingZip.framework/Versions/A/StreamingZip
0x7fff58508000 - 0x7fff58579ffb com.apple.Suggestions (6.0 - 213) /System/Library/PrivateFrameworks/Suggestions.framework/Versions/A/Suggestions
0x7fff58bd9000 - 0x7fff58c62fc7 com.apple.Symbolication (9.3 - 64033) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff58c73000 - 0x7fff58c7bffb com.apple.SymptomDiagnosticReporter (1.0 - 820.60.3) /System/Library/PrivateFrameworks/SymptomDiagnosticReporter.framework/Versions/A/SymptomDiagnosticReporter
0x7fff58f28000 - 0x7fff58f54fff com.apple.framework.SystemAdministration (1.0 - 1.0) /System/Library/PrivateFrameworks/SystemAdministration.framework/Versions/A/SystemAdministration
0x7fff591d3000 - 0x7fff591dbff7 com.apple.TCC (1.0 - 1) /System/Library/PrivateFrameworks/TCC.framework/Versions/A/TCC
0x7fff593e8000 - 0x7fff594a5ff7 com.apple.TextureIO (3.7 - 3.7) /System/Library/PrivateFrameworks/TextureIO.framework/Versions/A/TextureIO
0x7fff594fc000 - 0x7fff59517ffb com.apple.ToneKit (1.0 - 1) /System/Library/PrivateFrameworks/ToneKit.framework/Versions/A/ToneKit
0x7fff59518000 - 0x7fff5953ffff com.apple.ToneLibrary (1.0 - 1) /System/Library/PrivateFrameworks/ToneLibrary.framework/Versions/A/ToneLibrary
0x7fff5954f000 - 0x7fff59550fff com.apple.TrustEvaluationAgent (2.0 - 31) /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent
0x7fff59556000 - 0x7fff59706fff com.apple.UIFoundation (1.0 - 547.9) /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
0x7fff5a3db000 - 0x7fff5a4aaff7 com.apple.ViewBridge (343.2 - 343.2) /System/Library/PrivateFrameworks/ViewBridge.framework/Versions/A/ViewBridge
0x7fff5ae82000 - 0x7fff5ae84ffb com.apple.loginsupport (1.0 - 1) /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport
0x7fff5ae85000 - 0x7fff5ae9afff com.apple.login (3.0 - 3.0) /System/Library/PrivateFrameworks/login.framework/Versions/A/login
0x7fff5aec5000 - 0x7fff5aef2fff com.apple.contacts.vCard (1.0 - 2330.3) /System/Library/PrivateFrameworks/vCard.framework/Versions/A/vCard
0x7fff5afeb000 - 0x7fff5b01eff7 libclosured.dylib (551.5) /usr/lib/closure/libclosured.dylib
0x7fff5b0d8000 - 0x7fff5b111ff7 libCRFSuite.dylib (41) /usr/lib/libCRFSuite.dylib
0x7fff5b112000 - 0x7fff5b11dfff libChineseTokenizer.dylib (28) /usr/lib/libChineseTokenizer.dylib
0x7fff5b11e000 - 0x7fff5b1abff7 libCoreStorage.dylib (546.50.1) /usr/lib/libCoreStorage.dylib
0x7fff5b1af000 - 0x7fff5b1b0ff3 libDiagnosticMessagesClient.dylib (104) /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff5b1e7000 - 0x7fff5b3b1ff3 libFosl_dynamic.dylib (17.8) /usr/lib/libFosl_dynamic.dylib
0x7fff5b3d1000 - 0x7fff5b3d8fff libMatch.1.dylib (31) /usr/lib/libMatch.1.dylib
0x7fff5b3e9000 - 0x7fff5b3e9fff libOpenScriptingUtil.dylib (174) /usr/lib/libOpenScriptingUtil.dylib
0x7fff5b520000 - 0x7fff5b524ffb libScreenReader.dylib (562.18.5) /usr/lib/libScreenReader.dylib
0x7fff5b525000 - 0x7fff5b526ffb libSystem.B.dylib (1252.50.4) /usr/lib/libSystem.B.dylib
0x7fff5b5a5000 - 0x7fff5b5a6fff libThaiTokenizer.dylib (2.2) /usr/lib/libThaiTokenizer.dylib
0x7fff5b5b9000 - 0x7fff5b5b9fff libapple_crypto.dylib (109.50.15) /usr/lib/libapple_crypto.dylib
0x7fff5b5ba000 - 0x7fff5b5d0ff7 libapple_nghttp2.dylib (1.24) /usr/lib/libapple_nghttp2.dylib
0x7fff5b5d1000 - 0x7fff5b5fbff3 libarchive.2.dylib (54) /usr/lib/libarchive.2.dylib
0x7fff5b5fc000 - 0x7fff5b67dfdf libate.dylib (1.13.1) /usr/lib/libate.dylib
0x7fff5b681000 - 0x7fff5b681ff3 libauto.dylib (187) /usr/lib/libauto.dylib
0x7fff5b682000 - 0x7fff5b73bffb libboringssl.dylib (109.50.15) /usr/lib/libboringssl.dylib
0x7fff5b73c000 - 0x7fff5b74cff3 libbsm.0.dylib (39) /usr/lib/libbsm.0.dylib
0x7fff5b74d000 - 0x7fff5b75affb libbz2.1.0.dylib (38) /usr/lib/libbz2.1.0.dylib
0x7fff5b75b000 - 0x7fff5b7b1fff libc++.1.dylib (400.9) /usr/lib/libc++.1.dylib
0x7fff5b7b2000 - 0x7fff5b7d6ff7 libc++abi.dylib (400.8.2) /usr/lib/libc++abi.dylib
0x7fff5b7d8000 - 0x7fff5b7e8fff libcmph.dylib (6) /usr/lib/libcmph.dylib
0x7fff5b7e9000 - 0x7fff5b800fcf libcompression.dylib (47.60.2) /usr/lib/libcompression.dylib
0x7fff5baab000 - 0x7fff5bac3ff7 libcoretls.dylib (155.50.1) /usr/lib/libcoretls.dylib
0x7fff5bac4000 - 0x7fff5bac5ff3 libcoretls_cfhelpers.dylib (155.50.1) /usr/lib/libcoretls_cfhelpers.dylib
0x7fff5bc5e000 - 0x7fff5bdeffff libcrypto.35.dylib (22.50.3) /usr/lib/libcrypto.35.dylib
0x7fff5bf8a000 - 0x7fff5bf95ff7 libcsfde.dylib (546.50.1) /usr/lib/libcsfde.dylib
0x7fff5bf96000 - 0x7fff5bfebff3 libcups.2.dylib (462.2.10) /usr/lib/libcups.2.dylib
0x7fff5c016000 - 0x7fff5c06afff libcurl.4.dylib (105.40.2) /usr/lib/libcurl.4.dylib
0x7fff5c12b000 - 0x7fff5c12bfff libenergytrace.dylib (16) /usr/lib/libenergytrace.dylib
0x7fff5c12c000 - 0x7fff5c145ff3 libexpat.1.dylib (16.1.1.1) /usr/lib/libexpat.1.dylib
0x7fff5c146000 - 0x7fff5c152ffb libexslt.0.dylib (15.16) /usr/lib/libexslt.0.dylib
0x7fff5c153000 - 0x7fff5c154fff libffi.dylib (18.1) /usr/lib/libffi.dylib
0x7fff5c15d000 - 0x7fff5c161ff7 libgermantok.dylib (17) /usr/lib/libgermantok.dylib
0x7fff5c162000 - 0x7fff5c167ff3 libheimdal-asn1.dylib (520.50.9) /usr/lib/libheimdal-asn1.dylib
0x7fff5c193000 - 0x7fff5c284ff7 libiconv.2.dylib (51.50.1) /usr/lib/libiconv.2.dylib
0x7fff5c285000 - 0x7fff5c4acffb libicucore.A.dylib (59181.0.1) /usr/lib/libicucore.A.dylib
0x7fff5c4f9000 - 0x7fff5c4fafff liblangid.dylib (128) /usr/lib/liblangid.dylib
0x7fff5c4fb000 - 0x7fff5c514ffb liblzma.5.dylib (10) /usr/lib/liblzma.5.dylib
0x7fff5c515000 - 0x7fff5c52bff7 libmarisa.dylib (9) /usr/lib/libmarisa.dylib
0x7fff5c52c000 - 0x7fff5c5dbfff libmecab.1.0.0.dylib (779.7.6) /usr/lib/libmecab.1.0.0.dylib
0x7fff5c5dc000 - 0x7fff5c804ff7 libmecabra.dylib (779.7.6) /usr/lib/libmecabra.dylib
0x7fff5c9dc000 - 0x7fff5cb57fff libnetwork.dylib (1229.70.2) /usr/lib/libnetwork.dylib
0x7fff5cbde000 - 0x7fff5cfcc7e7 libobjc.A.dylib (723) /usr/lib/libobjc.A.dylib
0x7fff5cfcd000 - 0x7fff5cfcefff libodfde.dylib (24.50.1) /usr/lib/libodfde.dylib
0x7fff5cfdf000 - 0x7fff5cfe3fff libpam.2.dylib (22) /usr/lib/libpam.2.dylib
0x7fff5cfe6000 - 0x7fff5d01eff7 libpcap.A.dylib (79.20.3) /usr/lib/libpcap.A.dylib
0x7fff5d069000 - 0x7fff5d06cff7 libpmenergy.dylib (187.70.3) /usr/lib/libpmenergy.dylib
0x7fff5d06d000 - 0x7fff5d06ffff libpmsample.dylib (187.70.3) /usr/lib/libpmsample.dylib
0x7fff5d09d000 - 0x7fff5d0b9ffb libresolv.9.dylib (65.1) /usr/lib/libresolv.9.dylib
0x7fff5d0bb000 - 0x7fff5d0f4ff3 libsandbox.1.dylib (765.70.2) /usr/lib/libsandbox.1.dylib
0x7fff5d0f5000 - 0x7fff5d107fff libsasl2.2.dylib (211.0.2) /usr/lib/libsasl2.2.dylib
0x7fff5d108000 - 0x7fff5d109ff3 libspindump.dylib (252) /usr/lib/libspindump.dylib
0x7fff5d10a000 - 0x7fff5d29dff7 libsqlite3.dylib (274.8.1) /usr/lib/libsqlite3.dylib
0x7fff5d2f9000 - 0x7fff5d34cffb libssl.35.dylib (22.50.3) /usr/lib/libssl.35.dylib
0x7fff5d3f5000 - 0x7fff5d406fff libsystemstats.dylib (403.50.9) /usr/lib/libsystemstats.dylib
0x7fff5d424000 - 0x7fff5d459fff libtidy.A.dylib (15.18.4) /usr/lib/libtidy.A.dylib
0x7fff5d471000 - 0x7fff5d4d1ff3 libusrtcp.dylib (1229.70.2) /usr/lib/libusrtcp.dylib
0x7fff5d4d2000 - 0x7fff5d4d5ffb libutil.dylib (51.20.1) /usr/lib/libutil.dylib
0x7fff5d4d6000 - 0x7fff5d4e3ff3 libxar.1.dylib (417.1) /usr/lib/libxar.1.dylib
0x7fff5d4e7000 - 0x7fff5d5ceffb libxml2.2.dylib (31.20) /usr/lib/libxml2.2.dylib
0x7fff5d5cf000 - 0x7fff5d5f7fff libxslt.1.dylib (15.16) /usr/lib/libxslt.1.dylib
0x7fff5d5f8000 - 0x7fff5d60affb libz.1.dylib (70) /usr/lib/libz.1.dylib
0x7fff5d6a6000 - 0x7fff5d6aaff7 libcache.dylib (80) /usr/lib/system/libcache.dylib
0x7fff5d6ab000 - 0x7fff5d6b5ff3 libcommonCrypto.dylib (60118.50.1) /usr/lib/system/libcommonCrypto.dylib
0x7fff5d6b6000 - 0x7fff5d6bdfff libcompiler_rt.dylib (62) /usr/lib/system/libcompiler_rt.dylib
0x7fff5d6be000 - 0x7fff5d6c7ffb libcopyfile.dylib (146.50.5) /usr/lib/system/libcopyfile.dylib
0x7fff5d6c8000 - 0x7fff5d74dffb libcorecrypto.dylib (562.70.3) /usr/lib/system/libcorecrypto.dylib
0x7fff5d7d5000 - 0x7fff5d80eff7 libdispatch.dylib (913.60.3) /usr/lib/system/libdispatch.dylib
0x7fff5d80f000 - 0x7fff5d82cff7 libdyld.dylib (551.5) /usr/lib/system/libdyld.dylib
0x7fff5d82d000 - 0x7fff5d82dffb libkeymgr.dylib (28) /usr/lib/system/libkeymgr.dylib
0x7fff5d82e000 - 0x7fff5d83aff3 libkxld.dylib (4570.71.82.8) /usr/lib/system/libkxld.dylib
0x7fff5d83b000 - 0x7fff5d83bff7 liblaunch.dylib (1205.70.16) /usr/lib/system/liblaunch.dylib
0x7fff5d83c000 - 0x7fff5d840ffb libmacho.dylib (906) /usr/lib/system/libmacho.dylib
0x7fff5d841000 - 0x7fff5d843fff libquarantine.dylib (86.70.1) /usr/lib/system/libquarantine.dylib
0x7fff5d844000 - 0x7fff5d845ff3 libremovefile.dylib (45) /usr/lib/system/libremovefile.dylib
0x7fff5d846000 - 0x7fff5d85dfff libsystem_asl.dylib (356.70.1) /usr/lib/system/libsystem_asl.dylib
0x7fff5d85e000 - 0x7fff5d85efff libsystem_blocks.dylib (67) /usr/lib/system/libsystem_blocks.dylib
0x7fff5d85f000 - 0x7fff5d8e8ff7 libsystem_c.dylib (1244.50.9) /usr/lib/system/libsystem_c.dylib
0x7fff5d8e9000 - 0x7fff5d8ecffb libsystem_configuration.dylib (963.50.9) /usr/lib/system/libsystem_configuration.dylib
0x7fff5d8ed000 - 0x7fff5d8f0ffb libsystem_coreservices.dylib (51) /usr/lib/system/libsystem_coreservices.dylib
0x7fff5d8f1000 - 0x7fff5d8f2fff libsystem_darwin.dylib (1244.50.9) /usr/lib/system/libsystem_darwin.dylib
0x7fff5d8f3000 - 0x7fff5d8f9ffb libsystem_dnssd.dylib (878.70.4) /usr/lib/system/libsystem_dnssd.dylib
0x7fff5d8fa000 - 0x7fff5d943ff7 libsystem_info.dylib (517.30.1) /usr/lib/system/libsystem_info.dylib
0x7fff5d944000 - 0x7fff5d96aff7 libsystem_kernel.dylib (4570.71.82.8) /usr/lib/system/libsystem_kernel.dylib
0x7fff5d96b000 - 0x7fff5d9b6fcb libsystem_m.dylib (3147.50.1) /usr/lib/system/libsystem_m.dylib
0x7fff5d9b7000 - 0x7fff5d9d6ff7 libsystem_malloc.dylib (140.50.7) /usr/lib/system/libsystem_malloc.dylib
0x7fff5d9d7000 - 0x7fff5db07ff7 libsystem_network.dylib (1229.70.2) /usr/lib/system/libsystem_network.dylib
0x7fff5db08000 - 0x7fff5db12ffb libsystem_networkextension.dylib (767.70.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff5db13000 - 0x7fff5db1cff3 libsystem_notify.dylib (172) /usr/lib/system/libsystem_notify.dylib
0x7fff5db1d000 - 0x7fff5db24ff7 libsystem_platform.dylib (161.50.1) /usr/lib/system/libsystem_platform.dylib
0x7fff5db25000 - 0x7fff5db30fff libsystem_pthread.dylib (301.50.1) /usr/lib/system/libsystem_pthread.dylib
0x7fff5db31000 - 0x7fff5db34fff libsystem_sandbox.dylib (765.70.2) /usr/lib/system/libsystem_sandbox.dylib
0x7fff5db35000 - 0x7fff5db36ff3 libsystem_secinit.dylib (30) /usr/lib/system/libsystem_secinit.dylib
0x7fff5db37000 - 0x7fff5db3eff7 libsystem_symptoms.dylib (820.60.3) /usr/lib/system/libsystem_symptoms.dylib
0x7fff5db3f000 - 0x7fff5db53ff7 libsystem_trace.dylib (829.70.2) /usr/lib/system/libsystem_trace.dylib
0x7fff5db55000 - 0x7fff5db5aff7 libunwind.dylib (35.3) /usr/lib/system/libunwind.dylib
0x7fff5db5b000 - 0x7fff5db88fff libxpc.dylib (1205.70.16) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 83
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 3629511
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=917.4M resident=0K(0%) swapped_out_or_unallocated=917.4M(100%)
Writable regions: Total=4.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=4.3G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 256K 3
Activity Tracing 256K 2
CG backing stores 2668K 7
CG image 2148K 48
CoreAnimation 41.4M 103
CoreGraphics 8K 2
CoreImage 264K 34
CoreUI image data 5688K 35
CoreUI image file 216K 6
Foundation 24K 3
Image IO 64K 2
Kernel Alloc Once 8K 2
MALLOC 3.8G 768
MALLOC guard page 48K 13
MALLOC_LARGE (reserved) 384K 2 reserved VM address space (unallocated)
Mach message 24K 5
Memory Tag 242 12K 2
Memory Tag 251 48K 4
OpenGL GLSL 384K 6
STACK GUARD 112K 29
Stack 157.7M 30
Stack Guard 56.0M 2
VM_ALLOCATE 165.8M 168
VM_ALLOCATE (reserved) 128.0M 3 reserved VM address space (unallocated)
__DATA 56.8M 601
__FONT_DATA 4K 2
__GLSLBUILTINS 2588K 2
__LINKEDIT 297.0M 207
__TEXT 620.4M 557
__UNICODE 560K 2
mapped file 128.6M 257
shared memory 6004K 22
=========== ======= =======
TOTAL 5.4G 2897
TOTAL, minus reserved VM space 5.3G 2897
System Profile:
Network Service: Ethernet, Ethernet, en0
Boot Volume File System Type: apfs
Memory Module: BANK 0/DIMM0, 8 GB, DDR4, 2400 MHz, 0x802C, 0x3841544631473634485A2D324733423220202020
Memory Module: BANK 1/DIMM0, 8 GB, DDR4, 2400 MHz, 0x802C, 0x3841544631473634485A2D324733423220202020
USB Device: USB 3.0 Bus
USB Device: Bluetooth USB Host Controller
USB Device: FaceTime HD Camera (Built-in)
Thunderbolt Bus: iMac, Apple Inc., 33.1
Model: iMac18,3, BootROM 428.0.0.0.0, 4 processors, Intel Core i5, 3,5 GHz, 16 GB, SMC 2.41f1
Graphics: Radeon Pro 575, Radeon Pro 575, PCIe
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x16F), Broadcom BCM43xx 1.0 (7.77.37.33.1a1)
Bluetooth: Version 6.0.7f22, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open
> /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/RNAalone_Sen1-movement.cxs
Log from Wed Jul 5 18:20:04 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open
> /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/RNAalone_Sen1-movement.cxs
Log from Tue Jul 4 15:54:35 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open
> /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/Sen1-movement.cxs
> format session
Log from Tue Jun 27 18:31:53 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open
> /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/Sen1-movement.cxs
Log from Tue Jun 27 18:29:08 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open
> /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/Sen1-movement.cxs
Log from Tue Jun 27 14:31:08 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/test-
> movement.cxs format session
Opened qlgzuizmyn.pqr.dx as #6, grid size 161,225,225, pixel 0.543,0.495,0.48,
shown at level 39.1,45.3, step 1, values float32
Opened 1qll0kpcmk.pqr.dx as #8, grid size 193,193,193, pixel
0.505,0.479,0.488, shown at level -47.6,47.6, step 1, values float32
Map values for surface "Sen1-alone_noATP-
RSR59-coot-0.updated_real_space_refined.pdb_O SES surface": minimum -399.8,
mean -0.4522, maximum 434.8
Map values for surface "2xzo-edit.pdb_A SES surface": minimum -371.2, mean
2.415, maximum 249
Log from Tue May 2 15:00:54 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/test-
> movement.cxs
Opened qlgzuizmyn.pqr.dx as #6, grid size 161,225,225, pixel 0.543,0.495,0.48,
shown at level 39.1,45.3, step 1, values float32
Opened 1qll0kpcmk.pqr.dx as #8, grid size 193,193,193, pixel
0.505,0.479,0.488, shown at level -47.6,47.6, step 1, values float32
Map values for surface "Sen1-alone_noATP-
RSR59-coot-0.updated_real_space_refined.pdb_O SES surface": minimum -399.8,
mean -0.4522, maximum 434.8
Map values for surface "2xzo-edit.pdb_A SES surface": minimum -371.2, mean
2.415, maximum 249
Log from Sun Apr 30 14:20:24 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
> open /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/overall-
> figure.cxs
Log from Thu Apr 20 13:54:59 2023UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/srengac/Documents/Phenix/Sen1/RealSpaceRefine_43/Pol2-EC_Sen1_noATP-
> RSR43-noH.pdb
Chain information for Pol2-EC_Sen1_noATP-RSR43-noH.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
Q | No description available
T | No description available
Y | No description available
Z | No description available
> show cartoons
> style sphere
Changed 40290 atom styles
> hide target a
> lighting soft
> lighting flat
> color dark gray
> select /O:1102
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
123 atoms, 123 bonds, 14 residues, 1 model selected
> select up
5523 atoms, 5625 bonds, 690 residues, 1 model selected
> color sel yellow
> select clear
> select /Q:12
22 atoms, 24 bonds, 1 residue, 1 model selected
> select up
278 atoms, 310 bonds, 13 residues, 1 model selected
> select up
40290 atoms, 41221 bonds, 4918 residues, 1 model selected
> select clear
> select /Q:5
23 atoms, 25 bonds, 1 residue, 1 model selected
> select up
278 atoms, 310 bonds, 13 residues, 1 model selected
> color sel red
> select clear
> select /P:21
23 atoms, 25 bonds, 1 residue, 1 model selected
> select up
348 atoms, 390 bonds, 16 residues, 1 model selected
> close #1
> open
> /Users/srengac/Documents/Phenix/Sen1/RealSpaceRefine_43/Pol2-EC_Sen1_noATP-
> RSR43-noH.pdb format pdb
Chain information for Pol2-EC_Sen1_noATP-RSR43-noH.pdb #1
---
Chain | Description
A | No description available
B | No description available
C | No description available
D | No description available
E | No description available
F | No description available
G | No description available
H | No description available
I | No description available
J | No description available
K | No description available
L | No description available
M | No description available
N | No description available
O | No description available
P | No description available
T | No description available
Y | No description available
Z | No description available
> show cartoons
> hide target a
> lighting flat
> color dark gray
> select /O:1421
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
98 atoms, 97 bonds, 13 residues, 1 model selected
> select up
5523 atoms, 5625 bonds, 690 residues, 1 model selected
> color sel yellow
> select clear
> select /P:11
20 atoms, 21 bonds, 1 residue, 1 model selected
> select up
626 atoms, 700 bonds, 29 residues, 1 model selected
> color sel red
> select clear
> select /N:15
19 atoms, 20 bonds, 1 residue, 1 model selected
> select up
629 atoms, 703 bonds, 31 residues, 1 model selected
> ui tool show "Color Actions"
> color sel #9fffffff
[Repeated 2 time(s)]
> color sel #88ffffff
> color sel #88ceffff
[Repeated 3 time(s)]
> select clear
> select /T:45
22 atoms, 24 bonds, 1 residue, 1 model selected
> select up
849 atoms, 952 bonds, 41 residues, 1 model selected
> color sel #30ceffff
> color sel #3030ffff
> color sel #3030c6ff
> select clear
[Repeated 1 time(s)]
> select /Y:38
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
30 atoms, 29 bonds, 4 residues, 1 model selected
> select up
739 atoms, 755 bonds, 98 residues, 1 model selected
> select up
40290 atoms, 41221 bonds, 4918 residues, 1 model selected
> select clear
[Repeated 1 time(s)]
> select /M:74
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
98 atoms, 101 bonds, 12 residues, 1 model selected
> select up
508 atoms, 515 bonds, 65 residues, 1 model selected
> select up
40290 atoms, 41221 bonds, 4918 residues, 1 model selected
> select clear
> select /Y:39
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
30 atoms, 29 bonds, 4 residues, 1 model selected
> select up
739 atoms, 755 bonds, 98 residues, 1 model selected
> color sel cyan
> color sel forest green
> select clear
[Repeated 1 time(s)]
> select /M:18
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
42 atoms, 41 bonds, 5 residues, 1 model selected
> select up
508 atoms, 515 bonds, 65 residues, 1 model selected
> color sel magenta
> select clear
> select /Z:858
12 atoms, 12 bonds, 1 residue, 1 model selected
> select up
193 atoms, 195 bonds, 24 residues, 1 model selected
> select up
593 atoms, 600 bonds, 75 residues, 1 model selected
> color sel forest green
> select clear
> lighting soft
[Repeated 1 time(s)]
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> select clear
> cartoon style xsection oval modeHelix default
> cartoon style modeHelix tube sides 20
> select clear
> set silhouetteDepthJump 0.19
> set silhouetteDepthJump 0.5
> set silhouetteDepthJump 2
> set silhouetteDepthJump 0.05
> set silhouetteDepthJump 0.01
> lighting shadows true intensity 0.5
> lighting full
> lighting soft
[Repeated 1 time(s)]
> lighting simple
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> lighting flat
[Repeated 2 time(s)]
> lighting shadows true intensity 0.5
> lighting shadows false
> graphics silhouettes false
> graphics silhouettes true
> lighting flat
> lighting soft
> lighting shadows true intensity 0.5
> lighting shadows false
> turn z 90
> turn x, -90
Expected an axis vector or a keyword
> turn x -90
> ui tool show "Side View"
> turn x 90
> turn Z -90
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/overall-
> topview.png width 3000 height 2001 supersample 3 transparentBackground true
> turn Z 90
> turn x -90
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/overall-
> Sen1_sideview.png width 3000 height 2001 supersample 3
> lighting flat
[Repeated 1 time(s)]
> lighting full
> lighting flat
> graphics silhouettes false
> graphics silhouettes true
> lighting soft
> lighting simple
> lighting full
> graphics silhouettes false
> graphics silhouettes true
> lighting shadows false
> lighting simple
> lighting full
> lighting simple
> lighting soft
> lighting flat
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> lighting shadows true intensity 0.5
> lighting soft
> lighting shadows true intensity 0.5
> lighting soft
[Repeated 5 time(s)]
> lighting shadows true intensity 0.5
> lighting shadows false
> turn x 90
> turn z -90
> view orient
[Repeated 3 time(s)]
> view
> ui tool show "Side View"
[Repeated 1 time(s)]
> view
[Repeated 2 time(s)]
> view orient
> undo
[Repeated 8 time(s)]
> view matrix
camera position:
-0.5363,0.14021,-0.8323,-333.85,0.021991,0.98809,0.15228,266.48,0.84374,0.063364,-0.533,-132.16
model positions: #1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1,1,0,0,0,0,1,0,0,0,0,1,0
> view orient
> undo
> view orient
> select ions
10 atoms, 10 residues, 1 model selected
> show sel target ab
> color sel byelement
> select clear
> select /A:1803@MG
1 atom, 1 residue, 1 model selected
> color sel magenta
> select clear
> select /M:71
6 atoms, 5 bonds, 1 residue, 1 model selected
> select up
98 atoms, 101 bonds, 12 residues, 1 model selected
> select up
508 atoms, 515 bonds, 65 residues, 1 model selected
> color sel #d783ffff
> color sel #ff2f92ff
> color sel #942193ff
> select clear
> select /M:201@ZN
1 atom, 1 residue, 1 model selected
> color sel byelement
> select clear
> select /T:44
20 atoms, 21 bonds, 1 residue, 1 model selected
> select up
849 atoms, 952 bonds, 41 residues, 1 model selected
> select add /N:16
870 atoms, 975 bonds, 42 residues, 1 model selected
> select up
1478 atoms, 1655 bonds, 72 residues, 1 model selected
> select add /P:22
1500 atoms, 1679 bonds, 73 residues, 1 model selected
> select up
2104 atoms, 2355 bonds, 101 residues, 1 model selected
> nucleotides sel fill
> show (sel-residues & sidechain) target ab
> style sel stick
Changed 2104 atom styles
> select clear
[Repeated 2 time(s)]
> select ::name="DA"
399 atoms, 442 bonds, 19 residues, 1 model selected
> style sel ringFill thin
Changed 19 residue ring styles
> select clear
> select nucleic-acid
2104 atoms, 2355 bonds, 1 pseudobond, 101 residues, 2 models selected
> style (#!1 & sel) sphere
Changed 2104 atom styles
> style (#!1 & sel) ringFill off
Changed 101 residue ring styles
> style (#!1 & sel) ball
Changed 2104 atom styles
> style (#!1 & sel) stick
Changed 2104 atom styles
> style (#!1 & sel) ringFill thick
Changed 101 residue ring styles
> select clear
> nucleotides atoms
> select nucleic-acid
2104 atoms, 2355 bonds, 1 pseudobond, 101 residues, 2 models selected
> hide (#!1 & sel) target a
> select clear
> select ions
10 atoms, 10 residues, 1 model selected
> style sel sphere
Changed 10 atom styles
> size ligand atomRadius +.5
Changed 0 atom radii
> size ligand atomRadius +.5
Changed 0 atom radii
> size ligand atomRadius +.5
Changed 0 atom radii
> size ligand atomRadius +.5
Changed 0 atom radii
> size ligand atomRadius +.5
Changed 0 atom radii
> size ligand atomRadius +.5
Changed 0 atom radii
> style sel sphere
Changed 10 atom styles
> select clear
> select /A:1803@MG
1 atom, 1 residue, 1 model selected
> select clear
> select /M:46
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
43 atoms, 42 bonds, 6 residues, 1 model selected
> select up
508 atoms, 515 bonds, 65 residues, 1 model selected
> color sel #945200ff
> color sel #941751ff
> color sel #942193ff
> select clear
> select /M:201@ZN
1 atom, 1 residue, 1 model selected
> color sel byhetero
> select clear
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/overall-
> sideview.png width 3000 height 2001 supersample 3
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/overall-
> sideview.png width 3000 height 2001 supersample 3 transparentBackground true
> select down
Nothing selected
> view matrix
camera position:
0.33446,-0.65246,-0.68002,-118.46,0.91892,0.38588,0.08172,214.79,0.20909,-0.65222,0.72862,514.57
model positions: #1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1,1,0,0,0,0,1,0,0,0,0,1,0
> view spec
Expected an objects specifier or a view name or a keyword
> view matrix camera
> -0.5363,0.14021,-0.8323,-333.85,0.021991,0.98809,0.15228,266.48,0.84374,0.063364,-0.533,-132.16
> select clear
[Repeated 1 time(s)]
> select /A
11023 atoms, 11217 bonds, 5 pseudobonds, 1403 residues, 2 models selected
> select add /D:136
11027 atoms, 11220 bonds, 5 pseudobonds, 1404 residues, 2 models selected
> select up
11070 atoms, 11263 bonds, 5 pseudobonds, 1410 residues, 2 models selected
> select up
12293 atoms, 12496 bonds, 5 pseudobonds, 1562 residues, 2 models selected
> select add /G:153
12302 atoms, 12504 bonds, 5 pseudobonds, 1563 residues, 2 models selected
> select up
12321 atoms, 12523 bonds, 5 pseudobonds, 1566 residues, 2 models selected
> select up
13633 atoms, 13864 bonds, 5 pseudobonds, 1733 residues, 2 models selected
> select add /H:109
13642 atoms, 13872 bonds, 5 pseudobonds, 1734 residues, 2 models selected
> select up
13656 atoms, 13886 bonds, 5 pseudobonds, 1736 residues, 2 models selected
> select
40290 atoms, 41221 bonds, 16 pseudobonds, 4918 residues, 2 models selected
> select subtract /O:1095
40285 atoms, 41217 bonds, 16 pseudobonds, 4917 residues, 2 models selected
> select subtract /O:1556
40280 atoms, 41213 bonds, 16 pseudobonds, 4916 residues, 2 models selected
> select down
40280 atoms, 41213 bonds, 16 pseudobonds, 4916 residues, 2 models selected
> select down
40280 atoms, 41213 bonds, 16 pseudobonds, 4916 residues, 2 models selected
> select subtract /O:1097
40272 atoms, 41206 bonds, 16 pseudobonds, 4915 residues, 2 models selected
> select subtract /O:1096
40263 atoms, 41198 bonds, 16 pseudobonds, 4914 residues, 2 models selected
> select down
40263 atoms, 41198 bonds, 16 pseudobonds, 4914 residues, 2 models selected
> select down
40263 atoms, 41198 bonds, 16 pseudobonds, 4914 residues, 2 models selected
> select down
40263 atoms, 41198 bonds, 16 pseudobonds, 4914 residues, 2 models selected
> select subtract /Y:84
40258 atoms, 41194 bonds, 16 pseudobonds, 4913 residues, 2 models selected
> select add /Y:84
40263 atoms, 41198 bonds, 16 pseudobonds, 4914 residues, 2 models selected
> select subtract /Y:34
40258 atoms, 41194 bonds, 16 pseudobonds, 4913 residues, 2 models selected
> select down
40258 atoms, 41194 bonds, 16 pseudobonds, 4913 residues, 2 models selected
> select down
40258 atoms, 41194 bonds, 16 pseudobonds, 4913 residues, 2 models selected
> select down
40258 atoms, 41194 bonds, 16 pseudobonds, 4913 residues, 2 models selected
> select clear
> select /A-L #1
40290 atoms, 41221 bonds, 16 pseudobonds, 4918 residues, 2 models selected
> select #1 /A-L
30823 atoms, 31371 bonds, 13 pseudobonds, 3889 residues, 2 models selected
> surface (#!1 & sel)
> surface hidePatches (#!1 & sel)
> surface (#!1 & sel)
> color (#!1 & sel) dark gray
> transparency (#!1 & sel) 50
> cartoon hide (#!1 & sel)
> select clear
> cartoon
> surface hidePatches
> select #1 /A-L
30823 atoms, 31371 bonds, 13 pseudobonds, 3889 residues, 2 models selected
> select clear
> turn x 90
> turn x- 90
Expected an axis vector or a keyword
> turn x -90
[Repeated 1 time(s)]
> turn y 90
> turn y -90
[Repeated 1 time(s)]
> turn y 90
> turn x -90
> turn x 90
[Repeated 1 time(s)]
> turn x -90
> turn y -90
> set silhouetteDepthJump 0.05
> set silhouetteDepthJump 0.1
> set silhouetteDepthJump 0.2
> set silhouetteDepthJump 0.01
> set silhouetteDepthJump 0.005
> set silhouetteDepthJump 0.008
> set silhouetteDepthJump 0.05
> lighting flat
> select /A:1803@MG
1 atom, 1 residue, 1 model selected
> color sel magenta
> select clear
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting flat
[Repeated 1 time(s)]
> lighting soft
> lighting simple
> lighting full
> graphics silhouettes false
> graphics silhouettes true
> lighting flat
[Repeated 1 time(s)]
> lighting full
> lighting soft
> lighting simple
> lighting soft
> lighting full
> lighting shadows false
> lighting full
> lighting simple
[Repeated 2 time(s)]
> graphics silhouettes false
> lighting simple
> lighting flat
> lighting soft
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting shadows true
> lighting shadows false
> lighting flat
[Repeated 1 time(s)]
> lighting soft
> set bgColor white
> lighting simple
> lighting soft
> lighting full
> lighting flat
> lighting shadows true intensity 0.5
> lighting soft
> graphics silhouettes false
> lighting simple
> lighting soft
> lighting full
> lighting shadows false
> graphics silhouettes true
> select #1 /A-L
30823 atoms, 31371 bonds, 13 pseudobonds, 3889 residues, 2 models selected
> color (#!1 & sel) light gray
> color (#!1 & sel) byhetero
> select clear
> select /A:1803@MG
1 atom, 1 residue, 1 model selected
> color sel magenta
> select clear
> lighting flat
> lighting soft
> lighting shadows true intensity 0.5
> lighting shadows false
> select /A:1801@ZN
1 atom, 1 residue, 1 model selected
> select clear
> select ions
10 atoms, 10 residues, 1 model selected
> size ballScale factor +0.3
Invalid "ballScale" argument: Expected a number
> size ballScale 1.8
Changed 1 ball scales
> select clear
> size ballScale 5
Changed 1 ball scales
> size ballScale 5 #1
Expected a keyword
> size ballScale 10
Changed 1 ball scales
> size ballScale 0.3
Changed 1 ball scales
> select clear
> lighting soft
[Repeated 2 time(s)]
> lighting full
> lighting shadows false
> lighting soft
> lighting simple
> lighting soft
> lighting full
[Repeated 1 time(s)]
> lighting shadows false
> graphics silhouettes false
> graphics silhouettes true
> lighting flat
> lighting soft
[Repeated 1 time(s)]
> lighting full
> lighting soft
> lighting flat
> lighting soft
> lighting full
> lighting soft
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/overall-
> sideview.png width 3000 height 2650 supersample 3 transparentBackground true
> view matrix
camera position:
0.13992,-0.83235,-0.53629,-10.69,0.9881,0.15229,0.021434,193.07,0.063828,-0.53291,0.84376,501.01
model positions:
#1,1,0,0,0,0,1,0,0,0,0,1,0,#1.1,1,0,0,0,0,1,0,0,0,0,1,0,#1.2,1,0,0,0,0,1,0,0,0,0,1,0,#1.3,1,0,0,0,0,1,0,0,0,0,1,0,#1.4,1,0,0,0,0,1,0,0,0,0,1,0,#1.5,1,0,0,0,0,1,0,0,0,0,1,0,#1.6,1,0,0,0,0,1,0,0,0,0,1,0,#1.7,1,0,0,0,0,1,0,0,0,0,1,0,#1.8,1,0,0,0,0,1,0,0,0,0,1,0,#1.9,1,0,0,0,0,1,0,0,0,0,1,0,#1.10,1,0,0,0,0,1,0,0,0,0,1,0,#1.11,1,0,0,0,0,1,0,0,0,0,1,0,#1.12,1,0,0,0,0,1,0,0,0,0,1,0,#1.13,1,0,0,0,0,1,0,0,0,0,1,0
> turn y 90
> turn x 90
> select /P:21
23 atoms, 25 bonds, 1 residue, 1 model selected
> select up
626 atoms, 700 bonds, 29 residues, 1 model selected
> cartoon style sel modeHelix tube sides 20
> hide (sel-residues & (protein|nucleic)) target a
> cartoon hide sel-residues
> show (sel-residues & backbone) target ab
> cartoon sel
> hide sel target a
> nucleotides sel tube/slab
[Repeated 1 time(s)]
> cartoon nucrib #1
Expected an atoms specifier or a keyword
> ribbon style x rect
> ribbon style x tube
> cartoon style xsection tube
Invalid "xsection" argument: Should be one of 'barbell', 'oval', 'piping',
'rectangle', 'round', or 'square'
> ribbon style x nucrib
> cartoon style xsection nucrib
Invalid "xsection" argument: Should be one of 'barbell', 'oval', 'piping',
'rectangle', 'round', or 'square'
> select clear
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/overall-
> topview.png width 3000 height 2650 supersample 3 transparentBackground true
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/overall-
> figure.cxs
——— End of log from Thu Apr 20 13:54:59 2023 ———
opened ChimeraX session
> select #1 /A-L
30823 atoms, 31371 bonds, 13 pseudobonds, 3889 residues, 2 models selected
> ui tool show "Color Actions"
> color (#!1 & sel) #d6d6d6ff
> color (#!1 & sel) #c0c0c0ff
> color (#!1 & sel) #a9a9a9ff
> color (#!1 & sel) #c0c0c0ff
> select clear
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/overall-
> topview.png width 3000 height 2650 supersample 4 transparentBackground true
> turn x -90
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> select down
Nothing selected
> turn y -90
[Repeated 1 time(s)]
> turn y 90
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/overall-
> sideview.png width 3000 height 2650 supersample 4 transparentBackground true
> select /Y:89
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
45 atoms, 44 bonds, 6 residues, 1 model selected
> select up
739 atoms, 755 bonds, 98 residues, 1 model selected
> color sel #d4fb79ff
> color sel #00f900ff
> color sel #8efa00ff
> color sel #929000ff
> color sel #919000ff
> color sel #889000ff
> color sel #729000ff
> color sel #659000ff
> color sel #5e9000ff
> color sel #579000ff
> color sel #519000ff
> color sel #4d9000ff
> color sel #469000ff
> color sel #3f9000ff
[Repeated 1 time(s)]
> color sel #429000ff
> color sel #479000ff
> color sel #6a9000ff
> color sel #6c9000ff
> color sel #4a9000ff
> color sel #399000ff
[Repeated 1 time(s)]
> color sel #3f9000ff
> color sel #469000ff
> color sel #4c9000ff
> color sel #549000ff
> color sel #569000ff
> color sel #5e9000ff
> color sel #669000ff
> color sel #679000ff
> color sel #689000ff
> color sel #6c9000ff
> color sel #6e9000ff
> color sel #6f9000ff
> color sel #709000ff
> color sel #719000ff
[Repeated 1 time(s)]
> color sel #719100ff
> color sel #719200ff
> color sel #719400ff
> color sel #719900ff
> color sel #719b00ff
> color sel #719d00ff
> color sel #71a100ff
> color sel #71a500ff
> color sel #71a900ff
> color sel #71b400ff
> color sel #71be00ff
[Repeated 1 time(s)]
> color sel #71c100ff
> color sel #71bd00ff
> color sel #71b500ff
> color sel #71b400ff
> color sel #71b000ff
> color sel #71ae00ff
[Repeated 1 time(s)]
> color sel #71b600ff
> color sel #71b900ff
> color sel #71ba00ff
> color sel #71bd00ff
> color sel #71be00ff
> color sel #71c100ff
> color sel #71c200ff
[Repeated 1 time(s)]
> color sel #71c000ff
> color sel #71be00ff
[Repeated 2 time(s)]
> color sel #71be01ff
[Repeated 1 time(s)]
> color sel #71be04ff
> color sel #71be0aff
> color sel #71be0cff
> color sel #71be0dff
> color sel #71be11ff
> color sel #71be17ff
> color sel #71be1bff
> color sel #71be1fff
> color sel #71be26ff
> color sel #71be2cff
> color sel #71be2eff
> color sel #71be31ff
> color sel #71be35ff
> color sel #71be38ff
> color sel #71be3bff
> color sel #71be3eff
> color sel #71be41ff
> color sel #71be45ff
> color sel #71be4cff
> color sel #71be4fff
> color sel #71be50ff
> color sel #71be54ff
> color sel #71be57ff
> color sel #71be59ff
> color sel #71be5cff
> color sel #71be5fff
> color sel #71be62ff
[Repeated 1 time(s)]
> color sel #71be64ff
> color sel #71be67ff
> color sel #71be6dff
> color sel #71be6aff
> color sel #71be69ff
> color sel #71be62ff
> color sel #71be5bff
> color sel #71be58ff
> color sel #71be56ff
> color sel #71be55ff
[Repeated 1 time(s)]
> color sel #71be53ff
> color sel #71be52ff
> color sel #71be4eff
[Repeated 2 time(s)]
> color sel #71be49ff
> color sel #71be44ff
> color sel #71be43ff
> color sel #71be42ff
> color sel #71be3cff
> select clear
> color #71be3cff
> color #69be3cff
> color #52be3cff
> color #4ebe3cff
> color #4dbe3cff
> undo
[Repeated 4 time(s)]
> select clear
> select /Y:88
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
45 atoms, 44 bonds, 6 residues, 1 model selected
> select up
739 atoms, 755 bonds, 98 residues, 1 model selected
> color sel #4dbe3cff
> color sel #4dbe39ff
> color sel #4dbe29ff
> color sel #4dbe1dff
> color sel #4dbe11ff
> color sel #4dbe10ff
> color sel #4dbe0eff
> color sel #4dbe0dff
> color sel #4dbe04ff
> color sel #4dbe03ff
[Repeated 1 time(s)]
> color sel #4dbe02ff
> color sel #4dbe00ff
[Repeated 2 time(s)]
> color sel #4dbf00ff
> color sel #4dc300ff
> color sel #4dc500ff
> color sel #4dc600ff
> color sel #4dc700ff
> color sel #4dca00ff
> color sel #4dcc00ff
[Repeated 1 time(s)]
> color sel #4dce00ff
> color sel #4dcf00ff
> color sel #4dd000ff
> color sel #4dd100ff
> color sel #4dd300ff
> color sel #4dd600ff
> color sel #4dd900ff
> color sel #4ddc00ff
> color sel #4ddd00ff
> color sel #4de400ff
[Repeated 1 time(s)]
> color sel #4de500ff
> color sel #4de400ff
> color sel #4de100ff
> color sel #4dc600ff
> color sel #4dc300ff
> color sel #4dc100ff
> color sel #4dbd00ff
> color sel #4dbb00ff
> color sel #4db700ff
> color sel #4db300ff
[Repeated 3 time(s)]
> color sel #4eb300ff
> color sel #51b300ff
> color sel #66b300ff
> color sel #6ab300ff
> color sel #70b300ff
> color sel #73b300ff
> color sel #7bb300ff
> color sel #7cb300ff
> color sel #86b300ff
> color sel #8ab300ff
> color sel #8bb300ff
> color sel #8cb300ff
> color sel #8bb300ff
> color sel #86b300ff
> color sel #83b300ff
> color sel #80b300ff
> color sel #76b300ff
> color sel #72b300ff
> color sel #58b300ff
> color sel #55b300ff
> color sel #49b300ff
> color sel #45b300ff
> color sel #41b300ff
> color sel #3eb300ff
> color sel #39b300ff
> color sel #35b300ff
> color sel #32b300ff
[Repeated 1 time(s)]
> color sel #27b300ff
[Repeated 1 time(s)]
> color sel #25b300ff
> color sel #1db300ff
[Repeated 1 time(s)]
> color sel #20b300ff
> color sel #25b300ff
> color sel #29b300ff
> color sel #58f704ff
> color sel #5bf704ff
> color sel #69f704ff
> color sel #83f704ff
> color sel #89f704ff
> color sel #8cf704ff
> color sel #90f704ff
> color sel #94f704ff
> color sel #95f704ff
[Repeated 1 time(s)]
> color sel #92f704ff
> color sel #87f704ff
> color sel #83f704ff
> color sel #81f704ff
> color sel #7ef704ff
> color sel #6ef704ff
> color sel #66f704ff
> color sel #64f704ff
> color sel #59f704ff
> color sel #57f704ff
[Repeated 1 time(s)]
> color sel #56f704ff
> color sel #53f704ff
> color sel #57ad47ff
> color sel #57ac47ff
> color sel #57a947ff
> color sel #57a447ff
> color sel #57a147ff
> color sel #57a047ff
> color sel #579c47ff
> color sel #579b47ff
[Repeated 1 time(s)]
> color sel #579c47ff
[Repeated 1 time(s)]
> color sel #579e47ff
> color sel #57b447ff
> color sel #57ba47ff
> color sel #57be47ff
[Repeated 1 time(s)]
> color sel #57b647ff
> color sel #57a647ff
> color sel #66ff66ff
> color sel #ccff99ff
> color sel #99cc66ff
> color sel #99cc33ff
> color sel #66ff33ff
> color sel #66cc00ff
> select up
40290 atoms, 41221 bonds, 4918 residues, 1 model selected
> select down
739 atoms, 755 bonds, 98 residues, 13 models selected
> color sel #99ff33ff
> color sel #99ff00ff
> color sel #ccff66ff
> color sel #ccff33ff
> color sel #ccff00ff
> color sel #99cc00ff
> color sel #ccff99ff
> color sel #99cc66ff
> select clear
> select /A:1803@MG
1 atom, 1 residue, 1 model selected
> color sel magenta
> select clear
> ui tool show "Side View"
> turn y 90
> turn x 90
> undo
[Repeated 1 time(s)]
> turn x 90
> select down
Nothing selected
> select down
Nothing selected
> turn y 90
> undo
[Repeated 3 time(s)]
> turn x 90
> turn y 90
> turn y -90
> select /O:1095
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /O:1098
5 atoms, 4 bonds, 1 residue, 1 model selected
> select up
123 atoms, 123 bonds, 14 residues, 1 model selected
> select up
5523 atoms, 5625 bonds, 690 residues, 1 model selected
> color sel #fbcc66ff
> color sel #fbec66ff
> color sel #fbec5dff
> select clear
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/overall-
> topview.png width 3000 height 2255 supersample 4 transparentBackground true
> turn x -90
> turn y -90
> ui tool show "Side View"
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/overall-
> sideview.png width 3000 height 2255 supersample 4 transparentBackground true
[Repeated 1 time(s)]
> turn y 90
> turn x 90
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/overall-
> figure.cxs
> hide #!1 models
> open
> /Users/srengac/Documents/Phenix/Sen1/RealSpaceRefine_70/Sen1-RNA_ADPBeF3-RSR68-coot-0.updated_real_space_refined.pdb
Chain information for
Sen1-RNA_ADPBeF3-RSR68-coot-0.updated_real_space_refined.pdb #2
---
Chain | Description
O | No description available
P | No description available
> select #2/O:1536
17 atoms, 16 bonds, 1 residue, 1 model selected
> select up
526 atoms, 527 bonds, 31 residues, 1 model selected
> select up
11144 atoms, 11246 bonds, 694 residues, 1 model selected
> select clear
> select #2/O:1422@HH12
1 atom, 1 residue, 1 model selected
> select clear
> select H
5739 atoms, 708 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> open
> /Users/srengac/Documents/Phenix/Sen1/RealSpaceRefine_62/Sen1-alone_noATP-
> RSR59-coot-0.updated_real_space_refined.pdb
Chain information for Sen1-alone_noATP-
RSR59-coot-0.updated_real_space_refined.pdb #3
---
Chain | Description
O | No description available
P | No description available
> select #3/O:1677
7 atoms, 6 bonds, 1 residue, 1 model selected
> select H
5696 atoms, 703 residues, 1 model selected
> delete atoms sel
> delete bonds sel
> ui tool show Matchmaker
> matchmaker #!2 to #3/O pairing bs
Parameters
---
Chain pairing | bs
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Sen1-alone_noATP-RSR59-coot-0.updated_real_space_refined.pdb, chain
O (#3) with Sen1-RNA_ADPBeF3-RSR68-coot-0.updated_real_space_refined.pdb,
chain O (#2), sequence alignment score = 3471.6
RMSD between 452 pruned atom pairs is 0.557 angstroms; (across all 690 pairs:
4.886)
> hide #!2 models
> select #3/O:1536
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
228 atoms, 229 bonds, 27 residues, 1 model selected
> select up
5523 atoms, 5625 bonds, 690 residues, 1 model selected
> color sel dark gray
> select clear
[Repeated 2 time(s)]
> lighting flat
[Repeated 1 time(s)]
> lighting soft
> select #3/O:1098
5 atoms, 4 bonds, 1 residue, 1 model selected
> select clear
> select #3/O
5523 atoms, 5625 bonds, 2 pseudobonds, 690 residues, 2 models selected
> select clear
> select #3/P
278 atoms, 310 bonds, 13 residues, 1 model selected
> color sel red
> color sel dark gray
> select clear
> hide #!3 models
> show #!3 models
> show #!2 models
> select clear
> select #2/O:1532
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
266 atoms, 267 bonds, 31 residues, 1 model selected
> select up
5557 atoms, 5659 bonds, 694 residues, 1 model selected
> color sel #fbec5dff
> select clear
> select #3/O:1869
9 atoms, 8 bonds, 1 residue, 1 model selected
> select up
86 atoms, 86 bonds, 10 residues, 1 model selected
> select up
5523 atoms, 5625 bonds, 690 residues, 1 model selected
> color sel #fbec5dff
> select clear
> select #3/P:12
22 atoms, 24 bonds, 1 residue, 1 model selected
> select up
278 atoms, 310 bonds, 13 residues, 1 model selected
> ui tool show "Color Actions"
> color sel dark salmon
> color sel light coral
> color sel #ff7e79ff
> select clear
> select #2/P:13
22 atoms, 24 bonds, 1 residue, 1 model selected
> select up
276 atoms, 307 bonds, 13 residues, 1 model selected
> color sel red
> select clear
> hide #!3 models
> select #2/O:1533
11 atoms, 10 bonds, 1 residue, 1 model selected
> select up
266 atoms, 267 bonds, 31 residues, 1 model selected
> select up
5557 atoms, 5659 bonds, 694 residues, 1 model selected
> color sel #929000ff
> select clear
> color #2 #666633ff
> select clear
> select #2/P:12
20 atoms, 21 bonds, 1 residue, 1 model selected
> select up
276 atoms, 307 bonds, 13 residues, 1 model selected
> select up
5865 atoms, 5995 bonds, 710 residues, 1 model selected
> select down
276 atoms, 307 bonds, 13 residues, 1 model selected
> color sel red
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
27 atoms, 29 bonds, 1 residue, 1 model selected
> color sel byelement
> select clear
> select #2/O:1532
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
266 atoms, 267 bonds, 31 residues, 1 model selected
> select up
5557 atoms, 5659 bonds, 694 residues, 1 model selected
> color sel byelement
> select clear
> cartoon style #2 xsection oval modeHelix default
> cartoon style #2 modeHelix tube sides 20
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
4 atoms, 2 bonds, 2 residues, 1 model selected
> select up
6 atoms, 3 bonds, 3 residues, 1 model selected
> select up
8 atoms, 4 bonds, 4 residues, 1 model selected
> select clear
> select #2/7:902@MG
1 atom, 1 residue, 1 model selected
> color sel magenta
> select clear
> select #2/7:903@F3
1 atom, 1 residue, 1 model selected
> select #2/7:903@BE
1 atom, 1 residue, 1 model selected
> select #2/7:903@F3
1 atom, 1 residue, 1 model selected
> select add #2/7:903@BE
2 atoms, 1 residue, 1 model selected
> select add #2/7:903@F2
3 atoms, 1 residue, 1 model selected
> select add #2/7:903@F1
4 atoms, 1 residue, 1 model selected
> color sel byelement
> select clear
> select #2/O:1464
11 atoms, 10 bonds, 1 residue, 1 model selected
> select up
69 atoms, 68 bonds, 8 residues, 1 model selected
> select up
5557 atoms, 5659 bonds, 694 residues, 1 model selected
> select clear
> select #2/O:1097
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
123 atoms, 123 bonds, 14 residues, 1 model selected
> select up
5557 atoms, 5659 bonds, 694 residues, 1 model selected
> hide sel target a
> select clear
> select add #2/O:1552
11 atoms, 10 bonds, 1 residue, 1 model selected
> select up
266 atoms, 267 bonds, 31 residues, 1 model selected
> select up
5557 atoms, 5659 bonds, 694 residues, 1 model selected
> color sel #999966ff
> select clear
> show #!3 models
> select #3/O:1280
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
75 atoms, 75 bonds, 9 residues, 1 model selected
> select up
5523 atoms, 5625 bonds, 690 residues, 1 model selected
> cartoon style sel modeHelix tube sides 20
> select clear
> toolshed show
Downloading bundle ChimeraX_XMAS-1.1.2-py3-none-any.whl
[Repeated 1 time(s)]
Errors may have occurred when running pip:
pip standard error:
\---
WARNING: Value for scheme.platlib does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>
distutils: /Users/srengac/Library/Application Support/ChimeraX/1.3/site-
packages
sysconfig: /Users/srengac/Library/Python/3.9/lib/python/site-packages
WARNING: Value for scheme.purelib does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>
distutils: /Users/srengac/Library/Application Support/ChimeraX/1.3/site-
packages
sysconfig: /Users/srengac/Library/Python/3.9/lib/python/site-packages
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>
distutils: /Users/srengac/Library/Application
Support/ChimeraX/include/python3.9/tzdata
sysconfig: /Users/srengac/Library/Python/3.9/include/tzdata
WARNING: Value for scheme.scripts does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>
distutils: /Users/srengac/Library/Application Support/ChimeraX/bin
sysconfig: /Users/srengac/Library/Python/3.9/bin
WARNING: Value for scheme.data does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>
distutils: /Users/srengac/Library/Application Support/ChimeraX
sysconfig: /Users/srengac/Library/Python/3.9
WARNING: Additional context:
user = True
home = None
root = None
prefix = None
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>
distutils: /Users/srengac/Library/Application
Support/ChimeraX/include/python3.9/pandas
sysconfig: /Users/srengac/Library/Python/3.9/include/pandas
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>
distutils: /Users/srengac/Library/Application
Support/ChimeraX/include/python3.9/et-xmlfile
sysconfig: /Users/srengac/Library/Python/3.9/include/et-xmlfile
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>
distutils: /Users/srengac/Library/Application
Support/ChimeraX/include/python3.9/seaborn
sysconfig: /Users/srengac/Library/Python/3.9/include/seaborn
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>
distutils: /Users/srengac/Library/Application
Support/ChimeraX/include/python3.9/qtrangeslider
sysconfig: /Users/srengac/Library/Python/3.9/include/qtrangeslider
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>
distutils: /Users/srengac/Library/Application
Support/ChimeraX/include/python3.9/openpyxl
sysconfig: /Users/srengac/Library/Python/3.9/include/openpyxl
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>
distutils: /Users/srengac/Library/Application
Support/ChimeraX/include/python3.9/ChimeraX-XMAS
sysconfig: /Users/srengac/Library/Python/3.9/include/ChimeraX-XMAS
WARNING: Value for scheme.headers does not match. Please report this to
<https://github.com/pypa/pip/issues/10151>
distutils: /Users/srengac/Library/Application
Support/ChimeraX/include/python3.9/UNKNOWN
sysconfig: /Users/srengac/Library/Python/3.9/include/UNKNOWN
WARNING: You are using pip version 21.2.4; however, version 23.1.2 is
available.
You should consider upgrading via the
'/Applications/ChimeraX-1.3.app/Contents/MacOS/ChimeraX -m pip install
--upgrade pip' command.
\---
pip standard output:
\---
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/
Processing /Users/srengac/Downloads/ChimeraX_XMAS-1.1.2-py3-none-any.whl
Requirement already satisfied: ChimeraX-Core~=1.3 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-XMAS==1.1.2) (1.3)
Collecting openpyxl
Downloading openpyxl-3.1.2-py2.py3-none-any.whl (249 kB)
Collecting pandas
Downloading pandas-2.0.1-cp39-cp39-macosx_10_9_x86_64.whl (11.8 MB)
Collecting qtrangeslider
Downloading QtRangeSlider-0.1.5-py3-none-any.whl (33 kB)
Collecting seaborn
Downloading seaborn-0.12.2-py3-none-any.whl (293 kB)
Requirement already satisfied: ChimeraX-UI~=1.3 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-XMAS==1.1.2) (1.13.7)
Requirement already satisfied: ChimeraX-MouseModes~=1.0 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-UI~=1.3->ChimeraX-XMAS==1.1.2) (1.1)
Requirement already satisfied: ChimeraX-Graphics~=1.0 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-UI~=1.3->ChimeraX-XMAS==1.1.2) (1.1)
Requirement already satisfied: ChimeraX-SelInspector~=1.0 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-UI~=1.3->ChimeraX-XMAS==1.1.2) (1.0)
Requirement already satisfied: ChimeraX-Geometry~=1.0 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Graphics~=1.0->ChimeraX-UI~=1.3->ChimeraX-XMAS==1.1.2)
(1.1)
Requirement already satisfied: ChimeraX-Arrays~=1.0 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-Graphics~=1.0->ChimeraX-UI~=1.3->ChimeraX-XMAS==1.1.2)
(1.0)
Requirement already satisfied: ChimeraX-ItemsInspection~=1.0 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from ChimeraX-SelInspector~=1.0->ChimeraX-UI~=1.3->ChimeraX-
XMAS==1.1.2) (1.0)
Collecting et-xmlfile
Downloading et_xmlfile-1.1.0-py3-none-any.whl (4.7 kB)
Collecting tzdata>=2022.1
Downloading tzdata-2023.3-py2.py3-none-any.whl (341 kB)
Requirement already satisfied: pytz>=2020.1 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from pandas->ChimeraX-XMAS==1.1.2) (2021.3)
Requirement already satisfied: numpy>=1.20.3 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from pandas->ChimeraX-XMAS==1.1.2) (1.21.2)
Requirement already satisfied: python-dateutil>=2.8.2 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from pandas->ChimeraX-XMAS==1.1.2) (2.8.2)
Requirement already satisfied: six>=1.5 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from python-dateutil>=2.8.2->pandas->ChimeraX-XMAS==1.1.2) (1.16.0)
Requirement already satisfied: matplotlib!=3.6.1,>=3.1 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from seaborn->ChimeraX-XMAS==1.1.2) (3.4.3)
Requirement already satisfied: pillow>=6.2.0 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from matplotlib!=3.6.1,>=3.1->seaborn->ChimeraX-XMAS==1.1.2) (8.3.2)
Requirement already satisfied: kiwisolver>=1.0.1 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from matplotlib!=3.6.1,>=3.1->seaborn->ChimeraX-XMAS==1.1.2) (1.3.2)
Requirement already satisfied: cycler>=0.10 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from matplotlib!=3.6.1,>=3.1->seaborn->ChimeraX-XMAS==1.1.2)
(0.11.0)
Requirement already satisfied: pyparsing>=2.2.1 in
/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages (from matplotlib!=3.6.1,>=3.1->seaborn->ChimeraX-XMAS==1.1.2) (3.0.6)
Installing collected packages: tzdata, pandas, et-xmlfile, seaborn,
qtrangeslider, openpyxl, ChimeraX-XMAS
Successfully installed ChimeraX-XMAS-1.1.2 et-xmlfile-1.1.0 openpyxl-3.1.2
pandas-2.0.1 qtrangeslider-0.1.5 seaborn-0.12.2 tzdata-2023.3
\---
Successfully installed ChimeraX-XMAS-1.1.2 et-xmlfile-1.1.0 openpyxl-3.1.2
pandas-2.0.1 qtrangeslider-0.1.5 seaborn-0.12.2 tzdata-2023.3
Installed ChimeraX-XMAS (1.1.2)
> select #3/O:1653
7 atoms, 6 bonds, 1 residue, 1 model selected
> hide #!2 models
> select add #3/O:1652
15 atoms, 13 bonds, 2 residues, 1 model selected
> show (sel-residues & sidechain) target ab
> color sel byelement
> color sel byhetero
> undo
[Repeated 1 time(s)]
> color sel byhetero
> select clear
> show #!2 models
> hide #!3 models
> select #2/O:1653
7 atoms, 6 bonds, 1 residue, 1 model selected
> select add #2/O:1652
15 atoms, 13 bonds, 2 residues, 1 model selected
> show (sel-residues & sidechain) target ab
> color sel byhetero
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
27 atoms, 29 bonds, 1 residue, 1 model selected
> select add #2/7:903@F3
28 atoms, 29 bonds, 2 residues, 1 model selected
> select add #2/7:903@BE
29 atoms, 29 bonds, 2 residues, 1 model selected
> select add #2/7:903@F2
30 atoms, 29 bonds, 2 residues, 1 model selected
> color sel #666633ff
> color sel byhetero
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
27 atoms, 29 bonds, 1 residue, 1 model selected
> color sel #999966ff
> color sel byhetero
> select clear
> show #!3 models
> select #2/P:13
22 atoms, 24 bonds, 1 residue, 1 model selected
> select up
276 atoms, 307 bonds, 13 residues, 1 model selected
> select add #3/P:13
298 atoms, 331 bonds, 14 residues, 2 models selected
> select up
554 atoms, 617 bonds, 26 residues, 2 models selected
> nucleotides sel fill
> select clear
> select up
20 atoms, 21 bonds, 1 residue, 1 model selected
> select up
278 atoms, 310 bonds, 13 residues, 1 model selected
> color sel #ff7e79ff
> color sel #ffcc99ff
> select clear
[Repeated 1 time(s)]
> ui tool show ViewDockX
No suitable models found for ViewDockX
> ui tool show Contacts
> hide #!2 models
> select #3/O:1206
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
56 atoms, 55 bonds, 7 residues, 1 model selected
> select up
5523 atoms, 5625 bonds, 690 residues, 1 model selected
> select up
5801 atoms, 5935 bonds, 703 residues, 1 model selected
> ui tool show Contacts
> contacts distanceOnly 4.0 color #000000
285840 distances
> contacts distanceOnly 4.0 intraModel false intraMol false color #000000
212105 distances
> contacts distanceOnly 4.0 interModel false intraMol false color #000000
11750 distances
> close #4
> hide #!3 models
> open /Users/srengac/Documents/Phenix/Sen1/Maps/19Jan2023_noATP/final-
> pdb/Final-final/Sen1-RNA_noATP.pdb
Chain information for Sen1-RNA_noATP.pdb #4
---
Chain | Description
C | No description available
O | No description available
P | No description available
> select #4/P:13
22 atoms, 24 bonds, 1 residue, 1 model selected
> select up
278 atoms, 310 bonds, 13 residues, 1 model selected
> nucleotides sel fill
> color sel red
> select clear
> select #4/C:157
6 atoms, 5 bonds, 1 residue, 1 model selected
> select up
89 atoms, 88 bonds, 12 residues, 1 model selected
> select up
2078 atoms, 2116 bonds, 264 residues, 1 model selected
> cartoon hide sel
> select clear
> cartoon style #4 modeHelix tube sides 20
> select #4/O:1534
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #4/O:1201
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
62 atoms, 63 bonds, 8 residues, 1 model selected
> select up
5523 atoms, 5625 bonds, 690 residues, 1 model selected
> undo
> color sel #fbec5dff
> select clear
> select #4/O:1201
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
62 atoms, 63 bonds, 8 residues, 1 model selected
> select up
5523 atoms, 5625 bonds, 690 residues, 1 model selected
> color sel #fbec5dff
> select clear
> ui tool show Contacts
> contacts distanceOnly 4.0 interModel false intraMol false color #000000
> dashes 5
12678 distances
> select #4/O:1804
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #4/O:1804
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #4/O:1805
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #4/O:1804
6 atoms, 5 bonds, 1 residue, 1 model selected
Drag select of 3 residues
> select clear
> select #4/O:1804
6 atoms, 5 bonds, 1 residue, 1 model selected
> select add #4/O:1805
13 atoms, 11 bonds, 2 residues, 1 model selected
> select add #4/O:1806
17 atoms, 14 bonds, 3 residues, 1 model selected
> select add #4/O:1714
25 atoms, 21 bonds, 4 residues, 1 model selected
> select add #4/O:1713
32 atoms, 27 bonds, 5 residues, 1 model selected
Drag select of 1 residues
> select add #4/O:1714
32 atoms, 27 bonds, 1 pseudobond, 5 residues, 2 models selected
> select add #4/O:1753
43 atoms, 37 bonds, 1 pseudobond, 6 residues, 2 models selected
> select add #4/O:1751
50 atoms, 44 bonds, 3 pseudobonds, 7 residues, 2 models selected
> select add #4/O:1752
62 atoms, 56 bonds, 2 pseudobonds, 8 residues, 2 models selected
> select add #4/O:1781
70 atoms, 63 bonds, 2 pseudobonds, 9 residues, 2 models selected
> select add #4/O:1782
74 atoms, 66 bonds, 2 pseudobonds, 10 residues, 2 models selected
> select add #4/O:1624
81 atoms, 72 bonds, 2 pseudobonds, 11 residues, 2 models selected
> select add #4/O:1623
88 atoms, 78 bonds, 2 pseudobonds, 12 residues, 2 models selected
> select add #4/O:1411
95 atoms, 85 bonds, 2 pseudobonds, 13 residues, 2 models selected
> select add #4/O:1412
101 atoms, 90 bonds, 3 pseudobonds, 14 residues, 2 models selected
> select add #4/O:1287
110 atoms, 98 bonds, 3 pseudobonds, 15 residues, 2 models selected
> select add #4/O:1253
117 atoms, 104 bonds, 3 pseudobonds, 16 residues, 2 models selected
> select add #4/O:1254
126 atoms, 112 bonds, 3 pseudobonds, 17 residues, 2 models selected
> select add #4/O:1538
135 atoms, 120 bonds, 3 pseudobonds, 18 residues, 2 models selected
> select add #4/O:1541
141 atoms, 125 bonds, 4 pseudobonds, 19 residues, 2 models selected
> show (#!4 & sel-residues & sidechain) target ab
> color (#!4 & sel) byhetero
> select clear
> select #4/O:1623
7 atoms, 6 bonds, 1 residue, 1 model selected
> hide #5 models
> select clear
> contacts distanceOnly 4.5 interModel false intraMol false color #000000
> dashes 5
28047 distances
> show #5 models
> select #4/O:1538
9 atoms, 8 bonds, 1 residue, 1 model selected
> select clear
> select #4/O:1537
11 atoms, 10 bonds, 1 residue, 1 model selected
> show sel target ab
> color sel byhetero
> select clear
> hide #5 models
> select #4/O:1779
7 atoms, 6 bonds, 1 residue, 1 model selected
> show (sel-residues & sidechain) target ab
> color sel byhetero
> select clear
> hide #!4 models
> show #!3 models
> open /Users/srengac/Downloads/qlgzuizmyn.pqr.dx
Opened qlgzuizmyn.pqr.dx as #6, grid size 161,225,225, pixel 0.543,0.495,0.48,
shown at level -45.3,45.3, step 1, values float32
> show #!3 surfaces
> ui tool show "Surface Color"
> color electrostatic #6.1#6.2 map #6 palette
> -10,#ff0000:-3,#ffffff:-5,#0000ff
Map values for surface "surface": minimum -373.2, mean 9.608, maximum 423
Map values for surface "surface": minimum -361.1, mean -5.943, maximum 331.8
> color electrostatic #6.1#6.2 map #6 palette
> -10,#ff0000:-3,#ffffff:-5,#0000ff
Map values for surface "surface": minimum -373.2, mean 9.608, maximum 423
Map values for surface "surface": minimum -361.1, mean -5.943, maximum 331.8
> hide #!6 models
> show #!6 models
> hide #!3 models
> color electrostatic #6.1#6.2 map #6 palette -10,#ff0000:0,#ffffff:10,#0000ff
Map values for surface "surface": minimum -373.2, mean 9.608, maximum 423
Map values for surface "surface": minimum -361.1, mean -5.943, maximum 331.8
> color electrostatic #6.1#6.2 map #6 palette -5,#ff0000:0,#ffffff:5,#0000ff
Map values for surface "surface": minimum -373.2, mean 9.608, maximum 423
Map values for surface "surface": minimum -361.1, mean -5.943, maximum 331.8
> color electrostatic #6.1#6.2 map #6 palette -15,#ff0000:0,#ffffff:15,#0000ff
Map values for surface "surface": minimum -373.2, mean 9.608, maximum 423
Map values for surface "surface": minimum -361.1, mean -5.943, maximum 331.8
> show #!4 models
> hide #!4 models
> show #!4 models
> show #!4 surfaces
> hide #!4 models
> color electrostatic #3.2 map #6 palette -15,#ff0000:0,#ffffff:15,#0000ff
Map values for surface "Sen1-alone_noATP-
RSR59-coot-0.updated_real_space_refined.pdb_O SES surface": minimum -399.8,
mean -0.4522, maximum 434.8
> show #!3 models
> color electrostatic #3.2 map #6 palette -10,#ff0000:0,#ffffff:10,#0000ff
Map values for surface "Sen1-alone_noATP-
RSR59-coot-0.updated_real_space_refined.pdb_O SES surface": minimum -399.8,
mean -0.4522, maximum 434.8
> color electrostatic #3.2 map #6 palette -5,#ff0000:0,#ffffff:5,#0000ff
Map values for surface "Sen1-alone_noATP-
RSR59-coot-0.updated_real_space_refined.pdb_O SES surface": minimum -399.8,
mean -0.4522, maximum 434.8
> hide #!6 models
> volume #6 level 24.77 level 45.35
> volume #6 level 39.08 level 45.35
> turn x 180
> turn x -180
> turn y, 180
Expected an axis vector or a keyword
> turn y 180
> turn y -180
> turn x -180
> turn x 180
> turn z 180
> turn z -180
> turn y, 90
Expected an axis vector or a keyword
> turn y 90
[Repeated 3 time(s)]
> turn x, 90
Expected an axis vector or a keyword
> turn x 90
[Repeated 3 time(s)]
> turn z 90
[Repeated 3 time(s)]
> turn x -180
> turn x 180
> turn y -180
[Repeated 1 time(s)]
> turn x-30
Expected an axis vector or a keyword
> turn x -30
> turn y 60
> turn y -60
> turn y -180
> turn x -30
> turn x 30
> turn z 30
> turn x -30
[Repeated 21 time(s)]
> turn y -180
> turn x -30
[Repeated 20 time(s)]
> turn y -180
> turn x -30
[Repeated 9 time(s)]
> turn x 300
> turn y 180
> turn y -180
> turn x -300
> hide #!3 models
> open /Users/srengac/Downloads/2xzo-edit.pdb
Chain information for 2xzo-edit.pdb #7
---
Chain | Description
A | No description available
D | No description available
> view orient
> show #!7 surfaces
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> hide #!7 models
> show #!2 models
> hide #!2 models
> show #!3 models
> ui tool show Matchmaker
>
Missing command
>
Missing command
>
Missing command
> show #!7 models
> hide #!3 models
> open /Users/srengac/Downloads/1qll0kpcmk.pqr.dx
Opened 1qll0kpcmk.pqr.dx as #8, grid size 193,193,193, pixel
0.505,0.479,0.488, shown at level -47.6,47.6, step 1, values float32
> color electrostatic #7.2 map #8 palette -5,#ff0000:0,#ffffff:5,#0000ff
Map values for surface "2xzo-edit.pdb_A SES surface": minimum -371.2, mean
2.415, maximum 249
> hide #!8 models
> show #!4 models
> hide #!4 models
> color electrostatic #3.2 map #6 palette -5,#ff0000:0,#ffffff:5,#0000ff
Map values for surface "Sen1-alone_noATP-
RSR59-coot-0.updated_real_space_refined.pdb_O SES surface": minimum -399.8,
mean -0.4522, maximum 434.8
Map values for surface "cap far": minimum -318.6, mean 2.071, maximum 278.4
> color electrostatic #3.2 map #6 palette -5,#ff0000:0,#ffffff:5,#0000ff
Map values for surface "Sen1-alone_noATP-
RSR59-coot-0.updated_real_space_refined.pdb_O SES surface": minimum -399.8,
mean -0.4522, maximum 434.8
Map values for surface "cap far": minimum -318.6, mean 2.071, maximum 278.4
> show #!3 models
> ui tool show Matchmaker
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File
"/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 50, in <lambda>
data[0] == pself.attr_name and setattr(pself, "value", pself.get_attribute()))
File
"/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 339, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
AttributeError: 'NoneType' object has no attribute 'setChecked'
Error processing trigger "setting changed":
AttributeError: 'NoneType' object has no attribute 'setChecked'
File
"/Applications/ChimeraX-1.3.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/ui/options/options.py", line 339, in set_value
self.__button_group.button(self.values.index(value)).setChecked(True)
See log for complete Python traceback.
>
Missing command
>
Missing command
>
Missing command
>
Missing command
>
Missing command
>
Missing command
> hide #!6 models
> hide #!7 models
> hide #!3 models
> show #!2 models
> show #!4 models
> select #4
7879 atoms, 8051 bonds, 2071 pseudobonds, 967 residues, 3 models selected
> hide sel surfaces
> ~select #4
3 models selected
> select up
22 atoms, 24 bonds, 1 residue, 2 models selected
> select up
278 atoms, 310 bonds, 13 residues, 2 models selected
> color (#!4 & sel) #ffcc99ff
> color (#!4 & sel) #ff9966ff
> select clear
> select up
20 atoms, 21 bonds, 1 residue, 2 models selected
> select up
278 atoms, 310 bonds, 13 residues, 2 models selected
> color (#!4 & sel) #ff6600ff
> color (#!4 & sel) #ccccccff
> select clear
[Repeated 1 time(s)]
> select #4/O:1224
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
106 atoms, 109 bonds, 12 residues, 2 models selected
> select up
5523 atoms, 5625 bonds, 690 residues, 2 models selected
> color (#!4 & sel) #ccccccff
[Repeated 1 time(s)]
> select clear
> select #2/O:1532
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
266 atoms, 267 bonds, 31 residues, 1 model selected
> select up
5557 atoms, 5659 bonds, 694 residues, 1 model selected
> color sel #fbec5dff
> select clear
> select #4/O:1866
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
86 atoms, 86 bonds, 10 residues, 2 models selected
> select up
5523 atoms, 5625 bonds, 690 residues, 2 models selected
> color (#!4 & sel) byhetero
> select clear
> select #2/7:901@C2
1 atom, 1 residue, 1 model selected
> select up
27 atoms, 29 bonds, 1 residue, 1 model selected
> color sel byhetero
> color sel #fbec5dff
> color sel byhetero
> select clear
[Repeated 2 time(s)]
> select #4/P:12
22 atoms, 24 bonds, 1 residue, 1 model selected
> select up
42 atoms, 45 bonds, 2 residues, 3 models selected
> select up
554 atoms, 617 bonds, 26 residues, 3 models selected
> cartoon hide (#!2,4 & sel)
> hide (#!2,4 & sel) target a
> undo
[Repeated 1 time(s)]
> select clear
> save /Users/srengac/Downloads/TEST-MOVEMENT.png width 3000 height 2888
> supersample 4 transparentBackground true
> save /Users/srengac/Downloads/TEST-MOVEMENT.PNG.png width 3000 height 2888
> supersample 4 transparentBackground true
> save /Users/srengac/Downloads/test-movement.png width 3000 height 2888
> supersample 4 transparentBackground true
[Repeated 1 time(s)]
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/test-
> movement.cxs includeMaps true
——— End of log from Sun Apr 30 14:20:24 2023 ———
opened ChimeraX session
> select #4/O:1465
8 atoms, 7 bonds, 1 residue, 1 model selected
> select up
77 atoms, 76 bonds, 9 residues, 2 models selected
> select up
5523 atoms, 5625 bonds, 690 residues, 2 models selected
> hide (#!4 & sel) target a
> select clear
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/test-
> movement.png width 3000 height 3166 supersample 4 transparentBackground true
> color #2,4 #9fb59dff
> undo
> color #2,4 #ccffccff
> undo
> color #2,4 #ccffffff
> undo
> save /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/test-
> movement.cxs includeMaps true
——— End of log from Tue May 2 15:00:54 2023 ———
opened ChimeraX session
> close #5#1,3,6-8
> open
> /Users/srengac/Documents/Phenix/Sen1/RealSpaceRefine_150/Sen1-RNAaloneRSR147.updated_real_space_refined.pdb
Chain information for Sen1-RNAaloneRSR147.updated_real_space_refined.pdb #1
---
Chain | Description
O | No description available
P | No description available
> hide #!4 models
> cartoon style #1-2 modeHelix tube sides 20
> select #1
11494 atoms, 11627 bonds, 2 pseudobonds, 703 residues, 2 models selected
> select clear
> select #1/O:1536
17 atoms, 16 bonds, 1 residue, 1 model selected
> select up
454 atoms, 455 bonds, 27 residues, 1 model selected
> select up
11078 atoms, 11180 bonds, 690 residues, 1 model selected
> ui tool show "Color Actions"
> color sel #929292ff
> color sel #919191ff
> color sel #797979ff
> color sel #919191ff
> color sel #797979ff
> select clear
> open
> /Users/srengac/Documents/Phenix/Sen1/RealSpaceRefine_114/Sen1-RNA_ADPBeF3-RSR112-coot0.updated_real_space_refined.pdb
Chain information for
Sen1-RNA_ADPBeF3-RSR112-coot0.updated_real_space_refined.pdb #3
---
Chain | Description
O | No description available
P | No description available
> ui tool show Matchmaker
> matchmaker #!3 to #2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker Sen1-RNA_ADPBeF3-RSR68-coot-0.updated_real_space_refined.pdb, chain
O (#2) with Sen1-RNA_ADPBeF3-RSR112-coot0.updated_real_space_refined.pdb,
chain O (#3), sequence alignment score = 3581.6
RMSD between 694 pruned atom pairs is 0.195 angstroms; (across all 694 pairs:
0.195)
> hide #!2 models
> select #3/O:1533
24 atoms, 23 bonds, 1 residue, 1 model selected
> select up
526 atoms, 527 bonds, 31 residues, 1 model selected
> select up
11188 atoms, 11287 bonds, 697 residues, 1 model selected
> cartoon style sel modeHelix tube sides 20
> select clear
> select #3/O:1532
12 atoms, 11 bonds, 1 residue, 1 model selected
> select up
526 atoms, 527 bonds, 31 residues, 1 model selected
> select up
11188 atoms, 11287 bonds, 697 residues, 1 model selected
> select down
526 atoms, 527 bonds, 31 residues, 1 model selected
> select up
11188 atoms, 11287 bonds, 697 residues, 1 model selected
> color sel #797979ff
> color sel #fbec5dff
> select clear
> select #3/O:1532
12 atoms, 11 bonds, 1 residue, 1 model selected
> select #3
11477 atoms, 11597 bonds, 2 pseudobonds, 706 residues, 2 models selected
> ~select #3
Nothing selected
> select #2
5865 atoms, 5995 bonds, 2 pseudobonds, 710 residues, 2 models selected
> ~select #2
Nothing selected
> select #3
11477 atoms, 11597 bonds, 2 pseudobonds, 706 residues, 2 models selected
> select #1
11494 atoms, 11627 bonds, 2 pseudobonds, 703 residues, 2 models selected
> select H
11391 atoms, 1407 residues, 2 models selected
> delete atoms sel
> delete bonds sel
> select clear
> select #3/P:9
23 atoms, 25 bonds, 1 residue, 1 model selected
> select up
192 atoms, 213 bonds, 9 residues, 1 model selected
> color sel #919191ff
> select clear
> select #1/P:13
22 atoms, 24 bonds, 1 residue, 1 model selected
> select up
276 atoms, 307 bonds, 13 residues, 1 model selected
> color sel red
> select clear
> select #1/P:13
22 atoms, 24 bonds, 1 residue, 1 model selected
> select up
276 atoms, 307 bonds, 13 residues, 1 model selected
> nucleotides sel fill
> select clear
> dssp
> select clear
> select #3/O:1531
11 atoms, 10 bonds, 1 residue, 1 model selected
> select up
266 atoms, 267 bonds, 31 residues, 1 model selected
> select up
5589 atoms, 5688 bonds, 697 residues, 1 model selected
> color sel byhetero
> select clear
> select #3/O:1743
7 atoms, 6 bonds, 1 residue, 1 model selected
> select clear
> select #3/O:1365@NZ
1 atom, 1 residue, 1 model selected
> select up
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #3/O:1364@OG1
1 atom, 1 residue, 1 model selected
> select up
7 atoms, 6 bonds, 1 residue, 1 model selected
> select up
9 atoms, 7 bonds, 2 residues, 1 model selected
> select up
18 atoms, 16 bonds, 2 residues, 1 model selected
> select up
20 atoms, 17 bonds, 3 residues, 1 model selected
> select up
27 atoms, 25 bonds, 3 residues, 1 model selected
> select up
29 atoms, 26 bonds, 4 residues, 1 model selected
> select up
39 atoms, 37 bonds, 4 residues, 1 model selected
> select add #3/O:1787@CG
40 atoms, 37 bonds, 5 residues, 1 model selected
> select up
48 atoms, 45 bonds, 5 residues, 1 model selected
> select up
50 atoms, 46 bonds, 6 residues, 1 model selected
> select up
56 atoms, 52 bonds, 6 residues, 1 model selected
> select add #3/O:1334@NZ
57 atoms, 52 bonds, 7 residues, 1 model selected
> select up
65 atoms, 60 bonds, 7 residues, 1 model selected
> select up
67 atoms, 61 bonds, 8 residues, 1 model selected
> select up
76 atoms, 71 bonds, 8 residues, 1 model selected
> hide sel target a
> select clear
> select #3/O:1820@NE
1 atom, 1 residue, 1 model selected
> select up
11 atoms, 10 bonds, 1 residue, 1 model selected
> select up
26 atoms, 25 bonds, 3 residues, 1 model selected
> hide sel target a
> select clear
> save
> /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/Sen1-movement.cxs
——— End of log from Tue Jun 27 14:31:08 2023 ———
opened ChimeraX session
> select up
22 atoms, 24 bonds, 1 residue, 1 model selected
> select up
276 atoms, 307 bonds, 13 residues, 1 model selected
> color sel dark gray
> ui tool show "Color Actions"
> color sel #797979ff
> select clear
> select #3/P:9
23 atoms, 25 bonds, 1 residue, 1 model selected
> select up
192 atoms, 213 bonds, 9 residues, 1 model selected
> select up
5781 atoms, 5901 bonds, 706 residues, 1 model selected
> select down
192 atoms, 213 bonds, 9 residues, 1 model selected
> color sel red
> select clear
> save
> /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/Sen1-movement_overall.png
> width 3000 height 3279 supersample 4 transparentBackground true
> save
> /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/Sen1-movement.cxs
——— End of log from Tue Jun 27 18:29:08 2023 ———
opened ChimeraX session
> select up
20 atoms, 21 bonds, 1 residue, 1 model selected
> select up
192 atoms, 213 bonds, 9 residues, 1 model selected
> nucleotides sel fill
> select clear
> save
> /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/Sen1-movement_overall.png
> width 3000 height 3279 supersample 4 transparentBackground true
> save
> /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/Sen1-movement.cxs
——— End of log from Tue Jun 27 18:31:53 2023 ———
opened ChimeraX session
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
27 atoms, 29 bonds, 1 residue, 1 model selected
> style sel sphere
Changed 27 atom styles
> select clear
> save
> /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/RNAalone_Sen1-movement.cxs
——— End of log from Tue Jul 4 15:54:35 2023 ———
opened ChimeraX session
> select #1/O:1868
5 atoms, 4 bonds, 1 residue, 1 model selected
> select up
86 atoms, 86 bonds, 10 residues, 1 model selected
> select up
5523 atoms, 5625 bonds, 690 residues, 1 model selected
> select up
5799 atoms, 5932 bonds, 703 residues, 1 model selected
> color sel dark gray
> select clear
> save
> /Users/srengac/Documents/Phenix/Sen1/Figures/20Apr2023/RNAalone_Sen1-movement.cxs
——— End of log from Wed Jul 5 18:20:04 2023 ———
opened ChimeraX session
OpenGL version: 4.1 ATI-1.68.25
OpenGL renderer: AMD Radeon Pro 575 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac18,3
Processor Name: Intel Core i5
Processor Speed: 3.5 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Memory: 16 GB
Boot ROM Version: 428.0.0.0.0
SMC Version (system): 2.41f1
Software:
System Software Overview:
System Version: macOS 10.13.6 (17G14042)
Kernel Version: Darwin 17.7.0
Time since boot: 56 days 18:49
Graphics/Displays:
Radeon Pro 575:
Chipset Model: Radeon Pro 575
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Dynamic, Max): 4096 MB
Vendor: AMD (0x1002)
Device ID: 0x67df
Revision ID: 0x00c4
ROM Revision: 113-D000AA-931
VBIOS Version: 113-D0001A1P-025
EFI Driver Version: 01.00.931
Metal: Supported, feature set macOS GPUFamily1 v3
Displays:
iMac:
Display Type: Built-In Retina LCD
Resolution: 5120 x 2880 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
DELL U2412M:
Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
UI Looks like: 1920 x 1200
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 4RFMK5681QHL
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Connection Type: DisplayPort
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-XMAS: 1.1.2
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
et-xmlfile: 1.1.0
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openpyxl: 3.1.2
openvr: 1.16.801
packaging: 21.0
pandas: 2.0.1
ParmEd: 3.2.0
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
QtRangeSlider: 0.1.5
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
seaborn: 0.12.2
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
tzdata: 2023.3
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in event loop |
comment:2 by , 2 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
