Timeline



Dec 4, 2023:

5:07 PM Ticket #10283 (Crash while drag-selecting residues in sequence viewer) created by chimerax-bug-report@…
[…]
4:50 PM Ticket #8238 (User-installed bundles interfering with build) closed by Zach Pearson
fixed: Committed the fix today.
4:28 PM Dev2023-12-4 edited by Tom Goddard
(diff)
3:31 PM Ticket #10119 (atom_site.label_asym_id not allowing '.') closed by Greg Couch
fixed: Please reopen this ticket if you have any problems.
3:30 PM Ticket #9512 (Unable to open .cxs files saved in v1.6.1.) closed by Greg Couch
fixed: Please reopen if you have any problems.
2:18 PM Ticket #9525 (DICOM Segmentations: hard to resize cursor using touchpad Shift-scroll) closed by Zach Pearson
fixed
2:03 PM Ticket #9960 (ChargeError during dockprep) closed by pett
fixed: Fix: …
1:50 PM Dev2023-12-4 edited by Tom Goddard
(diff)
1:40 PM Ticket #10282 (Surface transparency not preserved when playing trajectory) created by goddard@…
[…]
1:29 PM Ticket #10114 (Unknown task state) closed by Zach Pearson
fixed: Added that state to the enum in core/src/tasks.
1:26 PM Ticket #10204 (Segmentations tool divide-by-zero when open DICOM only has SEG (no CT ...) closed by Zach Pearson
fixed: I've made the plane viewers do something sensible when there's no …
12:38 PM Ticket #10281 (Output colors in OBJ format using a .mtl file) created by zberndsen@…
From: "Berndsen, Zachary via ChimeraX-users" …
10:52 AM Ticket #10276 (MemoryError saving map in session) closed by Tom Goddard
nonchimerax
10:24 AM Ticket #10278 (MemoryError opening mmCIF files) closed by pett
duplicate
10:23 AM Ticket #10277 (SyntaxError in volume.py) closed by pett
duplicate: Hi Jayda, At the time you downloaded it, the release had a …
10:18 AM Ticket #10280 (UnicodeDecodeError reading PDB file) created by sk0815142@…
[…]

Dec 3, 2023:

12:06 PM Ticket #10279 (StarMap: embedded null character in Rosetta input) created by chimerax-bug-report@…
[…]
3:10 AM Ticket #10278 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]

Dec 1, 2023:

7:34 PM Ticket #10277 (SyntaxError in volume.py) created by jjhammock42@…
[…]
6:48 PM Ticket #9214 (ChimeraX 1.6.1 can not save as mmcif format while computedSheets is true) closed by pett
fixed: The sheet-computation code was doing all the right things when merging …
12:47 PM Ticket #10276 (MemoryError saving map in session) created by chimerax-bug-report@…
[…]
9:50 AM Ticket #10275 (Syntax error in volume.py) closed by pett
fixed: Hi Zahra, There was an error (typo) in the release candidate …
9:45 AM Ticket #10274 (Crash reading PDB file) closed by pett
can't reproduce
9:43 AM Ticket #10273 (Crash in garbage collection) closed by pett
can't reproduce
9:38 AM Ticket #10272 (Bad atom pointer?) closed by pett
can't reproduce: Version 1.5 -- maybe it will have "fixed itself" by now…
9:31 AM Ticket #10271 (mcopy command missing) closed by pett
not a bug: Hi Krishna, You must have found the mcopy documentation by searching …
9:22 AM Ticket #10269 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
9:12 AM Ticket #10275 (Syntax error in volume.py) created by zahra.mashhadi@…
[…]
4:46 AM Ticket #10274 (Crash reading PDB file) created by chimerax-bug-report@…
[…]
3:20 AM Ticket #10273 (Crash in garbage collection) created by chimerax-bug-report@…
[…]
2:59 AM Ticket #10272 (Bad atom pointer?) created by chimerax-bug-report@…
[…]
2:53 AM Ticket #10271 (mcopy command missing) created by kdr2001@…
[…]

Nov 30, 2023:

5:48 PM Ticket #10147 (Initial window placement offscreen) closed by pett
fixed: Committed a fix to the daily build (only): …
5:46 PM 2023-11-30 edited by Tom Goddard
(diff)
4:32 PM Ticket #10270 (need way to set full sequence of a chain) created by Greg Couch
It would be useful to be able to set the correct sequence to use for a …
3:39 PM Ticket #10268 (Movie recording not stopping) closed by Tom Goddard
duplicate: Duplicate of #10265.
2:58 PM Ticket #10269 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
2:56 PM Dev2023-11-27 edited by pett
(diff)
2:39 PM Ticket #10267 (SyntaxError in volume.py) closed by pett
duplicate
2:38 PM Ticket #10268 (Movie recording not stopping) created by rgong@…
[…] movie_2.mp4
2:37 PM Ticket #10267 (SyntaxError in volume.py) created by chimerax-bug-report@…
[…]
2:02 PM Ticket #9994 (ChimeraX hangs saving a session, macOS Sonoma) closed by Tom Goddard
nonchimerax: Seems it was a non-responsive file system causing the file browser not …
1:59 PM Ticket #10079 (Colors of exported GLTF models don't match ChimeraX colors) closed by Tom Goddard
fixed: Fixed. Wrote colors in linear color space and read as linear color …
1:56 PM Ticket #10198 (Need a volume viewer opened trigger) closed by Tom Goddard
fixed: Seems the chimerax.core.tools.ADD_TOOL_INSTANCE trigger does what you need.
1:52 PM Ticket #10250 (HtmlView temp file name: Invalid argument) closed by Tom Goddard
can't reproduce: Get Invalid argument in Python open() for the path on Windows. This …
1:38 PM Ticket #10265 (Movie record records too many frames) closed by Tom Goddard
not a bug: Are you putting your movie recording commands in a script (.cxc) file? …
1:28 PM Ticket #10266 (SyntaxError in volume.py) closed by Tom Goddard
duplicate: Duplicate.
1:18 PM Ticket #10264 (SyntaxError in volume.py) closed by Tom Goddard
duplicate: Fixed. A new release candidate build date November 30 will be on the …
1:18 PM Ticket #10263 (SyntaxError in volume.py) closed by Tom Goddard
duplicate: Duplicate of #10262.
1:17 PM Ticket #10262 (SyntaxError in volume.py) closed by Tom Goddard
duplicate: Fixed. A new release candidate build date November 30 will be on the …
1:16 PM Ticket #10259 (SyntaxError in volume.py) closed by Tom Goddard
duplicate: Fixed. A new release candidate build date November 30 will be on the …
1:15 PM Ticket #10258 (SyntaxError in volume.py) closed by Tom Goddard
fixed: Fixed and release candidate build restarted to minimize the reporting …
1:11 PM Ticket #10266 (SyntaxError in volume.py) created by chimerax-bug-report@…
[…]
12:51 PM Ticket #10265 (Movie record records too many frames) created by rgong@…
[…] movie_2.mp4
12:39 PM Ticket #10261 (SyntaxError in volume.py) closed by pett
duplicate
12:36 PM Ticket #10264 (SyntaxError in volume.py) created by d.veizaj@…
[…]
12:32 PM Ticket #10257 (Crash in event loop) closed by pett
limitation: Remote display
12:31 PM Ticket #10256 (Histogram widget: operands could not be broadcast together with shapes) closed by pett
duplicate
12:29 PM Ticket #10255 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by pett
limitation: Remote display
12:28 PM Ticket #10254 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by pett
limitation: Remote display
12:08 PM Ticket #10263 (SyntaxError in volume.py) created by eric.larquet@…
[…]
12:03 PM Ticket #10262 (SyntaxError in volume.py) created by eric.larquet@…
[…]
11:38 AM Ticket #10261 (SyntaxError in volume.py) created by chimerax-bug-report@…
[…]
11:03 AM Ticket #10260 (move command ignores "atoms" option when frames specified) closed by Tom Goddard
fixed: Fixed in daily build and 1.7. The code to pass to do the move at each …
11:00 AM Ticket #10260 (move command ignores "atoms" option when frames specified) created by Caroline.Stone@…
From: "Caroline Stone (JIC) via ChimeraX-users" …
10:44 AM Ticket #10259 (SyntaxError in volume.py) created by anthony.makwanda@…
[…]
8:58 AM Ticket #10258 (SyntaxError in volume.py) created by chimerax-bug-report@…
[…]
5:06 AM Ticket #10257 (Crash in event loop) created by chimerax-bug-report@…
[…]
4:57 AM Ticket #10256 (Histogram widget: operands could not be broadcast together with shapes) created by chimerax-bug-report@…
[…]
4:12 AM Ticket #10255 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
2:42 AM Ticket #10254 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]

Nov 29, 2023:

5:30 PM Ticket #8902 (Truncated HIS residue) closed by pett
fixed: Truncated histidines no longer cause Antechamber to run.
3:32 PM Ticket #10251 (Initial map colors identical) closed by Tom Goddard
fixed: Fixed in daily build and 1.7. The volume color sequence was being …
3:05 PM Ticket #10253 (No volume series slider shown when opening series of TIFF files) closed by Tom Goddard
not a bug: Slider is working. The problem in this report is that a series of 2D …
2:01 PM Ticket #10253 (No volume series slider shown when opening series of TIFF files) created by goddard@…
[…]
12:51 PM Ticket #10252 (Bug reports incorrectly show two backslashes on Log as 3 backslashes) closed by Tom Goddard
wontfix: I made a html2text github issue for this. But that repository was last …
12:31 PM Ticket #10252 (Bug reports incorrectly show two backslashes on Log as 3 backslashes) created by goddard@…
[…]
11:59 AM Ticket #10251 (Initial map colors identical) created by asarnow@…
[…]
11:50 AM Ticket #10250 (HtmlView temp file name: Invalid argument) created by chimerax-bug-report@…
[…]
10:16 AM Ticket #10249 (Crash in event loop) closed by pett
can't reproduce
9:10 AM Ticket #10248 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
9:09 AM Ticket #10247 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
9:07 AM Ticket #10245 (Restore new session in old ChimeraX) closed by pett
limitation
5:47 AM Ticket #10249 (Crash in event loop) created by chimerax-bug-report@…
[…]
3:16 AM Ticket #10248 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
2:24 AM Ticket #10247 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]

Nov 28, 2023:

7:57 PM Ticket #10239 (Crash in GL.glDeleteBuffers() while updating tomogram surfaces) closed by Tom Goddard
fixed: Fixed in daily build and 1.7. Removed unnecessary …
7:24 PM Ticket #10239 (Crash in GL.glDeleteBuffers() while updating tomogram surfaces) reopened by Tom Goddard
Hi Greg, Maybe you know or can find this Python esoterica -- can a …
6:29 PM Ticket #10236 (Cannot update file history) closed by Tom Goddard
can't reproduce: I don't see any explanation for this error. Not able to reproduce it. …
6:01 PM Ticket #10246 (Bug reports change C:\\Users shown in log into C:\\\Users in bug report) closed by Tom Goddard
wontfix: This is most likely a bug in converting the HTML log panel html to …
5:50 PM Ticket #10246 (Bug reports change C:\\Users shown in log into C:\\\Users in bug report) created by goddard@…
[…]
5:10 PM Ticket #10234 (AlphaFold predict: wrapped C/C++ object of type ChimeraXHtmlView has ...) closed by Tom Goddard
fixed: Fixed in daily build and 1.7. If user starts an AlphaFold prediction …
4:58 PM Ticket #10216 (Symbol in scipy library not found) closed by Tom Goddard
wontfix: Will investigate fixing if this is reported again. I don't see an …
4:31 PM Ticket #10245 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]
2:20 PM Ticket #10159 (RFE: have out-of-disk-space produce message instead of bug report) closed by pett
fixed: Now just puts up a dialog saying "Out of disk space" with no …
11:50 AM Ticket #10243 (Relative model-map position not preserved) closed by Tom Goddard
can't reproduce: I tried saving an atomic model relative to a map in several ways and …
11:40 AM 2023-11-30 created by Tom Goddard
11:39 AM Dev2023-12-4 created by Tom Goddard
11:38 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:28 AM Ticket #10244 ("Direct" modeling doesn't handle target deletion relative to template) created by pett
[…] alignment.ali
11:07 AM Ticket #10243 (Relative model-map position not preserved) created by helen.duyvesteyn@…
[…]
10:23 AM Ticket #10242 (Wrong version of regex installed) closed by Tom Goddard
limitation: We can't support installing Toolshed bundles such as SEQCROW using M1 …
10:06 AM Ticket #10240 (Crash reading matrix) closed by Tom Goddard
duplicate: Duplicate of #10239. This is probably an ArtiaX bug not deleting a …
9:43 AM Ticket #10239 (Crash in GL.glDeleteBuffers() while updating tomogram surfaces) closed by Tom Goddard
nonchimerax: Mac M1 graphics driver crash in ChimeraX code …
9:20 AM Ticket #10241 (Cannot read .chimerax) closed by pett
not a bug: Hi Ennio, Ironically, ChimeraX cannot read .chimerax files. That is …
9:08 AM Ticket #10238 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Duc, Thanks for reporting this problem. This is a bug in the Qt …
9:06 AM Ticket #10237 (Crash in event loop) closed by pett
can't reproduce: Toolshed check was running at the time
9:02 AM Ticket #10235 (Qt fatal error: Failed to initialize graphics backend for OpenGL) closed by pett
can't reproduce
8:57 AM Ticket #10232 (Crash in event loop) closed by pett
can't reproduce
5:17 AM Ticket #10242 (Wrong version of regex installed) created by andreapellegrini6698@…
[…]
4:24 AM Ticket #10241 (Cannot read .chimerax) created by ep204@…
[…]
3:58 AM Ticket #10240 (Crash reading matrix) created by chimerax-bug-report@…
[…]
3:54 AM Ticket #10239 (Crash in GL.glDeleteBuffers() while updating tomogram surfaces) created by chimerax-bug-report@…
[…]
3:26 AM Ticket #10238 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by minhducdkh@…
[…]
1:46 AM Ticket #10237 (Crash in event loop) created by chimerax-bug-report@…
[…]
12:24 AM Ticket #10236 (Cannot update file history) created by chimerax-bug-report@…
[…]

Nov 27, 2023:

10:22 PM Ticket #10235 (Qt fatal error: Failed to initialize graphics backend for OpenGL) created by chimerax-bug-report@…
[…]
9:01 PM Ticket #10234 (AlphaFold predict: wrapped C/C++ object of type ChimeraXHtmlView has ...) created by chimerax-bug-report@…
[…]
5:49 PM Ticket #10233 (Crash dumping Python thread info) created by zrizvi@…
[…]
4:24 PM Ticket #10232 (Crash in event loop) created by chimerax-bug-report@…
[…]
4:17 PM Dev2023-11-27 edited by Tom Goddard
(diff)
1:53 PM Ticket #10231 (surface zone with maxComponents option does not auto-update) closed by Tom Goddard
fixed: Fixed in daily and 1.7. Code that was handling maxComponents …
1:49 PM Ticket #10231 (surface zone with maxComponents option does not auto-update) created by goddard@…
[…]
11:26 AM Ticket #10230 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) closed by pett
duplicate: Hi Daniel, You reported this problem 2 years ago and at that time I …
11:17 AM Ticket #10230 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) created by Dbarrero@…
[…]
10:59 AM Ticket #10221 (open_command needs to handle UnicodeError) closed by pett
fixed
10:52 AM Ticket #10229 (Crash in event loop) closed by pett
can't reproduce
10:49 AM Ticket #10227 ('Tasks' object has no attribute 'remove') closed by pett
duplicate
10:42 AM Ticket #10225 (Restore new session in old ChimeraX) closed by pett
limitation
10:37 AM Ticket #10224 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:35 AM Ticket #10223 (Crash when asked to register) closed by pett
can't reproduce
10:29 AM Ticket #10222 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:22 AM Ticket #10220 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
10:21 AM Ticket #10219 (MemoryError opening mmCIF files) closed by pett
duplicate
10:15 AM Ticket #10217 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
9:48 AM Ticket #10214 (Unknown problem) closed by pett
can't reproduce: No actual problem/crash in the bug report.
9:45 AM Ticket #10213 (MemoryError opening mmCIF files) closed by pett
duplicate
12:09 AM Ticket #10229 (Crash in event loop) created by chimerax-bug-report@…
[…]

Nov 26, 2023:

8:34 PM Ticket #10228 (Can't download isolde from chimeraX) created by 12133050@…
[…]
5:10 AM Ticket #10227 ('Tasks' object has no attribute 'remove') created by chimerax-bug-report@…
[…]

Nov 25, 2023:

12:59 PM Ticket #10226 (Clipper: ArrayMemoryError updating surface) created by chimerax-bug-report@…
[…]

Nov 24, 2023:

8:52 PM Ticket #10225 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]
2:47 PM Ticket #10224 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
2:38 PM Ticket #10223 (Crash when asked to register) created by chimerax-bug-report@…
[…]
5:21 AM Ticket #10222 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
4:23 AM Ticket #10221 (open_command needs to handle UnicodeError) created by chimerax-bug-report@…
[…]
2:12 AM Ticket #10220 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
12:56 AM Ticket #10219 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]

Nov 23, 2023:

6:07 PM Ticket #10218 (ffmpeg failure) created by david.chalmers@…
[…]
10:15 AM Ticket #10217 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
5:31 AM Ticket #10216 (Symbol in scipy library not found) created by chimerax-bug-report@…
[…]
5:18 AM Ticket #10215 (Crash in garbage collection while fetching mmCIF) created by haaris.safdari@…
[…]

Nov 22, 2023:

9:57 PM Ticket #10214 (Unknown problem) created by chimerax-bug-report@…
[…]
12:58 PM Ticket #10207 (Crash when coordinate values in PDB file are not numbers) closed by pett
can't reproduce: User first opens a PDB file with NaNs in it, which ChimeraX rejects. …
12:36 PM Ticket #10213 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
11:48 AM Ticket #10205 (glClear: invalid framebuffer operation) closed by Tom Goddard
can't reproduce: OpenGL error drawing side view. glClear() invalid framebuffer …
11:45 AM Ticket #10212 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Mark, Thanks for reporting this problem. This is a bug in the Qt …
11:43 AM Ticket #10211 (Crash opening PDB file) closed by pett
can't reproduce
11:17 AM Ticket #10212 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by maf95@…
[…]
11:00 AM Ticket #10211 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
10:38 AM Ticket #10210 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Xavi, Thanks for reporting this problem. This is a bug in the Qt …
10:05 AM Ticket #10209 (MemoryError opening mmCIF files) closed by pett
duplicate: Hi Cristina, Thanks for reporting this problem. It is fixed in the …
9:15 AM Ticket #10208 (KeyError matching selected regions) closed by pett
duplicate: Hi Francesco, Thanks for reporting this problem. It is fixed in the …
7:29 AM Ticket #10210 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by x.aran-guiu@…
[…]
2:51 AM Ticket #10209 (MemoryError opening mmCIF files) created by cristina.moniobaca@…
[…]

Nov 21, 2023:

11:22 PM Ticket #10208 (KeyError matching selected regions) created by francesco.musiani@…
[…]
6:12 PM Ticket #10207 (Crash when coordinate values in PDB file are not numbers) created by chimerax-bug-report@…
[…]
5:40 PM Ticket #10206 (Crop mouse mode in VR with tilted slab moves wrong slab face) closed by Tom Goddard
fixed: Fixed in daily build and 1.7 release candidates dated Nov 22, 2023. …
5:25 PM Ticket #10206 (Crop mouse mode in VR with tilted slab moves wrong slab face) created by phil.cruz@…
[…]
2:43 PM Ticket #10205 (glClear: invalid framebuffer operation) created by chimerax-bug-report@…
[…]
1:33 PM Ticket #10204 (Segmentations tool divide-by-zero when open DICOM only has SEG (no CT ...) created by Elaine Meng
[…]
11:20 AM Ticket #10202 (Session restore: invalid load key) closed by pett
duplicate: Version 1.1
11:17 AM Ticket #10200 (Histogram widget: operands could not be broadcast together with shapes) closed by pett
duplicate: Hi Nikhil, Thanks for reporting this problem. It is fixed in the 1.7 …
11:16 AM Dev2023-11-27 created by Tom Goddard
11:15 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:04 AM Ticket #10203 (Unknown crash) created by chencarina21@…
[…]
9:55 AM Ticket #10202 (Session restore: invalid load key) created by chimerax-bug-report@…
[…]
9:47 AM Ticket #10201 (Add a VR shortcut to the toolbar) created by Zach Pearson
Steffen Thomas requested this on the mailing list. Hello I'm …
9:41 AM Ticket #10199 (Crash in event loop) closed by pett
can't reproduce
9:39 AM Ticket #10197 (Crash in QMainWindow::removeDockWidget) closed by pett
can't reproduce

Nov 20, 2023:

6:19 PM Ticket #10200 (Histogram widget: operands could not be broadcast together with shapes) created by nikhil.bharambe@…
[…]
5:57 PM Ticket #10199 (Crash in event loop) created by chimerax-bug-report@…
[…]
4:01 PM Ticket #10198 (Need a volume viewer opened trigger) created by Zach Pearson
It would be helpful if there was a trigger that fired when the volume …
3:33 PM Dev2023-11-20 edited by Tom Goddard
(diff)
3:32 PM Dev2023-11-20 edited by Tom Goddard
(diff)
2:11 PM Ticket #10197 (Crash in QMainWindow::removeDockWidget) created by chimerax-bug-report@…
[…]
12:43 PM Ticket #10196 (Segmentations saved in sessions don't get added to seg tool menu) created by Zach Pearson
12:43 PM Ticket #10174 (Session restore DICOM error) closed by Zach Pearson
fixed: Should be fixed tomorrow. I added guards around all the modes so that …
11:51 AM Ticket #10184 (MemoryError opening mmCIF files) closed by pett
fixed: Hi Ralph, Great to hear that the release candidate worked for you! …
11:46 AM Ticket #10187 (angle command on 3 centroids claims 3 were not specified) closed by pett
fixed: Fixed on both branches: …
11:39 AM Ticket #9849 (DICOM: Segmentations list not cleared when all models closed) closed by Zach Pearson
fixed: Now when you close a segmentation in the model panel it should also …
11:13 AM Ticket #9617 ("pip install" failure) closed by Zach Pearson
fixed: Works in today's build. Greg rewrote that file a little while ago, the …
11:09 AM Ticket #9967 (3D segmentation cursor doesn't always spawn near the 3D model) closed by Zach Pearson
fixed
11:07 AM Ticket #10195 (Crash in Qt event loop in _cursor_position possibly adjusting volume ...) closed by Tom Goddard
can't reproduce: Likely Qt bug in old ChimeraX 1.3.
11:02 AM Ticket #10195 (Crash in Qt event loop in _cursor_position possibly adjusting volume ...) created by chimerax-bug-report@…
[…]
10:56 AM Ticket #10192 (Hysteresis with clip cap transparency) closed by Tom Goddard
not a bug: The flat surface cap where you clip a surface can be made transparent …
10:42 AM Ticket #10190 (Session restore: MemoryError restoring map) closed by Tom Goddard
limitation: Ran out of memory opening a ChimeraX session. Memory allocation of …
10:39 AM Ticket #10189 (Graphics crash, macOS 14.1.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
10:38 AM Ticket #10188 (Graphics crash, macOS 14.1.1, Intel Iris Plus Graphics 655) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
10:34 AM Ticket #10194 (Session restore: Execution of 'PseudobondManager' object's 'group_map' ...) closed by pett
can't reproduce: Would be 1000x easier to debug in current versions of ChimeraX.
10:23 AM Ticket #10191 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
7:18 AM Ticket #10194 (Session restore: Execution of 'PseudobondManager' object's 'group_map' ...) created by chimerax-bug-report@…
[…]
7:05 AM Ticket #10193 (XMAS session restore: 'NoneType' object has no attribute ...) created by chimerax-bug-report@…
[…]
5:51 AM Ticket #10192 (Hysteresis with clip cap transparency) created by micaela.boierosanders@…
[…]

Nov 19, 2023:

7:44 PM Ticket #10191 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
5:48 AM Ticket #10190 (Session restore: MemoryError restoring map) created by chimerax-bug-report@…
[…]
1:54 AM Ticket #10189 (Graphics crash, macOS 14.1.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]

Nov 18, 2023:

12:54 PM Ticket #10188 (Graphics crash, macOS 14.1.1, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]

Nov 17, 2023:

4:54 PM Ticket #10152 (Sesson restore: wrapped C/C++ object of type DICOMTable has been deleted) closed by Zach Pearson
fixed: Should be fixed in tomorrow's daily build and the 1.7 release.
4:48 PM Ticket #10171 (DICOM: Segmentations tool not happy if more than one medical image is ...) closed by Zach Pearson
fixed
3:48 PM Ticket #10180 ("devel build" not using/finding bundle_info.xml) closed by Zach Pearson
not a bug
11:29 AM Ticket #10186 (Allow angle command to specify 4 atoms defining two vectors) closed by Tom Goddard
fixed: Done. Made angle command accept 3 or 4 atoms or centroids (although …
11:16 AM Ticket #10187 (angle command on 3 centroids claims 3 were not specified) created by goddard@…
[…]
10:42 AM Ticket #10186 (Allow angle command to specify 4 atoms defining two vectors) created by a.rohou@…
[…]
9:12 AM Ticket #10185 (MemoryError opening mmCIF files) closed by pett
duplicate: Follow up to #10184
8:58 AM Ticket #10181 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
7:42 AM Ticket #10185 (MemoryError opening mmCIF files) created by r.loring@…
[…]
7:38 AM Ticket #10184 (MemoryError opening mmCIF files) created by r.loring@…
[…]
5:21 AM Ticket #10183 (transparency command) created by cjh188@…
[…]
2:52 AM Ticket #10182 (ISOLDE: There is no registered Platform called "OpenCL") created by sean.connell@…
[…]
2:44 AM Ticket #10181 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]

Nov 16, 2023:

2:24 PM Ticket #10179 (ISOLDE: RuntimeError: Release Object) closed by pett
duplicate: Duplicate of #10177
2:23 PM Ticket #10178 (ISOLDE: RuntimeError: Release Object) closed by pett
duplicate: Duplicate of #10177
2:20 PM Ticket #10177 (ISOLDE: RuntimeError: Release Object) closed by pett
can't reproduce: Similarly old versions
2:18 PM Ticket #10180 ("devel build" not using/finding bundle_info.xml) created by kkssy141@…
[…]
2:17 PM Ticket #10179 (ISOLDE: RuntimeError: Release Object) created by chimerax-bug-report@…
[…]
2:17 PM Ticket #10176 (ISOLDE: wrapped C/C++ object of type QComboBox has been deleted) closed by pett
can't reproduce: Very old ChimeraX and ISOLDE
2:15 PM Ticket #10178 (ISOLDE: RuntimeError: Release Object) created by chimerax-bug-report@…
[…]
2:08 PM Ticket #10177 (ISOLDE: RuntimeError: Release Object) created by chimerax-bug-report@…
[…]
2:05 PM Ticket #10168 (Error when no output models from Modeller) closed by pett
fixed: Fix: …
2:01 PM Ticket #10176 (ISOLDE: wrapped C/C++ object of type QComboBox has been deleted) created by chimerax-bug-report@…
[…]
12:52 PM Ticket #10172 (Crash showing Rapid Access at startup) closed by pett
can't reproduce: Hi Dewight, I would recommend upgrading to the 1.6.1 release or the …
12:47 PM Ticket #10169 (Crash in event loop during a Qt mouse down event) closed by pett
can't reproduce
12:18 PM 2023-11-16 edited by Tom Goddard
(diff)
10:59 AM Ticket #10175 (Toggling rapid access stops plane viewer redrawing) created by Zach Pearson
10:39 AM Ticket #10174 (Session restore DICOM error) created by phil.cruz@…
[…]
10:29 AM Ticket #10173 (Toolshed upload slow) created by Tristan Croll
[…]
10:23 AM Ticket #10172 (Crash showing Rapid Access at startup) created by dewight.wiiliams@…
[…]
10:14 AM Ticket #10166 (Graphics crash, macOS 13.6.1, Intel Iris Plus Graphics 655) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver.
9:47 AM Ticket #10167 (So many errors) closed by pett
can't reproduce
9:44 AM Ticket #10165 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
9:42 AM Ticket #10164 (Windows blank) closed by pett
nonchimerax: Hi Delong, You need to install an Nvidia driver for your graphics …
9:35 AM Ticket #10163 (MemoryError opening mmCIF) closed by pett
duplicate
9:32 AM Ticket #10171 (DICOM: Segmentations tool not happy if more than one medical image is ...) created by Elaine Meng
[…]
8:55 AM Ticket #10170 (Read ORCA: could not broadcast input array) created by andreapellegrini6698@…
[…]
8:27 AM Ticket #10169 (Crash in event loop during a Qt mouse down event) created by chimerax-bug-report@…
[…]
8:04 AM Ticket #10168 (Error when no output models from Modeller) created by chimerax-bug-report@…
[…]
7:31 AM Ticket #10167 (So many errors) created by chimerax-bug-report@…
[…]
6:26 AM Ticket #10166 (Graphics crash, macOS 13.6.1, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]
3:39 AM Ticket #10112 (Crash in background load of OpenMM forcefields) closed by Tristan Croll
fixed: Unless there's something deeper going on (who knows... I've never been …
2:46 AM Ticket #10130 ('AdaptiveDistanceRestraintMgr' object has no attribute '_c_pointer') closed by Tristan Croll
fixed: For ISOLDE 1.7, if the manager for a given set of restraints is closed …

Nov 15, 2023:

11:07 PM Ticket #10165 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
6:53 PM Ticket #10164 (Windows blank) created by delong.sun@…
[…] chimerax.bmp
6:37 PM Ticket #10163 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]
6:01 PM ChangeLog edited by Elaine Meng
(diff)
5:57 PM Ticket #9920 (Turning off plane guidelines shouldn't reset the viewers to the ...) closed by Zach Pearson
fixed: They no longer do. I'm not sure what fixed this, but in the course of …
4:22 PM Ticket #9904 (Starting a segmentation in 3d then switching to orthoplanes causes ...) closed by Zach Pearson
fixed: I think this is fixed, though I'm not quite sure which of today's …
2:39 PM Ticket #10162 (Axial and coronal pucks not aligned with middle slice) closed by Zach Pearson
fixed
1:29 PM Ticket #10153 (Segger: library not loaded: libsz.2.dylib) closed by Tom Goddard
fixed: Fixed in daily build and 1.7 release candidate. I added the missing …
11:47 AM Ticket #10162 (Axial and coronal pucks not aligned with middle slice) created by Zach Pearson
When the segmentation tool first opens the axial and coronal …
11:33 AM Ticket #10161 (Detect multichannel DICOMs and group them together) created by Zach Pearson
11:31 AM Ticket #9965 (Segmentations opened from files give traceback on edit) closed by Zach Pearson
fixed: I restored the code that tracked the relationships between series. …
11:07 AM Ticket #10159 (RFE: have out-of-disk-space produce message instead of bug report) reopened by pett
9:54 AM Ticket #10160 (Segmentations: UnboundLocalError) closed by Zach Pearson
fixed: Hi Phil, I just fixed this yesterday and it should work in today's …
9:47 AM Ticket #10159 (RFE: have out-of-disk-space produce message instead of bug report) closed by pett
nonchimerax: Maybe we could put something in the top-level error handling that if …
9:43 AM Ticket #10158 (sqm failure) closed by pett
limitation
9:41 AM Ticket #10157 (Crash in event loop in QDockWidget::event()) closed by pett
can't reproduce
9:35 AM Ticket #10155 (Crash in event loop: The X11 connection broke: I/O error (code 1)) closed by pett
can't reproduce: Seems to be the same machine as #10154
9:34 AM Ticket #10154 (Crash using color chooser) closed by pett
can't reproduce: Is this an Intel Mac running Linux?!?
8:29 AM Ticket #10160 (Segmentations: UnboundLocalError) created by phil.cruz@…
[…]
8:13 AM Ticket #10159 (RFE: have out-of-disk-space produce message instead of bug report) created by chimerax-bug-report@…
[…]
8:01 AM Ticket #10158 (sqm failure) created by chimerax-bug-report@…
[…]
5:36 AM Ticket #10157 (Crash in event loop in QDockWidget::event()) created by chimerax-bug-report@…
[…]
3:33 AM Ticket #10156 (Various DCD errors) created by chimerax-bug-report@…
[…]
12:06 AM Ticket #10155 (Crash in event loop: The X11 connection broke: I/O error (code 1)) created by chimerax-bug-report@…
[…]

Nov 14, 2023:

10:10 PM Ticket #10154 (Crash using color chooser) created by chimerax-bug-report@…
[…]
5:29 PM Ticket #10076 (VRML output for 3D color printers) closed by Tom Goddard
fixed: If it is still desired to allow gltf output to use all vertex colors, …
2:08 PM ChangeLog edited by Elaine Meng
(diff)
2:02 PM Ticket #10153 (Segger: library not loaded: libsz.2.dylib) created by rposert@…
[…]
11:33 AM Dev2023-11-20 created by Tom Goddard
11:31 AM 2023-11-16 created by Tom Goddard
11:29 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:00 AM Ticket #10151 (MemoryError opening mmCIF files) closed by pett
duplicate
8:59 AM Ticket #10150 (Crash in garbage collection while rebuilding nucleotides data) closed by pett
can't reproduce
8:51 AM Ticket #10148 (Crash in event loop) closed by pett
can't reproduce
8:42 AM Ticket #10146 (Crash in event loop) closed by pett
can't reproduce
7:54 AM Ticket #10152 (Sesson restore: wrapped C/C++ object of type DICOMTable has been deleted) created by chimerax-bug-report@…
[…]
6:40 AM Ticket #10151 (MemoryError opening mmCIF files) created by chimerax-bug-report@…
[…]
4:29 AM Ticket #10150 (Crash in garbage collection while rebuilding nucleotides data) created by chimerax-bug-report@…
[…]
4:14 AM Ticket #10149 (ArtiaX: float division by zero) created by chimerax-bug-report@…
[…]
1:03 AM Ticket #10148 (Crash in event loop) created by chimerax-bug-report@…
[…]

Nov 13, 2023:

11:50 PM Ticket #10147 (Initial window placement offscreen) created by Tristan Croll
[…]
9:57 PM Ticket #10146 (Crash in event loop) created by chimerax-bug-report@…
[…]
6:26 PM Ticket #10126 (Phenix location) closed by pett
fixed: Some code to better handle Windows installations didn't make it into …
5:28 PM Ticket #8096 (Antechamber on M2: Bad CPU type in executable) closed by Tom Goddard
duplicate: Duplicate of #8893. Eric added a warning advising to install Rosetta …
5:26 PM Ticket #10132 (ffmpeg: "Bad CPU type in executable" recording spin movie) closed by Tom Goddard
fixed: Fixed. I added Mac ARM ffmpeg version 6.0 to the daily build and 1.7 …
4:23 PM Dev2023-11-13 edited by Tom Goddard
(diff)
4:17 PM Dev2023-11-13 edited by Tom Goddard
(diff)
3:40 PM Dev2023-11-13 edited by Tom Goddard
(diff)
3:12 PM Dev2023-11-13 edited by Tom Goddard
(diff)
2:39 PM Ticket #10145 (Crash showing Rapid Access at startup) created by hgbrown@…
[…]
12:58 PM WikiStart edited by Tom Goddard
(diff)
12:55 PM Dev2023-11-13 edited by Tom Goddard
(diff)
12:53 PM Ticket #10131 (Ribbon going through RNA adduct instead of base) closed by Tom Goddard
fixed: Fixed in daily build and 1.7 release candidate. The ribbon code just …
11:29 AM Ticket #10143 (Crash in chain_trace_atoms after a 'combine') closed by pett
can't reproduce
11:24 AM Ticket #10142 (No known/registered numeric attribute seq_conservation) closed by pett
not a bug: Hi Rocislaw, Looking at the log output you provided, it looks like …
11:09 AM Ticket #10141 (Restore new session in old ChimeraX) closed by pett
limitation: Hi Zibo, Although you can restore old sessions in newer versions of …
10:42 AM Ticket #10140 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
10:27 AM Ticket #10139 (number of electrons + formal charge is odd) closed by pett
limitation: Hi Buse, Thanks for reporting this problem. This error message …
10:14 AM Ticket #10144 (Crash in event loop) created by antonio.florencio@…
[…]
9:53 AM Ticket #10137 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Esther, Thanks for reporting this problem. This is a bug …
9:47 AM Ticket #10136 (MemoryError opening mmCIF) closed by pett
duplicate
9:37 AM Ticket #10143 (Crash in chain_trace_atoms after a 'combine') created by chimerax-bug-report@…
[…]
9:36 AM Ticket #10134 (MemoryError opening mmCIF) closed by pett
duplicate
9:35 AM Ticket #10133 (Act on open model from command line) closed by pett
not a bug: Hi Matt, For most commands, simply omitting the atom/model specifier …
5:08 AM Ticket #10142 (No known/registered numeric attribute seq_conservation) created by rkrutyholowa@…
[…]
2:15 AM Ticket #10141 (Restore new session in old ChimeraX) created by lzbluckystar@…
[…] 7li MHOR5 13 11 2023.cxs
1:52 AM Ticket #10140 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]

Nov 12, 2023:

7:45 AM Ticket #10139 (number of electrons + formal charge is odd) created by bandacyedek@…
[…]
6:24 AM Ticket #10138 (Crash showing Rapid Access at startup) created by moimaian@…
[…]

Nov 11, 2023:

11:01 AM Ticket #10137 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by bullitt@…
[…]
3:27 AM Ticket #10136 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]

Nov 10, 2023:

11:02 PM Ticket #10135 (Crash saving mmCIF) created by chimerax-bug-report@…
[…]
9:13 PM Ticket #10134 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]
11:20 AM Ticket #10133 (Act on open model from command line) created by matt.jaremko@…
[…]
9:57 AM Ticket #10132 (ffmpeg: "Bad CPU type in executable" recording spin movie) created by whale6@…
[…]
8:58 AM Ticket #10126 (Phenix location) reopened by Zach Pearson
I think this is a real bug. I was trying to help someone run this on …
2:24 AM Ticket #10131 (Ribbon going through RNA adduct instead of base) created by Tristan Croll
[…]
1:58 AM Ticket #10130 ('AdaptiveDistanceRestraintMgr' object has no attribute '_c_pointer') created by claudia.kielkopf@…
[…]

Nov 9, 2023:

6:35 PM Ticket #10129 (Make windowing mouse mode update histogram brightness curve in realtime) closed by Tom Goddard
fixed: Done. ChimeraX daily build or release candidate dated Nov 10, 2023 …
6:26 PM Ticket #10129 (Make windowing mouse mode update histogram brightness curve in realtime) created by phil.cruz@…
When using the windowing hand controller mode in VR it would be useful …
5:45 PM Ticket #9608 (Registration mailing-list subscription: HTTP 404 failure) reopened by pett
Just tried this again in the daily build and got: Failed to …
5:00 PM Ticket #10128 (Blocky artifacts in images) closed by Tom Goddard
nonchimerax: That looks like a graphics driver problem. It would be useful if you …
4:53 PM Ticket #10125 (volume initialColors/saveSettings don't mix) closed by Tom Goddard
fixed: Fixed in Nov 10, 2023 daily build and release candidate. Thanks for …
4:48 PM Ticket #10122 (CheckWaterViewer holding reference to dead Residue) closed by pett
fixed: Fixed in develop and release candidate
4:46 PM Ticket #10128 (Blocky artifacts in images) created by gmartin@…
[…] [[Image(...)]]
3:34 PM Ticket #9626 (Crash opening mmCIF file) closed by Greg Couch
can't reproduce: Need input file to reproduce
3:30 PM Ticket #10126 (Phenix location) closed by pett
not a bug: Hi Scott, Thanks for reporting this problem. I will try to improve …
3:17 PM Ticket #10127 (DICOM session does not restore thresholds or colors) created by phil.cruz@…
[…]
3:08 PM Dev2023-11-13 created by Tom Goddard
3:07 PM DeveloperMeetings edited by Tom Goddard
(diff)
3:07 PM 2023-11-9 edited by Tom Goddard
(diff)
2:57 PM Ticket #10126 (Phenix location) created by swlovell@…
[…]
2:08 PM NIAID2023 edited by Elaine Meng
(diff)
2:01 PM NIAID2023 edited by Elaine Meng
(diff)
1:52 PM NIAID2023 edited by Elaine Meng
(diff)
1:48 PM NIAID2023 edited by Elaine Meng
(diff)
1:34 PM NIAID2023 edited by Elaine Meng
(diff)
11:02 AM Ticket #10125 (volume initialColors/saveSettings don't mix) created by rposert@…
[…]
10:33 AM Ticket #10120 (Crash setting volume level) closed by Tom Goddard
can't reproduce: Probable graphics driver crash.
10:31 AM Ticket #10124 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:09 AM Ticket #10121 (Crash in event loop) closed by pett
can't reproduce
9:05 AM Ticket #10124 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
8:19 AM Ticket #10123 (Problem reading XYZ file: invalid literal for int() with base 10) created by giuso@…
[…]
5:41 AM Ticket #10122 (CheckWaterViewer holding reference to dead Residue) created by chimerax-bug-report@…
[…]
5:10 AM Ticket #10121 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:57 AM Ticket #10120 (Crash setting volume level) created by chimerax-bug-report@…
[…]
12:40 AM Ticket #9544 (Phenix mmCIF secondary structure problems) closed by Greg Couch
not a bug: ChimeraX is showing the structure as described in the file. The file …
12:18 AM Ticket #9608 (Registration mailing-list subscription: HTTP 404 failure) closed by Greg Couch
fixed: Instead of updating for mailman3, added redirects to the web server …

Nov 8, 2023:

11:56 PM Ticket #9410 (mmCIF writing vs. blank chain IDs) closed by Greg Couch
fixed: The label_asym value in a mmCIF file is an ASCII-ish identifier. In …
6:25 PM Ticket #9910 (Missing chain objects) closed by Greg Couch
fixed: The mmCIF writer uses the chain's description field to fill in …
5:06 PM Ticket #1770 (Add command to create pseudobonds.) closed by pett
fixed: Added a pseudobond/pbond command. Now in the Elaine …
1:55 PM NIAID2023 edited by Elaine Meng
(diff)
1:53 PM NIAID2023 edited by Elaine Meng
(diff)
12:49 PM Ticket #10119 (atom_site.label_asym_id not allowing '.') created by psauer@…
[…]
12:38 PM Ticket #10118 (Add user agent to ColabFold run sequence search) closed by Tom Goddard
fixed: Done. Added user agent "ChimeraX chimerax-programmers@…".
12:38 PM Ticket #10118 (Add user agent to ColabFold run sequence search) created by Tom Goddard
ColabFold is complaining that it wants a user agent set in the request …
11:46 AM Ticket #10117 (Hello ChimeraX) closed by pett
fixed: Hi Lijun, We have been having problems with our server. The download …
11:45 AM Ticket #10116 (Cannot Download) closed by pett
fixed
11:21 AM Ticket #10117 (Hello ChimeraX) created by liulj@…
[…]
11:16 AM Ticket #10116 (Cannot Download) created by wdcutts@…
[…] [[Image(...)]] [[Image(...)]] …
11:04 AM Ticket #10115 (Update AlphaFold prediction to fix error "SVD did not converge") closed by Tom Goddard
fixed: Fixed. I updated ColabFold to the November 1, 2023 github source …
10:57 AM Ticket #10115 (Update AlphaFold prediction to fix error "SVD did not converge") created by dmargulies@…
Begin forwarded message: From: "Margulies, David (NIH/NIAID) Subject: …
10:55 AM Ticket #10114 (Unknown task state) created by pett
When our server is partially hosed and jobs queue up, the handling of …
9:18 AM Ticket #10113 (ISOLDE holding ref to deleted structure) closed by pett
duplicate
12:18 AM Ticket #10113 (ISOLDE holding ref to deleted structure) created by chimerax-bug-report@…
[…]

Nov 7, 2023:

4:29 PM Ticket #4536 (consistent model color scheme) closed by pett
fixed: Basically just changed uses of Model.model_color to …
3:33 PM Ticket #10112 (Crash in background load of OpenMM forcefields) created by chimerax-bug-report@…
[…]
1:06 PM Ticket #10110 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
1:03 PM Ticket #10111 (ArtiaX session save: Unknown class name 'MarkerSetPlus') created by long.chen@…
[…] [[Image(...)]] …
11:57 AM Ticket #10110 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
10:41 AM Ticket #10106 (MemoryError saving session) closed by Tom Goddard
can't reproduce: If I see this reported a few more times I will investigate whether it …
10:23 AM Ticket #10109 (Crash in pdb_connect::find_missing_structure_bonds) closed by pett
can't reproduce: 1.5, so may already be fixed. Doesn't reproduce with the standard …
10:18 AM Ticket #10103 (Crash setting clip parameters) closed by Tom Goddard
duplicate: Duplicate of #10102. Mesa graphics crash.
10:17 AM Ticket #10102 (Crash showing scale bar) closed by Tom Goddard
can't reproduce: Crashed in swap_buffers(). Probable Mesa graphics driver crash.
10:16 AM Ticket #10107 (Restore new session in old ChimeraX) closed by pett
limitation: Hi Mark, Though session files written by older versions of ChimeraX …
9:42 AM Ticket #10105 (Color key: cannot restore numeric locale) closed by pett
fixed
9:10 AM Ticket #10104 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.2.5
9:06 AM Ticket #10101 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.2.5
8:35 AM ChangeLog edited by pett
(diff)
6:56 AM Ticket #10109 (Crash in pdb_connect::find_missing_structure_bonds) created by chimerax-bug-report@…
[…]
6:17 AM Ticket #10108 (Make GLTF output so that importing into Blender sets the center of ...) created by u34216@…
[…]
4:11 AM Ticket #10107 (Restore new session in old ChimeraX) created by maf95@…
[…]
2:14 AM Ticket #10106 (MemoryError saving session) created by chimerax-bug-report@…
[…]
2:02 AM Ticket #10105 (Color key: cannot restore numeric locale) created by chimerax-bug-report@…
[…]

Nov 6, 2023:

10:15 PM Ticket #10104 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
9:09 PM Ticket #10103 (Crash setting clip parameters) created by chimerax-bug-report@…
[…]
9:03 PM Ticket #10102 (Crash showing scale bar) created by chimerax-bug-report@…
[…]
6:53 PM Ticket #10101 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
5:17 PM Ticket #10087 (Crash closing volume viewer window) closed by pett
can't reproduce: Hi Gillian, If it happens again, try the ChimeraX daily build (or the …
5:08 PM ChangeLog edited by Elaine Meng
(diff)
4:57 PM Ticket #10100 (Open forEachFile fails if file names contain spaces) closed by Tom Goddard
fixed: Fixed. The option opened the file by running the user command open …
4:54 PM Ticket #10100 (Open forEachFile fails if file names contain spaces) created by goddard@…
[…]
4:40 PM Ticket #10099 (Unable to restore objects of NewerVersionQuery class) closed by pett
duplicate: Duplicate of #9924
4:34 PM Ticket #10098 (DockPrep not catching ChargeError) closed by pett
duplicate: Duplicate of #9960
4:04 PM Ticket #10097 (Crash loading toolshed) closed by pett
can't reproduce
3:44 PM Ticket #10099 (Unable to restore objects of NewerVersionQuery class) created by chimerax-bug-report@…
[…]
3:33 PM Dev2023-11-6 edited by Tom Goddard
(diff)
3:11 PM Dev2023-11-6 edited by Tom Goddard
(diff)
3:01 PM Ticket #8798 (ChimeraX hangs at startup checking for updates) closed by Greg Couch
fixed: Fixed. ChimeraX was hanging checking for newer versions. Which it …
2:46 PM Ticket #10090 (QKeyEvent in drag/drop code) closed by Tom Goddard
duplicate: This appears to be a Qt bug. It has been reported twice before #9712
2:41 PM Ticket #10091 (Crash swapping buffers after 'clip' command) closed by Tom Goddard
can't reproduce: Probably Mesa graphics crash.
2:36 PM Ticket #10094 (Cannot download AlphaFold model) closed by Tom Goddard
fixed: Fixed. Since jaxlib depends on CUDA and the CUDA version gets updated …
1:13 PM Ticket #10095 (Restore new session in old ChimeraX) closed by pett
limitation
1:11 PM Ticket #10093 (Crash in event loop) closed by pett
can't reproduce
1:10 PM Ticket #10092 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
1:07 PM Ticket #10098 (DockPrep not catching ChargeError) created by chimerax-bug-report@…
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1:07 PM 2023-11-9 created by Tom Goddard
1:06 PM 2023-11-2 created by Tom Goddard
1:02 PM DeveloperMeetings edited by Tom Goddard
(diff)
1:01 PM Dev2023-11-6 created by Tom Goddard
1:00 PM Dev2023-10-30 edited by Tom Goddard
(diff)
12:58 PM DeveloperMeetings edited by Tom Goddard
(diff)
12:57 PM Ticket #10089 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
can't reproduce: 1.3
12:43 PM Ticket #10096 (Allow setting initial volume colors) closed by Tom Goddard
fixed: Done. I added the initialColors option to the volume command and the …
12:40 PM Ticket #10097 (Crash loading toolshed) created by chimerax-bug-report@…
[…]
12:39 PM Ticket #10096 (Allow setting initial volume colors) created by jhooker@…
From: James Hooker via ChimeraX-users <chimerax-users@…> …
11:49 AM Ticket #10088 (color by conservation problem) closed by pett
duplicate: Asked and answered on the chimerax-users list.
8:27 AM Ticket #10095 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
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8:03 AM Ticket #10094 (Cannot download AlphaFold model) created by jagadish.mangu@…
[…]
4:19 AM Ticket #10093 (Crash in event loop) created by chimerax-bug-report@…
[…]
2:51 AM Ticket #10092 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
2:15 AM Ticket #10091 (Crash swapping buffers after 'clip' command) created by chimerax-bug-report@…
[…]
1:30 AM Ticket #10090 (QKeyEvent in drag/drop code) created by chimerax-bug-report@…
[…]

Nov 5, 2023:

2:58 PM Ticket #10089 (Crash using File→Open dialog on Windows and/or returning from function) created by chimerax-bug-report@…
[…]
8:12 AM Ticket #10088 (color by conservation problem) created by elzbieta.wator@…
[…] [[Image(...)]]
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