The following bug report has been submitted:
Platform: macOS-13.4.1-arm64-arm-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x00000002f3007000 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 316 in wait
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 574 in wait
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 1297 in run
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x00000001f589de00 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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"procRole" : "Foreground",
"version" : 2,
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"captureTime" : "2023-11-16 17:26:59.6852 +0100",
"incident" : "DAE7F168-1AE7-4750-AE3D-EFE77E88D774",
"pid" : 36602,
"translated" : false,
"cpuType" : "ARM-64",
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"bug_type" : "309",
"procLaunch" : "2023-11-16 13:34:11.9272 +0100",
"procStartAbsTime" : 602674208859,
"procExitAbsTime" : 937899726528,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
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"crashReporterKey" : "52F1F95F-83C3-7A68-A3BA-7955566C93F7",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 0,
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"exception" : {"codes":"0x0000000000000001, 0x0000000000000008","rawCodes":[1,8],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000008"},
"ktriageinfo" : "VM - (arg = 0x0) pmap_enter retried due to resource shortage\n",
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"size" : 582996,
"uuid" : "2237410f-d39c-30ce-9a94-13aacb66b766",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6888239104,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5087232,
"uuid" : "203e4401-8c2e-3157-a24b-92f52551d43e",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "1977"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 6886064128,
"size" : 294912,
"uuid" : "c2fd3094-b465-39a4-b774-16583ff53c4b",
"path" : "\/usr\/lib\/system\/libdispatch.dylib",
"name" : "libdispatch.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7011311616,
"CFBundleShortVersionString" : "1.11",
"CFBundleIdentifier" : "com.apple.QuartzCore",
"size" : 3661824,
"uuid" : "cf853bbd-01b6-3f46-ada1-ec70fd2dc9dc",
"path" : "\/System\/Library\/Frameworks\/QuartzCore.framework\/Versions\/A\/QuartzCore",
"name" : "QuartzCore",
"CFBundleVersion" : "1045.16"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
}
],
"sharedCache" : {
"base" : 6883655680,
"size" : 3551657984,
"uuid" : "f5b60d87-3ee7-3c74-8415-517f8103a187"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=2.8G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.8G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG backing stores 4288K 8 \nCG image 2640K 67 \nColorSync 592K 30 \nCoreAnimation 10.7M 326 \nCoreGraphics 96K 6 \nCoreImage 80K 5 \nCoreUI image data 5728K 61 \nFoundation 32K 2 \nKernel Alloc Once 32K 1 \nMALLOC 1.3G 335 \nMALLOC guard page 192K 11 \nMALLOC_MEDIUM (reserved) 608.0M 8 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 128K 5 \nOpenGL GLSL 384K 4 \nSTACK GUARD 608K 38 \nStack 200.8M 39 \nStack Guard 56.0M 1 \nVM_ALLOCATE 281.0M 395 \nVM_ALLOCATE (reserved) 160.0M 3 reserved VM address space (unallocated)\n__AUTH 1851K 374 \n__AUTH_CONST 28.9M 612 \n__CTF 824 1 \n__DATA 20.2M 751 \n__DATA_CONST 39.0M 760 \n__DATA_DIRTY 1983K 233 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 830.8M 147 \n__OBJC_RO 66.3M 1 \n__OBJC_RW 2011K 1 \n__TEXT 854.1M 780 \ndyld private memory 272K 2 \nmapped file 270.3M 82 \nshared memory 3536K 39 \n=========== ======= ======= \nTOTAL 5.0G 5135 \nTOTAL, minus reserved VM space 4.0G 5135 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "dc5a59c6c64f611afa38e281fe8f578f1b0d5ca8",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "61675b89201f677a9a4cbd65",
"factorPackIds" : {
"HEALTH_FEATURE_AVAILABILITY" : "65287aa4be905e686a05f0a2"
},
"deploymentId" : 240000074
},
{
"rolloutId" : "64c17a9925d75a7281053d4c",
"factorPackIds" : {
"SIRI_AUDIO_DISABLE_MEDIA_ENTITY_SYNC" : "64d29746ad29a465b3bbeace"
},
"deploymentId" : 240000001
}
],
"experiments" : [
]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Volumes/processing/ATPsynthase/relion_05022023/Refine3D/job380/run_it016_half1_class001.mrc
Opened run_it016_half1_class001.mrc as #1, grid size 210,210,210, pixel 2.55,
shown at level 0.158, step 1, values float32
> volume #1 level 0.3259
> open /Volumes/processing/ATPsynthase/warp_25012023/M/bin1.5/job380/mask.mrc
Opened mask.mrc as #2, grid size 210,210,210, pixel 2.55, shown at level 1,
step 1, values float32
> volume #2 level 0.9982
> volume #2 style mesh
> close #1
> close #2
> open /Volumes/processing/ATPsynthase/warp_25012023/M/bin1.5/job380/mask.mrc
Opened mask.mrc as #1, grid size 210,210,210, pixel 2.55, shown at level 1,
step 1, values float32
> open
> /Volumes/processing/ATPsynthase/warp_25012023/M/bin1.5/job380/run_ct16_half1_class001_unfil.mrc
Opened run_ct16_half1_class001_unfil.mrc as #2, grid size 210,210,210, pixel
2.55, shown at level 0.382, step 1, values float32
> open
> /Volumes/processing/ATPsynthase/warp_25012023/M/bin1.5/job380/run_ct16_half2_class001_unfil.mrc
Opened run_ct16_half2_class001_unfil.mrc as #3, grid size 210,210,210, pixel
2.55, shown at level 0.382, step 1, values float32
> volume #3 level 0.514
> volume #2 level 0.5129
> open
> /Volumes/processing/ATPsynthase/relion_05022023/Refine3D/job380/run_ct16_half1_class001_unfil.mrc
Opened run_ct16_half1_class001_unfil.mrc as #4, grid size 210,210,210, pixel
2.55, shown at level 0.382, step 1, values float32
> open
> /Volumes/processing/ATPsynthase/relion_05022023/Refine3D/job380/run_ct16_half2_class001_unfil.mrc
Opened run_ct16_half2_class001_unfil.mrc as #5, grid size 210,210,210, pixel
2.55, shown at level 0.382, step 1, values float32
> volume #4 level 0.4905
> volume #5 level 0.5423
> volume #4 level 0.5352
> volume #5 level 0.5046
> volume #1 level 1
> volume #5 level 0.7777
> volume #1 level 0.7038
> open /Users/ledietri/Processing/starfile_convert.py
Traceback (most recent call last):
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/scripting.py", line 83, in open_python_script
code = compile(data, stream.name, 'exec')
File "/Users/ledietri/Processing/starfile_convert.py", line 33
match current_software:
^
SyntaxError: invalid syntax
Failed opening file /Users/ledietri/Processing/starfile_convert.py:
Error opening python file /Users/ledietri/Processing/starfile_convert.py
> close #1
> close #2
> close #3
> close #4
> close #5
> open
> /Volumes/processing/ATPsynthase/coot/model_peripheral_stalk_real_space_refined_002-coot-16.pdb
Chain information for
model_peripheral_stalk_real_space_refined_002-coot-16.pdb #1
---
Chain | Description
0 | No description available
1 | No description available
3 | No description available
5 | No description available
6 | No description available
8 | No description available
9 | No description available
M | No description available
> open /Volumes/processing/ATPsynthase/coot/ResolveCryoEM_9/denmod_map.ccp4
Opened denmod_map.ccp4 as #2, grid size 210,210,210, pixel 2.55, shown at
level 0.0117, step 1, values float32
> volume #2 level 0.09276
> volume #2 level 0.04941
> hide atoms
> show cartoons
> ui mousemode right zoom
> volume #2 level 0.04752
> volume #2 style mesh
> ui tool show "Side View"
> select /0:2-82
607 atoms, 628 bonds, 81 residues, 1 model selected
> ui tool show "Model Panel"
> lighting soft
> ui tool show "Color Key"
> ui mousemode right "color key"
> ui mousemode right zoom
> hide #3 models
> ui tool show "Basic Actions"
> select /0
607 atoms, 628 bonds, 81 residues, 1 model selected
> color /0 #000000 target c
> set bgColor white
> color /0 #212121 target c
> color /1 #212121 target c
> color /5 #212121 target c
> color /0 #a7a7a8 target c
> color /0 #005555 target c
> color /1 #005555 target c
> color /3 #005555 target c
> view orient
> view
> color /3 #ef7c00 target c
> ui mousemode right select
> select clear
> color /M #00b1ea target c
> color /9 #005555 target c
> color /8 #005555 target c
> color /6 #005555 target c
> color /5 #005555 target c
Drag select of 2 denmod_map.ccp4
> select #2
2 models selected
> select clear
> color /0 #006c66 target c
Drag select of 141 residues, 2 denmod_map.ccp4
> select clear
> ui mousemode right zoom
> volume #2 color #6b6865
> graphics mesh
Expected a keyword
> volume #1 subdivideSurface true subdivisionLevels 2
No volumes specified
> volume #2 subdivideSurface true subdivisionLevels 2
> volume #2 level 0.09276
> ui tool show "Side View"
> surface dust #2 size 25.5
> undo
> surface dust #2 size 25.5
> volume #2 level 0.05129
> volume #2 color #9e9d9b
> volume #2 color #004f9f
> volume #2 color #296260
> volume #2 color #7ea4a4
> volume #2 color #b3d7d5
> volume #2 color #959dab
> volume #2 color #9e9d9b
> set bgColor black
> volume #2 color #ebebeb
> volume #2 color #d6d6d6
> set bgColor white
> volume #2 color #bfbfbf
> volume #2 color grey
> volume #2 color #9f9f9f
> rock
> stop
> rock
> stop
> view orient
> view
> select /0
607 atoms, 628 bonds, 81 residues, 1 model selected
> volume #2 color #004f9f
> volume #2 color #ebebeb
> volume #2 color #004f9f
> volume #2 color #ebebeb
> color /0 #004f9f target c
> select /1
4661 atoms, 4750 bonds, 595 residues, 1 model selected
> color /1 #c6d325 target c
> select /3
1907 atoms, 1944 bonds, 251 residues, 1 model selected
> select /3
1907 atoms, 1944 bonds, 251 residues, 1 model selected
> select /5
986 atoms, 1011 bonds, 123 residues, 1 model selected
> select /0
607 atoms, 628 bonds, 81 residues, 1 model selected
> select /6
926 atoms, 946 bonds, 124 residues, 1 model selected
> color /6 #b3d7d5 target c
> ui mousemode right select
> select clear
> select /6
926 atoms, 946 bonds, 124 residues, 1 model selected
> select /8
692 atoms, 715 bonds, 88 residues, 1 model selected
> color /8 #006c66 target c
> select /9
776 atoms, 802 bonds, 97 residues, 1 model selected
> select /8
692 atoms, 715 bonds, 88 residues, 1 model selected
> select /9
776 atoms, 802 bonds, 97 residues, 1 model selected
> color /9 #796ba8 target c
> select clear
> select /M
1736 atoms, 1787 bonds, 230 residues, 1 model selected
> select clear
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M2
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: Mac14,2
Model Number: Z15S001DND/A
Chip: Apple M2
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 8422.121.1
OS Loader Version: 8422.121.1
Software:
System Software Overview:
System Version: macOS 13.4.1 (c) (22F770820d)
Kernel Version: Darwin 22.5.0
Time since boot: 22 hours, 46 minutes
Graphics/Displays:
Apple M2:
Chipset Model: Apple M2
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina Display
Resolution: 2560 x 1664 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL P2418D:
Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
UI Looks like: 2560 x 1440 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
