Opened 2 years ago

Closed 2 years ago

#10143 closed defect (can't reproduce)

Crash in chain_trace_atoms after a 'combine'

Reported by: chimerax-bug-report@… Owned by: Eric Pettersen
Priority: normal Milestone:
Component: Structure Editing Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Linux-5.4.0-166-generic-x86_64-with-glibc2.31
ChimeraX Version: 1.5 (2022-11-24 00:03:27 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Current thread 0x00007f15403a1740 (most recent call first):
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/atomic/molobject.py", line 1597 in chain_trace_atoms
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/atomic/structure.py", line 469 in _update_chain_trace_graphics
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/atomic/structure.py", line 375 in _update_graphics
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/atomic/structure.py", line 359 in update_graphics_if_needed
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/atomic/structure.py", line 1778 in _update_graphics_if_needed
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 134 in invoke
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 217 in _activate
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 186 in activate
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 354 in activate_trigger
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/graphics/view.py", line 283 in check_for_drawing_change
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 65 in draw_new_frame
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/gui.py", line 283 in event_loop
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/__main__.py", line 884 in init
  File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1035 in 
  File "/usr/lib/ucsf-chimerax/lib/python3.9/runpy.py", line 87 in _run_code
  File "/usr/lib/ucsf-chimerax/lib/python3.9/runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/media/roberto/DataDisk3/Helical
> reconstructions/TMV/MapwithModel4UDV.cxs"

Opened run_class001.mrc as #4, grid size 300,300,300, pixel 1.13, shown at
level 0.00454, step 1, values float32  
Opened EMD-2842.map as #1, grid size 210,210,190, pixel 1.06,1.06,1.06, shown
at level 1.47, step 1, values float32  
Opened postprocess_masked.mrc as #3, grid size 300,300,300, pixel 1.13, shown
at level 0.0148, step 1, values float32  
Opened 4udv map 4.5 as #5, grid size 59,50,44, pixel 1.5, shown at level
0.0903, step 1, values float32  
opened ChimeraX session  

> open "/media/roberto/DataDisk3/Helical reconstructions/TMV/4udv.pdb1"

4udv.pdb1 title:  
Cryo-em structure of TMV At 3.35 A resolution [more info...]  
  
Chain information for 4udv.pdb1  
---  
Chain | Description  
6.1/A | No description available  
6.2/A 6.3/A 6.4/A 6.5/A 6.6/A 6.7/A 6.8/A 6.9/A 6.10/A 6.11/A 6.12/A 6.13/A
6.14/A 6.15/A 6.16/A 6.17/A 6.18/A 6.19/A 6.20/A 6.21/A 6.22/A 6.23/A 6.24/A
6.25/A 6.26/A 6.27/A 6.28/A 6.29/A 6.30/A 6.31/A 6.32/A 6.33/A 6.34/A 6.35/A
6.36/A 6.37/A 6.38/A 6.39/A 6.40/A 6.41/A 6.42/A 6.43/A 6.44/A 6.45/A 6.46/A
6.47/A 6.48/A 6.49/A | No description available  
6.1/R 6.2/R 6.3/R 6.4/R 6.5/R 6.6/R 6.7/R 6.8/R 6.9/R 6.10/R 6.11/R 6.12/R
6.13/R 6.14/R 6.15/R 6.16/R 6.17/R 6.18/R 6.19/R 6.20/R 6.21/R 6.22/R 6.23/R
6.24/R 6.25/R 6.26/R 6.27/R 6.28/R 6.29/R 6.30/R 6.31/R 6.32/R 6.33/R 6.34/R
6.35/R 6.36/R 6.37/R 6.38/R 6.39/R 6.40/R 6.41/R 6.42/R 6.43/R 6.44/R 6.45/R
6.46/R 6.47/R 6.48/R 6.49/R | No description available  
  

> combine #6 #7

Remapping chain ID 'A' in 4udv.pdb1 #6.2 to 'B'  
Remapping chain ID 'R' in 4udv.pdb1 #6.2 to 'S'  
Remapping chain ID 'A' in 4udv.pdb1 #6.3 to 'C'  
Remapping chain ID 'R' in 4udv.pdb1 #6.3 to 'T'  
Remapping chain ID 'A' in 4udv.pdb1 #6.4 to 'D'  
Remapping chain ID 'R' in 4udv.pdb1 #6.4 to 'U'  
Remapping chain ID 'A' in 4udv.pdb1 #6.5 to 'E'  
Remapping chain ID 'R' in 4udv.pdb1 #6.5 to 'V'  
Remapping chain ID 'A' in 4udv.pdb1 #6.6 to 'F'  
Remapping chain ID 'R' in 4udv.pdb1 #6.6 to 'W'  
Remapping chain ID 'A' in 4udv.pdb1 #6.7 to 'G'  
Remapping chain ID 'R' in 4udv.pdb1 #6.7 to 'X'  
Remapping chain ID 'A' in 4udv.pdb1 #6.8 to 'H'  
Remapping chain ID 'R' in 4udv.pdb1 #6.8 to 'Y'  
Remapping chain ID 'A' in 4udv.pdb1 #6.9 to 'I'  
Remapping chain ID 'R' in 4udv.pdb1 #6.9 to 'Z'  
Remapping chain ID 'A' in 4udv.pdb1 #6.10 to 'J'  
Remapping chain ID 'R' in 4udv.pdb1 #6.10 to 'a'  
Remapping chain ID 'A' in 4udv.pdb1 #6.11 to 'K'  
Remapping chain ID 'R' in 4udv.pdb1 #6.11 to 'b'  
Remapping chain ID 'A' in 4udv.pdb1 #6.12 to 'L'  
Remapping chain ID 'R' in 4udv.pdb1 #6.12 to 'c'  
Remapping chain ID 'A' in 4udv.pdb1 #6.13 to 'M'  
Remapping chain ID 'R' in 4udv.pdb1 #6.13 to 'd'  
Remapping chain ID 'A' in 4udv.pdb1 #6.14 to 'N'  
Remapping chain ID 'R' in 4udv.pdb1 #6.14 to 'e'  
Remapping chain ID 'A' in 4udv.pdb1 #6.15 to 'O'  
Remapping chain ID 'R' in 4udv.pdb1 #6.15 to 'f'  
Remapping chain ID 'A' in 4udv.pdb1 #6.16 to 'P'  
Remapping chain ID 'R' in 4udv.pdb1 #6.16 to 'g'  
Remapping chain ID 'A' in 4udv.pdb1 #6.17 to 'Q'  
Remapping chain ID 'R' in 4udv.pdb1 #6.17 to 'h'  
Remapping chain ID 'A' in 4udv.pdb1 #6.18 to 'i'  
Remapping chain ID 'R' in 4udv.pdb1 #6.18 to 'j'  
Remapping chain ID 'A' in 4udv.pdb1 #6.19 to 'k'  
Remapping chain ID 'R' in 4udv.pdb1 #6.19 to 'l'  
Remapping chain ID 'A' in 4udv.pdb1 #6.20 to 'm'  
Remapping chain ID 'R' in 4udv.pdb1 #6.20 to 'n'  
Remapping chain ID 'A' in 4udv.pdb1 #6.21 to 'o'  
Remapping chain ID 'R' in 4udv.pdb1 #6.21 to 'p'  
Remapping chain ID 'A' in 4udv.pdb1 #6.22 to 'q'  
Remapping chain ID 'R' in 4udv.pdb1 #6.22 to 'r'  
Remapping chain ID 'A' in 4udv.pdb1 #6.23 to 's'  
Remapping chain ID 'R' in 4udv.pdb1 #6.23 to 't'  
Remapping chain ID 'A' in 4udv.pdb1 #6.24 to 'u'  
Remapping chain ID 'R' in 4udv.pdb1 #6.24 to 'v'  
Remapping chain ID 'A' in 4udv.pdb1 #6.25 to 'w'  
Remapping chain ID 'R' in 4udv.pdb1 #6.25 to 'x'  
Remapping chain ID 'A' in 4udv.pdb1 #6.26 to 'y'  
Remapping chain ID 'R' in 4udv.pdb1 #6.26 to 'z'  
Remapping chain ID 'A' in 4udv.pdb1 #6.27 to '1'  
Remapping chain ID 'R' in 4udv.pdb1 #6.27 to '2'  
Remapping chain ID 'A' in 4udv.pdb1 #6.28 to '3'  
Remapping chain ID 'R' in 4udv.pdb1 #6.28 to '4'  
Remapping chain ID 'A' in 4udv.pdb1 #6.29 to '5'  
Remapping chain ID 'R' in 4udv.pdb1 #6.29 to '6'  
Remapping chain ID 'A' in 4udv.pdb1 #6.30 to '7'  
Remapping chain ID 'R' in 4udv.pdb1 #6.30 to '8'  
Remapping chain ID 'A' in 4udv.pdb1 #6.31 to '9'  
Remapping chain ID 'R' in 4udv.pdb1 #6.31 to '0'  
Remapping chain ID 'A' in 4udv.pdb1 #6.32 to 'AA'  
Remapping chain ID 'R' in 4udv.pdb1 #6.32 to 'AB'  
Remapping chain ID 'A' in 4udv.pdb1 #6.33 to 'AC'  
Remapping chain ID 'R' in 4udv.pdb1 #6.33 to 'AD'  
Remapping chain ID 'A' in 4udv.pdb1 #6.34 to 'AE'  
Remapping chain ID 'R' in 4udv.pdb1 #6.34 to 'AF'  
Remapping chain ID 'A' in 4udv.pdb1 #6.35 to 'AG'  
Remapping chain ID 'R' in 4udv.pdb1 #6.35 to 'AH'  
Remapping chain ID 'A' in 4udv.pdb1 #6.36 to 'AI'  
Remapping chain ID 'R' in 4udv.pdb1 #6.36 to 'AJ'  
Remapping chain ID 'A' in 4udv.pdb1 #6.37 to 'AK'  
Remapping chain ID 'R' in 4udv.pdb1 #6.37 to 'AL'  
Remapping chain ID 'A' in 4udv.pdb1 #6.38 to 'AM'  
Remapping chain ID 'R' in 4udv.pdb1 #6.38 to 'AN'  
Remapping chain ID 'A' in 4udv.pdb1 #6.39 to 'AO'  
Remapping chain ID 'R' in 4udv.pdb1 #6.39 to 'AP'  
Remapping chain ID 'A' in 4udv.pdb1 #6.40 to 'AQ'  
Remapping chain ID 'R' in 4udv.pdb1 #6.40 to 'AR'  
Remapping chain ID 'A' in 4udv.pdb1 #6.41 to 'AS'  
Remapping chain ID 'R' in 4udv.pdb1 #6.41 to 'AT'  
Remapping chain ID 'A' in 4udv.pdb1 #6.42 to 'AU'  
Remapping chain ID 'R' in 4udv.pdb1 #6.42 to 'AV'  
Remapping chain ID 'A' in 4udv.pdb1 #6.43 to 'AW'  
Remapping chain ID 'R' in 4udv.pdb1 #6.43 to 'AX'  
Remapping chain ID 'A' in 4udv.pdb1 #6.44 to 'AY'  
Remapping chain ID 'R' in 4udv.pdb1 #6.44 to 'AZ'  
Remapping chain ID 'A' in 4udv.pdb1 #6.45 to 'Aa'  
Remapping chain ID 'R' in 4udv.pdb1 #6.45 to 'Ab'  
Remapping chain ID 'A' in 4udv.pdb1 #6.46 to 'Ac'  
Remapping chain ID 'R' in 4udv.pdb1 #6.46 to 'Ad'  
Remapping chain ID 'A' in 4udv.pdb1 #6.47 to 'Ae'  
Remapping chain ID 'R' in 4udv.pdb1 #6.47 to 'Af'  
Remapping chain ID 'A' in 4udv.pdb1 #6.48 to 'Ag'  
Remapping chain ID 'R' in 4udv.pdb1 #6.48 to 'Ah'  
Remapping chain ID 'A' in 4udv.pdb1 #6.49 to 'Ai'  
Remapping chain ID 'R' in 4udv.pdb1 #6.49 to 'Aj'  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.5 (2022-11-24)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 525.147.05
OpenGL renderer: NVIDIA GeForce RTX 2080 Ti/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=unity
XDG_SESSION_DESKTOP=unity
XDG_CURRENT_DESKTOP=Unity:Unity7:ubuntu
DISPLAY=:0
Manufacturer: System manufacturer
Model: System Product Name
OS: Ubuntu 20.04 Focal Fossa
Architecture: 64bit ELF
Virtual Machine: none
CPU: 28 Intel(R) Core(TM) i9-7940X CPU @ 3.10GHz
Cache Size: 19712 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:          125Gi       2.3Gi       107Gi        95Mi        15Gi       121Gi
	Swap:          18Gi          0B        18Gi

Graphics:
	1a:00.0 VGA compatible controller [0300]: NVIDIA Corporation TU102 [GeForce RTX 2080 Ti Rev. A] [10de:1e07] (rev a1)	
	Subsystem: ASUSTeK Computer Inc. TU102 [GeForce RTX 2080 Ti Rev. A] [1043:866a]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    asttokens: 2.1.0
    Babel: 2.11.0
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2022.9.24
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2.1
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.5
    ChimeraX-AtomicLibrary: 8.0.3
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.3
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.4
    decorator: 5.1.1
    distro: 1.7.0
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.2.0
    filelock: 3.7.1
    fonttools: 4.38.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.1.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 5.1.0
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.4
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    platformdirs: 2.5.4
    prompt-toolkit: 3.0.33
    psutil: 5.9.1
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.6
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.3.0
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    urllib3: 1.26.13
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.11.0

Change History (2)

comment:1 by Eric Pettersen, 2 years ago

Component: UnassignedStructure Editing
Owner: set to Eric Pettersen
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionCrash in chain_trace_atoms after a 'combine'

comment:2 by Eric Pettersen, 2 years ago

Resolution: can't reproduce
Status: acceptedclosed
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