Opened 2 years ago

Closed 2 years ago

#10088 closed defect (duplicate)

color by conservation problem

Reported by: elzbieta.wator@… Owned by: pett
Priority: normal Milestone:
Component: Sequence Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

Hi,
I am trying to color my protein structure by conservation. I prepared alignement file i fasta format and when I upload it to the ChimeraX and use command: color byattribute seq_conservation palette cyanmaroon not the whole structure of my proteins get coloured. Namely despite no mismatch in the PDB file and sequence which is first in aln file there are several residues which stays in the previously selected colour. I've already made sure that the sequence is correct and I have no further ideas how to solve this problems.
I will be very grateful for your tips.

Best,

Ela Wator
 [cid:e1499547-d8cf-48a6-89cb-b2ea6e696097]

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Attachments (1)

image.png​ (165.9 KB ) - added by elzbieta.wator@… 2 years ago.
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Change History (3)

by elzbieta.wator@…, 2 years ago

Attachment: image.png​ added

Added by email2trac

comment:1 by pett, 2 years ago

Component: Unassigned → Sequence
Owner: set to pett
Platform: → all
Project: → ChimeraX
Status: new → accepted

comment:2 by pett, 2 years ago

Resolution: → duplicate
Status: accepted → closed

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