![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Last modified 2 years ago
#10203 feedback defect
Unknown crash
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [40172]
Path: /Applications/ChimeraX-1.6.1.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.6.1 (1.6.1.0)
Code Type: X86-64 (Translated)
Parent Process: ??? [1]
Responsible: ChimeraX [40172]
User ID: 501
Date/Time: 2023-11-21 11:03:49.082 -0800
OS Version: macOS 11.4 (20F71)
Report Version: 12
Anonymous UUID: 0FB2C93A-1B81-DE2E-6994-8C2454AA8E47
Sleep/Wake UUID: 26F3221B-9620-4DB4-8953-531908E37672
Time Awake Since Boot: 330000 seconds
Time Since Wake: 5500 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000ce1b2a01d2c8 -> 0x00004e1b2a01d2c8 (possible pointer authentication failure)
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x4e1b2a01d2c8:
GPU Carveout (reserved) 1000000000-7000000000 [384.0G] ---/--- SM=NUL reserved VM address space (unallocated)
-->
MALLOC_NANO 600000000000-600008000000 [128.0M] rw-/rwx SM=SHM
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2031392e __pthread_kill + 10
2 libsystem_c.dylib 0x00007fff20226be5 raise + 26
3 libsystem_platform.dylib 0x00007fff20387d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 com.apple.framework.IOKit 0x00007fff22a2094e io_connect_method + 827
6 ??? 0x0000000000000018 0 + 24
Thread 1:: com.apple.rosetta.exceptionserver
0 runtime 0x00007ffdffc8b858 0x7ffdffc8a000 + 6232
1 runtime 0x00007ffdffc95d50 0x7ffdffc8a000 + 48464
2 runtime 0x00007ffdffc96a20 0x7ffdffc8a000 + 51744
Thread 2:: ThreadPoolServiceThread
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10
2 QtWebEngineCore 0x000000013063b26f 0x12c166000 + 72176239
3 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483
4 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098
5 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792
6 QtWebEngineCore 0x00000001305e8aad 0x12c166000 + 71838381
7 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194
8 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 3:: Chrome_IOThread
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10
2 QtWebEngineCore 0x000000013063b26f 0x12c166000 + 72176239
3 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483
4 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098
5 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792
6 QtWebEngineCore 0x000000012de1f572 0x12c166000 + 30119282
7 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194
8 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 4:: NetworkConfigWatcher
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x000000013063471f 0x12c166000 + 72148767
4 QtWebEngineCore 0x000000013055fe69 0x12c166000 + 71278185
5 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483
6 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098
7 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792
8 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194
9 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
10 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 5:: Chrome_InProcGpuThread
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x000000013055fe08 0x12c166000 + 71278088
4 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483
5 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098
6 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792
7 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194
8 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 6:: Chrome_ChildIOThread
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10
2 QtWebEngineCore 0x000000013063b26f 0x12c166000 + 72176239
3 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483
4 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098
5 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792
6 QtWebEngineCore 0x0000000133261882 0x12c166000 + 118470786
7 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194
8 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
9 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 7:: CompositorTileWorker1
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 QtWebEngineCore 0x000000013062ce22 0x12c166000 + 72117794
3 QtWebEngineCore 0x000000013286f505 0x12c166000 + 108041477
4 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
5 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 8:: ThreadPoolSingleThreadSharedForeground0
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095
4 QtWebEngineCore 0x00000001305f6057 0x12c166000 + 71893079
5 QtWebEngineCore 0x00000001305f5bbd 0x12c166000 + 71891901
6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 9:: VizCompositorThread
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x000000013063471f 0x12c166000 + 72148767
4 QtWebEngineCore 0x000000013055fe69 0x12c166000 + 71278185
5 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483
6 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098
7 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792
8 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194
9 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
10 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 10:: NetworkConfigWatcher
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x000000013063471f 0x12c166000 + 72148767
4 QtWebEngineCore 0x000000013055fe69 0x12c166000 + 71278185
5 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483
6 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098
7 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792
8 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194
9 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
10 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 11:: NetworkService
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10
2 QtWebEngineCore 0x000000013063b26f 0x12c166000 + 72176239
3 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483
4 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098
5 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792
6 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194
7 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
8 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 12:: NetworkConfigWatcher
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x000000013063471f 0x12c166000 + 72148767
4 QtWebEngineCore 0x000000013055fe69 0x12c166000 + 71278185
5 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483
6 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098
7 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792
8 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194
9 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
10 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 13:: ThreadPoolSingleThreadForegroundBlocking1
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095
4 QtWebEngineCore 0x00000001305f6057 0x12c166000 + 71893079
5 QtWebEngineCore 0x00000001305f5bed 0x12c166000 + 71891949
6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 14:: NetworkConfigWatcher
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x000000013063471f 0x12c166000 + 72148767
4 QtWebEngineCore 0x000000013055fe69 0x12c166000 + 71278185
5 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483
6 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098
7 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792
8 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194
9 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
10 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 15:: com.apple.NSEventThread
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 com.apple.CoreFoundation 0x00007fff2043b8c5 __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff20439f7b __CFRunLoopRun + 1332
4 com.apple.CoreFoundation 0x00007fff20439380 CFRunLoopRunSpecific + 567
5 com.apple.AppKit 0x00007fff22cea68a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 16:: ThreadPoolBackgroundWorker
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095
4 QtWebEngineCore 0x00000001305f6057 0x12c166000 + 71893079
5 QtWebEngineCore 0x00000001305f5afd 0x12c166000 + 71891709
6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 17:: MemoryInfra
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x000000013063471f 0x12c166000 + 72148767
4 QtWebEngineCore 0x000000013055fe69 0x12c166000 + 71278185
5 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483
6 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098
7 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792
8 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194
9 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
10 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 18:: ThreadPoolSingleThreadSharedBackgroundBlocking2
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095
4 QtWebEngineCore 0x00000001305f5d0c 0x12c166000 + 71892236
5 QtWebEngineCore 0x00000001305f5b2d 0x12c166000 + 71891757
6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 19:: ThreadPoolBackgroundWorker
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095
4 QtWebEngineCore 0x00000001305f6057 0x12c166000 + 71893079
5 QtWebEngineCore 0x00000001305f5afd 0x12c166000 + 71891709
6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 20:: NetworkConfigWatcher
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x000000013063471f 0x12c166000 + 72148767
4 QtWebEngineCore 0x000000013055fe69 0x12c166000 + 71278185
5 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483
6 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098
7 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792
8 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194
9 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
10 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
11 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 21:: CacheThread_BlockFile
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff203161d2 kevent64 + 10
2 QtWebEngineCore 0x000000013063b26f 0x12c166000 + 72176239
3 QtWebEngineCore 0x00000001305dbff3 0x12c166000 + 71786483
4 QtWebEngineCore 0x0000000130593a32 0x12c166000 + 71490098
5 QtWebEngineCore 0x0000000130602a58 0x12c166000 + 71944792
6 QtWebEngineCore 0x0000000130602bea 0x12c166000 + 71945194
7 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
8 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 22:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095
4 QtWebEngineCore 0x00000001305f6057 0x12c166000 + 71893079
5 QtWebEngineCore 0x00000001305f5b8d 0x12c166000 + 71891853
6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 23:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095
4 QtWebEngineCore 0x00000001305f6057 0x12c166000 + 71893079
5 QtWebEngineCore 0x00000001305f5b8d 0x12c166000 + 71891853
6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 24:
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 libopenblas64_.0.dylib 0x000000010e1b923f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 25:
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 libopenblas64_.0.dylib 0x000000010e1b923f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 26:
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 libopenblas64_.0.dylib 0x000000010e1b923f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 27:
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 libopenblas64_.0.dylib 0x000000010e1b923f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 28:
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 libopenblas64_.0.dylib 0x000000010e1b923f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 29:
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 libopenblas64_.0.dylib 0x000000010e1b923f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 30:
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 libopenblas64_.0.dylib 0x000000010e1b923f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 31:
0 runtime 0x00007ffdffce499c 0x7ffdffc8a000 + 371100
Thread 32:
0 runtime 0x00007ffdffce499c 0x7ffdffc8a000 + 371100
Thread 33:: QFileInfoGatherer
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 QtCore 0x0000000125eebb8b 0x125ce9000 + 2108299
3 QtCore 0x0000000125eebafe QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
4 QtGui 0x000000012a85fe1d QFileInfoGatherer::run() + 125
5 QtCore 0x0000000125ee1d83 0x125ce9000 + 2067843
6 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 34:: QFileInfoGatherer
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 QtCore 0x0000000125eebb8b 0x125ce9000 + 2108299
3 QtCore 0x0000000125eebafe QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
4 QtGui 0x000000012a85fe1d QFileInfoGatherer::run() + 125
5 QtCore 0x0000000125ee1d83 0x125ce9000 + 2067843
6 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 35:: Dispatch queue: CoreController.server-connection-workloop
0 libobjc.A.dylib 0x00007fff201e07ae objc_msgSend + 46
1 com.apple.Foundation 0x00007fff213513d6 _decodeObject + 1249
2 com.apple.Foundation 0x00007fff210b2955 -[NSXPCDecoder _decodeObjectOfClasses:atObject:] + 63
3 com.apple.Foundation 0x00007fff210fc824 _NSXPCSerializationDecodeInvocationObjectOnlyArgumentArray + 449
4 com.apple.Foundation 0x00007fff210b15c6 -[NSXPCDecoder __decodeXPCObject:allowingSimpleMessageSend:outInvocation:outArguments:outArgumentsMaxCount:outMethodSignature:outSelector:isReply:replySelector:interface:] + 1390
5 com.apple.Foundation 0x00007fff210fc651 -[NSXPCDecoder _decodeMessageFromXPCObject:allowingSimpleMessageSend:outInvocation:outArguments:outArgumentsMaxCount:outMethodSignature:outSelector:interface:] + 33
6 com.apple.Foundation 0x00007fff210fb48b -[NSXPCConnection _decodeAndInvokeMessageWithEvent:flags:] + 418
7 com.apple.Foundation 0x00007fff210b3249 message_handler + 206
8 libxpc.dylib 0x00007fff20088c24 _xpc_connection_call_event_handler + 56
9 libxpc.dylib 0x00007fff20087a9b _xpc_connection_mach_event + 938
10 libdispatch.dylib 0x00007fff201988a6 _dispatch_client_callout4 + 9
11 libdispatch.dylib 0x00007fff201afaa0 _dispatch_mach_msg_invoke + 444
12 libdispatch.dylib 0x00007fff2019e493 _dispatch_lane_serial_drain + 263
13 libdispatch.dylib 0x00007fff201b05e2 _dispatch_mach_invoke + 484
14 libdispatch.dylib 0x00007fff201a0318 _dispatch_workloop_invoke + 1784
15 libdispatch.dylib 0x00007fff201a8c0d _dispatch_workloop_worker_thread + 811
16 libsystem_pthread.dylib 0x00007fff2033f45d _pthread_wqthread + 314
17 libsystem_pthread.dylib 0x00007fff2033e42f start_wqthread + 15
Thread 36:: QFileInfoGatherer
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 QtCore 0x0000000125eebb8b 0x125ce9000 + 2108299
3 QtCore 0x0000000125eebafe QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
4 QtGui 0x000000012a85fe1d QFileInfoGatherer::run() + 125
5 QtCore 0x0000000125ee1d83 0x125ce9000 + 2067843
6 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 37:
0 runtime 0x00007ffdffce499c 0x7ffdffc8a000 + 371100
Thread 38:: QFileInfoGatherer
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030fcde __psynch_cvwait + 10
2 QtCore 0x0000000125eebb8b 0x125ce9000 + 2108299
3 QtCore 0x0000000125eebafe QWaitCondition::wait(QMutex*, QDeadlineTimer) + 94
4 QtGui 0x000000012a85fe1d QFileInfoGatherer::run() + 125
5 QtCore 0x0000000125ee1d83 0x125ce9000 + 2067843
6 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 39:
0 runtime 0x00007ffdffce499c 0x7ffdffc8a000 + 371100
Thread 40:
0 runtime 0x00007ffdffce499c 0x7ffdffc8a000 + 371100
Thread 41:
0 runtime 0x00007ffdffce499c 0x7ffdffc8a000 + 371100
Thread 42:
0 runtime 0x00007ffdffce499c 0x7ffdffc8a000 + 371100
Thread 43:
0 runtime 0x00007ffdffce499c 0x7ffdffc8a000 + 371100
Thread 44:
0 runtime 0x00007ffdffce499c 0x7ffdffc8a000 + 371100
Thread 45:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe942feab8 ???
1 libsystem_kernel.dylib 0x00007fff2030d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x0000000130634933 0x12c166000 + 72149299
3 QtWebEngineCore 0x00000001305f54af 0x12c166000 + 71890095
4 QtWebEngineCore 0x00000001305f5d0c 0x12c166000 + 71892236
5 QtWebEngineCore 0x00000001305f5b8d 0x12c166000 + 71891853
6 QtWebEngineCore 0x000000013062e458 0x12c166000 + 72123480
7 libsystem_pthread.dylib 0x00007fff203428fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2033e443 thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000020464ae00 rcx: 0x0000000000000000 rdx: 0xffffffffffffffff
rdi: 0x6570eae56a3fa6ae rsi: 0x000000010ce4e088 rbp: 0x6570eae56a3fa6ae rsp: 0x000000010ce4e088
r8: 0x000000000000000b r9: 0x6570eae56a3fa6ae r10: 0x000000020464ae00 r11: 0x00007fff20226bcb
r12: 0x0000000000000103 r13: 0x00000000000010bc r14: 0x000000000000000b r15: 0x0000000000000016
rip: rfl: 0x0000000000000283
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0x7fff42a77000 - 0x7fff437d7fff libfaceCore.dylib (4.2.6) /System/Library/Frameworks/Vision.framework/libfaceCore.dylib
0x7fff437d8000 - 0x7fff438ebfff com.apple.TextRecognition (1.0 - 157) /System/Library/PrivateFrameworks/TextRecognition.framework/Versions/A/TextRecognition
0x7fff438ec000 - 0x7fff43904fff com.apple.Futhark (1.0 - 1) /System/Library/PrivateFrameworks/Futhark.framework/Versions/A/Futhark
0x7fff43986000 - 0x7fff43bf9fff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff44462000 - 0x7fff44466fff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45ddb000 - 0x7fff45ddefff libpmenergy.dylib (227.100.2) /usr/lib/libpmenergy.dylib
0x7fff47b00000 - 0x7fff47b40fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff48390000 - 0x7fff483abfff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff51757000 - 0x7fff51784fff com.apple.HelpData (2.3 - 201) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff51785000 - 0x7fff5179ffff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff517a0000 - 0x7fff5183ffff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff51a2e000 - 0x7fff51a31fff libpmsample.dylib (227.100.2) /usr/lib/libpmsample.dylib
0x7fff540d3000 - 0x7fff54109fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff556fd000 - 0x7fff55700fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff697df000 - 0x7fff697e3fff libmetal_timestamp.dylib (31001.189) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6bc2a000 - 0x7fff6bc30fff libCoreFSCache.dylib (200.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6bc31000 - 0x7fff6bc35fff libCoreVMClient.dylib (200.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6bc36000 - 0x7fff6bc45fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6bc46000 - 0x7fff6bc48fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6bc49000 - 0x7fff6bc51fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6bc52000 - 0x7fff6bc85fff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6bc86000 - 0x7fff6bcc2fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6bcc3000 - 0x7fff6be56fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6be57000 - 0x7fff6be61fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6be62000 - 0x7fff6bfdffff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6bfe0000 - 0x7fff6c008fff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d2a1000 - 0x7fff6d2f9fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e3a3000 - 0x7fff6e3aafff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e3ab000 - 0x7fff6e492fff com.apple.audio.AVFAudio (1.0 - 477.87) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6fa10000 - 0x7fff6fa22fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73cf0000 - 0x7fff73cfbfff com.apple.SymptomAnalytics (1.0 - 1431.120.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73f11000 - 0x7fff73f29fff com.apple.SymptomPresentationFeed (1.0 - 1431.120.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77a9f000 - 0x7fff77aa6fff libRosetta.dylib (203.46) /usr/lib/libRosetta.dylib
Translated Code Information:
tmp0: 0xffffffffffffffff tmp1: 0x00007ffe942fea8c tmp2: 0x00007fff20313924
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=2.3G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.3G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 3
Activity Tracing 256K 1
CG backing stores 3264K 6
CG image 372K 37
CoreAnimation 160K 17
CoreGraphics 12K 2
CoreServices 624K 2
CoreUI image data 3300K 26
Foundation 32K 2
Kernel Alloc Once 8K 1
MALLOC 943.6M 262
MALLOC guard page 192K 8
MALLOC_MEDIUM (reserved) 576.0M 8 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)
OpenGL GLSL 384K 4
Rosetta Arena 2048K 1
Rosetta Generic 1468K 364
Rosetta IndirectBranch 2048K 1
Rosetta JIT 128.0M 1
Rosetta Return Stack 916K 90
Rosetta Thread Context 900K 90
STACK GUARD 36K 9
Stack 195.1M 45
Stack Guard 56.2M 36
VM_ALLOCATE 147.1M 218
VM_ALLOCATE (reserved) 128.1M 17 reserved VM address space (unallocated)
__DATA 36.2M 639
__DATA_CONST 25.5M 306
__DATA_DIRTY 1713K 212
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 536.8M 195
__OBJC_RO 70.2M 1
__OBJC_RW 2480K 2
__TEXT 667.5M 622
__UNICODE 588K 1
mapped file 4.8G 1107
shared memory 844K 25
unshared pmap 10.5M 6
=========== ======= =======
TOTAL 8.5G 4370
TOTAL, minus reserved VM space 7.5G 4370
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/carinachen/Desktop/rothman/genes to focus on/ebp-2
> VW02B12L.3.1/ebp-2 VW02B12L.3.1 colored domain.cxs"
Log from Tue Nov 21 11:02:44 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> ui tool show AlphaFold
Populating font family aliases took 822 ms. Replace uses of missing font
family "Monospace" with one that exists to avoid this cost.
> alphafold predict
> MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAGNTPAGGTPGYRAPVPPDPQPTSAQARNPPVTVATTQASTTPSAPNPPGGLPAPSASATAAVAAAVASFPSPDTSIRPGGQITPGSQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMGAPNMGGPPNGYGGYGMMNGPPGSGAPMGGNPYNQQIKKDMDQARPWDPSAHMYQQQPQWGAMPPQQPHGYPGRPMNGQGATPTGPSSVLESLINQPQQYPGHHNQMGPPGDRNVAAQRAAAQQQQQQQQQQQQQRPGMVPNQGMMSSEDQTVYSAKLRNMRGSCDSLRTRARQCRHEGNHEAAHKLEVMLSVLEGKRVVSLEYLNHLEMWIARKQDFLNIAPMSQNQNHMGMNDPMMNGEHAMLGNGQVPNPYGGHPGYGHQQYMGPPPPHMQMHQPPMWHQQQHQQQQRMMPQDHMMMQGGGGPVHGMYRGDMGHDPMTSPVNNHRHAPYPNPAAMRNNMRMPNGPGPIGRDRNSMSGSSMSGPSSGAPSMNPMGTPNQKMGTPGSMGGMSGLDDLNYDDFLPNPTPIDALQPTLHVGQNSMNAGPPVQRSNLNETARKELQILDARFEIDPNHQRHDANHIIVVCKIRNQQFPPLRLVVPTTYPAGNVTVDRAVIDLDAYLYDDLQNSVYERLSRPGLSSITDYLNAWEEQVNQYQNQTSGGLDVAFNVGNDFFYDNLNL
Please cite ColabFold: Making protein folding accessible to all. Nature
Methods (2022) if you use these predictions.
Running AlphaFold prediction
[Repeated 7 time(s)]
> open "/Users/carinachen/Desktop/rothman/genes to focus on/cdk-12 B0285.1a
> /cdk-12 B0285.1a wildtype RAW.pdb"
Chain information for cdk-12 B0285.1a wildtype RAW.pdb #1
---
Chain | Description
A | No description available
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> select /A:317
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:317
8 atoms, 7 bonds, 1 residue, 1 model selected
> select /A:302-303
20 atoms, 21 bonds, 2 residues, 1 model selected
> select /A:302-303
20 atoms, 21 bonds, 2 residues, 1 model selected
> select /A:313-314
16 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:313-314
16 atoms, 15 bonds, 2 residues, 1 model selected
> select /A:311
12 atoms, 12 bonds, 1 residue, 1 model selected
> select /A:311
12 atoms, 12 bonds, 1 residue, 1 model selected
> select /A:311-366
453 atoms, 458 bonds, 56 residues, 1 model selected
> select /A:311-605
2429 atoms, 2478 bonds, 295 residues, 1 model selected
> color sel medium blue
> color sel red
> select clear
> save "/Users/carinachen/Desktop/rothman/genes to focus on/cdk-12 B0285.1a
> /cdk-12 B0285.1a colored domain.cxs"
> close
> open "/Users/carinachen/Desktop/rothman/genes to focus on/elt-7
> C18G1.2a.1/elt-7 C18G1.2a.1 wildtype RAW.pdb"
Chain information for elt-7 C18G1.2a.1 wildtype RAW.pdb #1
---
Chain | Description
A | No description available
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> select /A:141-142
21 atoms, 20 bonds, 2 residues, 1 model selected
> select /A:141-143
32 atoms, 31 bonds, 3 residues, 1 model selected
> select /A:138
19 atoms, 18 bonds, 1 residue, 1 model selected
> select /A:138-139
43 atoms, 42 bonds, 2 residues, 1 model selected
> select /A:137
16 atoms, 15 bonds, 1 residue, 1 model selected
> select /A:137-186
803 atoms, 809 bonds, 50 residues, 1 model selected
> select /A:77-131
838 atoms, 844 bonds, 55 residues, 1 model selected
> select /A:77-187
1750 atoms, 1764 bonds, 111 residues, 1 model selected
> select /A:137
16 atoms, 15 bonds, 1 residue, 1 model selected
> select /A:137-187
817 atoms, 824 bonds, 51 residues, 1 model selected
> color sel red
> select clear
> save "/Users/carinachen/Desktop/rothman/genes to focus on/elt-7
> C18G1.2a.1/elt-7 C18G1.2a.1 zinc finger.cxs"
> save "/Users/carinachen/Desktop/rothman/genes to focus on/elt-7
> C18G1.2a.1/elt-7 C18G1.2a.1 colored domain.cxs"
> close
> open "/Users/carinachen/Desktop/rothman/genes to focus on/ebp-2
> VW02B12L.3.1/ebp-2 RAW wildtype.pdb"
Chain information for ebp-2 RAW wildtype.pdb #1
---
Chain | Description
A | No description available
> ui tool show "Show Sequence Viewer"
> sequence chain /A
Alignment identifier is 1/A
> select /A:203-204
11 atoms, 10 bonds, 2 residues, 1 model selected
> select /A:203-213
89 atoms, 88 bonds, 11 residues, 1 model selected
> select /A:203-204
11 atoms, 10 bonds, 2 residues, 1 model selected
> select /A:203-234
263 atoms, 265 bonds, 32 residues, 1 model selected
> color sel red
> select clear
AlphaFold prediction finished
Results in /Users/carinachen/Downloads/ChimeraX/AlphaFold/prediction_25
> open
> /Users/carinachen/Downloads/ChimeraX/AlphaFold/prediction_25/best_model.pdb
Chain information for best_model.pdb #2
---
Chain | Description
A | No description available
> save "/Users/carinachen/Desktop/rothman/genes to focus on/ebp-2
> VW02B12L.3.1/ebp-2 VW02B12L.3.1 colored domain.cxs"
——— End of log from Tue Nov 21 11:02:44 2023 ———
opened ChimeraX session
OpenGL version: 4.1 Metal - 71.6.4
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Processor Name: Unknown
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 4 MB
Memory: 8 GB
Software:
System Software Overview:
System Version: macOS 11.4 (20F71)
Kernel Version: Darwin 20.5.0
Time since boot: 13 days 12:24
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Resolution: 2880 x 1800
UI Looks like: 1440 x 900 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Unknown crash |
comment:2 by , 2 years ago
| Status: | accepted → feedback |
|---|
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Hi Carina,
--Eric