Timeline



Aug 16, 2023:

4:51 PM ChangeLog edited by pett
(diff)
3:51 PM ChangeLog edited by pett
(diff)
3:51 PM ChangeLog edited by pett
(diff)
2:56 PM Ticket #9595 (Graphics crash, macOS 12.5.1, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]
11:21 AM Ticket #9594 (VR transmitting session: cycle detected) created by meghan.mccarthy@…
[…]
9:35 AM Ticket #9593 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
9:27 AM Ticket #9592 (Crash using open/save dialog) closed by pett
can't reproduce
9:25 AM Ticket #9591 (Crash in event loop during remote control) closed by pett
can't reproduce
9:23 AM Ticket #9590 (Crash in event loop during remote control) closed by pett
can't reproduce: Not a lot to go on
9:18 AM Ticket #9588 (Crash in event loop) closed by pett
can't reproduce
5:34 AM Ticket #9593 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]

Aug 15, 2023:

11:37 PM Ticket #9592 (Crash using open/save dialog) created by chimerax-bug-report@…
[…]
11:30 PM Ticket #9591 (Crash in event loop during remote control) created by chimerax-bug-report@…
[…]
11:29 PM Ticket #9590 (Crash in event loop during remote control) created by chimerax-bug-report@…
[…]
10:21 PM Ticket #9429 (BlastProtein failed: 'bytes' object has no attribute 'items') closed by pett
fixed
10:16 PM Ticket #9589 (Graphics crash, macOS 11.4, Radeon Pro 580) created by chimerax-bug-report@…
[…]
5:59 PM Ticket #9588 (Crash in event loop) created by chimerax-bug-report@…
[…]
2:05 PM Ticket #9587 (Histogram widget: operands could not be broadcast together with shapes) closed by pett
duplicate: Hi Kamalendu, Thanks for reporting this problem. It has been fixed, …
1:47 PM Ticket #9587 (Histogram widget: operands could not be broadcast together with shapes) created by kamalendu-pal@…
[…]
12:59 PM Ticket #9584 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:52 AM Ticket #9586 (KeyError matching selected regions) created by kamalendu-pal@…
[…]
11:46 AM Ticket #9585 (chain identity attribute non-functional) created by Elaine Meng
This chain identity (pseudo?)attribute that we added and that I am …
10:50 AM Ticket #9584 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
8:07 AM Ticket #9583 (SEQCROW: 'ArtistList' object has no attribute 'remove') created by chimerax-bug-report@…
[…]

Aug 14, 2023:

5:09 PM Ticket #9582 (Cannot find Python) created by davis797@…
[…]
4:00 PM Ticket #9581 (Rotamer library needs access to ui_name) created by pett
[…]
3:48 PM Ticket #9577 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
can't reproduce: 1.3
3:47 PM Ticket #9576 (QPainter::begin: Paint device returned engine == 0) closed by pett
duplicate
3:46 PM Ticket #9575 (Histogram widget: operands could not be broadcast together with shapes) closed by pett
duplicate
3:42 PM Ticket #9574 (Restoring new session in old ChimeraX) closed by pett
limitation: Hi Anushka, ChimeraX session files are typically not backwards …
3:00 PM Ticket #9573 (Opal web service failure) closed by pett
not a bug: Hi Stefan, We have gone to a different web service infrastructure …
2:31 PM Ticket #9580 (HTTP Error 500 fetching palette info) created by rkrishnan@…
[…]
2:23 PM Ticket #9572 (Crash opening mmCIF) closed by Greg Couch
can't reproduce: Need test file.
1:52 PM Ticket #9571 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Tarhan, Thanks for reporting this problem. In our experience it …
1:47 PM Ticket #9570 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
1:39 PM Ticket #9569 (MemoryError opening mmCIF) closed by pett
duplicate
1:33 PM Ticket #9579 (Mol2 'skip' atoms not accounted for in summaries) created by pett
The number of atoms/bonds/residues output in the MOLECULE section does …
12:31 PM Ticket #9578 (ISOLDE: wrapped C/C++ object of type QToolButton has been deleted) created by jheld@…
[…]
11:57 AM Ticket #9568 (Restore new session in old ChimeraX) closed by pett
duplicate
11:57 AM Ticket #8989 (TCIA 1.3.6.1.4.1.9328.50.17.177679383028944381508162168149189677080 ...) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/6c4caa2a6758e70ab0bccd2e7f67a1
11:50 AM Ticket #9567 (Restore new session in old ChimeraX) closed by pett
duplicate
11:48 AM Ticket #9566 (Antechamber failure) closed by pett
limitation: Hi Boaz, The calculation always works on my Mac (though it does have …
11:17 AM Ticket #9419 (SEG models opened from files should appear in Segmentation menu) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/864fbd826898a4ca0f39b1ec081565
11:07 AM Ticket #9563 ('SaveOptionsWidget' object has no attribute 'compute_sheets') closed by pett
duplicate
10:50 AM Ticket #9562 (numpy.bool defunct) closed by pett
duplicate: Hi, Thanks for reporting this problem. It was actually fixed in the …
8:57 AM Ticket #9577 (Crash using File→Open dialog on Windows and/or returning from function) created by chimerax-bug-report@…
[…]
8:53 AM Ticket #9576 (QPainter::begin: Paint device returned engine == 0) created by chimerax-bug-report@…
[…]
6:54 AM Ticket #9575 (Histogram widget: operands could not be broadcast together with shapes) created by chimerax-bug-report@…
[…]
5:05 AM Ticket #9574 (Restoring new session in old ChimeraX) created by anushka.ghosh@…
[…]
4:51 AM Ticket #9573 (Opal web service failure) created by stefan.knight@…
[…]
4:11 AM Ticket #9572 (Crash opening mmCIF) created by chimerax-bug-report@…
[…]
12:42 AM Ticket #9571 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by tei19@…
[…]

Aug 13, 2023:

2:45 PM Ticket #9570 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
1:41 PM Ticket #9569 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]
9:21 AM Ticket #9568 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]
4:08 AM Ticket #9567 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]

Aug 12, 2023:

9:53 AM Ticket #9566 (Antechamber failure) created by bshaanan@…
[…] 1qs0_couloumbic.log
5:12 AM Ticket #9565 (Session restore: invalid start byte) created by tim.passchier@…
[…]

Aug 11, 2023:

4:09 PM Ticket #9274 (Seg brush modes) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/dbec000c9d517d69b081d667207650
1:33 PM Ticket #9564 (GUI blank after upgrade 1.1 → 1.6) created by sudeshi.seneviratne@…
[…] chimera GUI bug.PNG
12:48 PM Ticket #9550 (Side view expose event: glDrawBuffer: invalid operation) closed by Tom Goddard
can't reproduce: Actually I don't think it lost the OpenGL context entirely, because …
12:32 PM Ticket #9563 ('SaveOptionsWidget' object has no attribute 'compute_sheets') created by chimerax-bug-report@…
[…]

Aug 10, 2023:

11:13 PM Ticket #9562 (numpy.bool defunct) created by harinivachu@…
[…]
5:47 PM Ticket #9556 (KeyError writing Mol2 file) closed by pett
fixed: Hi Eliza, Thanks for reporting yet another error with the Mol2 …
4:07 PM Ticket #9561 (Crash showing Rapid Access at startup) closed by pett
nonchimerax
4:03 PM Ticket #9560 (Possibly of interest: new Chemical Components Dictionary tool from PDBe) closed by pett
not a bug: I forwarded these by hand to chimerax-programmers@…
2:54 PM Ticket #9561 (Crash showing Rapid Access at startup) created by ria2@…
[…]
2:50 PM Ticket #9558 (Crash in event loop) closed by pett
can't reproduce
2:45 PM Ticket #9555 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
can't reproduce: Symptoms described match what we expect. User was running AlphaFold
2:34 PM Ticket #9554 (Crash in event loop) closed by pett
can't reproduce
2:33 PM Ticket #9553 (Crash using File→Open dialog on Windows and/or returning from function) closed by pett
can't reproduce: 1.3
2:32 PM Ticket #9552 (Crash in event loop) closed by pett
can't reproduce
2:31 PM Ticket #9551 (Crash in event loop) closed by pett
can't reproduce
2:05 PM 2023-8-10 edited by Tom Goddard
(diff)
2:03 PM Selina_Aug_10_2023.pdf attached to 2023-8-10 by Tom Goddard
Selina's slides for August 10, 2023 group meeting.
1:18 PM Ticket #9549 (Crash in garbage collection) closed by pett
can't reproduce: Hi Peter, Thanks for reporting this problem. Unfortunately, there is …
12:50 PM 2023-8-10 edited by Tom Goddard
(diff)
10:48 AM Ticket #9560 (Possibly of interest: new Chemical Components Dictionary tool from PDBe) created by Tristan Croll
[…]
10:43 AM Ticket #9559 (DICOM Segmentations 2D views should show overlay of active ...) created by Elaine Meng
The slice views of the image with segmentations currently show …
8:51 AM Ticket #9558 (Crash in event loop) created by chimerax-bug-report@…
[…]
8:49 AM Ticket #9557 (Registration server unavailable) created by carl.carruthers@…
[…]
8:32 AM Ticket #9556 (KeyError writing Mol2 file) created by egg08832@…
[…]
8:23 AM Ticket #9555 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
7:45 AM Ticket #9554 (Crash in event loop) created by chimerax-bug-report@…
[…]
7:11 AM Ticket #9553 (Crash using File→Open dialog on Windows and/or returning from function) created by chimerax-bug-report@…
[…]
4:20 AM Ticket #9552 (Crash in event loop) created by chimerax-bug-report@…
[…]
2:52 AM Ticket #9551 (Crash in event loop) created by chimerax-bug-report@…
[…]
12:22 AM Ticket #9550 (Side view expose event: glDrawBuffer: invalid operation) created by chimerax-bug-report@…
[…]

Aug 9, 2023:

7:18 PM Ticket #9549 (Crash in garbage collection) created by carlton.petermark.3v@…
[…]
3:00 PM Ticket #9470 (traceback restoring session saved after using Segmentations tool) closed by Zach Pearson
fixed: DICOM segmentations were being saved with the wrong numpy value type, …
2:36 PM Ticket #9547 (Drawing map: cannot select an axis to squeeze out which has size not ...) closed by Tom Goddard
can't reproduce: It appears the hdf reader returned an array for a single plane that …
2:05 PM Ticket #9548 (Change color-by-chain toolbar icon so blue color (chain A) is on left, ...) closed by Tom Goddard
fixed: Ok. I'm surprised you paid attention to the order. I agree it is …
2:02 PM Ticket #9548 (Change color-by-chain toolbar icon so blue color (chain A) is on left, ...) created by ah-ram_kim@…
Copied from ticket #9534. Hi, Thank you very much for quick fix! I …
1:50 PM Ticket #9539 (DICOM not readable on Windows) closed by Zach Pearson
fixed: Added code to ignore files starting with '._'
12:14 PM Ticket #9526 (DICOM Segmentations: include SEG models opened from DICOM in the list ...) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/864fbd826898a4ca0f39b1ec081565
11:08 AM Ticket #9546 (Error with saving mol2 file) closed by pett
fixed: Hi Elizabeth, Thanks for reporting this problem. It was a simple …
10:52 AM Ticket #9545 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.2.5
10:44 AM Ticket #9543 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
8:44 AM Ticket #9547 (Drawing map: cannot select an axis to squeeze out which has size not ...) created by chimerax-bug-report@…
[…]
7:27 AM Ticket #9546 (Error with saving mol2 file) created by Elizabeth.Gazaway@…
[…]
6:22 AM Ticket #9545 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]

Aug 8, 2023:

9:38 PM Ticket #9544 (Phenix mmCIF secondary structure problems) created by cpf@…
[…] When opening CIF files generated by Phenix refine, the …
5:54 PM Ticket #9543 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
5:25 PM Ticket #9542 (meeting start: encode_vr_room_position: Cannot cast ufunc output) closed by Tom Goddard
fixed: Fixed. The numpy.clip() function now gives an error when trying to …
2:56 PM Ticket #9542 (meeting start: encode_vr_room_position: Cannot cast ufunc output) created by phil.cruz@…
[…]
2:44 PM Ticket #9534 (mouse wheel-based zoom is not working) closed by Tom Goddard
fixed: Fixed in tonight's daily build (dated August 8, 2023). The Mac …
12:55 PM Dev2023-8-14 edited by Tom Goddard
(diff)
12:55 PM 2023-8-10 created by Tom Goddard
12:54 PM Dev2023-8-14 created by Tom Goddard
12:53 PM DeveloperMeetings edited by Tom Goddard
(diff)
11:00 AM Ticket #9541 (MemoryError open mmCIF) closed by pett
duplicate
10:55 AM Ticket #9540 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Tarhan, Thanks for reporting this problem. We believe it happens …
10:48 AM Ticket #9524 (DICOM Segmentations: going to different slice doesn't remove overlay) closed by Zach Pearson
worksforme: Seems to work on today's daily build (2023-08-08)
10:29 AM Ticket #9537 (Crash adding trigger handler) closed by pett
can't reproduce
10:28 AM Ticket #9541 (MemoryError open mmCIF) created by chimerax-bug-report@…
[…]
10:27 AM Ticket #9536 (MemoryError open mmCIF) closed by pett
duplicate
10:25 AM Ticket #9535 (Crash using Mac color panel) closed by pett
can't reproduce
10:17 AM Ticket #9540 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by tei19@…
[…]
9:42 AM Ticket #9539 (DICOM not readable on Windows) created by phil.cruz@…
[…]
9:42 AM Ticket #9538 ('ChimeraX-ISOLDE' custom initialization failed: Clipper distribution ...) created by chimerax-bug-report@…
[…]
2:05 AM Ticket #9537 (Crash adding trigger handler) created by chimerax-bug-report@…
[…]

Aug 7, 2023:

8:33 PM Ticket #9533 ("view" includes hidden elements) closed by Tom Goddard
fixed: Fixed. The view command was using all atoms and bonds of a residue if …
6:57 PM Ticket #9536 (MemoryError open mmCIF) created by chimerax-bug-report@…
[…]
3:42 PM Dev2023-8-7 edited by Tom Goddard
(diff)
2:02 PM Ticket #9535 (Crash using Mac color panel) created by chimerax-bug-report@…
[…]
1:22 PM Ticket #9397 (Segmentations (SEG) models should not appear in choices of ...) closed by Zach Pearson
fixed
1:18 PM Ticket #9534 (mouse wheel-based zoom is not working) created by ah-ram_kim@…
[…]
1:18 PM Dev2023-8-7 edited by Tom Goddard
(diff)
1:05 PM Ticket #9515 (Tried to add model with the same id as another model) closed by Tom Goddard
can't reproduce: Does not look like the user was reporting the error where restoring a …
12:54 PM Ticket #9530 (Crash in garbage collection while drawing volume histogram after ...) closed by Tom Goddard
can't reproduce: Probably a reference count bug. Log had several hundred commands …
12:03 PM Ticket #9529 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:55 AM Ticket #9527 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:30 AM Ticket #9519 (Load Toolshed cache: 'list' object has no attribute 'split') closed by pett
can't reproduce: 0.8!
10:46 AM Ticket #9517 (Crash using Save dialog) closed by pett
can't reproduce
10:45 AM Ticket #9533 ("view" includes hidden elements) created by pett
[…]
10:37 AM Ticket #9516 (Truncated HIS residue) closed by pett
duplicate
10:24 AM Ticket #9532 (Zero-height help window) created by pett
[…]

Aug 6, 2023:

12:37 AM Ticket #9531 (MemoryError opening mmCIF) created by dipikasharma303@…
[…]

Aug 5, 2023:

10:23 AM Ticket #9530 (Crash in garbage collection while drawing volume histogram after ...) created by chimerax-bug-report@…
[…]
4:29 AM Ticket #9529 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]

Aug 4, 2023:

9:37 PM Ticket #9528 (Crash in event loop) created by eopech@…
[…]
6:27 PM Ticket #9527 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
5:18 PM Ticket #9526 (DICOM Segmentations: include SEG models opened from DICOM in the list ...) created by Elaine Meng
was mentioned in #9397 but is really a separate thing. Would be nice …
5:08 PM Ticket #9525 (DICOM Segmentations: hard to resize cursor using touchpad Shift-scroll) created by Elaine Meng
I don't understand how this Shift-scroll is supposed to work on a …
4:58 PM Ticket #9524 (DICOM Segmentations: going to different slice doesn't remove overlay) created by Elaine Meng
I do see the nice overlay showing the segmented part of a slice. But …
2:01 PM Ticket #9523 (ISOLDE ResidueStepper holding reference to dead structure) created by jheld@…
[…]
1:21 PM Ticket #9522 (Interfaces/NetworkX: libbz2.so.1.0: cannot open shared object file: No ...) created by pradip.singh@…
[…]
1:08 PM Ticket #9521 ("make install" for a bundle on Windows very slow) created by Tom Goddard
If I do "make install" in the vive bundle directory on Windows …
9:19 AM Ticket #9520 (MemoryError opening mmCIF) created by m.daghan.okur@…
[…]
5:33 AM Ticket #9519 (Load Toolshed cache: 'list' object has no attribute 'split') created by chimerax-bug-report@…
[…]
2:57 AM Ticket #9518 (Crash using Save dialog) created by jens.luders@…
[…]
2:52 AM Ticket #9517 (Crash using Save dialog) created by chimerax-bug-report@…
[…]
1:27 AM Ticket #9516 (Truncated HIS residue) created by chimerax-bug-report@…
[…]

Aug 3, 2023:

7:32 PM Ticket #9515 (Tried to add model with the same id as another model) created by chimerax-bug-report@…
[…]
4:03 PM Ticket #9511 (Crash saving session including maps) closed by Tom Goddard
limitation: Looks like you were saving a session when ChimeraX crashed. Sorry …
3:37 PM Ticket #9514 (Save command history: No space left on device) closed by pett
nonchimerax
2:34 PM Ticket #9514 (Save command history: No space left on device) created by chimerax-bug-report@…
[…]
1:05 PM 2023-8-3 edited by Zach Pearson
(diff)
12:17 PM 2023-8-3 edited by Tom Goddard
(diff)
10:55 AM Ticket #9396 (Automatically set volume step to 1 on newly opened segmentations) closed by Zach Pearson
fixed: OK, should be fixed in tomorrow's build. Now whenever we create a new …
10:27 AM Ticket #9506 (Graphics crash, macOS 13.3.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
9:01 AM Ticket #9509 (Histogram widget: operands could not be broadcast together with shapes) closed by pett
duplicate: Hi Toni, Thanks for reporting this problem. It was fixed about 3 …
8:56 AM Ticket #9507 (Unknown crash) closed by pett
can't reproduce
8:40 AM Ticket #9513 (Nucleotide restore state is None) created by Emily.Rundlet@…
[…] The error occurs upon attempting to load a session file …
8:33 AM Ticket #9512 (Unable to open .cxs files saved in v1.6.1.) created by Emily.Rundlet@…
[…]
7:06 AM Ticket #9511 (Crash saving session including maps) created by bta4001@…
[…]
5:37 AM Ticket #9510 (UnicodeDecodeError reading PDB file) created by shabir.najmudin@…
[…]
2:39 AM Ticket #9509 (Histogram widget: operands could not be broadcast together with shapes) created by antonibltrn@…
[…]

Aug 2, 2023:

4:48 PM Ticket #9508 (TypeError setting framerate) created by Zach Pearson
Just another one of these Python 3.11-no-longer-does-type-coercion …
3:48 PM Ticket #9507 (Unknown crash) created by chimerax-bug-report@…
[…]
3:39 PM Ticket #9506 (Graphics crash, macOS 13.3.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]
1:06 PM Ticket #9501 (vr true: CompositorError_TextureUsesUnsupportedFormat) closed by Tom Goddard
can't reproduce
12:29 PM NIAID2023 edited by Elaine Meng
(diff)
10:43 AM Ticket #9503 (Silhouettes bug macOSX) closed by Tom Goddard
nonchimerax: Unfortunately there is one old Intel Mac laptop model that has this …
10:22 AM Ticket #9471 (pip install: bad Windows path) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/c0d7d993fa3d87069031a3bdad2eec
10:22 AM Ticket #9505 (pip install failure) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/c0d7d993fa3d87069031a3bdad2eec
9:53 AM Ticket #9504 (Histogram widget: operands could not be broadcast together with shapes) closed by pett
duplicate
9:37 AM Ticket #9505 (pip install failure) created by goddard@…
[…]
9:36 AM Ticket #9504 (Histogram widget: operands could not be broadcast together with shapes) created by chimerax-bug-report@…
[…]
9:21 AM Ticket #9503 (Silhouettes bug macOSX) created by elizabethmcfadden@…
[…] [[Image(...)]]
9:20 AM Ticket #9435 (StarMap: 'NoneType' object has no attribute 'strip') closed by pett
fixed: Fixed in starmap 1.2.17
9:20 AM Ticket #9452 (StarMap: Permission denied: 'run_starmap_medic.sh') closed by pett
fixed: Fixed in starmap 1.2.17
9:19 AM Ticket #9380 (StarMap: 'NoneType' object has no attribute 'strip') closed by pett
fixed: Fixed in starmap 1.2.17
9:16 AM Ticket #9502 (Crash in event loop) closed by pett
can't reproduce: Possibly during erasing/copying a volume.
9:09 AM Ticket #9502 (Crash in event loop) created by chimerax-bug-report@…
[…]
8:49 AM Ticket #9501 (vr true: CompositorError_TextureUsesUnsupportedFormat) created by phil.cruz@…
[…]
3:30 AM Ticket #9500 (XMAS: change_pseudobonds_style: could not convert string to float: '0,') created by chimerax-bug-report@…
[…]
3:05 AM Ticket #9499 (Registration failed to subscribe to announcements: HTTP Error 404: Not ...) created by paul.gouguet@…
[…]

Aug 1, 2023:

11:03 AM Dev2023-8-7 created by Tom Goddard
11:02 AM 2023-8-3 created by Tom Goddard
11:01 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:56 AM Ticket #8388 (gaps between pseudobonds and ribbons in printable representations) closed by pett
fixed: The CA-to-CA missing-structure pseudobonds seem to have been acceptable
9:29 AM Ticket #9498 (Restore new session in old ChimeraX) closed by pett
limitation
7:02 AM Ticket #9498 (Restore new session in old ChimeraX) created by chimerax-bug-report@…
[…]
1:49 AM Ticket #9478 (ISOLDE: unparameterized validation: 'NoneType' object has no attribute ...) closed by Tristan Croll
duplicate: Duplicate of #9107.

Jul 31, 2023:

5:19 PM Dev2023-7-31 edited by Tom Goddard
(diff)
5:15 PM Dev2023-7-31 edited by Tom Goddard
(diff)
4:45 PM Dev2023-7-31 edited by Tom Goddard
(diff)
4:27 PM Dev2023-7-31 edited by Tom Goddard
(diff)
4:17 PM Dev2023-7-31 edited by Tom Goddard
(diff)
4:09 PM Dev2023-7-31 edited by Tom Goddard
(diff)
3:59 PM Ticket #9497 (Crash querying cursor position) closed by Tom Goddard
can't reproduce: We've seen the crash in this line of code calling one of two Qt …
3:58 PM Ticket #9495 (Crash in event loop) closed by pett
limitation: Hi Jackson, Thanks for the info and I'm glad you're otherwise …
3:43 PM Ticket #9490 (Phil Cruz has invited you to collaborate on Box) closed by Tom Goddard
fixed: Thanks. I did not need the zip file to fix the collada session …
3:41 PM Ticket #9489 (Collada not saved in session) closed by Tom Goddard
fixed: Fixed. The Collada surfaces were not being saved in session files. …
3:23 PM Ticket #9488 (Qt user interface panels blank) closed by Tom Goddard
nonchimerax
3:20 PM Ticket #9486 (Graphics crash, macOS 13.5, Intel UHD Graphics 617) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
2:14 PM Ticket #9494 (Attempt to use Opal web services) closed by pett
not a bug
2:12 PM Ticket #9493 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Tanner, Thanks for reporting this problem. As far as we know, it …
2:05 PM Ticket #9491 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
1:47 PM Ticket #9487 (Crash in event loop) closed by pett
can't reproduce
1:43 PM Ticket #9497 (Crash querying cursor position) created by chimerax-bug-report@…
W{{{ The following bug report has been submitted: Platform: …
1:34 PM Ticket #9496 (Help viewer password reject: No module named 'sip') created by chimerax-bug-report@…
[…]
1:29 PM Ticket #9495 (Crash in event loop) created by sheppard@…
[…]
12:39 PM Ticket #7234 (Apple notarization altool command will be discontinued Fall 2023) closed by Tom Goddard
fixed: Done. ChimeraX notarization uses notarytool and the build and …
12:34 PM Ticket #9480 (Probable crash in garbage collection) closed by Tom Goddard
can't reproduce
12:23 PM Ticket #9494 (Attempt to use Opal web services) created by chimerax-bug-report@…
[…]
12:06 PM Ticket #9493 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by tape9291@…
[…]
11:47 AM Ticket #9482 (Graphics crash, macOS 13.4.1, Intel Iris Plus Graphics) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
11:45 AM Ticket #9481 (AlphaFold: no space left on device) closed by Tom Goddard
nonchimerax: A ChimeraX AlphaFold prediction runs on Google Colab, and the sequence …
11:34 AM Ticket #9492 (Would like a MSI installer) created by Greg Couch
Many system administrators prefer MSI installers. See …
11:12 AM Ticket #9479 (Problems with coarse-grained structures) closed by pett
not a bug: Hi Siyoung, Also, since this is not an atom-level structure, ChimeraX …
10:08 AM Ticket #9491 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
8:22 AM Ticket #9490 (Phil Cruz has invited you to collaborate on Box) created by noreply@…
[…]
8:06 AM Ticket #9489 (Collada not saved in session) created by phil.cruz@…
[…]
6:41 AM Ticket #9488 (Qt user interface panels blank) created by kuku556@…
[…] screenshot.jpg
6:21 AM Ticket #9487 (Crash in event loop) created by chimerax-bug-report@…
[…]

Jul 30, 2023:

7:36 PM Ticket #9486 (Graphics crash, macOS 13.5, Intel UHD Graphics 617) created by chimerax-bug-report@…
[…]
7:15 PM Ticket #9485 (Crash in event loop while toolshed check running) created by chimerax-bug-report@…
[…]
1:36 PM Ticket #9484 (Unable to save session because ModellerWebJob class not found) created by jheld@…
[…]
1:31 PM Ticket #9483 (No error message when timeout exceeded) created by jheld@…
[…]
7:46 AM Ticket #9482 (Graphics crash, macOS 13.4.1, Intel Iris Plus Graphics) created by chimerax-bug-report@…
[…]

Jul 29, 2023:

11:44 PM Ticket #9481 (AlphaFold: no space left on device) created by gideanemendes.o@…
[…] log.txt
9:29 PM Ticket #9480 (Probable crash in garbage collection) created by chimerax-bug-report@…
[…]
9:31 AM Ticket #9479 (Problems with coarse-grained structures) created by kkssy141@…
[…] cg_cut.pdb

Jul 28, 2023:

9:06 PM Ticket #9478 (ISOLDE: unparameterized validation: 'NoneType' object has no attribute ...) created by chimerax-bug-report@…
[…]

Jul 27, 2023:

5:12 PM Ticket #9158 (2dlabels arrow with bad args causes huge memory usage) closed by pett
fixed: Arrows (and labels) are depicted with textures, so creating an arrow …
2:38 PM Ticket #9477 (Networks: libbz2.so.1.0: cannot open shared object file: No such file ...) closed by Greg Couch
wontfix: Not sure why libbz2.so.1.0 is being referred to. On CentOS 7, you …
2:06 PM Ticket #9421 (Should we update to Qt 6.5 which requires macOS 11?) closed by Tom Goddard
fixed: We will use Qt 6.3.2 for the ChimeraX 1.7 release and current daily …
2:05 PM 2023-7-27 edited by pett
(diff)
2:03 PM Ticket #9378 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by Tom Goddard
fixed: Fixed. Will use Qt 6.3.2 for ChimeraX daily builds and ChimeraX 1.7 …
1:37 PM 2023-7-27 edited by Tom Goddard
(diff)
12:49 PM Ticket #9473 (Qt 6.5: menus only show up on second monitor) closed by Tom Goddard
can't reproduce: Your explanation of the problem isn't very clear to me. Do you mean …
11:05 AM Ticket #9477 (Networks: libbz2.so.1.0: cannot open shared object file: No such file ...) created by pradip.singh@…
[…]
10:49 AM Ticket #9474 (Graphics crash, macOS 13.4.1, Intel Iris Plus Graphics 640) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
10:11 AM Ticket #9476 (MemoryError opening mmCIF) created by elshaimaa.ali@…
[…]
10:09 AM Ticket #9475 (MemoryError opening mmCIF) closed by pett
can't reproduce
9:47 AM Ticket #9475 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]
9:34 AM Ticket #9474 (Graphics crash, macOS 13.4.1, Intel Iris Plus Graphics 640) created by chimerax-bug-report@…
[…]

Jul 26, 2023:

6:54 PM Ticket #9473 (Qt 6.5: menus only show up on second monitor) created by Tony Schaefer
[…] Screenshot 2023-07-26 193923.png
6:04 PM Ticket #9472 (MemoryError opening mmCIF) created by i.v.sorokin@…
[…]
5:59 PM Ticket #9471 (pip install: bad Windows path) created by Tony Schaefer
[…]
3:50 PM Ticket #9190 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
fixed: This was a problem with the 6.4 version of the Qt windowing toolkit. …
3:44 PM Ticket #9466 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
1:13 PM Ticket #9470 (traceback restoring session saved after using Segmentations tool) created by Elaine Meng
[…] segses.cxs
1:00 PM Ticket #9397 (Segmentations (SEG) models should not appear in choices of ...) reopened by Elaine Meng
not fixed: I just opened a DICOM with CT + SEG and all the SEG models …
12:58 PM Ticket #9469 (TCIA KO image fails to open) created by Zach Pearson
open 1.3.6.1.4.1.14519.5.2.1.2103.7010.263376.2.1 fromDatabase tcia …
12:55 PM Ticket #9468 (Opening TCIA NM fails) created by Zach Pearson
open 1.3.6.1.4.1.14519.5.2.1.1600.1203.284561931367697973213377432005 …
12:53 PM Ticket #9467 (Opening TCIA ultrasound fails) created by Zach Pearson
open 1.3.6.1.4.1.14519.5.2.1.1600.1201.228673661852595420201278705709 …
11:34 AM Ticket #9466 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
11:26 AM phenix-7-27-23 edited by pett
(diff)
11:21 AM phenix-7-27-23 edited by pett
(diff)
10:46 AM Ticket #9465 (Report chirality) created by steffen@…
Implement a command to report chirality, ala Chimera's "chirality" command.
10:07 AM Ticket #9461 (Session save: DLL load failed while importing _serialize) closed by Greg Couch
limitation: It looks like your ChimeraX installation got corrupted some how. …
9:35 AM Ticket #9464 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Mark, Thanks for reporting this problem. We believe it happens …
9:15 AM Ticket #9463 (XMAS: crash in ~QGridLayout()) closed by pett
duplicate: The fix for this problem is sitting in a pull request on the XMAS …
9:07 AM Ticket #9460 (No seq_conservation attribute) closed by pett
not a bug: Hi Humood, The seq_conservation attribute only exists if you have …
8:41 AM Ticket #9464 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by maf95@…
[…]
2:34 AM Ticket #9463 (XMAS: crash in ~QGridLayout()) created by chimerax-bug-report@…
[…]
1:47 AM Ticket #9462 (Crash processing Modeller results) created by chimerax-bug-report@…
[…]

Jul 25, 2023:

11:54 PM Ticket #9461 (Session save: DLL load failed while importing _serialize) created by 383365989@…
[…]
6:18 PM phenix-7-27-23 edited by pett
(diff)
6:18 PM phenix-7-27-23 edited by pett
(diff)
6:18 PM phenix-7-27-23 edited by pett
(diff)
6:18 PM phenix-7-27-23 edited by pett
(diff)
6:06 PM phenix-7-27-23 edited by pett
(diff)
5:48 PM phenix-7-27-23 created by pett
5:32 PM Features edited by pett
(diff)
4:18 PM Ticket #9414 (Crash emitting color_pause signal) closed by Tom Goddard
fixed: Fixed a few months ago in daily builds. This crash was fixed in …
4:16 PM Ticket #9460 (No seq_conservation attribute) created by halanzi@…
[…]
2:35 PM Ticket #9458 (Table session save: selectionModel is None) closed by Zach Pearson
fixed
1:08 PM Ticket #9445 (UniProt problems) closed by pett
fixed: UniProt has fixed their web site. Things should work now. --Eric
12:58 PM Ticket #9344 (Wide data throws off orthoplane views) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/49ebdb47548e47b2e29438ebb9e08d
10:51 AM Ticket #9457 (vseries unreliable coloring) closed by Tom Goddard
not a bug: When a volume series is played with "vseries play #1" it deletes all …
10:17 AM Ticket #9455 (Segger drawing is None) closed by Tom Goddard
fixed: Fixed. The user deleted the simulated map for an atomic model after …
9:50 AM Ticket #9453 (Graphics crash, macOS 13.4.1, Intel Iris Plus Graphics 655) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash.
9:46 AM Ticket #9451 (UniProt name to id web service not working) closed by Tom Goddard
fixed: Fixed. UniProt fixed their web service.
9:42 AM 2023-7-27 edited by Tom Goddard
(diff)
9:41 AM Dev2023-7-31 created by Tom Goddard
9:41 AM 2023-7-27 created by Tom Goddard
9:40 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:25 AM Ticket #9456 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
9:16 AM Ticket #9454 (Crash using File→Open on Windows and/or in return statement) closed by pett
can't reproduce: 1.3
8:24 AM Ticket #9459 (Read DICOM files that don't have .dcm (or any) extension) created by phil.cruz@…
[…]
8:05 AM Ticket #9458 (Table session save: selectionModel is None) created by chimerax-bug-report@…
[…]
7:06 AM Ticket #9457 (vseries unreliable coloring) created by Tristan Croll
[…]
6:50 AM Ticket #9456 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
6:30 AM Ticket #9455 (Segger drawing is None) created by chimerax-bug-report@…
[…]
6:17 AM Ticket #9454 (Crash using File→Open on Windows and/or in return statement) created by chimerax-bug-report@…
[…]
1:45 AM Ticket #9453 (Graphics crash, macOS 13.4.1, Intel Iris Plus Graphics 655) created by chimerax-bug-report@…
[…]

Jul 24, 2023:

9:01 PM Ticket #9452 (StarMap: Permission denied: 'run_starmap_medic.sh') created by scluo@…
[…]
5:01 PM Dev2023-7-24 edited by Tom Goddard
(diff)
3:27 PM ChangeLog edited by Greg Couch
(diff)
2:28 PM Ticket #9446 (vseries play: oscillate ignores "loop false") closed by Tom Goddard
fixed
2:28 PM Ticket #9446 (vseries play: oscillate ignores "loop false") reopened by Tom Goddard
2:27 PM Ticket #9446 (vseries play: oscillate ignores "loop false") closed by Tom Goddard
fixed: Fixed. In oscillate mode vseries play kept looping even with the …
2:13 PM Ticket #9447 (QOpenGLContext::makeCurrent() called with non-opengl surface) closed by Tom Goddard
nonchimerax: Looks like your graphics driver has problems. The only way to fix …
2:11 PM Ticket #9450 (Session restore: 'list' object has no attribute 'values') closed by pett
duplicate
2:10 PM Ticket #9449 (Session restore: 'list' object has no attribute 'values') closed by pett
limitation: Hi Krish, Session files are not backwards compatible. To restore …
1:58 PM Ticket #9443 (Graphics crash, macOS 11.7.7, Iris Plus Graphics 650) closed by Tom Goddard
nonchimerax: Apple Intel graphics driver crash. Unfortunately Apple's Intel …
1:54 PM Ticket #9441 (MemoryError saving map in session) closed by Tom Goddard
not a bug: The error message when ChimeraX is saving a session ("MemoryError") …
1:33 PM Ticket #9442 (Crash deleting tool) closed by pett
can't reproduce
1:23 PM Ticket #9440 (Add Charge failure) closed by pett
duplicate
1:22 PM Ticket #9439 (Add Charge failure) closed by pett
duplicate
1:21 PM Ticket #9438 (Add Charge failure) closed by pett
can't reproduce: User's email address is wrong.
11:14 AM Ticket #9434 (glClear: invalid framebuffer operation) closed by Tom Goddard
duplicate
11:10 AM Ticket #9451 (UniProt name to id web service not working) created by goddard@…
[…]
10:31 AM Ticket #9433 (Crash showing Rapid Access at startup) closed by pett
can't reproduce: Linux
10:18 AM Ticket #9432 (Crash during garbage collection) closed by pett
can't reproduce
9:02 AM Ticket #9450 (Session restore: 'list' object has no attribute 'values') created by rkrishnan@…
[…]
8:51 AM Ticket #9449 (Session restore: 'list' object has no attribute 'values') created by rkrishnan@…
[…]
8:16 AM Ticket #9448 (Crash after opening session file) created by pradip.singh@…
[…]
2:46 AM Ticket #9447 (QOpenGLContext::makeCurrent() called with non-opengl surface) created by shreyapundir134@…
[…]
2:04 AM Ticket #9446 (vseries play: oscillate ignores "loop false") created by Tristan Croll
[…]
12:31 AM Ticket #9445 (UniProt problems) created by 32035651@…
[…]

Jul 23, 2023:

11:50 PM Ticket #9444 (MemoryError opening mmCIF) created by Praffuls@…
[…]
12:37 PM Ticket #9443 (Graphics crash, macOS 11.7.7, Iris Plus Graphics 650) created by aprilguo829@…
[…]
11:05 AM Ticket #9442 (Crash deleting tool) created by chimerax-bug-report@…
[…]
9:32 AM Ticket #9441 (MemoryError saving map in session) created by shuhui_wang@…
[…]
3:11 AM Ticket #9440 (Add Charge failure) created by haniehtanhaeiana@…
[…]
3:11 AM Ticket #9439 (Add Charge failure) created by haniehtanhaeiana@…
[…]
3:11 AM Ticket #9438 (Add Charge failure) created by haniehtanhaeiana@…
[…]
1:06 AM Ticket #9437 (DICOM: bits_allocated is None) created by Scooter Morris
[…]
12:39 AM Ticket #9436 (MemoryError opening mmCIF) created by chimerax-bug-report@…
[…]

Jul 22, 2023:

8:04 PM Ticket #9435 (StarMap: 'NoneType' object has no attribute 'strip') created by scluo@…
[…] wsl install.PNG
6:02 PM Ticket #9434 (glClear: invalid framebuffer operation) created by glbyudavis@…
[…]
11:33 AM Ticket #9433 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
6:27 AM Ticket #9432 (Crash during garbage collection) created by chimerax-bug-report@…
[…]

Jul 21, 2023:

6:16 PM Dev2023-7-24 edited by Tom Goddard
(diff)
6:00 PM Ticket #9431 (Restoring VR session on Mac ARM fails) closed by Tom Goddard
fixed: Fixed. The problem is the pyopenvr PyPi package ChimeraX uses to talk …
5:45 PM Ticket #9431 (Restoring VR session on Mac ARM fails) created by phil.cruz@…
[…]
5:35 PM Ticket #9430 (Save VTK data in sessions) closed by Tom Goddard
fixed: Fixed. The VTK file reader did not mark the VTK models to have their …
5:30 PM Ticket #9430 (Save VTK data in sessions) created by phil.cruz@…
[…]
3:25 PM Ticket #9429 (BlastProtein failed: 'bytes' object has no attribute 'items') created by chimerax-bug-report@…
[…]
2:16 PM Ticket #9428 (Alphafold2 collab notebook error message) closed by Tom Goddard
can't reproduce: I've seen this error before and it is a bug in Google Colab, but some …
1:59 PM Ticket #9426 (glClear: invalid framebuffer operation) closed by Tom Goddard
nonchimerax: External monitor Qt problem. Please don't continue reporting this as …
1:28 PM Ticket #9428 (Alphafold2 collab notebook error message) created by bregman3@…
[…] [[Image(...)]]
1:21 PM Ticket #9425 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate: Hi Songzhe, Thanks for reporting this problem. We find it happens …
1:17 PM 2023-7-20 edited by Tom Goddard
(diff)
12:49 PM Ticket #9427 (Allow setting directory to save images with snapshot toolbar button) closed by Tom Goddard
fixed: Done. I added a snapshot command. It does the same things as …
12:47 PM Ticket #9420 (Showing single plane of .nii file gives traceback) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/6a0b07004cb62374c25022d5645e80
12:42 PM Ticket #9427 (Allow setting directory to save images with snapshot toolbar button) created by goddard@…
[…]
11:55 AM Ticket #9426 (glClear: invalid framebuffer operation) created by glbyudavis@…
[…]
10:51 AM Ticket #9423 ("swapaa interactive" for non-rotamer res type produces traceback) closed by pett
fixed
10:28 AM Ticket #9425 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by jackieliu0406@…
[…]
9:00 AM Ticket #9422 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
12:58 AM Ticket #9424 (Crash saving session) created by valerie.gaudin@…
[…]
12:21 AM Ticket #9423 ("swapaa interactive" for non-rotamer res type produces traceback) created by chimerax-bug-report@…
[…]

Jul 20, 2023:

11:27 PM Ticket #9422 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
5:41 PM Ticket #9418 (ISOLDE: various simulation-related problems) closed by pett
duplicate
5:40 PM Ticket #9417 (ISOLDE: various simulation-related problems) closed by pett
duplicate
5:27 PM Ticket #9421 (Should we update to Qt 6.5 which requires macOS 11?) created by goddard@…
[…]
4:26 PM Ticket #9420 (Showing single plane of .nii file gives traceback) created by chimerax-bug-report@…
[…]
4:11 PM Ticket #9394 (using Segmentations tool to create a segmentation and then saving ...) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/a3d3e5db24fa62d689ca38030d09d2
4:06 PM Ticket #9395 (clicking "Remove" on Segmentations tool to remove the existing ...) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/0da22ae1d412a456a9ce9e15d3c184
4:05 PM Ticket #9397 (Segmentations (SEG) models should not appear in choices of ...) closed by Zach Pearson
fixed: [https://github.com/RBVI/ChimeraX/commit/176154b00cfa4f61318185787d9919
3:53 PM Ticket #9419 (SEG models opened from files should appear in Segmentation menu) created by Zach Pearson
2:46 PM Ticket #9418 (ISOLDE: various simulation-related problems) created by chimerax-bug-report@…
[…]
2:16 PM Ticket #9417 (ISOLDE: various simulation-related problems) created by chimerax-bug-report@…
[…]
2:03 PM NIAID2023 edited by Elaine Meng
(diff)
2:01 PM NIAID2023 edited by Elaine Meng
(diff)
1:54 PM NIAID2023 edited by Elaine Meng
(diff)
1:49 PM Ticket #9416 (ISOLDE: various simulation-related problems) created by chimerax-bug-report@…
[…]
1:26 PM NIAID2023 edited by Elaine Meng
(diff)
12:45 PM Ticket #9415 (Trouble with a daily build installing a plugin) closed by pett
duplicate: Hi Barry, The way plugins get installed in the daily build changed …
11:00 AM Ticket #9409 (Crash handling QTimer callback) closed by pett
duplicate: Duplicate of #9414
10:47 AM Ticket #9412 (No numpy.bool) closed by Tom Goddard
fixed: Fixed a few days ago. One or two daily builds had this bug after …
10:47 AM Ticket #9413 (Destroy tool status bar: wrapped C/C++ object of type QScreen has been ...) closed by pett
duplicate: Hi Barbara, Thanks for reporting this problem. I'm pretty sure it's …
10:33 AM Ticket #9411 (Crash showing save dialog on Linux) closed by pett
can't reproduce
9:47 AM Ticket #9415 (Trouble with a daily build installing a plugin) created by barry.dezonia@…
[…]
8:20 AM Ticket #9414 (Crash emitting color_pause signal) created by edk4001@…
[…]
7:02 AM Ticket #9413 (Destroy tool status bar: wrapped C/C++ object of type QScreen has been ...) created by bludeke@…
[…]
6:50 AM Ticket #9412 (No numpy.bool) created by chimerax-bug-report@…
[…]
5:52 AM Ticket #9411 (Crash showing save dialog on Linux) created by chimerax-bug-report@…
[…]

Jul 19, 2023:

8:07 PM Ticket #9388 (Blank HTML widgets in daily build) closed by Tom Goddard
fixed: Fixed. Added Apple notarization entitlement …
3:20 PM Ticket #9405 (Allow reading and writing 16-bit float MRC files) closed by Tom Goddard
fixed: Done. In ChimeraX daily builds dated July 19, 2023 and later. …
2:33 PM Ticket #9410 (mmCIF writing vs. blank chain IDs) created by Tristan Croll
[…]
1:24 PM Ticket #9409 (Crash handling QTimer callback) created by edk4001@…
[…]
1:20 PM Ticket #9408 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by Tom Goddard
nonchimerax: The ChimeraX error is because you have a defective graphics driver. …
1:08 PM Ticket #9408 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by carmen.apostol@…
[…]
1:00 PM Ticket #9407 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by Tom Goddard
nonchimerax: Looks like a defective OpenGL driver.
12:21 PM Ticket #9407 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by chimerax-bug-report@…
[…]
11:33 AM Ticket #9406 (SEQCROW during session restore: local variable 'model' referenced ...) created by Tristan Croll
[…]
10:46 AM Ticket #9400 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
10:40 AM Ticket #9405 (Allow reading and writing 16-bit float MRC files) created by ricardorighetto@…
From: Ricardo Righetto via ChimeraX-users …
10:14 AM Ticket #9404 ('center' arg when opening small molecules) created by Tristan Croll
[…]
9:26 AM Ticket #9401 (Windows fatal exception: access violation) closed by pett
can't reproduce
9:14 AM Ticket #9399 (No space left on device) closed by pett
duplicate
9:12 AM Ticket #9393 (UnicodeDecodeError opening PDB file) closed by pett
duplicate
7:57 AM Ticket #9403 (Crash opening mmCIF file) created by chimerax-bug-report@…
[…]
7:44 AM Ticket #9402 (Crash opening mmCIF file) created by chimerax-bug-report@…
[…]
5:47 AM Ticket #9401 (Windows fatal exception: access violation) created by chimerax-bug-report@…
[…]

Jul 18, 2023:

7:08 PM Ticket #9400 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by jackieliu0406@…
[…]
6:47 PM Ticket #9399 (No space left on device) created by 2173910144@…
[…]
6:28 PM WikiStart edited by Tom Goddard
(diff)
4:57 PM Ticket #9292 (wrapped C/C++ object of type ChainListWidget has been deleted) closed by pett
fixed: Fix: …
3:19 PM Ticket #9392 (No Report a Bug button with Qt 6.5.1 on Mac) closed by Tom Goddard
fixed: Fixed. Forced use of non-native QErrorMessage dialog on Mac.
2:41 PM Ticket #9398 (issues opening 4D heart ultrasound data from Rubinstein) created by Elaine Meng
[…]
2:33 PM Ticket #9397 (Segmentations (SEG) models should not appear in choices of ...) created by Elaine Meng
SEG models should be suppressed from the Segmentations dialog "Models" …
2:28 PM Ticket #9396 (Automatically set volume step to 1 on newly opened segmentations) created by Elaine Meng
Most of the time, click-drag with segmentation cursor in slice view …
2:23 PM Ticket #9395 (clicking "Remove" on Segmentations tool to remove the existing ...) created by Elaine Meng
[…]
2:22 PM Ticket #9394 (using Segmentations tool to create a segmentation and then saving ...) created by Elaine Meng
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1:34 PM Ticket #9393 (UnicodeDecodeError opening PDB file) created by chimerax-bug-report@…
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12:21 PM Dev2023-7-24 created by Tom Goddard
12:20 PM 2023-7-20 created by Tom Goddard
12:19 PM DeveloperMeetings edited by Tom Goddard
(diff)
11:29 AM Ticket #9391 (ImportError: cannot import name 'float' from 'numpy') closed by Tom Goddard
fixed: Fixed. Found 4 places in code: fit in map, cage builder, measure …
11:22 AM Ticket #9392 (No Report a Bug button with Qt 6.5.1 on Mac) created by goddard@…
[…]
11:22 AM Ticket #9391 (ImportError: cannot import name 'float' from 'numpy') created by goddard@…
[…]
11:10 AM Ticket #9390 (Qt WebEngine initialized in nogui offscreen mode) created by Greg Couch
While Qt needs to be initialized in nogui offscreen mode to be able to …
9:32 AM Ticket #9389 (H add to O5') created by ryelmar@…
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9:31 AM Ticket #9385 (Crash in event loop) closed by pett
can't reproduce
9:27 AM Ticket #9388 (Blank HTML widgets in daily build) created by Elaine Meng
[…] Screen Shot 2023-07-18 at 9.26.49 AM.png
7:00 AM Ticket #9387 (ESPALOMA-based parameter estimation) created by Tristan Croll
[…] v7n_from_chimerax_mol2.png

Jul 17, 2023:

5:37 PM Ticket #9386 (ImportError: cannot import name 'bool' from 'numpy') closed by Tom Goddard
fixed: Fixed. Updated to numpy 1.25 today and it no longer has numpy.bool. …
5:30 PM Ticket #9386 (ImportError: cannot import name 'bool' from 'numpy') created by goddard@…
[…]
4:08 PM Dev2023-7-17 edited by Tom Goddard
(diff)
3:38 PM Ticket #9385 (Crash in event loop) created by chimerax-bug-report@…
[…]
1:48 PM Ticket #9379 (ViewDockX data not in session) closed by pett
fixed: Hi Sabrina, With further investigation I have determined that this is …
12:03 PM Ticket #9383 (~surf vs. surface model display) closed by Tom Goddard
not a bug: This is how it works in Chimera and has always worked in ChimeraX. I …
11:46 AM Ticket #9384 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by pett
duplicate
11:31 AM Ticket #9381 (Failed reading bytes from IMOD file) closed by Tom Goddard
can't reproduce: File might be truncated, or the file contains unexpected data. No way …
11:31 AM Ticket #9382 (color by attr: '<' not supported between instances of 'NoneType' and ...) closed by pett
fixed
5:24 AM Ticket #9384 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by chimerax-bug-report@…
[…]
5:10 AM Ticket #9383 (~surf vs. surface model display) created by Tristan Croll
[…]
4:27 AM Ticket #9382 (color by attr: '<' not supported between instances of 'NoneType' and ...) created by chimerax-bug-report@…
[…]
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