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Opened 2 years ago
Closed 2 years ago
#9519 closed defect (can't reproduce)
Load Toolshed cache: 'list' object has no attribute 'split'
| Reported by: | Owned by: | Greg Couch | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Tool Shed | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-3.10.0-1062.18.1.el7.x86_64-x86_64-with-centos-7.7.1908-Core
ChimeraX Version: 0.8 (2018-12-17)
Description
(Describe the actions that caused this problem to occur here)
Log:
Startup Messages
---
note | Traceback (most recent call last):
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 338, in __init__
self.init_available_from_cache(logger)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/core/toolshed/__init__.py", line 445, in
init_available_from_cache
abc.load_from_cache()
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/core/toolshed/available.py", line 61, in load_from_cache
b = _build_bundle(d)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/core/toolshed/available.py", line 242, in _build_bundle
keywords = _extract_extra_keywords(keywords)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/core/toolshed/installed.py", line 270, in
_extract_extra_keywords
all_kwds = [k.strip() for k in kwds.split(',')]
AttributeError: 'list' object has no attribute 'split'
UCSF ChimeraX version: 0.8 (2018-12-17)
How to cite UCSF ChimeraX
Traceback (most recent call last):
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/map/data/fileformats.py", line 133, in open_file
data = module.open(apath)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/map/data/imagestack/__init__.py", line 24, in open
grids = image_stack_grids(paths)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/map/data/imagestack/imagestack_grid.py", line 21, in
image_stack_grids
d = imagestack_format.Image_Stack_Data(paths)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/map/data/imagestack/imagestack_format.py", line 34, in
__init__
self.value_type = pillow_numpy_value_type(i.mode)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/map/data/imagestack/imagestack_format.py", line 148, in
pillow_numpy_value_type
raise SyntaxError('Image mode %s is not supported (%s)' % (image_mode,
mnames))
File "<string>", line None
SyntaxError: Image mode RGBA is not supported (L, P, I;16, I;16B, I;16L,
I;16S, F, F;32BF, I, RGB)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/ui/gui.py", line
553, in _qt_safe
session.models.open([p])
File "/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/core/models.py",
line 587, in open
session, filenames, format=format, name=name, **kw)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/core/io.py",
line 457, in open_multiple_data
models, status = open_func(session, paths, mname, **kw)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/map/volume.py",
line 3399, in open_map_format
return open_map(session, stream, name=name, format=format, **kw)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/map/volume.py",
line 3037, in open_map
grids = data.open_file(map_path, file_type = format)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/map/data/fileformats.py", line 139, in open_file
raise FileFormatError(value)
chimerax.map.data.fileformats.FileFormatError: Image mode RGBA is not
supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF, I, RGB)
chimerax.map.data.fileformats.FileFormatError: Image mode RGBA is not
supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF, I, RGB)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/map/data/fileformats.py", line 139, in open_file
raise FileFormatError(value)
See log for complete Python traceback.
Traceback (most recent call last):
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/map/data/fileformats.py", line 133, in open_file
data = module.open(apath)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/map/data/imagestack/__init__.py", line 24, in open
grids = image_stack_grids(paths)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/map/data/imagestack/imagestack_grid.py", line 21, in
image_stack_grids
d = imagestack_format.Image_Stack_Data(paths)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/map/data/imagestack/imagestack_format.py", line 34, in
__init__
self.value_type = pillow_numpy_value_type(i.mode)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/map/data/imagestack/imagestack_format.py", line 148, in
pillow_numpy_value_type
raise SyntaxError('Image mode %s is not supported (%s)' % (image_mode,
mnames))
File "<string>", line None
SyntaxError: Image mode RGBA is not supported (L, P, I;16, I;16B, I;16L,
I;16S, F, F;32BF, I, RGB)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/ui/gui.py", line
553, in _qt_safe
session.models.open([p])
File "/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/core/models.py",
line 587, in open
session, filenames, format=format, name=name, **kw)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/core/io.py",
line 457, in open_multiple_data
models, status = open_func(session, paths, mname, **kw)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/map/volume.py",
line 3399, in open_map_format
return open_map(session, stream, name=name, format=format, **kw)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/map/volume.py",
line 3037, in open_map
grids = data.open_file(map_path, file_type = format)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/map/data/fileformats.py", line 139, in open_file
raise FileFormatError(value)
chimerax.map.data.fileformats.FileFormatError: Image mode RGBA is not
supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF, I, RGB)
chimerax.map.data.fileformats.FileFormatError: Image mode RGBA is not
supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF, I, RGB)
File "/opt/UCSF/ChimeraX/lib/python3.6/site-
packages/chimerax/map/data/fileformats.py", line 139, in open_file
raise FileFormatError(value)
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 515.76
OpenGL renderer: Quadro P620/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → Tool Shed |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Load Toolshed cache: 'list' object has no attribute 'split' |
comment:2 by , 2 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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