| 1 | 2023-07-30 05:58:53,791 Running on GPU
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| 2 | 2023-07-30 05:58:53,879 Found 4 citations for tools or databases
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| 3 | 2023-07-30 05:58:53,879 Query 1/1: af1508 (length 1508)
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| 4 | 2023-07-30 05:58:54,251 Server didn't reply with json: mkdir /nvme2/colabfold_2022/jobs/rcu5mzGkEOWaTJUkCoHdqPWr8bW-LGOcFhYi6w: no space left on device
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| 5 |
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| 6 | 2023-07-30 05:58:54,259 Could not get MSA/templates for af1508: MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.
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| 7 | Traceback (most recent call last):
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| 8 | File "/usr/local/lib/python3.10/dist-packages/colabfold/batch.py", line 1360, in run
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| 9 | = get_msa_and_templates(jobname, query_sequence, result_dir, msa_mode, use_templates,
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| 10 | File "/usr/local/lib/python3.10/dist-packages/colabfold/batch.py", line 803, in get_msa_and_templates
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| 11 | a3m_lines = run_mmseqs2(
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| 12 | File "/usr/local/lib/python3.10/dist-packages/colabfold/colabfold.py", line 197, in run_mmseqs2
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| 13 | raise Exception(f'MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.')
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| 14 | Exception: MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.
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| 15 | 2023-07-30 05:58:54,261 Done
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| 16 | 2023-07-30 06:07:50,430 Starting prediction on 2023-07-30 UTC time
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| 17 | 2023-07-30 06:07:50,431 Installing ColabFold on Google Colab virtual machine.
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| 18 | 2023-07-30 06:07:50,651 Running on GPU
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| 19 | 2023-07-30 06:07:50,653 Found 4 citations for tools or databases
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| 20 | 2023-07-30 06:07:50,654 Query 1/1: af1508 (length 1508)
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| 21 | 2023-07-30 06:07:51,016 Server didn't reply with json: mkdir /nvme2/colabfold_2022/jobs/rcu5mzGkEOWaTJUkCoHdqPWr8bW-LGOcFhYi6w: no space left on device
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| 22 |
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| 23 | 2023-07-30 06:07:51,024 Could not get MSA/templates for af1508: MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.
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| 24 | Traceback (most recent call last):
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| 25 | File "/usr/local/lib/python3.10/dist-packages/colabfold/batch.py", line 1360, in run
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| 26 | = get_msa_and_templates(jobname, query_sequence, result_dir, msa_mode, use_templates,
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| 27 | File "/usr/local/lib/python3.10/dist-packages/colabfold/batch.py", line 803, in get_msa_and_templates
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| 28 | a3m_lines = run_mmseqs2(
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| 29 | File "/usr/local/lib/python3.10/dist-packages/colabfold/colabfold.py", line 197, in run_mmseqs2
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| 30 | raise Exception(f'MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.')
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| 31 | Exception: MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.
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| 32 | 2023-07-30 06:07:51,026 Done
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| 33 | 2023-07-30 06:11:20,861 Starting prediction on 2023-07-30 UTC time
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| 34 | 2023-07-30 06:11:20,861 Installing ColabFold on Google Colab virtual machine.
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| 35 | 2023-07-30 06:11:21,079 Running on GPU
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| 36 | 2023-07-30 06:11:21,082 Found 4 citations for tools or databases
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| 37 | 2023-07-30 06:11:21,082 Query 1/1: af1508 (length 1508)
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| 38 | 2023-07-30 06:11:21,443 Server didn't reply with json: mkdir /nvme2/colabfold_2022/jobs/rcu5mzGkEOWaTJUkCoHdqPWr8bW-LGOcFhYi6w: no space left on device
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| 39 |
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| 40 | 2023-07-30 06:11:21,450 Could not get MSA/templates for af1508: MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.
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| 41 | Traceback (most recent call last):
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| 42 | File "/usr/local/lib/python3.10/dist-packages/colabfold/batch.py", line 1360, in run
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| 43 | = get_msa_and_templates(jobname, query_sequence, result_dir, msa_mode, use_templates,
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| 44 | File "/usr/local/lib/python3.10/dist-packages/colabfold/batch.py", line 803, in get_msa_and_templates
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| 45 | a3m_lines = run_mmseqs2(
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| 46 | File "/usr/local/lib/python3.10/dist-packages/colabfold/colabfold.py", line 197, in run_mmseqs2
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| 47 | raise Exception(f'MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.')
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| 48 | Exception: MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.
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| 49 | 2023-07-30 06:11:21,452 Done
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| 50 | 2023-07-30 06:13:46,532 Starting prediction on 2023-07-30 UTC time
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| 51 | 2023-07-30 06:13:46,533 Installing ColabFold on Google Colab virtual machine.
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| 52 | 2023-07-30 06:16:24,523 Running on GPU
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| 53 | 2023-07-30 06:16:24,525 Found 4 citations for tools or databases
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| 54 | 2023-07-30 06:16:24,525 Query 1/1: af377 (length 377)
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| 55 | 2023-07-30 06:16:24,887 Server didn't reply with json: mkdir /nvme2/colabfold_2022/jobs/rcu5mzGkEOWaTJUkCoHdqPWr8bW-LGOcFhYi6w: no space left on device
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| 56 |
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| 57 | 2023-07-30 06:16:24,895 Could not get MSA/templates for af377: MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.
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| 58 | Traceback (most recent call last):
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| 59 | File "/usr/local/lib/python3.10/dist-packages/colabfold/batch.py", line 1360, in run
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| 60 | = get_msa_and_templates(jobname, query_sequence, result_dir, msa_mode, use_templates,
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| 61 | File "/usr/local/lib/python3.10/dist-packages/colabfold/batch.py", line 803, in get_msa_and_templates
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| 62 | a3m_lines = run_mmseqs2(
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| 63 | File "/usr/local/lib/python3.10/dist-packages/colabfold/colabfold.py", line 197, in run_mmseqs2
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| 64 | raise Exception(f'MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.')
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| 65 | Exception: MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.
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| 66 | 2023-07-30 06:16:24,896 Done
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| 67 | 2023-07-30 06:18:18,358 Starting prediction on 2023-07-30 UTC time
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| 68 | 2023-07-30 06:18:18,358 Installing ColabFold on Google Colab virtual machine.
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| 69 | 2023-07-30 06:18:18,577 Running on GPU
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| 70 | 2023-07-30 06:18:18,580 Found 4 citations for tools or databases
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| 71 | 2023-07-30 06:18:18,580 Query 1/1: af375 (length 375)
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| 72 | 2023-07-30 06:18:18,940 Server didn't reply with json: mkdir /nvme2/colabfold_2022/jobs/V7_OsR0cA3SJt3vfkv3DcABkDdWRxbVjR7VAdw: no space left on device
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| 73 |
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| 74 | 2023-07-30 06:18:18,949 Could not get MSA/templates for af375: MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.
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| 75 | Traceback (most recent call last):
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| 76 | File "/usr/local/lib/python3.10/dist-packages/colabfold/batch.py", line 1360, in run
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| 77 | = get_msa_and_templates(jobname, query_sequence, result_dir, msa_mode, use_templates,
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| 78 | File "/usr/local/lib/python3.10/dist-packages/colabfold/batch.py", line 803, in get_msa_and_templates
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| 79 | a3m_lines = run_mmseqs2(
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| 80 | File "/usr/local/lib/python3.10/dist-packages/colabfold/colabfold.py", line 197, in run_mmseqs2
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| 81 | raise Exception(f'MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.')
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| 82 | Exception: MMseqs2 API is giving errors. Please confirm your input is a valid protein sequence. If error persists, please try again an hour later.
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| 83 | 2023-07-30 06:18:18,950 Done
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