Opened 2 years ago

Closed 2 years ago

#9446 closed defect (fixed)

vseries play: oscillate ignores "loop false"

Reported by: Tristan Croll Owned by: Tom Goddard
Priority: normal Milestone:
Component: Volume Data Version:
Keywords: Cc: Elaine Meng, pett
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

The following bug report has been submitted:
Platform:        Windows-10-10.0.22621
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
For the `vseries play` command, when the direction is "oscillate" then "loop false" has no effect - it still continues playing forever.

Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  

> open "C:\\\Users\\\Tristan Croll\\\Downloads\\\eIF2B_FistBump_3DFlex.cxs"

Opened map series J28_series_001_frame_000.mrc as #1, 41 images, grid size
192,192,192, pixel 2.38, shown at level 0.0242, step 1, values float32  
Opened map series J28_series_000_frame_000.mrc as #2, 41 images, grid size
192,192,192, pixel 2.38, shown at level 0.0241, step 1, values float32  
Log from Fri Apr 14 11:57:11 2023UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  

> open /Users/dlee/Desktop/eIF2B_decamer_Praxis800.cxs format session

Opened cryosparc_P19_J55_005_volume_map.mrc as #1, grid size 512,512,512,
pixel 0.701, shown at level 0.0377, step 1, values float32  
Log from Tue Feb 7 14:17:10 2023UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/dlee/Downloads/cryosparc_P19_J55_005_volume_map.mrc

Opened cryosparc_P19_J55_005_volume_map.mrc as #1, grid size 512,512,512,
pixel 0.701, shown at level 0.0139, step 2, values float32  

> open /Users/dlee/Desktop/6ezo_ADJUSTED_PRX800.pdb

Chain information for 6ezo_ADJUSTED_PRX800.pdb #2  
---  
Chain | Description  
A B | No description available  
C | No description available  
D | No description available  
E F | No description available  
G | No description available  
H | No description available  
I | No description available  
J | No description available  
  

> show cartoons

> hide atoms

> volume #1 style mesh

> volume #1 step 1

> volume #1 level 0.02788

> select ::name="C7B"

54 atoms, 56 bonds, 1 residue, 1 model selected  

> style sel ball

Changed 54 atom styles  

> show sel atoms

> ui tool show "Color Actions"

> color sel red

> ui tool show "Side View"

> volume #1 style surface

> volume #1 style mesh

> ui tool show "Surface Zone"

> surface zone #1 nearAtoms #2 distance 4.21

> surface zone #1 nearAtoms sel distance 4.21

> surface zone #1 nearAtoms sel distance 6

[Repeated 2 time(s)]

> select /C:164

16 atoms, 15 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 16 atom styles  

> select #1

2 models selected  

> select #1

2 models selected  

> select /D:401@C11

1 atom, 1 residue, 1 model selected  

> select /D:401@C11

1 atom, 1 residue, 1 model selected  

> select ::name="C7B"

54 atoms, 56 bonds, 1 residue, 1 model selected  

> select /C:162

14 atoms, 13 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 14 atom styles  

> volume #1 level 0.03774

> select /C:228

24 atoms, 23 bonds, 1 residue, 1 model selected  

> style sel stick

Changed 24 atom styles  

> show sel atoms

> select /D:162

14 atoms, 13 bonds, 1 residue, 1 model selected  

> show sel cartoons

> show sel atoms

> style sel stick

Changed 14 atom styles  

> select /D:164

16 atoms, 15 bonds, 1 residue, 1 model selected  

> style sel stick

Changed 16 atom styles  

> show sel atoms

> select /D:259

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /D:228

24 atoms, 23 bonds, 1 residue, 1 model selected  

> show sel cartoons

> show sel atoms

> style sel stick

Changed 24 atom styles  

> select /D:229

16 atoms, 15 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 16 atom styles  

> select /D:163

7 atoms, 6 bonds, 1 residue, 1 model selected  

> style sel stick

Changed 7 atom styles  

> show sel atoms

> select /D:230

7 atoms, 6 bonds, 1 residue, 1 model selected  

> show sel atoms

> show sel cartoons

> style sel stick

Changed 7 atom styles  

> select /D:188

17 atoms, 17 bonds, 1 residue, 1 model selected  

> style sel stick

Changed 17 atom styles  

> show sel atoms

> select #1

2 models selected  

> select clear

> select /H:178

11 atoms, 10 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 11 atom styles  

> select /D:189

16 atoms, 15 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 16 atom styles  

> select /D:214

14 atoms, 13 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 14 atom styles  

> select /D:215

14 atoms, 13 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 14 atom styles  

> select /D:225

16 atoms, 15 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 16 atom styles  

> select /H:452

20 atoms, 20 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 20 atom styles  

> select #1

2 models selected  

> select #1

2 models selected  

> select clear

> select /C:230

14 atoms, 13 bonds, 1 residue, 1 model selected  

> style sel stick

Changed 14 atom styles  

> show sel atoms

> select #1

2 models selected  

> select #1

2 models selected  

> select /C:225

16 atoms, 15 bonds, 1 residue, 1 model selected  

> style sel stick

Changed 16 atom styles  

> show sel cartoons

> show sel atoms

> select #1

2 models selected  

> select /C:189

16 atoms, 15 bonds, 1 residue, 1 model selected  

> show sel atoms

> hide sel atoms

> select /C:190

19 atoms, 18 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 19 atom styles  

> select /C:188

17 atoms, 17 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 17 atom styles  

> select /G:362

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /G:177

16 atoms, 15 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 16 atom styles  

> select /G:423

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /C:225

16 atoms, 15 bonds, 1 residue, 1 model selected  

> select /C:224

10 atoms, 9 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 10 atom styles  

> select /C:215

14 atoms, 13 bonds, 1 residue, 1 model selected  

> show sel atoms

> style sel stick

Changed 14 atom styles  

> select /C:230

14 atoms, 13 bonds, 1 residue, 1 model selected  

> select /C:229

16 atoms, 15 bonds, 1 residue, 1 model selected  

> style sel stick

Changed 16 atom styles  

> show sel atoms

> select clear

> save /Users/dlee/Desktop/eIF2B_decamer_Praxis800.cxs includeMaps true

——— End of log from Tue Feb 7 14:17:10 2023 ———

opened ChimeraX session  

> hide #!1 models

> view matrix models #2,1,0,0,-9.0347,0,1,0,-6.9485,0,0,1,1.0858

> show #!1 models

> volume #1 style surface

> ui tool show "Surface Zone"

> surface unzone #1

> volume #1 level 0.02177

> close session

> open /Users/dlee/Downloads/cryosparc_P58_J28_series_001/*.mrc vseries true

Opened map series J28_series_001_frame_000.mrc as #1, 41 images, grid size
192,192,192, pixel 2.38, shown at level 1.03e-05, step 1, values float32  

> open /Users/dlee/Downloads/cryosparc_P58_J28_series_000/*.mrc vseries true

Opened map series J28_series_000_frame_000.mrc as #2, 41 images, grid size
192,192,192, pixel 2.38, shown at level 2.31e-07, step 1, values float32  

> volume #1.1 level 0.02415

> volume #2.1 level 0.02409

> hide #!1 models

> show #!1 models

> hide #!2 models

> show #!2 models

> save /Users/dlee/Desktop/eIF2B_FistBump_3DFlex.cxs includeMaps true

——— End of log from Fri Apr 14 11:57:11 2023 ———

opened ChimeraX session  

> lighting soft

> hide #!2 models

> show #!2 models

> set bgColor white

> color brown

> color lightbrown

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color lightseagreen

> hide #!2 models

> usage animate

"animate" is not a command name  

> usage map

"map" is not a command name  

> usage vol

volume [volumes] [style style] [change change] [show] [hide] [toggle] [close
close] [level level] [rmsLevel rmsLevel] [sdLevel sdLevel] [encloseVolume
encloseVolume] [fastEncloseVolume fastEncloseVolume] [color color] [brightness
a number] [transparency a number] [appearance appearance] [nameAppearance a
text string] [nameForget nameForget] [step map step] [region map region]
[expandSinglePlane true or false] [origin 1 or 3 floats] [originIndex 1 or 3
floats] [voxelSize 1 or 3 floats] [planes planes
x|y|z[,<start>[,<end>[,<increment>[,<depth>]]]]] [dumpHeader true or false]
[pickable true or false] [symmetry symmetry] [center center point]
[centerIndex 1 or 3 floats] [axis an axis vector] [coordinateSystem a
coordinate-system] [dataCacheSize a number] [showOnOpen true or false]
[voxelLimitForOpen a number] [showPlane true or false] [voxelLimitForPlane a
number] [showOutlineBox true or false] [outlineBoxRgb a color]
[limitVoxelCount true or false] [voxelLimit a number] [colorMode colorMode]
[colormapOnGpu true or false] [colormapSize an integer] [colormapExtendLeft
true or false] [colormapExtendRight true or false] [backingColor backingColor]
[blendOnGpu true or false] [projectionMode projectionMode] [planeSpacing
planeSpacing] [fullRegionOnGpu true or false] [btCorrection true or false]
[minimalTextureMemory true or false] [maximumIntensityProjection true or
false] [linearInterpolation true or false] [dimTransparency true or false]
[dimTransparentVoxels true or false] [smoothLines true or false] [meshLighting
true or false] [twoSidedLighting true or false] [flipNormals true or false]
[subdivideSurface true or false] [subdivisionLevels an integer]
[surfaceSmoothing true or false] [smoothingIterations an integer]
[smoothingFactor a number] [squareMesh true or false] [capFaces true or false]
[boxFaces true or false] [orthoplanes orthoplanes] [positionPlanes
positionPlanes] [tiltedSlab true or false] [tiltedSlabAxis an axis vector]
[tiltedSlabOffset a number] [tiltedSlabSpacing a number] [tiltedSlabPlaneCount
an integer] [imageMode imageMode] [calculateSurfaces true or false]  
— set volume model parameters, display style and colors  
style: one of image, mesh, solid, or surface  
change: one of image or surface  
close: one of image or surface  
level: some numbers, repeatable  
rmsLevel: some numbers, repeatable  
sdLevel: some numbers, repeatable  
encloseVolume: some numbers  
fastEncloseVolume: some numbers  
color: a color, repeatable  
appearance: one of Airways, airways, Airways II, Black & White, Bone + Skin,
Bone + Skin II, brain, chest, CT_Bones, CT_Kidneys, CT_Liver, CT_Lungs,
CT_Muscles, CT_Skin, CT_Soft_Tissue, CT_Vessels, CT_w_Contrast, Dark Bone,
Glossy, Glossy II, Gold Bone, High Contrast, initial, Low Contrast, Mid
Contrast, No Shading, Pencil, Red on White, Skin On Blue, Skin On Blue II,
Soft, Soft + Skin, Soft + Skin II, Soft + Skin III, Soft On Blue, Soft on
White, Standard, Vascular, Vascular II, Vascular III, Vascular IV, or Yellow
Bone  
nameForget: one of Airways, airways, Airways II, Black & White, Bone + Skin,
Bone + Skin II, brain, chest, CT_Bones, CT_Kidneys, CT_Liver, CT_Lungs,
CT_Muscles, CT_Skin, CT_Soft_Tissue, CT_Vessels, CT_w_Contrast, Dark Bone,
Glossy, Glossy II, Gold Bone, High Contrast, initial, Low Contrast, Mid
Contrast, No Shading, Pencil, Red on White, Skin On Blue, Skin On Blue II,
Soft, Soft + Skin, Soft + Skin II, Soft + Skin III, Soft On Blue, Soft on
White, Standard, Vascular, Vascular II, Vascular III, Vascular IV, or Yellow
Bone  
colorMode: one of auto12, auto16, auto4, auto8, l12, l16, l4, l8, la12, la16,
la4, la8, opaque12, opaque16, opaque4, opaque8, rgb12, rgb16, rgb4, rgb8,
rgba12, rgba16, rgba4, or rgba8  
backingColor: a color or none  
projectionMode: one of 2d-x, 2d-xyz, 2d-y, 2d-z, 3d, or auto  
planeSpacing: one of max, mean, or min or a number  
orthoplanes: one of off, xy, xyz, xz, or yz  
positionPlanes: some integers  
imageMode: one of box faces, full region, orthoplanes, or tilted slab  
Subcommands are:

  * volume add
  * volume bin
  * volume boxes
  * volume channels
  * volume copy
  * volume cover
  * volume erase
  * volume falloff
  * volume flatten
  * volume flip
  * volume fourier
  * volume gaussian
  * volume laplacian
  * volume localCorrelation
  * volume mask
  * volume maximum
  * volume median
  * volume minimum
  * volume morph
  * volume multiply
  * volume new
  * volume octant
  * volume ~octant
  * volume onesmask
  * volume permuteAxes
  * volume resample
  * volume ridges
  * volume scale
  * volume settings
  * volume splitbyzone
  * volume subtract
  * volume threshold
  * volume tile
  * volume unbend
  * volume unroll
  * volume unzone
  * volume zone

  

> help help:user

> usage open format volume

Missing or invalid "format" argument: Should be one of 'aln', 'amber',
'amira', 'apbs', 'bild', 'brix', 'ccd', 'ccp4', 'cellpack', 'clustal', 'cmap',
'cmd', 'cod', 'collada', 'com', 'compiled python', 'coords', 'corecif',
'cube', 'dat', 'dcd', 'defattr', 'delphi', 'dicom', 'dock', 'dsn6', 'dv',
'dynamo', 'emanhdf', 'fasta', 'fchk', 'fsc', 'generic_particles', 'geomodel',
'gltf', 'gopenmol', 'gro', 'hdf', 'hssp', 'html', 'ihm', 'images', 'imagic',
'imod', 'imodmap', 'ims', 'log', 'macmolplt', 'markers', 'mmcif', 'mmtf',
'model2point', 'mol2', 'mole', 'motivelist', 'motl', 'mrc', 'msf', 'mtz',
'nbo31', 'nbo47', 'netcdfmap', 'nifti', 'nrrd', 'obj', 'out', 'pcod', 'pdb',
'pdbqt', 'peet', 'pfam', 'photo', 'pif', 'pir', 'positions', 'priism',
'profec', 'pseudobonds', 'psf', 'python', 'qout', 'relion', 'rmf', 'rsf',
'schrodinger maestro', 'sdf', 'segger', 'session', 'sff', 'situs', 'smallcif',
'smiles', 'spider', 'sqmout', 'star', 'stl', 'stockholm', 'storm', 'swc',
'swissdock', 'tbl', 'tom_em', 'trr', 'uhbd', 'uniprot', 'viperdb', 'vtk', 'web
fetch', 'xplor', 'xtc', 'xyz', or 'zdock'  

> usage open format mrc

open names [arrayName a text string] [channel an integer] [verbose true or
false] [vseries true or false]  
— read and display data  
names: file names to open; a name of 'browse' will bring up a file browser  

> help open format mrc

> usage vseries

Subcommands are:

  * vseries align
  * vseries measure
  * vseries play
  * vseries save
  * vseries slider
  * vseries stop

  

>

Unknown command: vseries #1 oscillate t loop f  

> vseries play #1 oscillate t loop f

Expected a keyword  

> vseries play #1 direction oscillate loop false

> vseries stop

Missing or invalid "series" argument: empty atom specifier  

> usage vseries

Subcommands are:

  * vseries align
  * vseries measure
  * vseries play
  * vseries save
  * vseries slider
  * vseries stop

  

> vseries stop #1

> usage vseries play

vseries play series [loop true or false] [direction direction] [normalize true
or false] [maxFrameRate a number] [pauseFrames an integer] [markers an atoms
specifier] [precedingMarkerFrames an integer] [followingMarkerFrames an
integer] [colorRange a number] [cacheFrames an integer] [jumpTo an integer]
[range integer range] [startTime an integer]  
— Draw each map in a series in order  
direction: one of backward, forward, or oscillate  

> vseries play #1 direction forward loop false

> vseries play #1 direction oscillate loop false

> vseries stop #1




OpenGL version: 3.3.0 NVIDIA 518.01
OpenGL renderer: NVIDIA GeForce RTX 3070 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_GB.cp1252
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: windows

Manufacturer: HP
Model: HP ZBook Studio 15.6 inch G8 Mobile Workstation PC
OS: Microsoft Windows 11 Pro (Build 22621)
Memory: 34,007,068,672
MaxProcessMemory: 137,438,953,344
CPU: 16 11th Gen Intel(R) Core(TM) i7-11800H @ 2.30GHz
OSLanguage: en-GB

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2023.5.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.21.0
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.6.0
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-QScore: 1.0
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    comtypes: 1.1.14
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    nvidia-cuda-nvrtc-cu11: 11.8.89
    openvr: 1.23.701
    packaging: 23.1
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pywin32: 305
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    rdkit: 2022.9.5
    requests: 2.28.2
    scipy: 1.9.3
    Send2Trash: 1.8.2
    SEQCROW: 1.7.3
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    WMI: 1.5.1
    zipp: 3.15.0

Change History (5)

comment:1 by pett, 2 years ago

Cc: Tom Goddard Elaine Meng added
Component: UnassignedVolume Data
Owner: set to pett
Platform: all
Project: ChimeraX
Status: newaccepted
Summary: ChimeraX bug report submissionvseries play: oscillate ignores "loop false"

comment:2 by Tom Goddard, 2 years ago

Resolution: fixed
Status: acceptedclosed

Fixed.

In oscillate mode vseries play kept looping even with the default loop false. If it loop is false I made it stop looping when it gets to the start of the series.

comment:3 by Tom Goddard, 2 years ago

Resolution: fixed
Status: closedreopened

comment:4 by Tom Goddard, 2 years ago

Cc: pett added; Tom Goddard removed
Owner: changed from pett to Tom Goddard
Status: reopenedassigned

comment:5 by Tom Goddard, 2 years ago

Resolution: fixed
Status: assignedclosed
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