Phenix

Emplace Local Improvements

• Allow using full maps instead of half maps
• Have tool remember setting from current session; Apply button
• Removed code that compensated for non-zero map origins
• Made showing sharpened map optional
• "Center of selection" search-center mode

No progress on fit_loops

Attended Phenix-Fraser meeting

ChimeraX completed

• Updated programming tutorial to mention UI convenience classes
  • Data lists/menus (*e.g.* StructureList)
  • Remember-able options (*e.g.* FontOption)
  • Python-data tables
• Allow specifying chain association along with UniProt fetch
• Can now invert selection just in models with selections (+ arrow key support)
• IUPAC fetch
• Context-menu entry to focus on residue in sequence viewer
• Use Trac search of mailing-list archives instead of Google search
• Make name column in Model Panel wider when names are long, and show tooltip for long names
• Use C4' for sequence RMSD when appropriate
• Allow setting all alt locs at once in Altloc Explorer
• Suppressed asking for format when open .cif files
• Improve variability of model colors past builtin set
• Added looping control to playback slider