mouse wheel-based zoom is not working

[ah-ram_kim@…]

The following bug report has been submitted:
Platform:        macOS-13.4.1-arm64-arm-64bit
ChimeraX Version: 1.7.dev202306282227 (2023-06-28 22:27:03 UTC)
Description
While using chimeraX, mouse wheel-based zoon in/out is not working at some point. I tried 1.6, 1.5, and daily version, all of which has the same bug. I am not sure whether it is particularly happening for my computer. 

Log:
UCSF ChimeraX version: 1.7.dev202306282227 (2023-06-28)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open "/Users/ahramkim/Library/CloudStorage/Dropbox/EB-AR/AR/Image Lab (Bio-
> RaD)/Alphafold/20230626_kinase_MAPK_mutation/mutation_pdb/ksr/FBgn0015402___FBgn0003079_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb"

Chain information for
FBgn0015402___FBgn0003079_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb
#1  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open "/Users/ahramkim/Library/CloudStorage/Dropbox/EB-AR/AR/Image Lab (Bio-
> RaD)/Alphafold/20230626_kinase_MAPK_mutation/mutation_pdb/ksr/FBgn0015402___FBgn0003079_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb"

Chain information for
FBgn0015402___FBgn0003079_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb
#2  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open "/Users/ahramkim/Library/CloudStorage/Dropbox/EB-AR/AR/Image Lab (Bio-
> RaD)/Alphafold/20230626_kinase_MAPK_mutation/mutation_pdb/ksr/FBgn0015402___FBgn0003079_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_000.pdb"

Chain information for
FBgn0015402___FBgn0003079_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_000.pdb
#3  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> matchmaker #3 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0003079_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#1) with
FBgn0015402___FBgn0003079_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_000.pdb,
chain A (#3), sequence alignment score = 4867.3  
RMSD between 170 pruned atom pairs is 0.545 angstroms; (across all 966 pairs:
72.189)  
  

> matchmaker #2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0003079_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#1) with
FBgn0015402___FBgn0003079_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#2), sequence alignment score = 4869.7  
RMSD between 124 pruned atom pairs is 1.283 angstroms; (across all 966 pairs:
57.472)  
  

> preset "overall look" "publication 1 (silhouettes)"

Using preset: Overall Look / Publication 1 (Silhouettes)  
Preset expands to these ChimeraX commands:

    
    
    set bg white
    graphics silhouettes t
    lighting depthCue f

  

> color bychain

> hide #2 models

> hide #3 models

> show #3 models

> hide #3 models

> show #3 models

> hide #3 models

> show #2 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> hide #2 models

> show #2 models

> hide #2 models

> show #3 models

> hide #3 models

> show #3 models

> matchmaker #2 to #1/A

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0003079_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#1) with
FBgn0015402___FBgn0003079_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#2), sequence alignment score = 4869.7  
RMSD between 124 pruned atom pairs is 1.283 angstroms; (across all 966 pairs:
57.472)  
  

> matchmaker #3 to #1/A

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0003079_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#1) with
FBgn0015402___FBgn0003079_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_000.pdb,
chain A (#3), sequence alignment score = 4867.3  
RMSD between 170 pruned atom pairs is 0.545 angstroms; (across all 966 pairs:
72.189)  
  

> show #2 models

> show #1 models

> hide #1 models

> hide #2 models

> hide #3 models

> show #1 models

> hide #1 models

> show #2 models

> hide #2 models

> show #1 models

> hide #1 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #3 models

> hide #3 models

> show #3 models

> hide #3 models

> show #2 models

> show #1 models

> show #3 models

> hide #3 models

> show #3 models

> hide #3 models

> hide #2 models

> hide #1 models

> show #1 models

> show #2 models

> hide #1 models

> hide #2 models

> matchmaker #3 to #1/A:600-end

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0003079_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#1) with
FBgn0015402___FBgn0003079_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_000.pdb,
chain A (#3), sequence alignment score = 1879.1  
RMSD between 281 pruned atom pairs is 0.475 angstroms; (across all 367 pairs:
25.293)  
  

> matchmaker #2 to #1/A:600-end

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0003079_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#1) with
FBgn0015402___FBgn0003079_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#2), sequence alignment score = 1869.5  
RMSD between 273 pruned atom pairs is 0.564 angstroms; (across all 367 pairs:
13.849)  
  

> show #1 models

> show #2 models

> show #3 models

> hide #2 models

> hide #3 models

> rainbow #1

> show #2 models

> show #3 models

> hide #3 models

> hide #2 models

> color #1 bychain

> select #/A:15, 16, 17, 18, 19, 20, 24, 31, 32, 35, 36, 38, 39, 41, 42, 43,
> 44, 45, 46, 47, 48, 49, 50, 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75,
> 665, 668, 671, 672, 684, 685, 686, 687, 688, 689, 692, 693, 698, 699, 700,
> 701, 702, 726, 727, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740,
> 741, 753, 754, 755, 757, 758, 759, 760, 762, 763, 767, 770, 771, 772, 773,
> 775, 776, 782, 783, 272, 273, 274, 275, 276, 277, 785, 786, 787, 788, 789,
> 790, 791, 793, 794, 804, 809, 810, 811, 812, 825, 826, 827, 828, 829, 830,
> 831, 832, 833, 834, 835, 836, 837, 838, 839, 852, 853, 854, 361, 362, 363,
> 364, 365, 366, 367, 368, 369, 370, 371, 373, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 399, 400, 412, 413, 414,
> 415, 416, 933, 934, 424, 937, 427, 428, 431, 945, 946, 947, 436, 948, 949,
> 950, 951

Expected an objects specifier or a keyword  

> select #1/A:15, 16, 17, 18, 19, 20, 24, 31, 32, 35, 36, 38, 39, 41, 42, 43,
> 44, 45, 46, 47, 48, 49, 50, 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75,
> 665, 668, 671, 672, 684, 685, 686, 687, 688, 689, 692, 693, 698, 699, 700,
> 701, 702, 726, 727, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740,
> 741, 753, 754, 755, 757, 758, 759, 760, 762, 763, 767, 770, 771, 772, 773,
> 775, 776, 782, 783, 272, 273, 274, 275, 276, 277, 785, 786, 787, 788, 789,
> 790, 791, 793, 794, 804, 809, 810, 811, 812, 825, 826, 827, 828, 829, 830,
> 831, 832, 833, 834, 835, 836, 837, 838, 839, 852, 853, 854, 361, 362, 363,
> 364, 365, 366, 367, 368, 369, 370, 371, 373, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 399, 400, 412, 413, 414,
> 415, 416, 933, 934, 424, 937, 427, 428, 431, 945, 946, 947, 436, 948, 949,
> 950, 951

1352 atoms, 1337 bonds, 172 residues, 1 model selected  

> color sel red

> show #2 models

> show #3 models

> hide #3 models

> hide #2 models

> hide #1 models

> select A:15, 16, 17, 18, 19, 20, 24, 31, 32, 35, 36, 38, 39, 41, 42, 43, 44,
> 45, 46, 47, 48, 49, 50, 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 665,
> 668, 671, 672, 684, 685, 686, 687, 688, 689, 692, 693, 698, 699, 700, 701,
> 702, 726, 727, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741,
> 753, 754, 755, 757, 758, 759, 760, 762, 763, 767, 770, 771, 772, 773, 775,
> 776, 782, 783, 272, 273, 274, 275, 276, 277, 785, 786, 787, 788, 789, 790,
> 791, 793, 794, 804, 809, 810, 811, 812, 825, 826, 827, 828, 829, 830, 831,
> 832, 833, 834, 835, 836, 837, 838, 839, 852, 853, 854, 361, 362, 363, 364,
> 365, 366, 367, 368, 369, 370, 371, 373, 886, 887, 888, 889, 890, 891, 892,
> 893, 894, 895, 896, 897, 898, 899, 900, 902, 399, 400, 412, 413, 414, 415,
> 416, 933, 934, 424, 937, 427, 428, 431, 945, 946, 947, 436, 948, 949, 950,
> 951

Expected an objects specifier or a keyword  

> select #2/A:15, 16, 17, 18, 19, 20, 24, 31, 32, 35, 36, 38, 39, 41, 42, 43,
> 44, 45, 46, 47, 48, 49, 50, 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75,
> 665, 668, 671, 672, 684, 685, 686, 687, 688, 689, 692, 693, 698, 699, 700,
> 701, 702, 726, 727, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740,
> 741, 753, 754, 755, 757, 758, 759, 760, 762, 763, 767, 770, 771, 772, 773,
> 775, 776, 782, 783, 272, 273, 274, 275, 276, 277, 785, 786, 787, 788, 789,
> 790, 791, 793, 794, 804, 809, 810, 811, 812, 825, 826, 827, 828, 829, 830,
> 831, 832, 833, 834, 835, 836, 837, 838, 839, 852, 853, 854, 361, 362, 363,
> 364, 365, 366, 367, 368, 369, 370, 371, 373, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 399, 400, 412, 413, 414,
> 415, 416, 933, 934, 424, 937, 427, 428, 431, 945, 946, 947, 436, 948, 949,
> 950, 951

1352 atoms, 1337 bonds, 172 residues, 1 model selected  

> select #3/A:15, 16, 17, 18, 19, 20, 24, 31, 32, 35, 36, 38, 39, 41, 42, 43,
> 44, 45, 46, 47, 48, 49, 50, 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75,
> 665, 668, 671, 672, 684, 685, 686, 687, 688, 689, 692, 693, 698, 699, 700,
> 701, 702, 726, 727, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740,
> 741, 753, 754, 755, 757, 758, 759, 760, 762, 763, 767, 770, 771, 772, 773,
> 775, 776, 782, 783, 272, 273, 274, 275, 276, 277, 785, 786, 787, 788, 789,
> 790, 791, 793, 794, 804, 809, 810, 811, 812, 825, 826, 827, 828, 829, 830,
> 831, 832, 833, 834, 835, 836, 837, 838, 839, 852, 853, 854, 361, 362, 363,
> 364, 365, 366, 367, 368, 369, 370, 371, 373, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 399, 400, 412, 413, 414,
> 415, 416, 933, 934, 424, 937, 427, 428, 431, 945, 946, 947, 436, 948, 949,
> 950, 951

1352 atoms, 1337 bonds, 172 residues, 1 model selected  

> show #1 models

> show #2 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #2 models

> select #1/A:15, 16, 17, 18, 19, 20, 24, 31, 32, 35, 36, 38, 39, 41, 42, 43,
> 44, 45, 46, 47, 48, 49, 50, 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75,
> 272, 273, 274, 275, 276, 277, 361, 362, 363, 364, 365, 366, 367, 368, 369,
> 370, 371, 373, 399, 400, 412, 413, 414, 415, 416, 424, 427, 428, 431, 436,
> 665, 668, 671, 672, 684, 685, 686, 687, 688, 689, 692, 693, 698, 699, 700,
> 701, 702, 726, 727, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740,
> 741, 753, 754, 755, 757, 758, 759, 760, 762, 763, 767, 770, 771, 772, 773,
> 775, 776, 782, 783, 785, 786, 787, 788, 789, 790, 791, 793, 794, 804, 809,
> 810, 811, 812, 825, 826, 827, 828, 829, 830, 831, 832, 833, 834, 835, 836,
> 837, 838, 839, 852, 853, 854, 886, 887, 888, 889, 890, 891, 892, 893, 894,
> 895, 896, 897, 898, 899, 900, 902, 933, 934, 937, 945, 946, 947, 948, 949,
> 950, 951

1352 atoms, 1337 bonds, 172 residues, 1 model selected  

> select #1/B: 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35,
> 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55,
> 56, 57, 60, 62, 66, 127, 128, 129, 130, 131, 224, 226, 228, 229, 230, 231,
> 232, 233, 234, 235, 237, 238, 239, 240, 241, 250, 251, 252, 253, 254, 264,
> 265, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 280, 281,
> 417, 418, 419, 420, 421, 422, 448, 449, 450, 451, 452, 478, 479, 480, 481,
> 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533, 534, 535, 536,
> 537, 538, 539, 541, 542, 558, 559, 680, 683, 703, 705, 706, 707, 708, 709,
> 710, 711, 712, 713, 714, 715, 716, 717, 718, 719, 720, 721, 728, 730, 733,
> 734, 735, 736, 737, 738

1203 atoms, 1208 bonds, 146 residues, 1 model selected  

> color sel green

> select add #1

13330 atoms, 13623 bonds, 1705 residues, 1 model selected  

> select subtract #1

Nothing selected  

> select add #1

13330 atoms, 13623 bonds, 1705 residues, 1 model selected  

> color sel bychain

> select #1/A:274, 275, 364, 365, 366, 367, 686, 831, 832, 833, 834, 836, 890,
> 892, 893, 896, 948

114 atoms, 109 bonds, 17 residues, 1 model selected  

> hide #1 models

> show #3 models

> select #3/A:274, 275, 364, 365, 366, 367, 686, 831, 832, 833, 834, 836, 890,
> 892, 893, 896, 948

114 atoms, 109 bonds, 17 residues, 1 model selected  

> select #3/A:274, 275, 364, 365, 366, 367, 686, 831, 832, 833, 834, 836, 890,
> 892, 893, 896, 948, #3/B:43, 45, 46, 47, 48, 129, 130, 232, 233, 270, 271,
> 272, 273, 710, 715, 717, 718, 719, 720

Expected an objects specifier or a keyword  

> select #3/A:274, 275, 364, 365, 366, 367, 686, 831, 832, 833, 834, 836, 890,
> 892, 893, 896, 948 #3/B:43, 45, 46, 47, 48, 129, 130, 232, 233, 270, 271,
> 272, 273, 710, 715, 717, 718, 719, 720

261 atoms, 255 bonds, 36 residues, 1 model selected  

> color sel red

> select #3/A: 15, 16, 17, 18, 19, 20, 24, 31, 32, 35, 36, 38, 39, 41, 42, 43,
> 44, 45, 46, 47, 48, 49, 50, 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75,
> 272, 273, 274, 275, 276, 277, 361, 362, 363, 364, 365, 366, 367, 368, 369,
> 370, 371, 373, 399, 400, 412, 413, 414, 415, 416, 424, 427, 428, 431, 436,
> 665, 668, 671, 672, 684, 685, 686, 687, 688, 689, 692, 693, 698, 699, 700,
> 701, 702, 726, 727, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740,
> 741, 753, 754, 755, 757, 758, 759, 760, 762, 763, 767, 770, 771, 772, 773,
> 775, 776, 782, 783, 785, 786, 787, 788, 789, 790, 791, 793, 794, 804, 809,
> 810, 811, 812, 825, 826, 827, 828, 829, 830, 831, 832, 833, 834, 835, 836,
> 837, 838, 839, 852, 853, 854, 886, 887, 888, 889, 890, 891, 892, 893, 894,
> 895, 896, 897, 898, 899, 900, 902, 933, 934, 937, 945, 946, 947, 948, 949,
> 950, 951 #3/B: 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34,
> 35, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54,
> 55, 56, 57, 60, 62, 66, 127, 128, 129, 130, 131, 224, 226, 228, 229, 230,
> 231, 232, 233, 234, 235, 237, 238, 239, 240, 241, 250, 251, 252, 253, 254,
> 264, 265, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 280,
> 281, 417, 418, 419, 420, 421, 422, 448, 449, 450, 451, 452, 478, 479, 480,
> 481, 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533, 534, 535,
> 536, 537, 538, 539, 541, 542, 558, 559, 680, 683, 703, 705, 706, 707, 708,
> 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719, 720, 721, 728, 730,
> 733, 734, 735, 736, 737, 738

2550 atoms, 2540 bonds, 318 residues, 1 model selected  

> color sel red

> color sel rainbow

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color bfactor sel

2550 atoms, 318 residues, atom bfactor range 14.3 to 98.2  

> undo

> color bfactor sel

2550 atoms, 318 residues, atom bfactor range 14.3 to 98.2  

> select #3/A: 42, 46, 49, 50, 53, 54, 55, 273, 274, 275, 276, 362, 363, 364,
> 365, 366, 367, 368, 400, 414, 671, 685, 686, 687, 699, 700, 730, 732, 733,
> 739, 740, 754, 786, 789, 790, 810, 831, 832, 833, 834, 835, 836, 837, 853,
> 889, 890, 891, 892, 893, 894, 895, 896, 897, 947, 948, 949, 950 #3/B: 23,
> 26, 27, 30, 34, 37, 38, 39, 42, 43, 44, 45, 46, 47, 48, 49, 53, 128, 129,
> 130, 131, 231, 232, 233, 240, 252, 269, 270, 271, 272, 273, 274, 280, 420,
> 449, 450, 479, 481, 482, 483, 489, 534, 537, 538, 559, 707, 710, 712, 713,
> 714, 715, 716, 717, 718, 719, 720

886 atoms, 869 bonds, 113 residues, 1 model selected  

> color sel red

> color sel bychain

> select add #3

13307 atoms, 13600 bonds, 1705 residues, 1 model selected  

> color sel bychain

> select #3/A: 42, 46, 49, 50, 53, 54, 55, 273, 274, 275, 276, 362, 363, 364,
> 365, 366, 367, 368, 400, 414, 671, 685, 686, 687, 699, 700, 730, 732, 733,
> 739, 740, 754, 786, 789, 790, 810, 831, 832, 833, 834, 835, 836, 837, 853,
> 889, 890, 891, 892, 893, 894, 895, 896, 897, 947, 948, 949, 950 #3/B: 23,
> 26, 27, 30, 34, 37, 38, 39, 42, 43, 44, 45, 46, 47, 48, 49, 53, 128, 129,
> 130, 131, 231, 232, 233, 240, 252, 269, 270, 271, 272, 273, 274, 280, 420,
> 449, 450, 479, 481, 482, 483, 489, 534, 537, 538, 559, 707, 710, 712, 713,
> 714, 715, 716, 717, 718, 719, 720

886 atoms, 869 bonds, 113 residues, 1 model selected  

> color sel red

> select #3/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #3/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1348 atoms, 1322 bonds, 173 residues, 1 model selected  

> color sel red

> hide #3 models

> show #1 models

> select #3/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #3/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1348 atoms, 1322 bonds, 173 residues, 1 model selected  

> color sel red

> select #1A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #1B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46, 47,
> 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

Expected an objects specifier or a keyword  

> color sel red

> select #2A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #2B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46, 47,
> 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

Expected an objects specifier or a keyword  

> color sel red

> select #3A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #3B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46, 47,
> 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

Expected an objects specifier or a keyword  

> color sel red

> select #1/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #1/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1351 atoms, 1325 bonds, 173 residues, 1 model selected  

> color sel red

> select #2/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #2/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1347 atoms, 1321 bonds, 173 residues, 1 model selected  

> color sel green

> select #3/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #3/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1348 atoms, 1322 bonds, 173 residues, 1 model selected  

> color sel cyan

> hide #1 models

> show #3 models

> show #2 models

> hide #3 models

> select add #3

13307 atoms, 13600 bonds, 1705 residues, 1 model selected  

> select subtract #3

Nothing selected  

> select add #3

13307 atoms, 13600 bonds, 1705 residues, 1 model selected  

> select subtract #3

Nothing selected  

> select #1/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #1/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1351 atoms, 1325 bonds, 173 residues, 1 model selected  

> color sel red

> select #2/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #2/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1347 atoms, 1321 bonds, 173 residues, 1 model selected  

> color sel green

> select #3/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #3/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1348 atoms, 1322 bonds, 173 residues, 1 model selected  

> color sel cyan

> select subtract #3

Nothing selected  

> hide #2 models

> show #3 models

> show #2 models

> hide #2 models

> hide #3 models

> select #3/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #3/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1348 atoms, 1322 bonds, 173 residues, 1 model selected  

> color sel b-factor

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color sel bfactor

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> show #3 models

> color sel by bfactor

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color bfactor

39931 atoms, 5115 residues, atom bfactor range 11.3 to 98.4  

> undo

> color sel by bfactor

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color byattribute bfactor sel

1348 atoms, 173 residues, atom bfactor range 14.3 to 97.2  

> show #1 models

> show #2 models

> color sel bypolymer

> undo

> select add #2

14642 atoms, 14909 bonds, 1878 residues, 2 models selected  

> select add #1

27972 atoms, 28532 bonds, 3583 residues, 3 models selected  

> select add #3

39931 atoms, 40810 bonds, 5115 residues, 3 models selected  

> select subtract #3

26624 atoms, 27210 bonds, 3410 residues, 2 models selected  

> select add #3

39931 atoms, 40810 bonds, 5115 residues, 3 models selected  

> color sel bypolymer

> hide #1 models

> hide #2 models

> hide #3 models

> select subtract #1

26601 atoms, 27187 bonds, 3410 residues, 2 models selected  

> select subtract #2

13307 atoms, 13600 bonds, 1705 residues, 1 model selected  

> select subtract #3

Nothing selected  

> select add #1

13330 atoms, 13623 bonds, 1705 residues, 1 model selected  

> color byattribute alphafold sel

No known/registered numeric attribute alphafold  

> show #1 models

> color byattribute alphafold sel palette alphafold

No known/registered numeric attribute alphafold  

> color sel palette alphafold

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color palette alphafold

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color bfactor sel

13330 atoms, 1705 residues, atom bfactor range 11.3 to 98.2  

> help help:user

> help help:devel

> help help:user

> color bfactor sel palette alphafold

13330 atoms, 1705 residues, atom bfactor range 11.3 to 98.2  

> select #1/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #1/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1351 atoms, 1325 bonds, 173 residues, 1 model selected  

> color sel red

> select #2/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #2/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1347 atoms, 1321 bonds, 173 residues, 1 model selected  

> color sel green

> select #3/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #3/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1348 atoms, 1322 bonds, 173 residues, 1 model selected  

> color bfactor sel palette alphafold

1348 atoms, 173 residues, atom bfactor range 14.3 to 97.2  

> select subtract #3

Nothing selected  

> show #2 models

> hide #2 models

> hide #1 models

> select add #1

13330 atoms, 13623 bonds, 1705 residues, 1 model selected  

> select add #2

26624 atoms, 27210 bonds, 3410 residues, 2 models selected  

> select add #3

39931 atoms, 40810 bonds, 5115 residues, 3 models selected  

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #1/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1351 atoms, 1325 bonds, 173 residues, 1 model selected  

> color sel red

> select #2/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #2/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1347 atoms, 1321 bonds, 173 residues, 1 model selected  

> color sel green

> select #3/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #3/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1348 atoms, 1322 bonds, 173 residues, 1 model selected  

> color bfactor sel palette alphafold

1348 atoms, 173 residues, atom bfactor range 14.3 to 97.2  

> select subtract #3

Nothing selected  

> show #3 models

> color #3 white

> color bfactor sel palette alphafold

No atoms specified  

> select #3/A: 17, 18, 35, 36, 38, 39, 42, 43, 45, 46, 49, 50, 53, 54, 55, 58,
> 60, 61, 273, 274, 275, 276, 362, 363, 364, 365, 366, 367, 368, 370, 399,
> 400, 414, 671, 672, 685, 686, 687, 688, 699, 700, 729, 730, 732, 733, 734,
> 738, 739, 740, 741, 754, 757, 758, 759, 763, 771, 783, 786, 787, 789, 790,
> 810, 827, 829, 830, 831, 832, 833, 834, 835, 836, 837, 853, 854, 888, 889,
> 890, 891, 892, 893, 894, 895, 896, 897, 934, 946, 947, 948, 949, 950, 951
> #3/B: 20, 23, 24, 26, 27, 30, 31, 34, 37, 38, 39, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 56, 128, 129, 130, 131, 230, 231, 232, 233, 234,
> 237, 240, 250, 252, 265, 269, 270, 271, 272, 273, 274, 275, 276, 280, 420,
> 421, 449, 450, 479, 481, 482, 483, 487, 488, 489, 502, 534, 535, 537, 538,
> 559, 705, 707, 708, 709, 710, 711, 712, 713, 714, 715, 716, 717, 718, 719,
> 720, 736, 737

1348 atoms, 1322 bonds, 173 residues, 1 model selected  

> color bfactor sel palette alphafold range 70,100

1348 atoms, 173 residues, atom bfactor range 14.3 to 97.2  

> color bfactor sel palette alphafold

1348 atoms, 173 residues, atom bfactor range 14.3 to 97.2  

> select #1/A: 15, 16, 17, 18, 19, 20, 24, 272, 273, 274, 275, 276, 277, 361,
> 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, 373, 399, 400, 412, 413,
> 414, 415, 416, 424, 427, 428, 431, 436, 665, 668, 688, 689, 825, 826, 827,
> 828, 829, 830, 831, 945, 946, 947, 948, 949, 950, 951 #1/B: 127, 128, 129,
> 130, 131, 230, 231, 232, 233, 234, 235, 237, 238, 239, 240, 241, 251, 252,
> 253, 254, 264, 265, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277,
> 278, 280, 281, 417, 419, 420, 710, 711, 712, 713, 715, 716, 717, 718, 719,
> 720, 721, 728, 730, 733, 734, 735, 736, 737, 738

891 atoms, 887 bonds, 113 residues, 1 model selected  

> color sel red

> select #2/A: 15, 16, 17, 18, 19, 20, 24, 272, 273, 274, 275, 276, 277, 361,
> 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, 373, 399, 400, 412, 413,
> 414, 415, 416, 424, 427, 428, 431, 436, 665, 668, 688, 689, 825, 826, 827,
> 828, 829, 830, 831, 945, 946, 947, 948, 949, 950, 951 #2/B: 127, 128, 129,
> 130, 131, 230, 231, 232, 233, 234, 235, 237, 238, 239, 240, 241, 251, 252,
> 253, 254, 264, 265, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277,
> 278, 280, 281, 417, 419, 420, 710, 711, 712, 713, 715, 716, 717, 718, 719,
> 720, 721, 728, 730, 733, 734, 735, 736, 737, 738

887 atoms, 883 bonds, 113 residues, 1 model selected  

> color sel green

> select #3/A: 15, 16, 17, 18, 19, 20, 24, 272, 273, 274, 275, 276, 277, 361,
> 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, 373, 399, 400, 412, 413,
> 414, 415, 416, 424, 427, 428, 431, 436, 665, 668, 688, 689, 825, 826, 827,
> 828, 829, 830, 831, 945, 946, 947, 948, 949, 950, 951 #3/B: 127, 128, 129,
> 130, 131, 230, 231, 232, 233, 234, 235, 237, 238, 239, 240, 241, 251, 252,
> 253, 254, 264, 265, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277,
> 278, 280, 281, 417, 419, 420, 710, 711, 712, 713, 715, 716, 717, 718, 719,
> 720, 721, 728, 730, 733, 734, 735, 736, 737, 738

888 atoms, 884 bonds, 113 residues, 1 model selected  

> color bfactor sel palette alphafold

888 atoms, 113 residues, atom bfactor range 14.3 to 69.4  

> select subtract #3

Nothing selected  

> select #1/A: 31, 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
> 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700,
> 701, 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753,
> 754, 755, 770, 771, 772, 773, 776, 782, 783, 785, 786, 787, 788, 789, 790,
> 791, 793, 794, 809, 810, 811, 812, 838, 839, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 933, 934, 937 #1/B: 19,
> 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40,
> 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 60, 62, 66,
> 226, 228, 229, 230, 231, 250, 420, 421, 422, 448, 449, 450, 451, 452, 478,
> 479, 480, 481, 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533,
> 534, 535, 536, 537, 538, 539, 541, 542, 558, 559, 680, 683, 714, 715, 716

1446 atoms, 1439 bonds, 175 residues, 1 model selected  

> color sel red

> select #2/A: 31, 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
> 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700,
> 701, 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753,
> 754, 755, 770, 771, 772, 773, 776, 782, 783, 785, 786, 787, 788, 789, 790,
> 791, 793, 794, 809, 810, 811, 812, 838, 839, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 933, 934, 937 #2/B: 19,
> 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40,
> 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 60, 62, 66,
> 226, 228, 229, 230, 231, 250, 420, 421, 422, 448, 449, 450, 451, 452, 478,
> 479, 480, 481, 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533,
> 534, 535, 536, 537, 538, 539, 541, 542, 558, 559, 680, 683, 714, 715, 716

1446 atoms, 1439 bonds, 175 residues, 1 model selected  

> color sel green

> select #3/A: 31, 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
> 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700,
> 701, 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753,
> 754, 755, 770, 771, 772, 773, 776, 782, 783, 785, 786, 787, 788, 789, 790,
> 791, 793, 794, 809, 810, 811, 812, 838, 839, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 933, 934, 937 #3/B: 19,
> 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40,
> 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 60, 62, 66,
> 226, 228, 229, 230, 231, 250, 420, 421, 422, 448, 449, 450, 451, 452, 478,
> 479, 480, 481, 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533,
> 534, 535, 536, 537, 538, 539, 541, 542, 558, 559, 680, 683, 714, 715, 716

1446 atoms, 1439 bonds, 175 residues, 1 model selected  

> color bfactor sel palette alphafold

1446 atoms, 175 residues, atom bfactor range 52.2 to 98.2  

> select subtract #3

Nothing selected  

> select add #3

13307 atoms, 13600 bonds, 1705 residues, 1 model selected  

> color #3 white

> select #3/A: 31, 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
> 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700,
> 701, 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753,
> 754, 755, 770, 771, 772, 773, 776, 782, 783, 785, 786, 787, 788, 789, 790,
> 791, 793, 794, 809, 810, 811, 812, 838, 839, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 933, 934, 937 #3/B: 19,
> 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40,
> 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 60, 62, 66,
> 226, 228, 229, 230, 231, 250, 420, 421, 422, 448, 449, 450, 451, 452, 478,
> 479, 480, 481, 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533,
> 534, 535, 536, 537, 538, 539, 541, 542, 558, 559, 680, 683, 714, 715, 716

1446 atoms, 1439 bonds, 175 residues, 1 model selected  

> color bfactor sel palette alphafold

1446 atoms, 175 residues, atom bfactor range 52.2 to 98.2  

> select subtract #3

Nothing selected  

> show #2 models

> hide #3 models

> select #1/A: 31, 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
> 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700,
> 701, 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753,
> 754, 755, 770, 771, 772, 773, 776, 782, 783, 785, 786, 787, 788, 789, 790,
> 791, 793, 794, 809, 810, 811, 812, 838, 839, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 933, 934, 937 #1/B: 19,
> 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40,
> 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 60, 62, 66,
> 226, 228, 229, 230, 231, 250, 420, 421, 422, 448, 449, 450, 451, 452, 478,
> 479, 480, 481, 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533,
> 534, 535, 536, 537, 538, 539, 541, 542, 558, 559, 680, 683, 714, 715, 716

1446 atoms, 1439 bonds, 175 residues, 1 model selected  

> color bfactor sel palette alphafold

1446 atoms, 175 residues, atom bfactor range 15.2 to 98.1  

> select #2/A: 31, 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
> 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700,
> 701, 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753,
> 754, 755, 770, 771, 772, 773, 776, 782, 783, 785, 786, 787, 788, 789, 790,
> 791, 793, 794, 809, 810, 811, 812, 838, 839, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 933, 934, 937 #2/B: 19,
> 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40,
> 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 60, 62, 66,
> 226, 228, 229, 230, 231, 250, 420, 421, 422, 448, 449, 450, 451, 452, 478,
> 479, 480, 481, 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533,
> 534, 535, 536, 537, 538, 539, 541, 542, 558, 559, 680, 683, 714, 715, 716

1446 atoms, 1439 bonds, 175 residues, 1 model selected  

> color bfactor sel palette alphafold

1446 atoms, 175 residues, atom bfactor range 45.7 to 98.1  

> select #3/A: 31, 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
> 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700,
> 701, 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753,
> 754, 755, 770, 771, 772, 773, 776, 782, 783, 785, 786, 787, 788, 789, 790,
> 791, 793, 794, 809, 810, 811, 812, 838, 839, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 933, 934, 937 #3/B: 19,
> 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40,
> 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 60, 62, 66,
> 226, 228, 229, 230, 231, 250, 420, 421, 422, 448, 449, 450, 451, 452, 478,
> 479, 480, 481, 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533,
> 534, 535, 536, 537, 538, 539, 541, 542, 558, 559, 680, 683, 714, 715, 716

1446 atoms, 1439 bonds, 175 residues, 1 model selected  

> color bfactor sel palette alphafold

1446 atoms, 175 residues, atom bfactor range 52.2 to 98.2  

> select subtract #3

Nothing selected  

> color #1 white

> color #2 white

> color #3 white

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 31, 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
> 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700,
> 701, 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753,
> 754, 755, 770, 771, 772, 773, 776, 782, 783, 785, 786, 787, 788, 789, 790,
> 791, 793, 794, 809, 810, 811, 812, 838, 839, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 933, 934, 937 #1/B: 19,
> 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40,
> 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 60, 62, 66,
> 226, 228, 229, 230, 231, 250, 420, 421, 422, 448, 449, 450, 451, 452, 478,
> 479, 480, 481, 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533,
> 534, 535, 536, 537, 538, 539, 541, 542, 558, 559, 680, 683, 714, 715, 716

1446 atoms, 1439 bonds, 175 residues, 1 model selected  

> color bfactor sel palette alphafold

1446 atoms, 175 residues, atom bfactor range 15.2 to 98.1  

> select #2/A: 31, 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
> 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700,
> 701, 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753,
> 754, 755, 770, 771, 772, 773, 776, 782, 783, 785, 786, 787, 788, 789, 790,
> 791, 793, 794, 809, 810, 811, 812, 838, 839, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 933, 934, 937 #2/B: 19,
> 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40,
> 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 60, 62, 66,
> 226, 228, 229, 230, 231, 250, 420, 421, 422, 448, 449, 450, 451, 452, 478,
> 479, 480, 481, 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533,
> 534, 535, 536, 537, 538, 539, 541, 542, 558, 559, 680, 683, 714, 715, 716

1446 atoms, 1439 bonds, 175 residues, 1 model selected  

> color bfactor sel palette alphafold

1446 atoms, 175 residues, atom bfactor range 45.7 to 98.1  

> select #3/A: 31, 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
> 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700,
> 701, 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753,
> 754, 755, 770, 771, 772, 773, 776, 782, 783, 785, 786, 787, 788, 789, 790,
> 791, 793, 794, 809, 810, 811, 812, 838, 839, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 933, 934, 937 #3/B: 19,
> 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40,
> 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 60, 62, 66,
> 226, 228, 229, 230, 231, 250, 420, 421, 422, 448, 449, 450, 451, 452, 478,
> 479, 480, 481, 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533,
> 534, 535, 536, 537, 538, 539, 541, 542, 558, 559, 680, 683, 714, 715, 716

1446 atoms, 1439 bonds, 175 residues, 1 model selected  

> color bfactor sel palette alphafold

1446 atoms, 175 residues, atom bfactor range 52.2 to 98.2  

> select subtract #3

Nothing selected  

> hide #2 models

> show #1 models

> show #3 models

> hide #1 models

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 53,
> 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700, 701,
> 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753, 754,
> 755, 776, 782, 783, 785, 786, 787, 788, 789, 790, 791, 793, 794, 809, 810,
> 811, 812, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 902,
> 933, 934, 937 #1/B: 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,
> 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56,
> 57, 60, 62, 66, 228, 229, 421, 422, 448, 449, 450, 451, 452, 479, 480, 481,
> 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533, 534, 535, 536,
> 537, 538, 539, 541, 542, 558, 559, 680, 683

1262 atoms, 1253 bonds, 154 residues, 1 model selected  

> color bfactor sel palette alphafold

1262 atoms, 154 residues, atom bfactor range 63 to 98.1  

> select #2/A: 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 53,
> 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700, 701,
> 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753, 754,
> 755, 776, 782, 783, 785, 786, 787, 788, 789, 790, 791, 793, 794, 809, 810,
> 811, 812, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 902,
> 933, 934, 937 #2/B: 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,
> 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56,
> 57, 60, 62, 66, 228, 229, 421, 422, 448, 449, 450, 451, 452, 479, 480, 481,
> 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533, 534, 535, 536,
> 537, 538, 539, 541, 542, 558, 559, 680, 683

1262 atoms, 1253 bonds, 154 residues, 1 model selected  

> color bfactor sel palette alphafold

1262 atoms, 154 residues, atom bfactor range 64.1 to 98.1  

> select #3/A: 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 53,
> 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700, 701,
> 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753, 754,
> 755, 776, 782, 783, 785, 786, 787, 788, 789, 790, 791, 793, 794, 809, 810,
> 811, 812, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 902,
> 933, 934, 937 #3/B: 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,
> 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56,
> 57, 60, 62, 66, 228, 229, 421, 422, 448, 449, 450, 451, 452, 479, 480, 481,
> 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533, 534, 535, 536,
> 537, 538, 539, 541, 542, 558, 559, 680, 683

1262 atoms, 1253 bonds, 154 residues, 1 model selected  

> color bfactor sel palette alphafold

1262 atoms, 154 residues, atom bfactor range 62.9 to 98.2  

> select subtract #3

Nothing selected  

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 53,
> 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700, 701,
> 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753, 754,
> 755, 776, 782, 783, 785, 786, 787, 788, 789, 790, 791, 793, 794, 809, 810,
> 811, 812, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 902,
> 933, 934, 937 #1/B: 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,
> 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56,
> 57, 60, 62, 66, 228, 229, 421, 422, 448, 449, 450, 451, 452, 479, 480, 481,
> 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533, 534, 535, 536,
> 537, 538, 539, 541, 542, 558, 559, 680, 683

1262 atoms, 1253 bonds, 154 residues, 1 model selected  

> color bfactor sel palette alphafold

1262 atoms, 154 residues, atom bfactor range 63 to 98.1  

> select #2/A: 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 53,
> 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700, 701,
> 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753, 754,
> 755, 776, 782, 783, 785, 786, 787, 788, 789, 790, 791, 793, 794, 809, 810,
> 811, 812, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 902,
> 933, 934, 937 #2/B: 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,
> 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56,
> 57, 60, 62, 66, 228, 229, 421, 422, 448, 449, 450, 451, 452, 479, 480, 481,
> 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533, 534, 535, 536,
> 537, 538, 539, 541, 542, 558, 559, 680, 683

1262 atoms, 1253 bonds, 154 residues, 1 model selected  

> color bfactor sel palette alphafold

1262 atoms, 154 residues, atom bfactor range 64.1 to 98.1  

> select #3/A: 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 53,
> 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700, 701,
> 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753, 754,
> 755, 776, 782, 783, 785, 786, 787, 788, 789, 790, 791, 793, 794, 809, 810,
> 811, 812, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 902,
> 933, 934, 937 #3/B: 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,
> 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56,
> 57, 60, 62, 66, 228, 229, 421, 422, 448, 449, 450, 451, 452, 479, 480, 481,
> 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533, 534, 535, 536,
> 537, 538, 539, 541, 542, 558, 559, 680, 683

1262 atoms, 1253 bonds, 154 residues, 1 model selected  

> color bfactor sel palette alphafold

1262 atoms, 154 residues, atom bfactor range 62.9 to 98.2  

> select subtract #3

Nothing selected  

> show #2 models

> hide #3 models

> hide #2 models

> show #1 models

> show #3 models

> hide #1 models

> select #3/A: 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 53,
> 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700, 701,
> 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753, 754,
> 755, 776, 782, 783, 785, 786, 787, 788, 789, 790, 791, 793, 794, 809, 810,
> 811, 812, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 902,
> 933, 934, 937 #3/B: 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,
> 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56,
> 57, 60, 62, 66, 228, 229, 421, 422, 448, 449, 450, 451, 452, 479, 480, 481,
> 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533, 534, 535, 536,
> 537, 538, 539, 541, 542, 558, 559, 680, 683

1262 atoms, 1253 bonds, 154 residues, 1 model selected  

> hbonds sel reveal true

552 hydrogen bonds found  

> hide #3 models

> show #3 models

> hide #4 models

> show #4 models

> hide #4 models

> select add #3

13307 atoms, 13600 bonds, 211 pseudobonds, 1705 residues, 2 models selected  

> select subtract #3

Nothing selected  

> show #4 models

> hide #4 models

> show #4 models

> hide #4 models

> show #4 models

> select #3/A: 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 53,
> 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700, 701,
> 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753, 754,
> 755, 776, 782, 783, 785, 786, 787, 788, 789, 790, 791, 793, 794, 809, 810,
> 811, 812, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 902,
> 933, 934, 937 #3/B: 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,
> 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56,
> 57, 60, 62, 66, 228, 229, 421, 422, 448, 449, 450, 451, 452, 479, 480, 481,
> 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533, 534, 535, 536,
> 537, 538, 539, 541, 542, 558, 559, 680, 683

1262 atoms, 1253 bonds, 99 pseudobonds, 154 residues, 2 models selected  

> hbonds sel reveal true interModel true

552 hydrogen bonds found  

> hide #4 models

> show #4 models

> hbonds sel reveal true interModel true intraModel false

341 hydrogen bonds found  

> hbonds sel reveal true interModel true

552 hydrogen bonds found  

> hbonds sel reveal true interModel true intraModel false

341 hydrogen bonds found  

> select add #4

1262 atoms, 1253 bonds, 341 pseudobonds, 154 residues, 2 models selected  

> select add #3

13307 atoms, 13600 bonds, 341 pseudobonds, 1705 residues, 2 models selected  

> select subtract #3

Nothing selected  

> select add #4

341 pseudobonds, 1 model selected  

> select subtract #4

Nothing selected  

> select add #4

341 pseudobonds, 1 model selected  

> hide #4 models

> show #4 models

> hbonds sel reveal true intraModel false

Atom specifier selects no atoms  

> select #3/A: 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 53,
> 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700, 701,
> 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753, 754,
> 755, 776, 782, 783, 785, 786, 787, 788, 789, 790, 791, 793, 794, 809, 810,
> 811, 812, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 902,
> 933, 934, 937 #3/B: 19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,
> 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56,
> 57, 60, 62, 66, 228, 229, 421, 422, 448, 449, 450, 451, 452, 479, 480, 481,
> 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533, 534, 535, 536,
> 537, 538, 539, 541, 542, 558, 559, 680, 683

1262 atoms, 1253 bonds, 154 residues, 1 model selected  

> hbonds sel reveal true intraModel false

341 hydrogen bonds found  

> close #4

> hide sel atoms

> show #2 models

> hide #3 models

> select add #1

14592 atoms, 14876 bonds, 1859 residues, 2 models selected  

> select add #2

27886 atoms, 28463 bonds, 3564 residues, 3 models selected  

> select add #3

39931 atoms, 40810 bonds, 5115 residues, 3 models selected  

> select subtract #3

26624 atoms, 27210 bonds, 3410 residues, 2 models selected  

> select add #3

39931 atoms, 40810 bonds, 5115 residues, 3 models selected  

> hide sel & #2 atoms

> select subtract #2

26637 atoms, 27223 bonds, 3410 residues, 2 models selected  

> select subtract #3

13330 atoms, 13623 bonds, 1705 residues, 1 model selected  

> hide #2 models

> show #1 models

> select subtract #1

Nothing selected  

> select add #1

13330 atoms, 13623 bonds, 1705 residues, 1 model selected  

> select subtract #1

Nothing selected  

> hide #1 atoms

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 890, 893 #1/B: 43, 48

25 atoms, 23 bonds, 4 residues, 1 model selected  

> color bfactor sel palette alphafold

25 atoms, 4 residues, atom bfactor range 68.6 to 82.7  

> select #2/A: 890, 893 #2/B: 43, 48

25 atoms, 23 bonds, 4 residues, 1 model selected  

> color bfactor sel palette alphafold

25 atoms, 4 residues, atom bfactor range 67.9 to 84.8  

> select #3/A: 890, 893 #3/B: 43, 48

25 atoms, 23 bonds, 4 residues, 1 model selected  

> color bfactor sel palette alphafold

25 atoms, 4 residues, atom bfactor range 66.1 to 78.4  

> select subtract #3

Nothing selected  

> hide #1 models

> show #2 models

> hide #2 models

> show #3 models

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #1/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 15.1 to 98.2  

> select #2/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #2/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 41.7 to 98.3  

> select #3/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #3/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 49.3 to 98.2  

> select subtract #3

Nothing selected  

> hide #3 atoms

> show #2 models

> hide #3 models

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
> 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67, 68, 71,
> 72, 74, 75, 78, 672, 673, 674, 678, 697, 698, 699, 700, 701, 702, 703, 728,
> 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740, 741, 742, 752,
> 753, 754, 755, 756, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 809, 810, 811, 812, 885, 886, 887, 889, 890, 891, 894, 895,
> 897, 898, 900, 902, 903, 904, 933, 934, 935, 936, 937, 938 #1/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,
> 65, 66, 69, 70, 422, 423, 424, 425, 428, 447, 448, 449, 450, 451, 452, 477,
> 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 500, 501,
> 502, 503, 504, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541,
> 542, 557, 558, 559, 560, 561, 679, 680, 681, 683, 684, 687

1696 atoms, 1699 bonds, 207 residues, 1 model selected  

> color bfactor sel palette alphafold

1696 atoms, 207 residues, atom bfactor range 76.8 to 98.2  

> select #2/A: 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
> 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67, 68, 71,
> 72, 74, 75, 78, 672, 673, 674, 678, 697, 698, 699, 700, 701, 702, 703, 728,
> 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740, 741, 742, 752,
> 753, 754, 755, 756, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 809, 810, 811, 812, 885, 886, 887, 889, 890, 891, 894, 895,
> 897, 898, 900, 902, 903, 904, 933, 934, 935, 936, 937, 938 #2/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,
> 65, 66, 69, 70, 422, 423, 424, 425, 428, 447, 448, 449, 450, 451, 452, 477,
> 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 500, 501,
> 502, 503, 504, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541,
> 542, 557, 558, 559, 560, 561, 679, 680, 681, 683, 684, 687

1696 atoms, 1699 bonds, 207 residues, 1 model selected  

> color bfactor sel palette alphafold

1696 atoms, 207 residues, atom bfactor range 76 to 98.3  

> select #3/A: 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
> 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67, 68, 71,
> 72, 74, 75, 78, 672, 673, 674, 678, 697, 698, 699, 700, 701, 702, 703, 728,
> 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740, 741, 742, 752,
> 753, 754, 755, 756, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 809, 810, 811, 812, 885, 886, 887, 889, 890, 891, 894, 895,
> 897, 898, 900, 902, 903, 904, 933, 934, 935, 936, 937, 938 #3/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,
> 65, 66, 69, 70, 422, 423, 424, 425, 428, 447, 448, 449, 450, 451, 452, 477,
> 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 500, 501,
> 502, 503, 504, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541,
> 542, 557, 558, 559, 560, 561, 679, 680, 681, 683, 684, 687

1696 atoms, 1699 bonds, 207 residues, 1 model selected  

> color bfactor sel palette alphafold

1696 atoms, 207 residues, atom bfactor range 74.8 to 98.2  

> select subtract #3

Nothing selected  

> hide #2 models

> show #3 models

> show #2 models

> hide #3 models

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #1/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 15.1 to 98.2  

> select #2/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #2/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 41.7 to 98.3  

> select #3/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #3/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 49.3 to 98.2  

> select subtract #3

Nothing selected  

> color #2 bychain

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #1/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 15.1 to 98.2  

> select #2/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #2/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 41.7 to 98.3  

> select #3/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #3/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 49.3 to 98.2  

> select subtract #3

Nothing selected  

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #1/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 15.1 to 98.2  

> select #2/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #2/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 41.7 to 98.3  

> select #3/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #3/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 49.3 to 98.2  

> select subtract #3

Nothing selected  

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
> 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67, 68, 71,
> 72, 74, 75, 78, 672, 673, 674, 678, 697, 698, 699, 700, 701, 702, 703, 728,
> 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740, 741, 742, 752,
> 753, 754, 755, 756, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 809, 810, 811, 812, 885, 886, 887, 889, 890, 891, 894, 895,
> 897, 898, 900, 902, 903, 904, 933, 934, 935, 936, 937, 938 #1/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,
> 65, 66, 69, 70, 422, 423, 424, 425, 428, 447, 448, 449, 450, 451, 452, 477,
> 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 500, 501,
> 502, 503, 504, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541,
> 542, 557, 558, 559, 560, 561, 679, 680, 681, 683, 684, 687

1696 atoms, 1699 bonds, 207 residues, 1 model selected  

> color bfactor sel palette alphafold

1696 atoms, 207 residues, atom bfactor range 76.8 to 98.2  

> select #2/A: 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
> 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67, 68, 71,
> 72, 74, 75, 78, 672, 673, 674, 678, 697, 698, 699, 700, 701, 702, 703, 728,
> 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740, 741, 742, 752,
> 753, 754, 755, 756, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 809, 810, 811, 812, 885, 886, 887, 889, 890, 891, 894, 895,
> 897, 898, 900, 902, 903, 904, 933, 934, 935, 936, 937, 938 #2/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,
> 65, 66, 69, 70, 422, 423, 424, 425, 428, 447, 448, 449, 450, 451, 452, 477,
> 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 500, 501,
> 502, 503, 504, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541,
> 542, 557, 558, 559, 560, 561, 679, 680, 681, 683, 684, 687

1696 atoms, 1699 bonds, 207 residues, 1 model selected  

> color bfactor sel palette alphafold

1696 atoms, 207 residues, atom bfactor range 76 to 98.3  

> select #3/A: 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
> 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67, 68, 71,
> 72, 74, 75, 78, 672, 673, 674, 678, 697, 698, 699, 700, 701, 702, 703, 728,
> 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740, 741, 742, 752,
> 753, 754, 755, 756, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 809, 810, 811, 812, 885, 886, 887, 889, 890, 891, 894, 895,
> 897, 898, 900, 902, 903, 904, 933, 934, 935, 936, 937, 938 #3/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,
> 65, 66, 69, 70, 422, 423, 424, 425, 428, 447, 448, 449, 450, 451, 452, 477,
> 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 500, 501,
> 502, 503, 504, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541,
> 542, 557, 558, 559, 560, 561, 679, 680, 681, 683, 684, 687

1696 atoms, 1699 bonds, 207 residues, 1 model selected  

> color bfactor sel palette alphafold

1696 atoms, 207 residues, atom bfactor range 74.8 to 98.2  

> select subtract #3

Nothing selected  

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47,
> 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67,
> 68, 71, 72, 74, 75, 78, 671, 672, 673, 674, 678, 697, 698, 699, 700, 701,
> 702, 703, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,
> 741, 742, 752, 753, 754, 755, 756, 770, 772, 773, 776, 779, 782, 783, 784,
> 785, 786, 787, 788, 789, 790, 791, 792, 793, 794, 795, 809, 810, 811, 812,
> 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899,
> 900, 902, 903, 904, 905, 933, 934, 935, 936, 937, 938 #1/B: 16, 17, 19, 20,
> 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39,
> 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61,
> 62, 63, 65, 66, 69, 70, 227, 228, 229, 248, 421, 422, 423, 424, 425, 428,
> 447, 448, 449, 450, 451, 452, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687

1888 atoms, 1894 bonds, 230 residues, 1 model selected  

> color bfactor sel palette alphafold

1888 atoms, 230 residues, atom bfactor range 63 to 98.2  

> select #2/A: 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47,
> 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67,
> 68, 71, 72, 74, 75, 78, 671, 672, 673, 674, 678, 697, 698, 699, 700, 701,
> 702, 703, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,
> 741, 742, 752, 753, 754, 755, 756, 770, 772, 773, 776, 779, 782, 783, 784,
> 785, 786, 787, 788, 789, 790, 791, 792, 793, 794, 795, 809, 810, 811, 812,
> 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899,
> 900, 902, 903, 904, 905, 933, 934, 935, 936, 937, 938 #2/B: 16, 17, 19, 20,
> 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39,
> 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61,
> 62, 63, 65, 66, 69, 70, 227, 228, 229, 248, 421, 422, 423, 424, 425, 428,
> 447, 448, 449, 450, 451, 452, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687

1888 atoms, 1894 bonds, 230 residues, 1 model selected  

> color bfactor sel palette alphafold

1888 atoms, 230 residues, atom bfactor range 64.1 to 98.3  

> select #3/A: 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47,
> 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67,
> 68, 71, 72, 74, 75, 78, 671, 672, 673, 674, 678, 697, 698, 699, 700, 701,
> 702, 703, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,
> 741, 742, 752, 753, 754, 755, 756, 770, 772, 773, 776, 779, 782, 783, 784,
> 785, 786, 787, 788, 789, 790, 791, 792, 793, 794, 795, 809, 810, 811, 812,
> 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899,
> 900, 902, 903, 904, 905, 933, 934, 935, 936, 937, 938 #3/B: 16, 17, 19, 20,
> 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39,
> 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61,
> 62, 63, 65, 66, 69, 70, 227, 228, 229, 248, 421, 422, 423, 424, 425, 428,
> 447, 448, 449, 450, 451, 452, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687

1888 atoms, 1894 bonds, 230 residues, 1 model selected  

> color bfactor sel palette alphafold

1888 atoms, 230 residues, atom bfactor range 62.9 to 98.2  

> select subtract #3

Nothing selected  

> hide #2 models

> show #3 models

> color #3 bychain

> undo

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #1/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 15.1 to 98.2  

> select #2/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #2/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 41.7 to 98.3  

> select #3/A: 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46,
> 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65,
> 67, 68, 71, 72, 74, 75, 78, 670, 671, 672, 673, 674, 678, 697, 698, 699,
> 700, 701, 702, 703, 727, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737,
> 738, 739, 740, 741, 742, 752, 753, 754, 755, 756, 768, 769, 770, 771, 772,
> 773, 774, 775, 776, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 795, 804, 809, 810, 811, 812, 838, 839, 840, 848, 849, 885,
> 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899, 900,
> 901, 902, 903, 904, 905, 908, 933, 934, 935, 936, 937, 938 #3/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57,
> 58, 59, 60, 61, 62, 63, 65, 66, 69, 70, 224, 225, 226, 227, 228, 229, 230,
> 231, 248, 249, 250, 251, 253, 420, 421, 422, 423, 424, 425, 428, 447, 448,
> 449, 450, 451, 452, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687, 713, 714, 715, 716

2188 atoms, 2198 bonds, 265 residues, 1 model selected  

> color bfactor sel palette alphafold

2188 atoms, 265 residues, atom bfactor range 49.3 to 98.2  

> select subtract #3

Nothing selected  

> color #3 bychain

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47,
> 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67,
> 68, 71, 72, 74, 75, 78, 671, 672, 673, 674, 678, 697, 698, 699, 700, 701,
> 702, 703, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,
> 741, 742, 752, 753, 754, 755, 756, 770, 772, 773, 776, 779, 782, 783, 784,
> 785, 786, 787, 788, 789, 790, 791, 792, 793, 794, 795, 809, 810, 811, 812,
> 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899,
> 900, 902, 903, 904, 905, 933, 934, 935, 936, 937, 938 #1/B: 16, 17, 19, 20,
> 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39,
> 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61,
> 62, 63, 65, 66, 69, 70, 227, 228, 229, 248, 421, 422, 423, 424, 425, 428,
> 447, 448, 449, 450, 451, 452, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687

1888 atoms, 1894 bonds, 230 residues, 1 model selected  

> color bfactor sel palette alphafold

1888 atoms, 230 residues, atom bfactor range 63 to 98.2  

> select #2/A: 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47,
> 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67,
> 68, 71, 72, 74, 75, 78, 671, 672, 673, 674, 678, 697, 698, 699, 700, 701,
> 702, 703, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,
> 741, 742, 752, 753, 754, 755, 756, 770, 772, 773, 776, 779, 782, 783, 784,
> 785, 786, 787, 788, 789, 790, 791, 792, 793, 794, 795, 809, 810, 811, 812,
> 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899,
> 900, 902, 903, 904, 905, 933, 934, 935, 936, 937, 938 #2/B: 16, 17, 19, 20,
> 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39,
> 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61,
> 62, 63, 65, 66, 69, 70, 227, 228, 229, 248, 421, 422, 423, 424, 425, 428,
> 447, 448, 449, 450, 451, 452, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687

1888 atoms, 1894 bonds, 230 residues, 1 model selected  

> color bfactor sel palette alphafold

1888 atoms, 230 residues, atom bfactor range 64.1 to 98.3  

> select #3/A: 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47,
> 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67,
> 68, 71, 72, 74, 75, 78, 671, 672, 673, 674, 678, 697, 698, 699, 700, 701,
> 702, 703, 728, 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740,
> 741, 742, 752, 753, 754, 755, 756, 770, 772, 773, 776, 779, 782, 783, 784,
> 785, 786, 787, 788, 789, 790, 791, 792, 793, 794, 795, 809, 810, 811, 812,
> 885, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896, 897, 898, 899,
> 900, 902, 903, 904, 905, 933, 934, 935, 936, 937, 938 #3/B: 16, 17, 19, 20,
> 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39,
> 40, 41, 42, 43, 45, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61,
> 62, 63, 65, 66, 69, 70, 227, 228, 229, 248, 421, 422, 423, 424, 425, 428,
> 447, 448, 449, 450, 451, 452, 477, 478, 479, 480, 481, 482, 483, 484, 485,
> 486, 487, 488, 489, 490, 500, 501, 502, 503, 504, 530, 531, 532, 533, 534,
> 535, 536, 537, 538, 539, 540, 541, 542, 543, 557, 558, 559, 560, 561, 679,
> 680, 681, 683, 684, 687

1888 atoms, 1894 bonds, 230 residues, 1 model selected  

> color bfactor sel palette alphafold

1888 atoms, 230 residues, atom bfactor range 62.9 to 98.2  

> select subtract #3

Nothing selected  

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
> 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67, 68, 71,
> 72, 74, 75, 78, 672, 673, 674, 678, 697, 698, 699, 700, 701, 702, 703, 728,
> 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740, 741, 742, 752,
> 753, 754, 755, 756, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 809, 810, 811, 812, 885, 886, 887, 889, 890, 891, 894, 895,
> 897, 898, 900, 902, 903, 904, 933, 934, 935, 936, 937, 938 #1/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,
> 65, 66, 69, 70, 422, 423, 424, 425, 428, 447, 448, 449, 450, 451, 452, 477,
> 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 500, 501,
> 502, 503, 504, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541,
> 542, 557, 558, 559, 560, 561, 679, 680, 681, 683, 684, 687

1696 atoms, 1699 bonds, 207 residues, 1 model selected  

> color bfactor sel palette alphafold

1696 atoms, 207 residues, atom bfactor range 76.8 to 98.2  

> select #2/A: 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
> 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67, 68, 71,
> 72, 74, 75, 78, 672, 673, 674, 678, 697, 698, 699, 700, 701, 702, 703, 728,
> 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740, 741, 742, 752,
> 753, 754, 755, 756, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 809, 810, 811, 812, 885, 886, 887, 889, 890, 891, 894, 895,
> 897, 898, 900, 902, 903, 904, 933, 934, 935, 936, 937, 938 #2/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,
> 65, 66, 69, 70, 422, 423, 424, 425, 428, 447, 448, 449, 450, 451, 452, 477,
> 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 500, 501,
> 502, 503, 504, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541,
> 542, 557, 558, 559, 560, 561, 679, 680, 681, 683, 684, 687

1696 atoms, 1699 bonds, 207 residues, 1 model selected  

> color bfactor sel palette alphafold

1696 atoms, 207 residues, atom bfactor range 76 to 98.3  

> select #3/A: 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49,
> 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67, 68, 71,
> 72, 74, 75, 78, 672, 673, 674, 678, 697, 698, 699, 700, 701, 702, 703, 728,
> 729, 730, 731, 732, 733, 734, 735, 736, 737, 738, 739, 740, 741, 742, 752,
> 753, 754, 755, 756, 779, 782, 783, 784, 785, 786, 787, 788, 789, 790, 791,
> 792, 793, 794, 809, 810, 811, 812, 885, 886, 887, 889, 890, 891, 894, 895,
> 897, 898, 900, 902, 903, 904, 933, 934, 935, 936, 937, 938 #3/B: 16, 17, 19,
> 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,
> 39, 40, 41, 42, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,
> 65, 66, 69, 70, 422, 423, 424, 425, 428, 447, 448, 449, 450, 451, 452, 477,
> 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 500, 501,
> 502, 503, 504, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541,
> 542, 557, 558, 559, 560, 561, 679, 680, 681, 683, 684, 687

1696 atoms, 1699 bonds, 207 residues, 1 model selected  

> color bfactor sel palette alphafold

1696 atoms, 207 residues, atom bfactor range 74.8 to 98.2  

> select subtract #3

Nothing selected  

> open "/Users/ahramkim/Library/CloudStorage/Dropbox/EB-AR/AR/Image Lab (Bio-
> RaD)/Alphafold/20230626_kinase_MAPK_mutation/mutation_pdb/ksr/FBgn0015402___FBgn0010269_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb"

Chain information for
FBgn0015402___FBgn0010269_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb
#4  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open "/Users/ahramkim/Library/CloudStorage/Dropbox/EB-AR/AR/Image Lab (Bio-
> RaD)/Alphafold/20230626_kinase_MAPK_mutation/mutation_pdb/ksr/FBgn0015402___FBgn0010269_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb"

Chain information for
FBgn0015402___FBgn0010269_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb
#5  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open "/Users/ahramkim/Library/CloudStorage/Dropbox/EB-AR/AR/Image Lab (Bio-
> RaD)/Alphafold/20230626_kinase_MAPK_mutation/mutation_pdb/ksr/FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb"

Chain information for
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb
#6  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> close

> open "/Users/ahramkim/Library/CloudStorage/Dropbox/EB-AR/AR/Image Lab (Bio-
> RaD)/Alphafold/20230626_kinase_MAPK_mutation/mutation_pdb/ksr/FBgn0015402___FBgn0010269_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb"

Chain information for
FBgn0015402___FBgn0010269_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb
#1  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open "/Users/ahramkim/Library/CloudStorage/Dropbox/EB-AR/AR/Image Lab (Bio-
> RaD)/Alphafold/20230626_kinase_MAPK_mutation/mutation_pdb/ksr/FBgn0015402___FBgn0010269_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb"

Chain information for
FBgn0015402___FBgn0010269_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb
#2  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open "/Users/ahramkim/Library/CloudStorage/Dropbox/EB-AR/AR/Image Lab (Bio-
> RaD)/Alphafold/20230626_kinase_MAPK_mutation/mutation_pdb/ksr/FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb"

Chain information for
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb
#3  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> mathmaker #1 to #3

Unknown command: mathmaker #1 to #3  

> matchmaker #1 to #3

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#3) with
FBgn0015402___FBgn0010269_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#1), sequence alignment score = 4879.3  
RMSD between 253 pruned atom pairs is 0.340 angstroms; (across all 966 pairs:
12.598)  
  

> matchmaker #2 to #3

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#3) with
FBgn0015402___FBgn0010269_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain A (#2), sequence alignment score = 4833.7  
RMSD between 185 pruned atom pairs is 0.455 angstroms; (across all 966 pairs:
42.257)  
  

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #1/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

737 atoms, 743 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

737 atoms, 91 residues, atom bfactor range 62.2 to 97.7  

> select #2/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #2/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

733 atoms, 739 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

733 atoms, 91 residues, atom bfactor range 62.6 to 97.7  

> select #3/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #3/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

734 atoms, 740 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

734 atoms, 91 residues, atom bfactor range 67 to 97.9  

> select subtract #3

Nothing selected  

> hide #2 models

> hide #3 models

> hide #1 models

> show #3 models

> show #2 models

> hide #3 models

> show #3 models

> hide #3 models

> show #3 models

> hide #3 models

> hide #2 models

> show #2 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> matchmaker #1 to #3/B:85, 88, 89, 90, 208, 209, 213, 240, 241, 242, 243,
> 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258,
> 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#1), sequence alignment score = 193.4  
RMSD between 39 pruned atom pairs is 0.351 angstroms; (across all 39 pairs:
0.351)  
  

> matchmaker #2 to #3/B:85, 88, 89, 90, 208, 209, 213, 240, 241, 242, 243,
> 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258,
> 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#2), sequence alignment score = 194.1  
RMSD between 39 pruned atom pairs is 0.200 angstroms; (across all 39 pairs:
0.200)  
  

> hide #2 models

> show #3 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> show #2 models

> hide #2 models

> hide #3 models

> select #1/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #1/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

737 atoms, 743 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

737 atoms, 91 residues, atom bfactor range 62.2 to 97.7  

> matchmaker #1 to #3/B:chain2_res

No 'to' model specified  

> select #2/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #2/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

733 atoms, 739 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

733 atoms, 91 residues, atom bfactor range 62.6 to 97.7  

> matchmaker #2 to #3/B:chain2_res

No 'to' model specified  

> select #3/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #3/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

734 atoms, 740 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

734 atoms, 91 residues, atom bfactor range 67 to 97.9  

> select subtract #3

Nothing selected  

> select #1/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #1/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

737 atoms, 743 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

737 atoms, 91 residues, atom bfactor range 62.2 to 97.7  

> matchmaker #1 to #3/B:85, 88, 89, 90, 208, 209, 213, 240, 241, 242, 243,
> 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258,
> 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#1), sequence alignment score = 193.4  
RMSD between 39 pruned atom pairs is 0.351 angstroms; (across all 39 pairs:
0.351)  
  

> select #2/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #2/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

733 atoms, 739 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

733 atoms, 91 residues, atom bfactor range 62.6 to 97.7  

> matchmaker #2 to #3/B:85, 88, 89, 90, 208, 209, 213, 240, 241, 242, 243,
> 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258,
> 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#2), sequence alignment score = 194.1  
RMSD between 39 pruned atom pairs is 0.200 angstroms; (across all 39 pairs:
0.200)  
  

> select #3/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #3/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

734 atoms, 740 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

734 atoms, 91 residues, atom bfactor range 67 to 97.9  

> show #3 models

> show #2 models

> select add #3

10506 atoms, 10734 bonds, 1362 residues, 1 model selected  

> hide #3 models

> show #3 models

> hide #3 models

> show #3 models

> hide #3 models

> show #3 models

> hide #3 models

> show #3 models

> select subtract #3

Nothing selected  

> hide #2 models

> show #2 models

> hide #2 models

> show #1 models

> hide #3 models

> show #3 models

> hide #3 models

> show #3 models

> hide #3 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #3 models

> hide #3 models

> show #2 models

> hide #2 models

> show #3 models

> hide #3 models

> color #3 #f5ffddff

> show #3 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> color #3 #e5e1feff

> color #3 #fee8dcff

> color #1/A #fee8dcff

> color #1/B #f5ffddff

> color #2/A #fee8dcff

> color #2/B #f5ffddff

> color #3/A #fee8dcff

> color #3/B #f5ffddff

> select #1/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #1/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

737 atoms, 743 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

737 atoms, 91 residues, atom bfactor range 62.2 to 97.7  

> matchmaker #1 to #3/B:85, 88, 89, 90, 208, 209, 213, 240, 241, 242, 243,
> 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258,
> 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#1), sequence alignment score = 193.4  
RMSD between 39 pruned atom pairs is 0.351 angstroms; (across all 39 pairs:
0.351)  
  

> select #2/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #2/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

733 atoms, 739 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

733 atoms, 91 residues, atom bfactor range 62.6 to 97.7  

> matchmaker #2 to #3/B:85, 88, 89, 90, 208, 209, 213, 240, 241, 242, 243,
> 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258,
> 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#2), sequence alignment score = 194.1  
RMSD between 39 pruned atom pairs is 0.200 angstroms; (across all 39 pairs:
0.200)  
  

> select #3/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #3/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

734 atoms, 740 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

734 atoms, 91 residues, atom bfactor range 67 to 97.9  

> select subtract #3

Nothing selected  

> select #1/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #1/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

737 atoms, 743 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

737 atoms, 91 residues, atom bfactor range 62.2 to 97.7  

> matchmaker #1 to #3/B:85, 88, 89, 90, 208, 209, 213, 240, 241, 242, 243,
> 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258,
> 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#1), sequence alignment score = 193.4  
RMSD between 39 pruned atom pairs is 0.351 angstroms; (across all 39 pairs:
0.351)  
  

> select #2/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #2/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

733 atoms, 739 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

733 atoms, 91 residues, atom bfactor range 62.6 to 97.7  

> matchmaker #2 to #3/B:85, 88, 89, 90, 208, 209, 213, 240, 241, 242, 243,
> 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258,
> 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#2), sequence alignment score = 194.1  
RMSD between 39 pruned atom pairs is 0.200 angstroms; (across all 39 pairs:
0.200)  
  

> select #3/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #3/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

734 atoms, 740 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

734 atoms, 91 residues, atom bfactor range 67 to 97.9  

> select subtract #3

Nothing selected  

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #1/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

737 atoms, 743 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

737 atoms, 91 residues, atom bfactor range 62.2 to 97.7  

> matchmaker #1 to #3/B:85, 88, 89, 90, 208, 209, 213, 240, 241, 242, 243,
> 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258,
> 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#1), sequence alignment score = 193.4  
RMSD between 39 pruned atom pairs is 0.351 angstroms; (across all 39 pairs:
0.351)  
  

> select #2/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #2/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

733 atoms, 739 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

733 atoms, 91 residues, atom bfactor range 62.6 to 97.7  

> matchmaker #2 to #3/B:85, 88, 89, 90, 208, 209, 213, 240, 241, 242, 243,
> 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258,
> 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#2), sequence alignment score = 194.1  
RMSD between 39 pruned atom pairs is 0.200 angstroms; (across all 39 pairs:
0.200)  
  

> select #3/A: 38, 39, 42, 46, 826, 827, 828, 829, 830, 831, 832, 833, 834,
> 835, 836, 837, 838, 839, 840, 845, 846, 847, 848, 849, 850, 851, 852, 853,
> 854, 855, 856, 860, 886, 887, 888, 889, 890, 891, 892, 893, 894, 895, 896,
> 897, 898, 899, 900, 901, 902, 903, 904, 905 #3/B: 85, 88, 89, 90, 208, 209,
> 213, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253,
> 254, 255, 256, 257, 258, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319,
> 320, 321, 322

734 atoms, 740 bonds, 91 residues, 1 model selected  

> color bfactor sel palette alphafold

734 atoms, 91 residues, atom bfactor range 67 to 97.9  

> select subtract #3

Nothing selected  

> view

[Repeated 1 time(s)]

> view orient

> view

[Repeated 1 time(s)]

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 828, 829, 830, 831, 832, 833, 834, 835, 836, 845, 848, 849,
> 850, 851, 852, 853, 854, 886, 889, 890, 891, 892, 893, 894, 895, 896, 897,
> 898, 899, 900, 902 #1/B: 241, 242, 243, 244, 245, 246, 247, 249, 250, 251,
> 252, 253, 254, 255, 256, 257, 311, 312, 313, 314, 315, 316, 317, 318, 321

440 atoms, 441 bonds, 56 residues, 1 model selected  

> color bfactor sel palette alphafold

440 atoms, 56 residues, atom bfactor range 72.1 to 97.7  

> matchmaker #1 to #3/B:241, 242, 243, 244, 245, 246, 247, 249, 250, 251, 252,
> 253, 254, 255, 256, 257, 311, 312, 313, 314, 315, 316, 317, 318, 321

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#1), sequence alignment score = 121.6  
RMSD between 25 pruned atom pairs is 0.156 angstroms; (across all 25 pairs:
0.156)  
  

> select #2/A: 828, 829, 830, 831, 832, 833, 834, 835, 836, 845, 848, 849,
> 850, 851, 852, 853, 854, 886, 889, 890, 891, 892, 893, 894, 895, 896, 897,
> 898, 899, 900, 902 #2/B: 241, 242, 243, 244, 245, 246, 247, 249, 250, 251,
> 252, 253, 254, 255, 256, 257, 311, 312, 313, 314, 315, 316, 317, 318, 321

436 atoms, 437 bonds, 56 residues, 1 model selected  

> color bfactor sel palette alphafold

436 atoms, 56 residues, atom bfactor range 73 to 97.7  

> matchmaker #2 to #3/B:241, 242, 243, 244, 245, 246, 247, 249, 250, 251, 252,
> 253, 254, 255, 256, 257, 311, 312, 313, 314, 315, 316, 317, 318, 321

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#2), sequence alignment score = 122.3  
RMSD between 25 pruned atom pairs is 0.077 angstroms; (across all 25 pairs:
0.077)  
  

> select #3/A: 828, 829, 830, 831, 832, 833, 834, 835, 836, 845, 848, 849,
> 850, 851, 852, 853, 854, 886, 889, 890, 891, 892, 893, 894, 895, 896, 897,
> 898, 899, 900, 902 #3/B: 241, 242, 243, 244, 245, 246, 247, 249, 250, 251,
> 252, 253, 254, 255, 256, 257, 311, 312, 313, 314, 315, 316, 317, 318, 321

437 atoms, 438 bonds, 56 residues, 1 model selected  

> color bfactor sel palette alphafold

437 atoms, 56 residues, atom bfactor range 76.4 to 97.9  

> select subtract #3

Nothing selected  

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 828, 829, 830, 831, 832, 833, 834, 835, 836, 845, 848, 849,
> 850, 851, 852, 853, 854, 886, 889, 890, 891, 892, 893, 894, 895, 896, 897,
> 898, 899, 900, 902 #1/B: 241, 242, 243, 244, 245, 246, 247, 249, 250, 251,
> 252, 253, 254, 255, 256, 257, 311, 312, 313, 314, 315, 316, 317, 318, 321

440 atoms, 441 bonds, 56 residues, 1 model selected  

> color bfactor sel palette alphafold

440 atoms, 56 residues, atom bfactor range 72.1 to 97.7  

> matchmaker #1 to #3/B:241, 242, 243, 244, 245, 246, 247, 249, 250, 251, 252,
> 253, 254, 255, 256, 257, 311, 312, 313, 314, 315, 316, 317, 318, 321

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#1), sequence alignment score = 121.6  
RMSD between 25 pruned atom pairs is 0.156 angstroms; (across all 25 pairs:
0.156)  
  

> select #2/A: 828, 829, 830, 831, 832, 833, 834, 835, 836, 845, 848, 849,
> 850, 851, 852, 853, 854, 886, 889, 890, 891, 892, 893, 894, 895, 896, 897,
> 898, 899, 900, 902 #2/B: 241, 242, 243, 244, 245, 246, 247, 249, 250, 251,
> 252, 253, 254, 255, 256, 257, 311, 312, 313, 314, 315, 316, 317, 318, 321

436 atoms, 437 bonds, 56 residues, 1 model selected  

> color bfactor sel palette alphafold

436 atoms, 56 residues, atom bfactor range 73 to 97.7  

> matchmaker #2 to #3/B:241, 242, 243, 244, 245, 246, 247, 249, 250, 251, 252,
> 253, 254, 255, 256, 257, 311, 312, 313, 314, 315, 316, 317, 318, 321

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#2), sequence alignment score = 122.3  
RMSD between 25 pruned atom pairs is 0.077 angstroms; (across all 25 pairs:
0.077)  
  

> select #3/A: 828, 829, 830, 831, 832, 833, 834, 835, 836, 845, 848, 849,
> 850, 851, 852, 853, 854, 886, 889, 890, 891, 892, 893, 894, 895, 896, 897,
> 898, 899, 900, 902 #3/B: 241, 242, 243, 244, 245, 246, 247, 249, 250, 251,
> 252, 253, 254, 255, 256, 257, 311, 312, 313, 314, 315, 316, 317, 318, 321

437 atoms, 438 bonds, 56 residues, 1 model selected  

> color bfactor sel palette alphafold

437 atoms, 56 residues, atom bfactor range 76.4 to 97.9  

> select subtract #3

Nothing selected  

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 827, 828, 829, 830, 831, 832, 833, 834, 835, 836, 837, 838,
> 839, 845, 848, 849, 850, 851, 852, 853, 854, 886, 889, 890, 891, 892, 893,
> 894, 895, 896, 897, 898, 899, 900, 902 #1/B: 95, 96, 97, 235, 236, 238, 239,
> 240, 241, 242, 243, 244, 245, 246, 247, 249, 250, 251, 252, 253, 254, 255,
> 256, 257, 310, 311, 312, 313, 314, 315, 316, 317, 318, 321

540 atoms, 542 bonds, 69 residues, 1 model selected  

> color bfactor sel palette alphafold

540 atoms, 69 residues, atom bfactor range 46 to 97.7  

> matchmaker #1 to #3/B:95, 96, 97, 235, 236, 238, 239, 240, 241, 242, 243,
> 244, 245, 246, 247, 249, 250, 251, 252, 253, 254, 255, 256, 257, 310, 311,
> 312, 313, 314, 315, 316, 317, 318, 321

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#1), sequence alignment score = 156.1  
RMSD between 30 pruned atom pairs is 0.438 angstroms; (across all 34 pairs:
1.799)  
  

> select #2/A: 827, 828, 829, 830, 831, 832, 833, 834, 835, 836, 837, 838,
> 839, 845, 848, 849, 850, 851, 852, 853, 854, 886, 889, 890, 891, 892, 893,
> 894, 895, 896, 897, 898, 899, 900, 902 #2/B: 95, 96, 97, 235, 236, 238, 239,
> 240, 241, 242, 243, 244, 245, 246, 247, 249, 250, 251, 252, 253, 254, 255,
> 256, 257, 310, 311, 312, 313, 314, 315, 316, 317, 318, 321

536 atoms, 538 bonds, 69 residues, 1 model selected  

> color bfactor sel palette alphafold

536 atoms, 69 residues, atom bfactor range 52.2 to 97.7  

> matchmaker #2 to #3/B:95, 96, 97, 235, 236, 238, 239, 240, 241, 242, 243,
> 244, 245, 246, 247, 249, 250, 251, 252, 253, 254, 255, 256, 257, 310, 311,
> 312, 313, 314, 315, 316, 317, 318, 321

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0010269_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0010269_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#2), sequence alignment score = 161  
RMSD between 31 pruned atom pairs is 0.308 angstroms; (across all 34 pairs:
1.395)  
  

> select #3/A: 827, 828, 829, 830, 831, 832, 833, 834, 835, 836, 837, 838,
> 839, 845, 848, 849, 850, 851, 852, 853, 854, 886, 889, 890, 891, 892, 893,
> 894, 895, 896, 897, 898, 899, 900, 902 #3/B: 95, 96, 97, 235, 236, 238, 239,
> 240, 241, 242, 243, 244, 245, 246, 247, 249, 250, 251, 252, 253, 254, 255,
> 256, 257, 310, 311, 312, 313, 314, 315, 316, 317, 318, 321

537 atoms, 539 bonds, 69 residues, 1 model selected  

> color bfactor sel palette alphafold

537 atoms, 69 residues, atom bfactor range 52.8 to 97.9  

> select subtract #3

Nothing selected  

> show #2 models

> hide #3 models

> show #3 models

> hide #3 models

> show #1 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #1 models

> show #1 models

> hide #1 models

> show #3 models

> hide #2 models

Alignment identifier is 1  
Alignment identifier is 1/B  
Alignment identifier is 2/B  
Alignment identifier is 3/B  
Alignment identifier is 1  
Alignment identifier is 1/B  
Alignment identifier is 2/B  
Destroying pre-existing alignment with identifier 3/B  
Alignment identifier is 3/B  

> color #3 bychain

> color #3 bypolymer

> color #3 bychain

> undo

[Repeated 1 time(s)]

> color #3 bychain

> undo

> show #2 models

> hide #3 models

> hide #2 models

> show #3 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #1 models

> hide #3 models

> show #3 models

> hide #1 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #1 models

> hide #1 models

> show #1 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #3 models

> hide #1 models

> show #1 models

> hide #1 models

> show #1 models

> hide #1 models

> hide #2 models

> show #3 models

> show #2 models

> hide #3 models

> show #1 models

> hide #2 models

> select /B:27,237,241,387

81 atoms, 69 bonds, 12 residues, 3 models selected  

> color sel red

> hide #1 models

> show #2 models

> show #3 models

> hide #2 models

> select add #3

10562 atoms, 10782 bonds, 1370 residues, 3 models selected  

> select add #2

21042 atoms, 21494 bonds, 2728 residues, 3 models selected  

> select subtract #2

10542 atoms, 10766 bonds, 1366 residues, 2 models selected  

> select add #1

21026 atoms, 21482 bonds, 2724 residues, 2 models selected  

> select subtract #1

10506 atoms, 10734 bonds, 1362 residues, 1 model selected  

> select subtract #3

Nothing selected  

> show #2 models

> hide #3 models

> hide #2 models

> show #3 models

> show #2 models

> hide #2 models

> show #2 models

> show #1 models

> hide #3 models

> hide #1 models

> show #3 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #1 models

> show #2 models

> hide #1 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> hide #3 models

> show #3 models

> hide #3 models

> show #3 models

> hide #3 models

> show #3 models

> show #2 models

> hide #2 models

> show #2 models

> hide #3 models

> show #3 models

> show #1 models

> hide #2 models

> hide #3 models

> close

> open "/Users/ahramkim/Library/CloudStorage/Dropbox/EB-AR/AR/Image Lab (Bio-
> RaD)/Alphafold/20230626_kinase_MAPK_mutation/mutation_pdb/ksr/FBgn0015402___FBgn0003079_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb"

Chain information for
FBgn0015402___FBgn0003079_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb
#1  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open "/Users/ahramkim/Library/CloudStorage/Dropbox/EB-AR/AR/Image Lab (Bio-
> RaD)/Alphafold/20230626_kinase_MAPK_mutation/mutation_pdb/ksr/FBgn0015402___FBgn0003079_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb"

Chain information for
FBgn0015402___FBgn0003079_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb
#2  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> open "/Users/ahramkim/Library/CloudStorage/Dropbox/EB-AR/AR/Image Lab (Bio-
> RaD)/Alphafold/20230626_kinase_MAPK_mutation/mutation_pdb/ksr/FBgn0015402___FBgn0003079_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_000.pdb"

Chain information for
FBgn0015402___FBgn0003079_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_000.pdb
#3  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> color #1 white

> color #2 white

> color #3 white

> select #1/A: 31, 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
> 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700,
> 701, 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753,
> 754, 755, 770, 771, 772, 773, 776, 782, 783, 785, 786, 787, 788, 789, 790,
> 791, 793, 794, 809, 810, 811, 812, 838, 839, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 933, 934, 937 #1/B: 19,
> 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40,
> 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 60, 62, 66,
> 226, 228, 229, 230, 231, 250, 420, 421, 422, 448, 449, 450, 451, 452, 478,
> 479, 480, 481, 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533,
> 534, 535, 536, 537, 538, 539, 541, 542, 558, 559, 680, 683, 714, 715, 716

1446 atoms, 1439 bonds, 175 residues, 1 model selected  

> color bfactor sel palette alphafold

1446 atoms, 175 residues, atom bfactor range 15.2 to 98.1  

> matchmaker #1 to #3/B:19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32,
> 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53,
> 54, 55, 56, 57, 60, 62, 66, 226, 228, 229, 230, 231, 250, 420, 421, 422,
> 448, 449, 450, 451, 452, 478, 479, 480, 481, 482, 483, 484, 487, 488, 489,
> 490, 501, 502, 503, 531, 533, 534, 535, 536, 537, 538, 539, 541, 542, 558,
> 559, 680, 683, 714, 715, 716

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0003079_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0003079_phosphomimetic_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#1), sequence alignment score = 449  
RMSD between 33 pruned atom pairs is 0.130 angstroms; (across all 84 pairs:
18.662)  
  

> select #2/A: 31, 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
> 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700,
> 701, 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753,
> 754, 755, 770, 771, 772, 773, 776, 782, 783, 785, 786, 787, 788, 789, 790,
> 791, 793, 794, 809, 810, 811, 812, 838, 839, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 933, 934, 937 #2/B: 19,
> 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40,
> 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 60, 62, 66,
> 226, 228, 229, 230, 231, 250, 420, 421, 422, 448, 449, 450, 451, 452, 478,
> 479, 480, 481, 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533,
> 534, 535, 536, 537, 538, 539, 541, 542, 558, 559, 680, 683, 714, 715, 716

1446 atoms, 1439 bonds, 175 residues, 1 model selected  

> color bfactor sel palette alphafold

1446 atoms, 175 residues, atom bfactor range 45.7 to 98.1  

> matchmaker #2 to #3/B:19, 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32,
> 33, 34, 35, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53,
> 54, 55, 56, 57, 60, 62, 66, 226, 228, 229, 230, 231, 250, 420, 421, 422,
> 448, 449, 450, 451, 452, 478, 479, 480, 481, 482, 483, 484, 487, 488, 489,
> 490, 501, 502, 503, 531, 533, 534, 535, 536, 537, 538, 539, 541, 542, 558,
> 559, 680, 683, 714, 715, 716

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
FBgn0015402___FBgn0003079_unrelaxed_rank_001_alphafold2_multimer_v3_model_2_seed_000.pdb,
chain B (#3) with
FBgn0015402___FBgn0003079_phosphomutant_unrelaxed_rank_001_alphafold2_multimer_v3_model_5_seed_000.pdb,
chain B (#2), sequence alignment score = 456.2  
RMSD between 34 pruned atom pairs is 0.457 angstroms; (across all 84 pairs:
19.484)  
  

> select #3/A: 31, 32, 35, 36, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50,
> 53, 54, 55, 56, 57, 58, 59, 60, 61, 64, 71, 75, 671, 672, 698, 699, 700,
> 701, 702, 729, 730, 731, 732, 733, 734, 735, 737, 738, 739, 740, 741, 753,
> 754, 755, 770, 771, 772, 773, 776, 782, 783, 785, 786, 787, 788, 789, 790,
> 791, 793, 794, 809, 810, 811, 812, 838, 839, 886, 887, 888, 889, 890, 891,
> 892, 893, 894, 895, 896, 897, 898, 899, 900, 902, 933, 934, 937 #3/B: 19,
> 20, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 37, 38, 39, 40,
> 41, 42, 43, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 60, 62, 66,
> 226, 228, 229, 230, 231, 250, 420, 421, 422, 448, 449, 450, 451, 452, 478,
> 479, 480, 481, 482, 483, 484, 487, 488, 489, 490, 501, 502, 503, 531, 533,
> 534, 535, 536, 537, 538, 539, 541, 542, 558, 559, 680, 683, 714, 715, 716

1446 atoms, 1439 bonds, 175 residues, 1 model selected  

> color bfactor sel palette alphafold

1446 atoms, 175 residues, atom bfactor range 52.2 to 98.2  

> select subtract #3

Nothing selected  

> hide #1 models

> hide #2 models




OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple

Python: 3.11.2
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,3
      Model Number: Z15H00105LL/A
      Chip: Apple M1 Pro
      Total Number of Cores: 10 (8 performance and 2 efficiency)
      Memory: 32 GB
      System Firmware Version: 8422.121.1
      OS Loader Version: 8422.121.1

Software:

    System Software Overview:

      System Version: macOS 13.4.1 (c) (22F770820d)
      Kernel Version: Darwin 22.5.0
      Time since boot: 14 days, 2 minutes

Graphics/Displays:

    Apple M1 Pro:

      Chipset Model: Apple M1 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 16
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        LG HDR 4K:
          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal
        HP VH240a:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 0.10.0
    certifi: 2022.12.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.11
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.46
    ChimeraX-AtomicLibrary: 10.0.7
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.3
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.dev202306282227
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.2
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.2
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.4
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.2
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.9
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.30
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.1.0
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.40.0
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.9.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2023.3.16
    imagesize: 1.4.1
    ipykernel: 6.23.2
    ipython: 8.14.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.2.0
    jupyter-core: 5.3.1
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.3
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.8.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.6
    PyOpenGL-accelerate: 3.1.6
    pyparsing: 3.1.0
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.1.0
    qtconsole: 5.4.3
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.9.3
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.8.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.2
    traitlets: 5.9.0
    typing-extensions: 4.7.0
    tzdata: 2023.3
    urllib3: 2.0.3
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7

[Eric Pettersen]

Reported by Ah-Ram Kim

[Tom Goddard]

I've seen this before. In testing I observe that the mouse wheel zoom works when I first start ChimeraX 1.6 or daily build, but then stops working as soon as I do a 2-finger drag (rotation) with the trackpad. I'll investigate.

[Tom Goddard]

Fixed in tonight's daily build (dated August 8, 2023).

The Mac trackpad generates scroll wheel events on 2-finger drag and we need to ignore those because 2-finger drag does rotation. In the past the Qt window toolkit could not distinguish between those trackpad scroll events and mouse scroll events, so ChimeraX deliberately through away all scroll events after you use the multi-touch trackpad. But in current Qt the mouse scroll events can be distinguished from the trackpad scroll events so I changed the code to keep the mouse scroll events.

[Ah-Ram_Kim@…]

Hi,

Thank you very much for quick fix!

I have one suggestion about default color choice for ‘color by chain’. The icon for ‘color by chain’ is pink to purple.
[cid:b1ab9c37-6e5b-41c1-bc1a-fb77ba78c97b@namprd07.prod.outlook.com]

So, I thought that pink was used for /A model and purple was used for /B model. But when it was used for dimeric structure, purple was used for /A and pink was used for /B, which was somewhat unexpected.
[cid:ed7c8807-ba75-4e23-b648-b0506591ba86@namprd07.prod.outlook.com]
[cid:d04a3a44-bc19-4344-ab93-6578d27d207f@namprd07.prod.outlook.com]

(/A model uses purple and /B model uses pink).

Matching color order for icon and using color for dimeric structure will be more intuitive and a little bit more helpful for beginner.

Best regards,
Ah-Ram

>
>
>
>
>

[Ah-Ram_Kim@…]

Added by email2trac

[Ah-Ram_Kim@…]

Added by email2trac

[Ah-Ram_Kim@…]

Added by email2trac

[Ah-Ram_Kim@…]

Hi,

Thank you very much for quick fix!

I have one suggestion about default color choice for ‘color by chain’. The icon for ‘color by chain’ is pink to purple.
[cid:92e7df69-6954-4b0c-a2cf-c7952353b3db@namprd07.prod.outlook.com]

So, I thought that pink was used for /A model and purple was used for /B model. But when it was used for dimeric structure, purple was used for /A and pink was used for /B, which was somewhat unexpected.
[cid:73c6f33a-4e83-4897-9afe-a16195c588f5@namprd07.prod.outlook.com]
[cid:9bbe6656-b203-4322-8e16-a4005bbc0175@namprd07.prod.outlook.com]

(/A model uses purple and /B model uses pink).

Matching color order for icon and using color for dimeric structure will be more intuitive and a little bit more helpful for beginner.

Best regards,
Ah-Ram

>
>
>
>
>

[Ah-Ram_Kim@…]

Added by email2trac

[Ah-Ram_Kim@…]

Added by email2trac

[Ah-Ram_Kim@…]

Added by email2trac