Truncated HIS residue

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22621
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: access violation

Thread 0x00012650 (most recent call first):
  File "F:\ChimeraX 1.3\bin\lib\site-packages\OpenGL\GL\VERSION\GL_1_5.py", line 125 in glBufferSubData
  File "F:\ChimeraX 1.3\bin\lib\site-packages\chimerax\graphics\opengl.py", line 2682 in update_buffer_data
Windows fatal exception: access violation

===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 7xj3

7xj3 title:  
Structure of human TRPV3 [more info...]  
  
Chain information for 7xj3 #1  
---  
Chain | Description | UniProt  
A B C D | fusion of transient receptor potential cation channel subfamily V
member 3 and 3C-GFP | B2KYM6_HUMAN  
  
Non-standard residues in 7xj3 #1  
---  
6OU — [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-
propan-2-yl] (~{Z})-octadec-9-enoate  
  
Drag select of 6 residues, 1 pseudobonds  
Drag select of 17 residues  

> select up

343 atoms, 342 bonds, 1 pseudobond, 59 residues, 2 models selected  

> select up

9251 atoms, 9439 bonds, 1 pseudobond, 1222 residues, 2 models selected  

> hide sel cartoons

> hide sel atoms

> select /D:645

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select clear

Drag select of 764 residues, 2 pseudobonds  

> select clear

Drag select of 706 residues, 2 pseudobonds  

> hide sel cartoons

Drag select of 1 residues  

> select clear

Drag select of 39 atoms, 145 residues, 2 pseudobonds, 36 bonds  

> select up

1572 atoms, 1613 bonds, 2 pseudobonds, 194 residues, 2 models selected  

> hide sel cartoons

> hide sel atoms

Drag select of 28 atoms, 167 residues, 3 pseudobonds, 26 bonds  

> select up

3129 atoms, 3212 bonds, 5 pseudobonds, 387 residues, 2 models selected  

> hide sel cartoons

> hide sel atoms

> select clear

Drag select of 5 atoms, 4 bonds  

> select up

9 atoms, 8 bonds, 1 residue, 1 model selected  

> hide sel cartoons

> hide sel atoms

> select add /D:677

17 atoms, 15 bonds, 2 residues, 1 model selected  

> select add /B:672

25 atoms, 22 bonds, 3 residues, 1 model selected  

> select add /B:660

32 atoms, 28 bonds, 4 residues, 1 model selected  

> select add /D:662

39 atoms, 34 bonds, 5 residues, 1 model selected  

> select up

933 atoms, 948 bonds, 111 residues, 1 model selected  

> select up

9242 atoms, 9432 bonds, 1220 residues, 1 model selected  

> select down

933 atoms, 948 bonds, 111 residues, 1 model selected  

> select add /B:640

937 atoms, 951 bonds, 112 residues, 1 model selected  

> select add /D:640

941 atoms, 954 bonds, 113 residues, 1 model selected  

> select up

1103 atoms, 1118 bonds, 133 residues, 1 model selected  

> select down

941 atoms, 954 bonds, 113 residues, 1 model selected  

> select down

941 atoms, 954 bonds, 113 residues, 1 model selected  

> select down

941 atoms, 954 bonds, 113 residues, 1 model selected  

> select down

941 atoms, 954 bonds, 113 residues, 1 model selected  

> select clear

> select add /D:674

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select add /B:671

16 atoms, 14 bonds, 2 residues, 1 model selected  

> select up

612 atoms, 616 bonds, 74 residues, 1 model selected  

> select clear

Drag select of 19 residues  
Drag select of 27 residues  

> select clear

Drag select of 27 residues  

> select up

556 atoms, 562 bonds, 69 residues, 1 model selected  

> select down

239 atoms, 27 residues, 1 model selected  

> hide sel cartoons

Drag select of 24 residues  

> hide sel cartoons

Drag select of 1 residues  

> hide sel cartoons

Drag select of 96 residues  

> mlp sel

Map values for surface "7xj3_B SES surface": minimum -27.88, mean -1.453,
maximum 23.25  
Map values for surface "7xj3_D SES surface": minimum -27.37, mean -1.355,
maximum 23.34  
To also show corresponding color key, enter the above mlp command and add key
true  

> select clear

> coulombic

The following residues are missing heavy (non-hydrogen) atoms, which may
result in inaccurate electrostatics:  
/A ARG 118  
/A LEU 119  
/A LYS 120  
/A LYS 121  
/A ARG 122  
/A ILE 123  
/A SER 128  
/A GLU 129  
/A CYS 131  
/A VAL 132  
/A GLU 133  
/A GLU 134  
/A GLU 137  
/A LEU 138  
/A LEU 139  
/A VAL 140  
/A GLU 141  
/A LEU 142  
/A GLN 143  
/A GLU 144  
/A LEU 145  
/A CYS 146  
/A ARG 147  
/A ARG 148  
/A ARG 149  
/A LYS 161  
/A SER 165  
/A LYS 174  
/A ASN 182  
/A LYS 184  
/A GLU 185  
/A ARG 188  
/A GLU 195  
/A GLU 196  
/A ASP 198  
/A ARG 202  
/A GLU 207  
/A THR 209  
/A GLU 210  
/A GLU 211  
/A GLU 224  
/A ASP 229  
/A LYS 246  
/A ASN 251  
/A LYS 253  
/A TYR 254  
/A GLN 255  
/A HIS 256  
/A GLU 257  
/A GLU 283  
/A GLU 285  
/A GLN 286  
/A ASP 309  
/A LYS 311  
/A ASN 314  
/A ASP 315  
/A ASP 322  
/A GLU 332  
/A THR 335  
/A LYS 350  
/A GLU 355  
/A GLU 367  
/A LYS 368  
/A ASP 400  
/A THR 411  
/A ASN 412  
/A ASP 414  
/A ASN 415  
/A HIS 417  
/A GLU 418  
/A GLU 423  
/A TRP 481  
/A LEU 482  
/A LYS 500  
/A PHE 506  
/A SER 518  
/A ASP 519  
/A ILE 534  
/A PHE 538  
/A LYS 611  
/A ASN 616  
/A LYS 617  
/A ASP 618  
/A SER 624  
/A ILE 700  
/A GLU 709  
/A ARG 716  
/A MET 717  
/A GLU 719  
/A CYS 721  
/A LYS 722  
/A GLU 725  
/A ASP 726  
/A ASP 727  
/A ASN 735  
/A GLU 736  
/A LYS 738  
/A GLU 741  
/A LYS 743  
/A THR 744  
/A ASN 750  
/A GLU 751  
/A ASP 752  
/B ARG 118  
/B LEU 119  
/B LYS 120  
/B LYS 121  
/B ARG 122  
/B ILE 123  
/B SER 128  
/B GLU 129  
/B CYS 131  
/B VAL 132  
/B GLU 133  
/B GLU 134  
/B GLU 137  
/B LEU 138  
/B LEU 139  
/B VAL 140  
/B GLU 141  
/B LEU 142  
/B GLN 143  
/B GLU 144  
/B LEU 145  
/B CYS 146  
/B ARG 147  
/B ARG 148  
/B ARG 149  
/B LYS 161  
/B SER 165  
/B LYS 174  
/B ASN 182  
/B LYS 184  
/B GLU 185  
/B ARG 188  
/B GLU 195  
/B GLU 196  
/B ASP 198  
/B ARG 202  
/B GLU 207  
/B THR 209  
/B GLU 210  
/B GLU 211  
/B GLU 224  
/B ASP 229  
/B LYS 246  
/B ASN 251  
/B LYS 253  
/B TYR 254  
/B GLN 255  
/B HIS 256  
/B GLU 257  
/B GLU 283  
/B GLU 285  
/B GLN 286  
/B ASP 309  
/B LYS 311  
/B ASN 314  
/B ASP 315  
/B ASP 322  
/B GLU 332  
/B THR 335  
/B LYS 350  
/B GLU 355  
/B GLU 367  
/B LYS 368  
/B ASP 400  
/B THR 411  
/B ASN 412  
/B ASP 414  
/B ASN 415  
/B HIS 417  
/B GLU 418  
/B GLU 423  
/B TRP 481  
/B LEU 482  
/B LYS 500  
/B PHE 506  
/B SER 518  
/B ASP 519  
/B ILE 534  
/B PHE 538  
/B ASN 616  
/B LYS 617  
/B ASP 618  
/B SER 624  
/B ILE 700  
/B GLU 709  
/B ARG 716  
/B MET 717  
/B GLU 719  
/B CYS 721  
/B LYS 722  
/B GLU 725  
/B ASP 726  
/B ASP 727  
/B ASN 735  
/B GLU 736  
/B LYS 738  
/B GLU 741  
/B LYS 743  
/B THR 744  
/C ARG 118  
/C LEU 119  
/C LYS 120  
/C LYS 121  
/C ARG 122  
/C ILE 123  
/C SER 128  
/C GLU 129  
/C CYS 131  
/C VAL 132  
/C GLU 133  
/C GLU 134  
/C GLU 137  
/C LEU 138  
/C LEU 139  
/C VAL 140  
/C GLU 141  
/C LEU 142  
/C GLN 143  
/C GLU 144  
/C LEU 145  
/C CYS 146  
/C ARG 147  
/C ARG 148  
/C ARG 149  
/C LYS 161  
/C SER 165  
/C LYS 174  
/C ASN 182  
/C LYS 184  
/C GLU 185  
/C ARG 188  
/C GLU 195  
/C GLU 196  
/C ASP 198  
/C ARG 202  
/C GLU 207  
/C THR 209  
/C GLU 210  
/C GLU 211  
/C GLU 224  
/C ASP 229  
/C LYS 246  
/C ASN 251  
/C LYS 253  
/C TYR 254  
/C GLN 255  
/C HIS 256  
/C GLU 257  
/C GLU 283  
/C GLU 285  
/C GLN 286  
/C ASP 309  
/C LYS 311  
/C ASN 314  
/C ASP 315  
/C ASP 322  
/C GLU 332  
/C THR 335  
/C LYS 350  
/C GLU 355  
/C GLU 367  
/C LYS 368  
/C ASP 400  
/C THR 411  
/C ASN 412  
/C ASP 414  
/C ASN 415  
/C HIS 417  
/C GLU 418  
/C GLU 423  
/C TRP 481  
/C LEU 482  
/C LYS 500  
/C PHE 506  
/C SER 518  
/C ASP 519  
/C ILE 534  
/C PHE 538  
/C ASN 616  
/C LYS 617  
/C ASP 618  
/C SER 624  
/C ILE 700  
/C GLU 709  
/C ARG 716  
/C MET 717  
/C GLU 719  
/C CYS 721  
/C LYS 722  
/C GLU 725  
/C ASP 726  
/C ASP 727  
/C ASN 735  
/C GLU 736  
/C LYS 738  
/C GLU 741  
/C LYS 743  
/C THR 744  
/C ASN 750  
/C GLU 751  
/C ASP 752  
/D ARG 118  
/D LEU 119  
/D LYS 120  
/D LYS 121  
/D ARG 122  
/D ILE 123  
/D SER 128  
/D GLU 129  
/D CYS 131  
/D VAL 132  
/D GLU 133  
/D GLU 134  
/D GLU 137  
/D LEU 138  
/D LEU 139  
/D VAL 140  
/D GLU 141  
/D LEU 142  
/D GLN 143  
/D GLU 144  
/D LEU 145  
/D CYS 146  
/D ARG 147  
/D ARG 148  
/D ARG 149  
/D LYS 161  
/D SER 165  
/D LYS 174  
/D ASN 182  
/D LYS 184  
/D GLU 185  
/D ARG 188  
/D GLU 195  
/D GLU 196  
/D ASP 198  
/D ARG 202  
/D GLU 207  
/D THR 209  
/D GLU 210  
/D GLU 211  
/D GLU 224  
/D ASP 229  
/D LYS 246  
/D ASN 251  
/D LYS 253  
/D TYR 254  
/D GLN 255  
/D HIS 256  
/D GLU 257  
/D GLU 283  
/D GLU 285  
/D GLN 286  
/D ASP 309  
/D LYS 311  
/D ASN 314  
/D ASP 315  
/D ASP 322  
/D GLU 332  
/D THR 335  
/D LYS 350  
/D GLU 355  
/D GLU 367  
/D LYS 368  
/D ASP 400  
/D THR 411  
/D ASN 412  
/D ASP 414  
/D ASN 415  
/D HIS 417  
/D GLU 418  
/D GLU 423  
/D TRP 481  
/D LEU 482  
/D LYS 500  
/D PHE 506  
/D SER 518  
/D ASP 519  
/D ILE 534  
/D PHE 538  
/D LYS 611  
/D ASN 616  
/D LYS 617  
/D ASP 618  
/D SER 624  
/D ILE 700  
/D GLU 709  
/D ARG 716  
/D MET 717  
/D GLU 719  
/D CYS 721  
/D LYS 722  
/D GLU 725  
/D ASP 726  
/D ASP 727  
/D ASN 735  
/D GLU 736  
/D LYS 738  
/D GLU 741  
/D LYS 743  
/D THR 744  
/D ASN 750  
/D GLU 751  
/D ASP 752  

Using Amber 20 recommended default charges and atom types for standard
residues  
Assigning partial charges to residue HIS (net charge -3) with am1-bcc method  
Running ANTECHAMBER command: F:/ChimeraX 1.3/bin/amber20/bin/antechamber -ek
qm_theory='AM1', -i
C:\Users\C451~1\AppData\Local\Temp\tmppnzc1k90\ante.in.mol2 -fi mol2 -o
C:\Users\C451~1\AppData\Local\Temp\tmppnzc1k90\ante.out.mol2 -fo mol2 -c bcc
-nc -3 -j 5 -s 2 -dr n  
(HIS) ``  
(HIS) `Welcome to antechamber 20.0: molecular input file processor.`  
(HIS) ``  
(HIS) `Info: Finished reading file
(C:\Users\C451~1\AppData\Local\Temp\tmppnzc1k90\ante.in.mol2); atoms read
(19), bonds read (18).`  
(HIS) `Info: Determining atomic numbers from atomic symbols which are case
sensitive.`  
(HIS) `Running: "F:/ChimeraX 1.3/bin/amber20/bin/bondtype" -j part -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac`  
(HIS) `bash.exe: warning: could not find /tmp, please create!`  
(HIS) ``  
(HIS) ``  
(HIS) `Running: "F:/ChimeraX 1.3/bin/amber20/bin/atomtype" -i
ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff`  
(HIS) `bash.exe: warning: could not find /tmp, please create!`  
(HIS) `Info: Total number of electrons: 78; net charge: -3`  
(HIS) ``  
(HIS) `Running: "F:/ChimeraX 1.3/bin/amber20/bin/sqm" -O -i sqm.in -o sqm.out`  
(HIS) `bash.exe: warning: could not find /tmp, please create!`  
(HIS) `/usr/bin/antechamber: Fatal Error!`  
(HIS) `Cannot properly run ""F:/ChimeraX 1.3/bin/amber20/bin/sqm" -O -i sqm.in
-o sqm.out".`  
Failure running ANTECHAMBER for residue HIS Check reply log for details  

> select #1

18493 atoms, 18871 bonds, 16 pseudobonds, 2442 residues, 2 models selected  

> show sel cartoons

> select clear

> hide surfaces

Drag select of 5 residues  

> select /C:126

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select add /C:674

13 atoms, 11 bonds, 2 residues, 1 model selected  

> select add /B:678

17 atoms, 14 bonds, 3 residues, 1 model selected  

> select add /A:681

24 atoms, 20 bonds, 4 residues, 2 models selected  

> select add /D:678

28 atoms, 23 bonds, 5 residues, 2 models selected  

> select up

1291 atoms, 1299 bonds, 160 residues, 3 models selected  

> select add /A:635

1299 atoms, 1306 bonds, 161 residues, 3 models selected  

> select add /C:634

1308 atoms, 1314 bonds, 162 residues, 3 models selected  

> select add /B:634

1317 atoms, 1322 bonds, 163 residues, 3 models selected  

> select add /D:635

1325 atoms, 1329 bonds, 164 residues, 3 models selected  

> select up

1747 atoms, 1759 bonds, 220 residues, 3 models selected  

> select up

18493 atoms, 18871 bonds, 2442 residues, 3 models selected  

> select down

1747 atoms, 1759 bonds, 220 residues, 3 models selected  

> select add /C:639

1755 atoms, 1766 bonds, 221 residues, 3 models selected  

> select add /B:639

1763 atoms, 1773 bonds, 222 residues, 3 models selected  

> select add /D:639

1771 atoms, 1780 bonds, 223 residues, 3 models selected  

> select add /A:639

1779 atoms, 1787 bonds, 224 residues, 3 models selected  

> select up

2087 atoms, 2099 bonds, 264 residues, 3 models selected  

> mlp sel

Map values for surface "7xj3_A SES surface": minimum -27.33, mean -1.389,
maximum 23.11  
Map values for surface "7xj3_B SES surface": minimum -27.88, mean -1.453,
maximum 23.25  
Map values for surface "7xj3_C SES surface": minimum -27.98, mean -1.344,
maximum 23.61  
Map values for surface "7xj3_D SES surface": minimum -27.37, mean -1.355,
maximum 23.34  
To also show corresponding color key, enter the above mlp command and add key
true  

> select #1

18493 atoms, 18871 bonds, 16 pseudobonds, 2442 residues, 2 models selected  

> ~select #1

4 models selected  

> select #1

18493 atoms, 18871 bonds, 16 pseudobonds, 2442 residues, 2 models selected  

> hide sel cartoons

> show sel cartoons

> select clear

> view orient

> ui tool show "Side View"

> view orient

> lighting soft

> graphics silhouettes true

> transparency 70

> transparency 50

> transparency 30

> graphics silhouettes false


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 - Build 30.0.101.1404
OpenGL renderer: Intel(R) Iris(R) Xe Graphics
OpenGL vendor: Intel
Manufacturer: HUAWEI
Model: MRG-WXX
OS: Microsoft Windows 11 家庭中文版 (Build 22621)
Memory: 16,952,647,680
MaxProcessMemory: 137,438,953,344
CPU: 8 11th Gen Intel(R) Core(TM) i5-1155G7 @ 2.50GHz
OSLanguage: zh-CN
Locale: ('zh_CN', 'cp65001')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1