![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Apr 27, 2022:
- 11:12 PM Ticket #6731 (Hyperlinks give "Your Internet connection is blocked") created by
- […]
- 8:54 PM Ticket #6067 (Update RCSB biounit fetch to new URLs if needed) closed by
- fixed: Looks like the assembly file fetch should continue to work.
- 8:47 PM Ticket #6469 (AlphaFold vs. JAX) closed by
- fixed: I also updated the ChimeraX 1.4 daily build so it will not be broken …
- 8:44 PM Ticket #6662 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) closed by
- nonchimerax: The usual Intel Mac graphics driver crash.
- 8:42 PM Ticket #6729 (Recording movie: OSError: [Errno 28] No space left on device) closed by
- not a bug
- 8:35 PM Ticket #6437 (Windows fatal exception: code 0x800706ba. No crash) closed by
- not a bug: It looks like the actual crashes associated with the Open dialog and …
- 8:33 PM Ticket #6613 (Crash Mac X11 → Linux) closed by
- can't reproduce: No response from reporter.
- 8:31 PM Ticket #6670 (AlphaFold PAE domain coloring IndexError) closed by
- fixed: Fixed by making better error message. Made ticket #6730 to try to …
- 8:30 PM Ticket #6730 (Make AlphaFold PAE plot coloring work even when residues deleted) created by
- If residues of an AlphaFold structure are deleted then the PAE plot …
- 8:05 PM Ticket #6726 (volume command transparency 0 option hides image) closed by
- fixed: Fixed. Setting transparency to 0 was failing to set the image drawing …
- 7:46 PM Ticket #6729 (Recording movie: OSError: [Errno 28] No space left on device) created by
- […]
- 4:43 PM Ticket #6695 (Problem reading PAE file) closed by
- fixed: Fixed. Gave clear error message if JSON data does not contain …
- 3:53 PM Ticket #6715 (Meeting command broken with Qt 6: AttributeError: ...) closed by
- fixed: Fixed. QAbstractSocket changed in Qt 6 renaming the error signal to …
- 1:34 PM Ticket #6728 (Allow opening a session file while keep existing session models) created by
- Want to be able to merge sessions. Begin forwarded message: From: …
- 1:31 PM Ticket #6727 (Make transparency command work on volume image display) created by
- Currently the transparency command does not work on volume image data. …
- 1:26 PM Ticket #6726 (volume command transparency 0 option hides image) created by
- […]
- 1:01 PM Ticket #6725 (Make PAE plot drag select the corresponding residues) created by
- From: "Jan Gebauer" Subject: Identifying residues based on PAE plot? …
- 12:59 PM Ticket #6724 (Color PAE plots using domain colors) created by
- Gerard suggests coloring PAE plots using the domain colors, I guess …
- 12:44 PM Ticket #6713 (Crash when starting RealSense camera, stack overflow getting VR saved ...) closed by
- can't reproduce: Very strange that it gave a stack overflow in Python core ast module …
- 12:40 PM Ticket #6708 (QQuickWidget: Failed to make context current when creating FBO) closed by
- can't reproduce: Interesting. This is on modern graphics RTX 3050 Ti and it appears Qt …
- 12:26 PM 2022-4-28 created by
- 12:25 PM DeveloperMeetings edited by
- (diff)
- 12:02 PM Ticket #6702 (Problem inverting matrix in 'rotate' mouse mode) closed by
- can't reproduce: Never knew that numpy's linagl code could give an access violation …
- 11:44 AM Ticket #6694 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics 655) closed by
- nonchimerax: Unfortunately Intel Mac graphics drivers are very unstable and …
- 11:41 AM Ticket #6693 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by
- can't reproduce: OpenGL error invalid enumerant in …
- 11:37 AM Ticket #6692 (Problem switching in/out of stereo: 'NoneType' object has no attribute ...) closed by
- duplicate: This was fixed 2 months ago in the daily builds when you reported the …
- 11:34 AM Ticket #6690 (Crash making context current while showing selected atoms) closed by
- nonchimerax: Qt bug crashing in make_current().
- 11:30 AM Ticket #6687 (glClear: invalid framebuffer operation) closed by
- nonchimerax: ChimeraX gave an OpenGL graphics error. It also reported something …
- 11:14 AM Ticket #6686 (Crash in ses_surface_geometry) closed by
- can't reproduce: ChimeraX crashed computing a molecular surface. I have not seen this …
- 10:38 AM Ticket #6723 (Drop support for CentOS 7, Ubuntu 16 and 18) created by
- Can we drop ChimeraX 1.4 distributions on older Linux distributions? …
- 10:11 AM Ticket #6722 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:10 AM Ticket #6721 (Crash in garbage collection during new object allocation) closed by
- duplicate: 1.0
- 9:49 AM Ticket #6720 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:14 AM Ticket #6718 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:10 AM Ticket #6717 (Crash in Qt on exit) closed by
- duplicate
- 6:32 AM Ticket #6722 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 6:31 AM Ticket #6721 (Crash in garbage collection during new object allocation) created by
- […]
- 5:14 AM Ticket #6720 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 3:25 AM Ticket #6719 (Block trigger handlers) created by
- […]
Apr 26, 2022:
- 8:28 PM Ticket #6718 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 6:39 PM Training edited by
- (diff)
- 6:39 PM Training edited by
- (diff)
- 6:36 PM Ticket #6717 (Crash in Qt on exit) created by
- […]
- 12:50 PM Ticket #6716 (Blast protein duplicate result-window identifiers (more than one bp1)) created by
- If I open a session file with existing blast results bp1, then run …
- 12:24 PM Ticket #6715 (Meeting command broken with Qt 6: AttributeError: ...) created by
- […]
- 12:23 PM Ticket #6714 (Meeting command: AttributeError: type object 'QHostAddress' has no ...) closed by
- fixed: Fixed. Qt 6 enumeration values were not being put in QNetwork module …
- 11:41 AM Ticket #6714 (Meeting command: AttributeError: type object 'QHostAddress' has no ...) created by
- […]
- 11:38 AM Ticket #6713 (Crash when starting RealSense camera, stack overflow getting VR saved ...) created by
- […]
- 11:18 AM Ticket #6667 (Realign with Clustal Omega not finding high identity alignment) closed by
- fixed: Sending input sequences with gaps apparently trips up Clustal Omega …
- 10:28 AM ChangeLog edited by
- (diff)
- 10:06 AM ChangeLog edited by
- (diff)
- 10:03 AM ChangeLog edited by
- (diff)
- 9:16 AM Ticket #6712 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:14 AM Ticket #6711 (Crash using File→Open on Windows) closed by
- can't reproduce: 1.3
- 9:10 AM Ticket #6710 (Crash in event loop) closed by
- can't reproduce: ChimeraX was using 8GB despite being only in the Quickstart guide (per …
- 9:01 AM Ticket #6709 (Crash in event loop) closed by
- can't reproduce
- 8:56 AM Ticket #6707 (Problem destroying status bar) closed by
- duplicate
- 8:50 AM Ticket #6706 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:48 AM Ticket #6705 (Crash using File→Open on Windows) closed by
- can't reproduce: This one's weird. The Windows crash log is for 1.3, but the Python …
- 8:24 AM Ticket #6712 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 8:22 AM Ticket #6711 (Crash using File→Open on Windows) created by
- […]
- 1:11 AM Ticket #6710 (Crash in event loop) created by
- […]
- 1:03 AM Ticket #6709 (Crash in event loop) created by
- […]
- 12:41 AM Ticket #6708 (QQuickWidget: Failed to make context current when creating FBO) created by
- […]
Apr 25, 2022:
- 11:11 PM Ticket #6707 (Problem destroying status bar) created by
- […]
- 6:03 PM Ticket #6671 (2D arrows problems) closed by
- fixed: Fixed by this commit: …
- 4:56 PM Ticket #6706 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:49 PM Ticket #6643 (suggestions for renaming columns from Blast UniRefN searches) closed by
- fixed: I hope …
- 1:56 PM Ticket #6705 (Crash using File→Open on Windows) created by
- […]
- 1:51 PM Ticket #6704 (Empty "Update Bundles" dialog) created by
- […]
- 12:30 PM Ticket #5241 (Blastprotein: Ambiguous behavior of sequence-only hits) closed by
- fixed
- 12:25 PM Ticket #6688 ('MyPage' object has no attribute 'view') closed by
- fixed: Duplicate of #6637 Should be fixed in today's daily builds.
- 12:00 PM Ticket #6701 (Status bar, QScreen has been deleted) closed by
- duplicate
- 11:34 AM Ticket #6703 (Chimera-like selection behavior for left/right arrow keys) created by
- […]
- 11:25 AM Ticket #6699 (Crash showing yes/no dialog question) closed by
- can't reproduce: Hi Chonnikan, Thanks for reporting this problem. I recommend …
- 11:21 AM Ticket #6698 (Crash in event loop after color bychain) closed by
- duplicate
- 11:20 AM Ticket #6697 (Crash in event loop after color bychain) closed by
- can't reproduce
- 11:03 AM Ticket #6689 (Crash using File→Open on Windows and/or in return statementg) closed by
- can't reproduce: Hi Jonas, Thanks for reporting this problem. It is a pretty rare …
- 10:45 AM Ticket #6684 (No error) closed by
- duplicate
- 10:39 AM Ticket #6682 (Crash using File→Open on Windows) closed by
- can't reproduce: 1.3
- 10:36 AM Ticket #6681 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:32 AM Ticket #6680 (Crash in strlen) closed by
- can't reproduce
- 10:29 AM Ticket #6679 (Unknown crash) closed by
- can't reproduce
- 10:28 AM Ticket #6678 (Crash in event loop) closed by
- can't reproduce
- 7:30 AM Ticket #6702 (Problem inverting matrix in 'rotate' mouse mode) created by
- […]
- 3:25 AM Ticket #6701 (Status bar, QScreen has been deleted) created by
- […]
- 2:45 AM Ticket #6700 (Crash using File→Open on Windows and/or in return statement if folder ...) created by
- […]
Apr 24, 2022:
- 8:45 PM Ticket #6699 (Crash showing yes/no dialog question) created by
- […]
- 6:17 PM Ticket #6698 (Crash in event loop after color bychain) created by
- […]
- 6:17 PM Ticket #6697 (Crash in event loop after color bychain) created by
- […]
Apr 23, 2022:
- 8:10 PM Ticket #6696 (Simplify labeling contacting residues) created by
- […]
- 2:14 AM Ticket #6695 (Problem reading PAE file) created by
- […]
Apr 22, 2022:
- 5:13 PM Ticket #6694 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics 655) created by
- […]
- 1:58 PM Ticket #6693 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by
- […]
- 1:41 PM Ticket #6692 (Problem switching in/out of stereo: 'NoneType' object has no attribute ...) created by
- […]
- 7:00 AM Ticket #6690 (Crash making context current while showing selected atoms) created by
- […]
- 6:55 AM Ticket #6689 (Crash using File→Open on Windows and/or in return statementg) created by
- […]
- 6:08 AM Ticket #6688 ('MyPage' object has no attribute 'view') created by
- […]
- 5:22 AM Ticket #6687 (glClear: invalid framebuffer operation) created by
- […]
- 3:40 AM Ticket #6686 (Crash in ses_surface_geometry) created by
- […]
- 2:15 AM Ticket #6685 (Crash in event loop) created by
- […]
- 2:13 AM Ticket #6684 (No error) created by
- […]
- 2:13 AM Ticket #6683 (No error) created by
- […]
- 1:57 AM Ticket #6682 (Crash using File→Open on Windows) created by
- […]
Apr 21, 2022:
- 11:38 PM Ticket #6449 (Quick Start tutorial links give "Your Internet connection is blocked") closed by
- fixed: Fixed by setting WebAttribute.LocalContentCanAccessRemoteUrls. It's …
- 11:37 PM Ticket #6681 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 10:11 PM Ticket #6680 (Crash in strlen) created by
- […]
- 8:00 PM Ticket #6679 (Unknown crash) created by
- […]
- 5:58 PM Ticket #6678 (Crash in event loop) created by
- […]
- 5:10 PM Ticket #6675 (Problem after 'close' without 'vseries stop') closed by
- can't reproduce: Looks like you opened a volume series, played it, closed, and opened …
- 4:58 PM Ticket #6677 (Hold ChimeraX plugin development training workshop) created by
- Amith Rangarajan in Matt Jacobson's lab is writing ChimeraX python …
- 3:48 PM Ticket #6674 (Graphics crash, macOS 12.3.1, Intel HD Graphics 6000) closed by
- nonchimerax: Unfortunately Apple's graphics drivers on Intel Macs are not very …
- 3:38 PM Ticket #6673 ('Chain' object has no attribute 'match_maps') closed by
- duplicate: This bug was only in that one particular daily build and is fixed now.
- 3:27 PM Dev2022-4-21 edited by
- (diff)
- 3:16 PM Ticket #6672 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 2:56 PM Ticket #1021 (Compute auxiliary secondary structure info) closed by
- fixed: This actually got implemented 9 months ago (ss_info arg to …
- 2:33 PM Ticket #6676 (mac-arm64: Audit pre-requisites and ensure 3rd party binaries are arm64) created by
- 1:30 PM Dev2022-4-21 edited by
- (diff)
- 1:27 PM Dev2022-4-21 edited by
- (diff)
- 12:43 PM 2022-4-21 edited by
- (diff)
- 11:34 AM Ticket #6675 (Problem after 'close' without 'vseries stop') created by
- […]
- 10:19 AM Ticket #6668 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 9:55 AM Ticket #6663 (Crash processing drop event) closed by
- can't reproduce
- 8:47 AM Ticket #6674 (Graphics crash, macOS 12.3.1, Intel HD Graphics 6000) created by
- […] chimeraX_crash.txt
- 8:10 AM Ticket #6673 ('Chain' object has no attribute 'match_maps') created by
- […]
- 5:25 AM Ticket #6672 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 12:05 AM Ticket #6671 (2D arrows problems) created by
- […]
Apr 20, 2022:
- 10:13 PM Ticket #6670 (AlphaFold PAE domain coloring IndexError) created by
- […]
- 9:50 PM Ticket #6669 (This copy of PyQt is unlicensed on macOS arm64) created by
- When I build ChimeraX on my Mac M1 computer with "make install-rbvi" …
- 9:40 PM Ticket #6668 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 7:05 PM Ticket #6667 (Realign with Clustal Omega not finding high identity alignment) created by
- […] align.fasta
- 6:54 PM Ticket #6666 (Sequence realignment error) closed by
- fixed: Works in daily build.
- 6:51 PM Ticket #6666 (Sequence realignment error) created by
- […] align.fasta
- 6:27 PM Ticket #6665 (Allow Uniprot identifiers with isoform specifier in AlphaFold tool) created by
- […]
- 6:23 PM Ticket #6664 (AlphaFold chain table reports wrong "Seen" residues for fusion proteins) created by
- […]
- 6:02 PM Ticket #5241 (Blastprotein: Ambiguous behavior of sequence-only hits) reopened by
- 5:36 PM Ticket #6663 (Crash processing drop event) created by
- […]
- 4:28 PM Ticket #6662 (Graphics crash, macOS 12.3.1, Radeon Pro Vega 64X) created by
- […]
- 1:06 PM Ticket #6661 (Speed up AlphaFold prediction on Colab by fetching sequence databases ...) created by
- […]
- 11:47 AM Ticket #6660 (Run AlphaFold prediction using fasta file) created by
- Would be convenient if the AlphaFold tool could accept a pasted in …
- 11:18 AM Ticket #6659 (Calling [C++: N10atomstruct5ChainE] _cpp_demotion failed) closed by
- can't reproduce
- 11:13 AM Ticket #6659 (Calling [C++: N10atomstruct5ChainE] _cpp_demotion failed) created by
- […]
- 11:12 AM Ticket #6657 (Error opening TIFF file: ValueError: cannot select an axis to squeeze ...) closed by
- can't reproduce: It does not look like ChimeraX crashed. It looks like opening a TIFF …
- 10:02 AM Ticket #6658 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:49 AM Ticket #6656 (Crash creating QWebEngineProfile) closed by
- duplicate
- 9:48 AM Ticket #6655 (Crash using QFileDialog.getSaveFileName) closed by
- can't reproduce: 1.3
- 8:03 AM Ticket #6658 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 5:04 AM Ticket #6657 (Error opening TIFF file: ValueError: cannot select an axis to squeeze ...) created by
- […]
- 1:23 AM Ticket #6656 (Crash creating QWebEngineProfile) created by
- […]
- 1:04 AM Ticket #6655 (Crash using QFileDialog.getSaveFileName) created by
- […]
Apr 19, 2022:
- 7:57 PM Ticket #6654 (Filter out duplicate bug reports) created by
- We have had some bugs that were reported over 100 times. Processing …
- 4:44 PM Ticket #6652 (Failure to parse NR blast results) closed by
- fixed
- 4:43 PM 2022-4-14 edited by
- (diff)
- 4:35 PM Dev2022-4-21 created by
- 4:26 PM 2022-4-21 created by
- 4:25 PM DeveloperMeetings edited by
- (diff)
- 3:04 PM Ticket #6653 (Crash in QMainWindow::removeDockWidget) created by
- […]
- 2:19 PM Ticket #6652 (Failure to parse NR blast results) created by
- […]
- 11:24 AM Ticket #6651 (RFE: allow specifying color gradient as background) created by
- allow specifying a color gradient as the background of the graphics …
- 11:22 AM Ticket #6650 (RFE: allow specifying image from file as background) created by
- allow specifying image (read from file) as the background of the …
- 11:12 AM Ticket #6642 (Cannot restore session that shows blast: unexpected keyword argument ...) closed by
- fixed
- 9:43 AM Ticket #6649 (Fatal Qt error at startup) closed by
- can't reproduce
- 9:39 AM Ticket #6648 (Crash in event loop) closed by
- can't reproduce
- 6:43 AM Ticket #6649 (Fatal Qt error at startup) created by
- […]
- 3:54 AM Ticket #6648 (Crash in event loop) created by
- […]
Apr 18, 2022:
- 6:55 PM ChangeLog edited by
- (diff)
- 6:03 PM Ticket #6645 (Error getting mmCIF templates: URL can't contain control characters) closed by
- duplicate: Duplicate of #6508
- 5:51 PM Ticket #6641 (differences in .cxc execution between 1.1 and 1.4) closed by
- fixed: I hid rapid access before testing the script and the waits did not …
- 5:02 PM Ticket #6647 (animating clipping planes) created by
- […]
- 5:00 PM Ticket #6646 (RFE: show modality of DICOM (medical imaging) data) created by
- It would be useful to make the modality information for each DICOM …
- 4:57 PM Ticket #6645 (Error getting mmCIF templates: URL can't contain control characters) created by
- […]
- 3:45 PM Ticket #6640 (Crash opening .pytest_cache as DICOM) closed by
- can't reproduce: I am a bit mystified why your command log shows trying to open hidden …
- 3:39 PM Ticket #6635 (File history corrupted) closed by
- can't reproduce: Thanks for reporting the problem. I suspect ChimeraX must have …
- 1:37 PM Ticket #6644 (Crash updating log) closed by
- can't reproduce
- 1:22 PM Ticket #6639 (No module named 'pwd') closed by
- duplicate: Hi Paul, Thanks for reporting this problem. It is fixed in the …
- 1:19 PM Ticket #6638 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: Hi Lingyi, Thanks for reporting this problem. We believe it is a bug …
- 1:15 PM Ticket #6637 ('MyPage' object has no attribute 'view') closed by
- duplicate: Hi Shruthi, Thanks for reporting this problem. It is fixed in the …
- 1:01 PM Ticket #6636 (setattr type) closed by
- not a bug: Hi Tristan, Setattr guesses the most natural looking type from the …
- 11:53 AM Ticket #6644 (Crash updating log) created by
- […]
- 11:51 AM Ticket #6633 (Non-UTF8 character in SDF file) closed by
- duplicate
- 11:48 AM Ticket #6632 (Non-UTF8 character in SDF file) closed by
- can't reproduce: Would need the SDF to judge validity of report and possible remedies.
- 11:45 AM Ticket #6643 (suggestions for renaming columns from Blast UniRefN searches) created by
- The contents of the "Name" field are not informative. What do you …
- 11:37 AM Ticket #6630 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 11:36 AM Ticket #6629 (Crash redrawing widget) closed by
- can't reproduce: Old Qt
- 11:34 AM Ticket #6628 (IPython crash) closed by
- duplicate
- 11:33 AM Ticket #6627 (IPython crash) closed by
- can't reproduce: User was undoubtedly trying to do something fancy, though I have no …
- 11:29 AM Ticket #6625 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 11:23 AM Ticket #6642 (Cannot restore session that shows blast: unexpected keyword argument ...) created by
- […]
- 10:54 AM Ticket #6641 (differences in .cxc execution between 1.1 and 1.4) created by
- I've attached a script based on the one from ticket #6624 -- the only …
- 10:33 AM Ticket #6624 ('Sequence' object has no attribute 'structure') closed by
- duplicate: Hi Chris, Thanks for reporting this problem. There are two ways you …
- 9:48 AM Ticket #6623 (Error assigning hydrogen charges) closed by
- duplicate: Hydrogens no longer charged this way
- 9:44 AM Ticket #6615 (Crash copying custom attributes for Crystal Contacts) closed by
- can't reproduce
- 9:10 AM Ticket #6640 (Crash opening .pytest_cache as DICOM) created by
- […]
- 7:44 AM Ticket #6639 (No module named 'pwd') created by
- […]
- 5:20 AM Ticket #6638 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 5:02 AM Ticket #6637 ('MyPage' object has no attribute 'view') created by
- […]
Apr 17, 2022:
- 5:31 AM Ticket #6636 (setattr type) created by
- […]
- 5:09 AM Ticket #6635 (File history corrupted) created by
- […]
- 1:14 AM Ticket #6634 (Problem removing existing sequence viewer during session restore) created by
- […]
Apr 16, 2022:
- 5:03 PM Ticket #6633 (Non-UTF8 character in SDF file) created by
- […]
- 4:42 PM Ticket #6632 (Non-UTF8 character in SDF file) created by
- […]
Apr 15, 2022:
- 12:27 PM Ticket #6631 (RFE: matchmaker option for moving only part of a model) created by
- The main use case is that the user only wants to move the residues …
- 12:18 PM Ticket #6586 (Attempt to retrieve context when no valid context) closed by
- can't reproduce: Trying to draw the status line on an expose event. The code has …
- 11:29 AM Ticket #6630 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 8:53 AM Ticket #6629 (Crash redrawing widget) created by
- […]
- 7:57 AM Ticket #6628 (IPython crash) created by
- […]
- 7:55 AM Ticket #6627 (IPython crash) created by
- […]
- 5:39 AM Ticket #6626 (Backrub requires N- and C-terminal flanking residues to be present) created by
- […]
- 2:38 AM Ticket #6625 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:07 AM Ticket #6624 ('Sequence' object has no attribute 'structure') created by
- […] 5_DAAP1.cxc
Apr 14, 2022:
- 8:48 PM Ticket #6623 (Error assigning hydrogen charges) created by
- […]
- 5:28 PM Ticket #6622 (Zoom AlphaFold PAE plot) created by
- A user at Phil's PAE talk asked about zooming the AlphaFold PAE plot …
- 5:23 PM Ticket #6621 (Show pseudobonds between all adjacent residues colored by AlphaFold ...) created by
- To see interfaces where AlphaFold has low confidence it could be …
- 5:20 PM Ticket #6620 (Show residue names at mouse position on AlphaFold PAE plot) created by
- When hovering the mouse over an Alphafold PAE plot it would be useful …
- 5:17 PM Ticket #6619 (In AlphaFold PAE plot show multimer chain boundaries) created by
- When an AlphaFold PAE plot is for more than one chains the residues of …
- 5:02 PM Ticket #6618 (Allow alphafold fetch or predict for a specified PDB identifier) created by
- Phil says a user asked during his alphafold pae presentation about …
- 4:49 PM Ticket #6403 (Add a centering option when saving GLTF) closed by
- fixed: Fixed. Made the "center" option for the save command for GLTF format …
- 3:50 PM Ticket #6611 (Lots of keyboard interrupts after "volume level" command) closed by
- fixed: Fixed. Made ctrl-C in the startup shell exit ChimeraX with a …
- 2:20 PM Ticket #6612 (Crash fetching from EMDB) closed by
- can't reproduce: Surprising to see a crash in the builtin Python socket module. Thread …
- 2:01 PM NTTData edited by
- (diff)
- 1:50 PM NTTData edited by
- (diff)
- 1:23 PM NTTData edited by
- (diff)
- 12:31 PM Ticket #6617 (RFE: speed control on playback sliders) created by
- for model series, trajectories, volume/DICOM time series and any other …
- 12:25 PM Ticket #6616 (DICOM lung preset doesn't play well with SEG models) created by
- Using the DICOM lung preset with the RIDER lung datasets gives a …
- 10:47 AM Ticket #6609 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics 655, dual display) closed by
- nonchimerax: Apple graphics driver crash.
- 10:35 AM ChangeLog edited by
- (diff)
- 9:06 AM Ticket #6615 (Crash copying custom attributes for Crystal Contacts) created by
- […]
- 8:34 AM Ticket #6614 (Lots of previously fixed problems) closed by
- duplicate
- 8:26 AM Ticket #6610 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: Hi Sarah, Thanks for reporting this problem. It is an infrequent …
- 8:19 AM Ticket #6608 (Can't show sequence) closed by
- duplicate: Hi Uzay, Thanks for reporting this problem. It was only that one …
- 8:01 AM Ticket #6614 (Lots of previously fixed problems) created by
- […]
- 7:05 AM Ticket #6613 (Crash Mac X11 → Linux) created by
- […]
Apr 13, 2022:
- 8:42 PM Ticket #6612 (Crash fetching from EMDB) created by
- […]
- 6:27 PM Ticket #6611 (Lots of keyboard interrupts after "volume level" command) created by
- […]
- 6:23 PM Ticket #6610 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 5:15 PM Ticket #6609 (Graphics crash, macOS 10.15.7, Intel Iris Plus Graphics 655, dual display) created by
- […]
- 4:44 PM Ticket #6608 (Can't show sequence) created by
- […]
- 10:10 AM Ticket #6598 (Can't show sequence) closed by
- fixed
- 9:45 AM Ticket #6604 (glClear: invalid framebuffer operation) closed by
- can't reproduce: OpenGL error drawing status line. Probably a bug with opengl on two …
- 9:42 AM Ticket #6603 (Graphics crash, macOS 12.3.1, Intel Iris Plus Graphics) closed by
- nonchimerax
- 8:56 AM Ticket #6607 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:48 AM Ticket #6606 ('Sequence' object has no attribute 'structure') closed by
- duplicate
- 8:39 AM Ticket #6602 (Updating list of available bundles failed: No module named 'pwd') closed by
- duplicate
- 8:38 AM Ticket #6601 (Needleman-Wunsch failure) closed by
- can't reproduce
- 8:33 AM Ticket #6607 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 8:29 AM Ticket #6600 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: Hi Tony, This is indeed an infrequent error involving Python garbage …
- 7:32 AM Ticket #6606 ('Sequence' object has no attribute 'structure') created by
- […]
- 6:23 AM Ticket #6605 (Crash restoring session) created by
- […]
- 6:14 AM Ticket #6604 (glClear: invalid framebuffer operation) created by
- […]
- 5:38 AM Ticket #6603 (Graphics crash, macOS 12.3.1, Intel Iris Plus Graphics) created by
- […]
- 5:23 AM Ticket #6602 (Updating list of available bundles failed: No module named 'pwd') created by
- […]
- 12:44 AM Ticket #6601 (Needleman-Wunsch failure) created by
- […]
Apr 12, 2022:
- 3:04 PM Ticket #6600 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:23 PM Ticket #6599 (RFE: Blast protein option to "List only best-matching chain per PDB entry") created by
- Would like "List only best-matching chain per PDB entry" option like …
- 1:50 PM Ticket #6595 (Crash in Quick Start guide showing ribbons) closed by
- nonchimerax: If the whole Windows interface wiped out it was very likely a crash of …
- 12:58 PM Ticket #6598 (Can't show sequence) created by
- […]
- 11:06 AM Ticket #6596 (CHIMERA NOT WORKING ON MY LAPTOP) closed by
- nonchimerax: Hi Sriya, Despite sending this to chimerax-bugs (rather than …
- 10:26 AM Ticket #6594 (Crash in Qt on exit) closed by
- duplicate
- 10:21 AM Ticket #6588 (Unknown crash) closed by
- can't reproduce
- 10:07 AM Ticket #6587 (PDB format) closed by
- not a bug: Hi Cristina, The PDB format only contains information about the …
- 9:30 AM 2022-4-14 created by
- 9:27 AM DeveloperMeetings edited by
- (diff)
- 7:52 AM Ticket #6597 (Crash after swapaa) created by
- […]
- 7:33 AM Ticket #6596 (CHIMERA NOT WORKING ON MY LAPTOP) created by
- […]
- 4:40 AM Ticket #6595 (Crash in Quick Start guide showing ribbons) created by
- […]
- 4:08 AM Ticket #6594 (Crash in Qt on exit) created by
- […]
- 2:03 AM Ticket #6593 (CentOS 7 daily build still Qt5) created by
- […]
Apr 11, 2022:
- 8:13 PM Ticket #6381 (Add a tug command) closed by
- fixed: I added a tug command that allows tugging one set of atoms to the …
- 7:47 PM Ticket #6591 (alphafold fetch should make file history entry) closed by
- fixed: Made alphafold fetch create file history entry -- uses file name. …
- 6:57 PM Ticket #6592 (Set alphafold domain residue attribute pae_domain) closed by
- fixed: Made the alphafold pae command color domain option also set a residue …
- 6:27 PM Ticket #6592 (Set alphafold domain residue attribute pae_domain) created by
- […]
- 6:17 PM Ticket #6589 (Writing texture colors: ZeroDivisionError: integer division or modulo ...) closed by
- fixed: Fixed. Made color image give a clear error message if no surfaces or …
- 5:40 PM Ticket #6591 (alphafold fetch should make file history entry) created by
- […]
- 5:40 PM Ticket #6355 (Toolbar: AttributeError: 'QDropEvent' object has no attribute 'pos') closed by
- fixed
- 5:36 PM Ticket #6564 (Error when building single nucleotide) closed by
- fixed
- 5:32 PM Ticket #6590 (AlphaFold PAE domains should exclude disordered regions) created by
- […]
- 4:41 PM Ticket #6584 (sequence align IndexError: list index out of range) closed by
- fixed: Job/Task API was calling on_finish() twice for blocking jobs
- 4:37 PM Ticket #6589 (Writing texture colors: ZeroDivisionError: integer division or modulo ...) created by
- […]
- 4:20 PM Ticket #6588 (Unknown crash) created by
- […]
- 4:14 PM Ticket #5241 (Blastprotein: Ambiguous behavior of sequence-only hits) closed by
- fixed: I added a context menu item, "Load {AlphaFold,NRDB,PDB,UniProt} …
- 3:04 PM Ticket #6587 (PDB format) created by
- […]
- 3:02 PM Ticket #6586 (Attempt to retrieve context when no valid context) created by
- […]
- 12:45 PM Ticket #6585 (/usr/local/cuda/bin/nvcc: not found) closed by
- nonchimerax: Great! Will go ahead and close this ticket then.
- 12:32 PM Ticket #5217 (blast protein lists same hit multiple times) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/de20abde528fe643383e2600ba7520 …
- 11:26 AM Ticket #6585 (/usr/local/cuda/bin/nvcc: not found) created by
- […]
- 11:25 AM Ticket #6584 (sequence align IndexError: list index out of range) created by
- […]
- 11:19 AM Ticket #6583 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:45 AM Ticket #6583 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 10:34 AM Ticket #6582 (Settings save failure when saving non-default color) closed by
- duplicate: Hi Dukas, Thanks for reporting this error. It has been fixed in more …
- 10:19 AM Ticket #6579 (glClear: invalid framebuffer operation, drawing status line) closed by
- nonchimerax: This ChimeraX error is due to an Apple OpenGL graphics driver problem. …
- 10:16 AM Ticket #6575 (Graphics crash, macOS 12.3.0, Radeon Pro Vega 64X, fourth report) closed by
- nonchimerax: Same report as #6571
- 10:15 AM Ticket #6574 (Graphics driver crash, macOS 12.3.0, Radeon Pro Vega 64X, third report) closed by
- can't reproduce: Same report as #6571.
- 10:13 AM Ticket #6573 (Graphics driver crash, macOS 12.3.0, Radeon Pro Vega 64X, second report) closed by
- nonchimerax: Duplicate of #6571
- 10:10 AM Ticket #6571 (Graphics crash, macOS 12.3.0, Radeon Pro Vega 64X) closed by
- nonchimerax: Apple graphics driver crash.
- 9:49 AM Ticket #6578 (QWebEnginePage has no view() method) closed by
- duplicate: Duplicate of #6402
- 9:45 AM Ticket #6577 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:43 AM Ticket #6576 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:39 AM Ticket #6572 (Crash in QMainWindow::removeDockWidget) closed by
- can't reproduce
- 9:37 AM Ticket #6570 (Closing already-dead window?) closed by
- can't reproduce
- 9:33 AM Ticket #6569 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:32 AM Ticket #6582 (Settings save failure when saving non-default color) created by
- […]
- 9:31 AM Ticket #6568 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:30 AM Ticket #6567 (Crash opening PDB file) closed by
- can't reproduce: Hi, Thanks for reporting this problem. I would suggest upgrading to …
- 9:27 AM Ticket #6566 (Crash opening PDB file) closed by
- can't reproduce
- 9:26 AM Ticket #6565 (Crash opening PDB file) closed by
- can't reproduce
- 9:17 AM Ticket #6563 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:14 AM Ticket #6562 (Crash setting log HTML) closed by
- can't reproduce
- 5:10 AM Ticket #6581 (Showing RMSD) created by
- […]
- 3:42 AM Ticket #6580 (Registration time-format error) created by
- […]
- 2:32 AM Ticket #6579 (glClear: invalid framebuffer operation, drawing status line) created by
- […]
Apr 10, 2022:
- 10:44 PM Ticket #6578 (QWebEnginePage has no view() method) created by
- […]
- 2:58 PM Ticket #6577 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 6:44 AM Ticket #6576 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Apr 8, 2022:
- 5:09 PM Ticket #5227 (Blastprotein: Expose uniref databases) closed by
- fixed: Implemented in …
- 2:38 PM Ticket #6575 (Graphics crash, macOS 12.3.0, Radeon Pro Vega 64X, fourth report) created by
- […]
- 2:13 PM Ticket #6574 (Graphics driver crash, macOS 12.3.0, Radeon Pro Vega 64X, third report) created by
- […]
- 2:07 PM Ticket #6573 (Graphics driver crash, macOS 12.3.0, Radeon Pro Vega 64X, second report) created by
- […]
- 2:05 PM Ticket #6572 (Crash in QMainWindow::removeDockWidget) created by
- […]
- 2:02 PM Ticket #6571 (Graphics crash, macOS 12.3.0, Radeon Pro Vega 64X) created by
- […]
- 11:46 AM Ticket #6570 (Closing already-dead window?) created by
- […]
- 10:46 AM Ticket #6402 (QWebEnginePage has no view() method) closed by
- fixed
- 10:08 AM Ticket #6163 (Qt6 does not show Toolbar rollover arrows) closed by
- fixed: Fixed in PyQt6-Qt6==6.2.4 (upgraded by Greg in …
- 4:41 AM Ticket #6569 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 4:00 AM Ticket #6568 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 12:20 AM Ticket #6567 (Crash opening PDB file) created by
- […]
- 12:16 AM Ticket #6566 (Crash opening PDB file) created by
- […]
- 12:12 AM Ticket #6565 (Crash opening PDB file) created by
- […]
Apr 7, 2022:
- 5:43 PM Dev2022-4-07 edited by
- (diff)
- 5:30 PM 2022-4-7 edited by
- (diff)
- 3:39 PM Ticket #6564 (Error when building single nucleotide) created by
- […]
- 2:59 PM Ticket #6563 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:14 PM Ticket #6562 (Crash setting log HTML) created by
- […]
- 12:29 PM Ticket #6561 (volume sdLevels option gives wrong levels on multiple volumes) closed by
- fixed: Fixed. The sdLevel and rmsLevel options of the volume command code …
- 12:27 PM Ticket #6561 (volume sdLevels option gives wrong levels on multiple volumes) created by
- Begin forwarded message: From: Moisés Maestro López via …
- 12:12 PM Ticket #6560 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce
- 11:27 AM Ticket #6560 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 10:25 AM Ticket #6559 (Crash showing Rapid Access) created by
- […]
- 9:47 AM Ticket #6558 (Crash in garbage collection during new object allocation) closed by
- duplicate
- 9:46 AM Ticket #6557 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce
- 9:44 AM Ticket #6556 (Crash after 'view sel') closed by
- can't reproduce: Quite possibly also our old friend, the File→Open dialog
- 8:17 AM Ticket #6558 (Crash in garbage collection during new object allocation) created by
- […]
- 8:03 AM Ticket #6557 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 2:50 AM Ticket #6556 (Crash after 'view sel') created by
- […]
Apr 6, 2022:
- 11:53 AM Ticket #6554 (VirtualGL: glClear: invalid operation) reopened by
- Will try to help commercial license holder get ChimeraX running with …
- 10:49 AM Ticket #6554 (VirtualGL: glClear: invalid operation) closed by
- nonchimerax: This OpenGL "invalid operation" error just means your VirtualGL is not …
- 10:42 AM Ticket #6555 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: Still Python 3.9.6 for this one.
- 10:37 AM Ticket #6553 (Destruction of status bar during session restore: wrapped C/C++ object ...) closed by
- duplicate: Fixed in 1.3.
- 10:27 AM Ticket #6555 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 10:11 AM Ticket #6552 (Graphics driver crash, macOS 12.2.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple graphics driver crashed. Unfortunately the Intel Mac graphics …
- 10:08 AM Ticket #6550 (Graphics driver crash, macOS 12.2.1, Intel Iris Plus Graphics 650, ...) closed by
- nonchimerax: Crash in Apple graphics driver. Unfortunately Apple graphics drivers …
- 10:06 AM Ticket #6554 (VirtualGL: glClear: invalid operation) created by
- […]
- 10:06 AM Ticket #6549 (Crash opening EMDB entry) closed by
- can't reproduce: Looks like the EMDB fetch had not completed since the log does not …
- 10:04 AM Ticket #6553 (Destruction of status bar during session restore: wrapped C/C++ object ...) created by
- […]
- 9:58 AM Ticket #6547 (Crash creating QWebEngineProfile) closed by
- can't reproduce: Likely Qt bug. Reported about a dozen times or more. Hopefully fixed …
- 9:44 AM Ticket #6548 (MatchMaker: wrapped C/C++ object of type QPushButton has been deleted) closed by
- duplicate: Duplicate of #6151
- 9:38 AM Ticket #6552 (Graphics driver crash, macOS 12.2.1, Intel Iris Plus Graphics) created by
- […]
- 3:49 AM Ticket #6551 (Bad atom spec causes traceback) created by
- […]
- 1:57 AM Ticket #6550 (Graphics driver crash, macOS 12.2.1, Intel Iris Plus Graphics 650, ...) created by
- […]
- 12:24 AM Ticket #6549 (Crash opening EMDB entry) created by
- […]
Apr 5, 2022:
- 11:22 PM Ticket #6548 (MatchMaker: wrapped C/C++ object of type QPushButton has been deleted) created by
- […]
- 7:20 PM Ticket #6547 (Crash creating QWebEngineProfile) created by
- […]
- 11:03 AM Ticket #6168 (Demoted sequence in match_maps after residue deletion) closed by
- fixed: Fixed. Fix will be in tomorrow's daily build.
- 10:03 AM Ticket #6527 (RFE: option to always draw a specific model on top) closed by
- not a bug: Seems the problem here was that Mauricio did not know that beta strand …
- 10:00 AM Ticket #6545 (Crash recording spin movie) closed by
- can't reproduce: ffmpeg encoding failed. ffmpeg does not give any sensible error …
- 9:54 AM Ticket #6539 (Hang during redraw?) closed by
- can't reproduce: The user typed ctrl-C at the shell (Linux) to interrupt ChimeraX. No …
- 9:44 AM 2022-4-7 created by
- 9:42 AM DeveloperMeetings edited by
- (diff)
- 9:05 AM Ticket #6546 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 9:01 AM Ticket #6544 (Crash getting Windows version) closed by
- can't reproduce
- 8:56 AM Ticket #6541 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 6:58 AM Ticket #6546 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:52 AM Ticket #6545 (Crash recording spin movie) created by
- […]
- 12:41 AM Ticket #6544 (Crash getting Windows version) created by
- […]
Apr 4, 2022:
- 8:08 PM Ticket #6543 (Update to AlphaFold 2.2.0) closed by
- fixed: Done.
- 5:20 PM Ticket #6524 (Loss of occupancy/bfactor) closed by
- duplicate: Hi Moritz, Update your version of ChimeraX. There was a period of 11 …
- 5:19 PM Ticket #6543 (Update to AlphaFold 2.2.0) created by
- Update ChimeraX structure prediction from AlphaFold 2.1.0 to 2.2.0. …
- 4:00 PM Ticket #6542 (Errors checking for newer version) created by
- […]
- 3:39 PM Ticket #6541 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 3:24 PM Ticket #6540 (OpenMM crash) created by
- […]
- 3:08 PM Ticket #6539 (Hang during redraw?) created by
- […]
- 12:21 PM Ticket #5164 (Include reference documentation) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/932517bbe42f676154f4ece51fb902 …
- 12:06 PM Ticket #6538 (Add biomtSet option the sym command) created by
- Begin forwarded message: From: "Anderson, Jacob via ChimeraX-users" …
- 11:47 AM Ticket #6531 (Read pseudobonds: syntax error should not produce traceback) closed by
- fixed: Fixed. If atoms are not found give error message but no traceback.
- 11:35 AM Ticket #6530 (Infinite recursion in find_close_points_boxes) closed by
- duplicate: This bug was fixed 4 months ago, bug #5800. Fix is in daily build. …
- 11:34 AM Ticket #6496 (Blast failure during AlphaFold search) closed by
- fixed: After reconfiguring the way that the BLAST gui works for another …
- 11:24 AM Ticket #6537 (Graphics driver crash, macOS 10.13.6, Intel HD Graphics 6000) closed by
- nonchimerax: Apple graphics driver crash. Unfortunately Intel Mac graphics drivers …
- 11:19 AM Ticket #6536 (Crash in removeDockWidget()) closed by
- can't reproduce
- 11:15 AM Ticket #6534 (Traceback with non-numeric seq_conservation attribute) closed by
- duplicate
- 10:58 AM Ticket #6533 (Crash attempting to download sequence conservation from ConSurf ...) closed by
- can't reproduce: I have little idea what the user actually means by their description. …
- 10:49 AM Ticket #6532 (Crash in event loop) closed by
- can't reproduce
- 10:42 AM Ticket #6529 (Problem restoring session: invalid load key) closed by
- duplicate
- 10:28 AM Ticket #6526 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 10:28 AM Ticket #6522 (Graphics driver crash, macOS 11.6.4, Intel Iris Plus Graphics 655, ...) closed by
- nonchimerax
- 10:26 AM Ticket #6525 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 9:33 AM Ticket #6521 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: Given that the user had done nothing else (according to the Python …
- 9:30 AM Ticket #6520 (Crash emitting signal) closed by
- can't reproduce
- 9:28 AM Ticket #6519 (Crash running coulombic) closed by
- can't reproduce
- 9:24 AM Ticket #6516 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 9:14 AM Ticket #6537 (Graphics driver crash, macOS 10.13.6, Intel HD Graphics 6000) created by
- […]
- 6:02 AM Ticket #6536 (Crash in removeDockWidget()) created by
- […]
Apr 3, 2022:
- 8:20 PM Ticket #6535 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 3:03 PM Ticket #6534 (Traceback with non-numeric seq_conservation attribute) created by
- […]
- 2:58 PM Ticket #6533 (Crash attempting to download sequence conservation from ConSurf ...) created by
- […]
- 2:46 PM Ticket #6532 (Crash in event loop) created by
- […]
- 2:44 PM Ticket #6531 (Read pseudobonds: syntax error should not produce traceback) created by
- […]
- 9:54 AM Ticket #6530 (Infinite recursion in find_close_points_boxes) created by
- […]
- 8:33 AM Ticket #6529 (Problem restoring session: invalid load key) created by
- […]
Apr 2, 2022:
- 6:01 PM Ticket #6528 (Crash opening mmCIF file) created by
- […]
- 4:58 AM Ticket #6263 (Molecular Dynamics Viewer: Values array length does not match objects ...) closed by
- fixed: Fixed in version 1.3
- 4:57 AM Ticket #6383 (MD Viewer: could not broadcast input array from shape (0) into shape (0,3)) closed by
- fixed: Fixed in version 1.4
Apr 1, 2022:
- 3:46 PM Ticket #6527 (RFE: option to always draw a specific model on top) created by
- Mauricio Losilla would like an option to draw a specific model on top, …
- 2:51 PM Ticket #6526 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 12:27 PM Ticket #6525 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 8:32 AM Ticket #6524 (Loss of occupancy/bfactor) created by
- […]
- 6:33 AM Ticket #6523 (Matplotlib bug) created by
- […]
- 4:52 AM Ticket #6522 (Graphics driver crash, macOS 11.6.4, Intel Iris Plus Graphics 655, ...) created by
- […]
- 1:06 AM Ticket #6521 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Mar 31, 2022:
- 8:51 PM Ticket #6520 (Crash emitting signal) created by
- […]
- 8:49 PM Ticket #6519 (Crash running coulombic) created by
- […]
- 7:31 PM Ticket #6518 (Update OpenMM from version 7.6.0 to 7.7.0) closed by
- fixed: Update to 7.7.0 complete. Tested on all platforms with tug mouse mode …
- 6:38 PM Ticket #6518 (Update OpenMM from version 7.6.0 to 7.7.0) created by
- Want to update OpenMM because the latest version 7.7.0 has a Mac ARM64 …
- 4:19 PM Ticket #6286 (Give a good error message if RBVI resources unavailable) closed by
-
fixed: Should be fixed by the same
NewConnectionErrorcatch that fixed … - 4:13 PM Ticket #6497 (Crash showing bug reporter) closed by
- nonchimerax: ChimeraX crashed when it was trying to show the bug reporter dialog …
- 4:04 PM Ticket #6500 (Close PAE plot with structure) closed by
- fixed: Done.
- 3:41 PM Ticket #6517 (BLAST results should not show an empty table) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/c25142a3c442bd8bc0c8a628c3a273 …
- 2:56 PM Ticket #6517 (BLAST results should not show an empty table) created by
- […]
- 2:53 PM Ticket #6516 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 2:25 PM 2022-3-31 edited by
- (diff)
- 2:25 PM Ticket #6476 (Blast error while web services down) closed by
- fixed
- 2:24 PM Ticket #6501 (Session restore problem: Chain ID cannot be the empty string) closed by
- can't reproduce: Hi Irina, I'm glad you found something that works for you. What I …
- 2:10 PM 2022-3-31 edited by
- (diff)
- 2:03 PM NTTData edited by
- (diff)
- 1:58 PM NTTData edited by
- (diff)
- 1:57 PM NTTData edited by
- (diff)
- 1:50 PM NTTData edited by
- (diff)
- 12:34 PM Ticket #6514 (Crash creating QWebEngineProfile) closed by
- nonchimerax: This Windows ChimeraX crash on startup is a bug in the Qt window …
- 10:54 AM Ticket #6513 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce
- 10:46 AM Ticket #6512 (Calling _cpp_modified failed) closed by
- duplicate: Hi Barrett, Thanks for reporting this problem. I believe it is a …
- 9:54 AM Ticket #6509 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce
- 9:47 AM Ticket #6507 (Crash at startup) closed by
- can't reproduce
- 9:43 AM Ticket #6506 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce
- 9:41 AM Ticket #6515 (Crash after swapaa) created by
- […]
- 7:56 AM Ticket #6514 (Crash creating QWebEngineProfile) created by
- […]
- 5:42 AM Ticket #6513 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 4:16 AM Ticket #6512 (Calling _cpp_modified failed) created by
- […]
- 3:39 AM Ticket #6511 (Focus on sequence selection) created by
- […]
- 3:38 AM Ticket #6510 (Zoom/recenter with mouse) created by
- […]
- 1:51 AM Ticket #6509 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
Mar 30, 2022:
- 11:41 PM Ticket #6508 (Error getting mmCIF templates: URL can't contain control characters) created by
- […]
- 11:40 PM Ticket #6507 (Crash at startup) created by
- […]
- 8:20 PM Ticket #6506 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 11:32 AM Ticket #6505 (Chimera→ChimeraX session converter) created by
- This is a meta-ticket to track the effort to support Chimera sessions …
- 11:26 AM Ticket #6503 (Volume Viewer histogram: cannot convert float NaN to integer) closed by
- not a bug: Map file contained not-a-number NaN values. Bad file.
- 10:40 AM Ticket #6504 (Crash in QScreen::virtualGeometry()) closed by
- can't reproduce: Probably somehow related to the dual displays
- 10:35 AM Ticket #6504 (Crash in QScreen::virtualGeometry()) created by
- […]
- 10:26 AM Ticket #6502 (Problem saving blast table info in session) closed by
- duplicate: Duplicate of #5453
- 9:39 AM Ticket #6499 (Error in toolshed error message) closed by
- duplicate
- 8:55 AM Ticket #6503 (Volume Viewer histogram: cannot convert float NaN to integer) created by
- […]
- 7:38 AM Ticket #6502 (Problem saving blast table info in session) created by
- […]
- 2:36 AM Ticket #6501 (Session restore problem: Chain ID cannot be the empty string) created by
- […]
- 2:27 AM Ticket #6500 (Close PAE plot with structure) created by
- […]
Mar 29, 2022:
- 10:14 PM Ticket #6499 (Error in toolshed error message) created by
- […]
- 6:05 PM Ticket #5035 (Report sequence identity from MAV) closed by
- fixed: "seq id" command and "Percent Identity..." context menu entry.
- 5:53 PM Ticket #6479 (Read EMAN HDF: could not broadcast input array from shape) closed by
- can't reproduce: The user opened an EMAN hdf5 map of size 1960 by 1024 by 60 initially …
- 5:53 PM Ticket #6491 (Crash opening session) closed by
- fixed: Again, thanks for reporting this. It will be fixed in tomorrow's …
- 5:31 PM Ticket #6466 (Failure opening entries 51 and 94 from PDBDev) closed by
- fixed: I fixed the ChimeraX code causing the error opening PDBDev 94. It was …
- 4:07 PM Ticket #6498 (Reinstalling a bundle gives a traceback, should just give clear error ...) created by
- […]
- 3:57 PM 2022-3-31 created by
- 3:56 PM DeveloperMeetings edited by
- (diff)
- 1:48 PM Ticket #6497 (Crash showing bug reporter) created by
- […] clusters.dock4.pdb
- 11:43 AM Training edited by
- (diff)
- 10:37 AM Ticket #6494 (Graphics driver crash, macOS 11.4, Radeon Pro 570, dual display) closed by
- nonchimerax: Apple graphics driver crash while Qt was redrawing user interface.
- 10:21 AM Ticket #6495 (XMAS: 'tuple' object is not callable) closed by
- nonchimerax
- 10:18 AM Ticket #6489 (glUniformMatrix4fv: invalid operation) closed by
- nonchimerax: Likely graphics driver error, Windows, GeForce GTX 1650, driver 456.71 …
- 10:16 AM Ticket #6482 (Crash in swap_buffers) closed by
- nonchimerax: Probably graphics driver crash, Windows, GTX 1050 MaxQ (laptop), May …
- 9:56 AM Ticket #6492 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 9:38 AM Ticket #6490 (Too many atoms bonded to C) closed by
- can't reproduce: Probable bad PDB file.
- 9:38 AM Ticket #6496 (Blast failure during AlphaFold search) created by
- […]
- 9:30 AM Ticket #6495 (XMAS: 'tuple' object is not callable) created by
- […]
- 9:25 AM Ticket #6488 (Calling _cpp_modified failed) closed by
- can't reproduce: Seems like it may be a duplicate of #6168 (Chain getting demoted to …
- 9:22 AM Ticket #6494 (Graphics driver crash, macOS 11.4, Radeon Pro 570, dual display) created by
- […]
- 9:09 AM Ticket #6493 (Matchmaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 9:05 AM Ticket #6486 (Crash reading PDB file) closed by
- duplicate
- 9:05 AM Ticket #6485 (Crash reading PDB file) closed by
- duplicate
- 9:01 AM Ticket #6484 (Crash reading PDB file) closed by
- can't reproduce: Hi Mauricio, Thanks for reporting this problem. You should upgrade …
- 8:47 AM Ticket #6481 (Crash closing tool) closed by
- can't reproduce
- 7:53 AM Ticket #6492 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 7:41 AM Ticket #6491 (Crash opening session) created by
- […]
- 7:40 AM Ticket #6490 (Too many atoms bonded to C) created by
- […]
- 7:36 AM Ticket #6489 (glUniformMatrix4fv: invalid operation) created by
- […]
- 2:51 AM Ticket #6488 (Calling _cpp_modified failed) created by
- […]
Mar 28, 2022:
- 8:33 PM Ticket #6451 (ChimeraX 1.3 start up error) closed by
- nonchimerax: Glad it is working now.
- 5:07 PM Ticket #6487 (Mac multitouch sometimes broken with Qt 6) created by
- […]
- 5:07 PM Ticket #6483 (Blast alphafold search fails: invalid literal for int() with base 10) closed by
- fixed: Should be fixed by …
- 4:19 PM Ticket #6486 (Crash reading PDB file) created by
- […]
- 4:17 PM Ticket #6485 (Crash reading PDB file) created by
- […]
- 4:15 PM Ticket #6484 (Crash reading PDB file) created by
- […]
- 3:48 PM Ticket #6483 (Blast alphafold search fails: invalid literal for int() with base 10) created by
- […]
- 3:13 PM DeveloperMeetings edited by
- (diff)
- 3:12 PM Dev2022-4-07 created by
- 2:33 PM Ticket #6471 (BLAST sequence search is hung) closed by
- fixed
- 2:23 PM Ticket #6482 (Crash in swap_buffers) created by
- […]
- 2:05 PM Ticket #6481 (Crash closing tool) created by
- […]
- 1:52 PM Ticket #6480 (Closing already-dead tool window?) closed by
- can't reproduce
- 1:42 PM Ticket #6480 (Closing already-dead tool window?) created by
- […]
- 11:44 AM Ticket #6478 (Crash in Qt event loop on Windows after changing to stick depiction) closed by
- can't reproduce
- 11:41 AM Ticket #6474 (Ribbon representation crash during simulation) closed by
- can't reproduce: Crashed when trying to compute the ribbons in this line getting the …
- 11:37 AM Ticket #6473 (Crash with suspiciously repetitive stack) closed by
- can't reproduce: Mac crash dump did not have any useful info on the crashing thread. …
- 11:28 AM Ticket #6468 (Crash in Qt event loop after saving sessions with maps) closed by
- can't reproduce: Crash was in _PyObject_Call apparently Qt calling a callback function …
- 11:22 AM Ticket #6477 (Blast error while web services down) closed by
- duplicate
- 11:04 AM Ticket #6467 (Crash after opening sessions containing volumes) closed by
- can't reproduce: After several hundred commands the last command opened a session file. …
- 10:57 AM Ticket #6465 (Crash showing ribbons) closed by
- can't reproduce: Likely graphics driver crash, Intel Mac, no C traceback symbol names.
- 10:54 AM Ticket #6464 (Graphics driver crash, Linux, RTX 3080, in swap_buffers) closed by
- nonchimerax: Graphics driver crash. Modern graphics RTX 3080 laptop, driver from …
- 10:41 AM Ticket #6470 (Save dialog: 'SaveModelOptionWidget' object has no attribute '_name') closed by
- duplicate: Hi Nitesh, Thanks for reporting this problem. It has been fixed for …
- 10:10 AM Ticket #6479 (Read EMAN HDF: could not broadcast input array from shape) created by
- […]
- 9:30 AM Ticket #6478 (Crash in Qt event loop on Windows after changing to stick depiction) created by
- […]
- 9:17 AM Ticket #6463 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 9:12 AM Ticket #6462 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 9:00 AM Ticket #6461 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce
- 7:16 AM Ticket #6477 (Blast error while web services down) created by
- […]
- 7:16 AM Ticket #6476 (Blast error while web services down) created by
- […]
- 6:57 AM Ticket #6475 (Crash getting bundle list?) created by
- […]
- 2:30 AM Ticket #6474 (Ribbon representation crash during simulation) created by
- […]
- 2:24 AM Ticket #6473 (Crash with suspiciously repetitive stack) created by
- […]
Note:
See TracTimeline
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