Opened 4 years ago
#6622 assigned enhancement
Zoom AlphaFold PAE plot
Reported by: | Owned by: | Tom Goddard | |
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Priority: | moderate | Milestone: | |
Component: | Structure Prediction | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
A user at Phil's PAE talk asked about zooming the AlphaFold PAE plot to better see the coloring for specific residue interactions.
I am not sure how useful this will be because a zoomed in region say 20x20 corresponds to the interactions between one 20 amino acid segment and another 20 amino acid segment and that isn't a very natural subset to look at. It is more interesting to I think to choose a subset of interest on the 3D structure rather than on the 2D plot, and transfer colors to the structure, for example by showing colored pseudobonds as in ticket #6621.
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