Opened 4 years ago

#6622 assigned enhancement

Zoom AlphaFold PAE plot

Reported by: phil.cruz@… Owned by: Tom Goddard
Priority: moderate Milestone:
Component: Structure Prediction Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description

A user at Phil's PAE talk asked about zooming the AlphaFold PAE plot to better see the coloring for specific residue interactions.

I am not sure how useful this will be because a zoomed in region say 20x20 corresponds to the interactions between one 20 amino acid segment and another 20 amino acid segment and that isn't a very natural subset to look at. It is more interesting to I think to choose a subset of interest on the 3D structure rather than on the 2D plot, and transfer colors to the structure, for example by showing colored pseudobonds as in ticket #6621.

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