![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#6520 closed defect (can't reproduce)
Crash emitting signal
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | UI | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.3rc202111192158 (2021-11-19 21:58:21 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Process: ChimeraX [70381]
Path: /Volumes/VOLUME/*/ChimeraX-1.3-rc2021.11.19.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.3.0 (1.3.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [70381]
User ID: 501
Date/Time: 2022-03-31 08:36:34.960 +1000
OS Version: macOS 11.6 (20G165)
Report Version: 12
Anonymous UUID: 9D9BFEED-6D91-65E7-A944-F238770C581F
Sleep/Wake UUID: 2605042D-CABB-45FA-BE15-4F394283F653
Time Awake Since Boot: 180000 seconds
Time Since Wake: 980 seconds
System Integrity Protection: enabled
Notes: Translocated Process
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x00007812875e4460
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x7812875e4460:
Stack 70000ed94000-70000fd96000 [ 16.0M] rw-/rwx SM=SHM thread 24
-->
MALLOC_TINY 7f8b8dc00000-7f8b8dd00000 [ 1024K] rw-/rwx SM=PRV
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff2046392e __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff204925bd pthread_kill + 263
2 libsystem_c.dylib 0x00007fff20376bd5 raise + 26
3 libsystem_platform.dylib 0x00007fff204d7d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 org.python.python 0x00000001023c206d cfunction_call + 125
6 org.python.python 0x00000001023836cc _PyObject_Call + 140
7 QtCore.abi3.so 0x000000010b726957 PyQtSlot::call(_object*, _object*) const + 39
8 QtCore.abi3.so 0x000000010b726866 PyQtSlot::invoke(void**, _object*, void*, bool) const + 374
9 QtCore.abi3.so 0x000000010b727455 PyQtSlotProxy::unislot(void**) + 85
10 QtCore.abi3.so 0x000000010b7273ca PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
11 QtCore 0x000000010bb02b9f QObject::event(QEvent*) + 943
12 QtWidgets 0x000000010c5b79ea QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
13 QtWidgets 0x000000010c5b8e11 QApplication::notify(QObject*, QEvent*) + 497
14 QtWidgets.abi3.so 0x000000010c16adb9 sipQApplication::notify(QObject*, QEvent*) + 233
15 QtCore 0x000000010bad7a34 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
16 QtCore 0x000000010bad8d79 QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 809
17 libqcocoa.dylib 0x000000011c957259 QCocoaEventDispatcherPrivate::processPostedEvents() + 313
18 libqcocoa.dylib 0x000000011c9579c8 QCocoaEventDispatcherPrivate::postedEventsSourceCallback(void*) + 40
19 com.apple.CoreFoundation 0x00007fff2058a2bc __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
20 com.apple.CoreFoundation 0x00007fff2058a224 __CFRunLoopDoSource0 + 180
21 com.apple.CoreFoundation 0x00007fff20589fa4 __CFRunLoopDoSources0 + 242
22 com.apple.CoreFoundation 0x00007fff205889cc __CFRunLoopRun + 893
23 com.apple.CoreFoundation 0x00007fff20587f8c CFRunLoopRunSpecific + 563
24 com.apple.HIToolbox 0x00007fff287d01f3 RunCurrentEventLoopInMode + 292
25 com.apple.HIToolbox 0x00007fff287cfe26 ReceiveNextEventCommon + 284
26 com.apple.HIToolbox 0x00007fff287cfcf3 _BlockUntilNextEventMatchingListInModeWithFilter + 70
27 com.apple.AppKit 0x00007fff22d91172 _DPSNextEvent + 864
28 com.apple.AppKit 0x00007fff22d8f945 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1364
29 com.apple.AppKit 0x00007fff22d81c69 -[NSApplication run] + 586
30 libqcocoa.dylib 0x000000011c95662f QCocoaEventDispatcher::processEvents(QFlags) + 2495
31 QtCore 0x000000010bad3acf QEventLoop::exec(QFlags) + 431
32 QtCore 0x000000010bad8042 QCoreApplication::exec() + 130
33 QtWidgets.abi3.so 0x000000010c25c702 meth_QApplication_exec_(_object*, _object*) + 82
34 org.python.python 0x00000001023c206d cfunction_call + 125
35 org.python.python 0x000000010238317d _PyObject_MakeTpCall + 365
36 org.python.python 0x000000010245b61c call_function + 876
37 org.python.python 0x0000000102458ab3 _PyEval_EvalFrameDefault + 25219
38 org.python.python 0x0000000102383948 function_code_fastcall + 104
39 org.python.python 0x000000010238598a method_vectorcall + 202
40 org.python.python 0x000000010245b58c call_function + 732
41 org.python.python 0x0000000102458ab3 _PyEval_EvalFrameDefault + 25219
42 org.python.python 0x000000010245c283 _PyEval_EvalCode + 2611
43 org.python.python 0x00000001023838d1 _PyFunction_Vectorcall + 289
44 org.python.python 0x000000010245b58c call_function + 732
45 org.python.python 0x0000000102458b4b _PyEval_EvalFrameDefault + 25371
46 org.python.python 0x000000010245c283 _PyEval_EvalCode + 2611
47 org.python.python 0x000000010245270b PyEval_EvalCode + 139
48 org.python.python 0x000000010244f592 builtin_exec + 626
49 org.python.python 0x00000001023c186a cfunction_vectorcall_FASTCALL + 218
50 org.python.python 0x000000010245b58c call_function + 732
51 org.python.python 0x0000000102458b4b _PyEval_EvalFrameDefault + 25371
52 org.python.python 0x000000010245c283 _PyEval_EvalCode + 2611
53 org.python.python 0x00000001023838d1 _PyFunction_Vectorcall + 289
54 org.python.python 0x000000010245b58c call_function + 732
55 org.python.python 0x0000000102458b4b _PyEval_EvalFrameDefault + 25371
56 org.python.python 0x000000010245c283 _PyEval_EvalCode + 2611
57 org.python.python 0x00000001023838d1 _PyFunction_Vectorcall + 289
58 org.python.python 0x00000001024c1e20 pymain_run_module + 208
59 org.python.python 0x00000001024c1537 Py_RunMain + 1431
60 org.python.python 0x00000001024c1b3f pymain_main + 223
61 org.python.python 0x00000001024c1a4b Py_Main + 43
62 edu.ucsf.cgl.ChimeraX 0x0000000102339dc8 main + 120
63 libdyld.dylib 0x00007fff204adf3d start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff2045fcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20492e49 _pthread_cond_wait + 1298
2 libopenblas.0.dylib 0x000000010300ba9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 2:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff204661d2 kevent64 + 10
1 QtWebEngineCore 0x0000000112163e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000112163cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x00000001120ec62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001120b07cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x00000001120f7a94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x000000011210ba7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 3:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff2045d2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045d62c mach_msg + 60
2 QtWebEngineCore 0x0000000112159492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000112101778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000112102150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000112101c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 4:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff204661d2 kevent64 + 10
1 QtWebEngineCore 0x0000000112163e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000112163cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x00000001120ec62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001120b07cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000116030f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x000000011210ba7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2045d2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045d62c mach_msg + 60
2 QtWebEngineCore 0x0000000112159492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001121592cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001120811db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001120ec62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001120b07cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011210ba7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 6:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2045d2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045d62c mach_msg + 60
2 QtWebEngineCore 0x0000000112159492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000112101778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000112102150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x0000000112101cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 7:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff2045fcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20492e49 _pthread_cond_wait + 1298
2 QtWebEngineCore 0x0000000112150e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x00000001134085f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 8:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff2045d2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045d62c mach_msg + 60
2 QtWebEngineCore 0x0000000112159492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000011208120f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x00000001120ec62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x00000001120b07cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x000000011210ba7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 9:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff204661d2 kevent64 + 10
1 QtWebEngineCore 0x0000000112163e6a base::MessagePumpKqueue::DoInternalWork(base::MessagePump::Delegate::NextWorkInfo*) + 330
2 QtWebEngineCore 0x0000000112163cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x00000001120ec62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x00000001120b07cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000011210ba7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 10:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff2045d2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045d62c mach_msg + 60
2 QtWebEngineCore 0x0000000112159492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001121592cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001120811db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001120ec62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001120b07cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011210ba7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2045d2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045d62c mach_msg + 60
2 QtWebEngineCore 0x0000000112159492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001121592cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001120811db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001120ec62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001120b07cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011210ba7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 12:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff2045d2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045d62c mach_msg + 60
2 QtWebEngineCore 0x0000000112159492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001121592cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011210176a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x0000000112102150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x0000000112101d34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 13:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2045d2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045d62c mach_msg + 60
2 QtWebEngineCore 0x0000000112159492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001121592cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001120811db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001120ec62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001120b07cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011210ba7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 14:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff2045d2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045d62c mach_msg + 60
2 QtWebEngineCore 0x0000000112159492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001121592cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001120811db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001120ec62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001120b07cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011210ba7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff2045d2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045d62c mach_msg + 60
2 QtWebEngineCore 0x0000000112159492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001121592cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x00000001120811db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x00000001120ec62b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x00000001120b07cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000011210ba7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 16:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff2045d2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045d62c mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff2058a49f __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff20588b7f __CFRunLoopRun + 1328
4 com.apple.CoreFoundation 0x00007fff20587f8c CFRunLoopRunSpecific + 563
5 com.apple.AppKit 0x00007fff22f1723a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 17:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff2045d2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045d62c mach_msg + 60
2 QtWebEngineCore 0x0000000112159492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x00000001121592cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000011210176a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x0000000112101e3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x0000000112101c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 18:
0 libsystem_pthread.dylib 0x00007fff2048e420 start_wqthread + 0
Thread 19:
0 libsystem_pthread.dylib 0x00007fff2048e420 start_wqthread + 0
Thread 20:
0 libsystem_pthread.dylib 0x00007fff2048e420 start_wqthread + 0
Thread 21:
0 libsystem_pthread.dylib 0x00007fff2048e420 start_wqthread + 0
Thread 22:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff2045d2ba mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff2045d62c mach_msg + 60
2 QtWebEngineCore 0x0000000112159492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x0000000112101778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x0000000112101e3d base::internal::WorkerThread::RunWorker() + 237
5 QtWebEngineCore 0x0000000112101cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x0000000112154e07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 23:
0 libsystem_pthread.dylib 0x00007fff2048e420 start_wqthread + 0
Thread 24:
0 libsystem_kernel.dylib 0x00007fff2045fcde __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff20492e49 _pthread_cond_wait + 1298
2 org.python.python 0x00000001024b1d6c PyThread_acquire_lock_timed + 700
3 org.python.python 0x0000000102500a1f acquire_timed + 111
4 org.python.python 0x0000000102500b30 lock_PyThread_acquire_lock + 48
5 org.python.python 0x000000010238be54 method_vectorcall_VARARGS_KEYWORDS + 388
6 org.python.python 0x000000010245b58c call_function + 732
7 org.python.python 0x0000000102458a92 _PyEval_EvalFrameDefault + 25186
8 org.python.python 0x000000010245c283 _PyEval_EvalCode + 2611
9 org.python.python 0x00000001023838d1 _PyFunction_Vectorcall + 289
10 org.python.python 0x000000010245b58c call_function + 732
11 org.python.python 0x0000000102458a92 _PyEval_EvalFrameDefault + 25186
12 org.python.python 0x000000010245c283 _PyEval_EvalCode + 2611
13 org.python.python 0x00000001023838d1 _PyFunction_Vectorcall + 289
14 org.python.python 0x000000010245b58c call_function + 732
15 org.python.python 0x0000000102458a92 _PyEval_EvalFrameDefault + 25186
16 org.python.python 0x0000000102383948 function_code_fastcall + 104
17 org.python.python 0x000000010245b58c call_function + 732
18 org.python.python 0x0000000102458a92 _PyEval_EvalFrameDefault + 25186
19 org.python.python 0x0000000102383948 function_code_fastcall + 104
20 org.python.python 0x000000010245b58c call_function + 732
21 org.python.python 0x0000000102458a92 _PyEval_EvalFrameDefault + 25186
22 org.python.python 0x0000000102383948 function_code_fastcall + 104
23 org.python.python 0x00000001023859d2 method_vectorcall + 274
24 org.python.python 0x00000001025003c6 t_bootstrap + 70
25 org.python.python 0x00000001024b18c9 pythread_wrapper + 25
26 libsystem_pthread.dylib 0x00007fff204928fc _pthread_start + 224
27 libsystem_pthread.dylib 0x00007fff2048e443 thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000010cd30e00 rcx: 0x00007f8b90155a58 rdx: 0x0000000000000000
rdi: 0x0000000000000103 rsi: 0x000000000000000b rbp: 0x00007f8b90155a80 rsp: 0x00007f8b90155a58
r8: 0x00007f8b90155f48 r9: 0x5695e29a1e0b84f9 r10: 0x000000010cd30e00 r11: 0x0000000000000246
r12: 0x0000000000000103 r13: 0x00006000018a18c0 r14: 0x000000000000000b r15: 0x0000000000000016
rip: 0x00007fff2046392e rfl: 0x0000000000000246 cr2: 0x00007f8b9037c500
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Thread 0 instruction stream:
89 e5 41 57 41 56 41 55-41 54 53 48 83 ec 48 48 ..AWAVAUATSH..HH
89 fb 48 8b 7f 20 48 8b-47 08 f6 40 20 02 75 1d ..H.. H.G..@ .u.
49 89 f4 48 8b 4b 10 48-8b 41 40 48 85 c0 74 29 I..H.K.H.A@H..t)
4c 89 e6 ff d0 85 c0 0f-88 ef 03 00 00 48 8b 1d L............H..
1a e2 02 00 48 ff 03 48-89 d8 48 83 c4 48 5b 41 ....H..H..H..H[A
5c 41 5d 41 5e 41 5f 5d-c3 4c 8b 69 38 48 8b 07 \A]A^A_].L.i8H..
[ff]10 49 8b 4d 10 48 8b-51 10 48 8d 74 11 01 48 ..I.M.H.Q.H.t..H .u.I....M.u.M.
76 10 4c 8b 7b 20 49 8b-45 00 48 63 58 0c 48 63 v.L.{ I.E.HcX.Hc
40 08 48 29 c3 4c 89 e7-e8 1b 99 00 00 48 39 d8 @.H).L.......H9.
Thread 0 last branch register state not available.
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0x7fff73c5f000 - 0x7fff73c6afff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff73e80000 - 0x7fff73e98fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77a10000 - 0x7fff77a17fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=1.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.4G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 512K 4
Activity Tracing 256K 1
CG backing stores 3240K 6
CG image 1332K 36
CoreAnimation 1440K 64
CoreGraphics 12K 2
CoreUI image data 5188K 41
Foundation 36K 2
Kernel Alloc Once 8K 1
MALLOC 834.2M 531
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 24K 2
OpenGL GLSL 384K 5
STACK GUARD 96K 24
Stack 155.7M 25
Stack Guard 56.0M 1
VM_ALLOCATE 81.1M 81
__DATA 31.2M 607
__DATA_CONST 25.4M 284
__DATA_DIRTY 1293K 187
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 592.7M 150
__OBJC_RO 70.3M 1
__OBJC_RW 2496K 2
__TEXT 592.2M 585
__UNICODE 588K 1
mapped file 608.7M 60
shared memory 2968K 24
=========== ======= =======
TOTAL 3.4G 2739
TOTAL, minus reserved VM space 3.0G 2739
System Profile:
Network Service: Wi-Fi, AirPort, en0
Boot Volume File System Type: apfs
Memory Module: BANK 0/DIMM0, 4 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C3531324D3332443250462D3039
Memory Module: BANK 1/DIMM0, 4 GB, LPDDR3, 2133 MHz, 0x802C, 0x4D5435324C3531324D3332443250462D3039
USB Device: USB 3.0 Bus
Thunderbolt Bus: MacBook Pro, Apple Inc., 41.4
Model: MacBookPro14,1, BootROM 429.140.8.0.0, 2 processors, Dual-Core Intel Core i5, 2.3 GHz, 8 GB, SMC 2.43f11
Graphics: kHW_IntelIrisGraphics640Item, Intel Iris Plus Graphics 640, spdisplays_builtin
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x170), Broadcom BCM43xx 1.0 (7.77.111.1 AirPortDriverBrcmNIC-1680.8)
Bluetooth: Version 8.0.5d7, 3 services, 27 devices, 1 incoming serial ports
Log:
UCSF ChimeraX version: 1.3rc202111192158 (2021-11-19)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-16.5.2
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 640
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro14,1
Processor Name: Dual-Core Intel Core i5
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
System Firmware Version: 429.140.8.0.0
SMC Version (system): 2.43f11
Software:
System Software Overview:
System Version: macOS 11.6 (20G165)
Kernel Version: Darwin 20.6.0
Time since boot: 16 days 22:15
Graphics/Displays:
Intel Iris Plus Graphics 640:
Chipset Model: Intel Iris Plus Graphics 640
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x5926
Revision ID: 0x0006
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.1.1
charset-normalizer: 2.0.7
ChimeraX-AddCharge: 1.2
ChimeraX-AddH: 2.1.10
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.30.2
ChimeraX-AtomicLibrary: 4.1.5
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3rc202111192158
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.7.3
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.2
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.22
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.2
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → UI |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash emitting signal |
comment:2 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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