![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#6465 closed defect (can't reproduce)
Crash showing ribbons
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Depiction | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
{"app_name":"ChimeraX","timestamp":"2022-03-25 10:58:14.00 +0000","app_version":"","slice_uuid":"9596eff5-d2be-396c-9c4e-6177235c3dae","build_version":"","platform":1,"share_with_app_devs":0,"is_first_party":1,"bug_type":"309","os_version":"macOS 12.1 (21C52)","incident_id":"9C61AF21-D398-4544-A983-7F308E8C01E7","name":"ChimeraX"}
{
"uptime" : 120000,
"procLaunch" : "2022-03-24 16:32:11.9530 +0000",
"procRole" : "Unspecified",
"version" : 2,
"userID" : 503,
"deployVersion" : 210,
"modelCode" : "MacBookPro16,2",
"procStartAbsTime" : 113135685321376,
"coalitionID" : 8391,
"osVersion" : {
"train" : "macOS 12.1",
"build" : "21C52",
"releaseType" : "User"
},
"captureTime" : "2022-03-25 10:58:14.5511 +0000",
"incident" : "9C61AF21-D398-4544-A983-7F308E8C01E7",
"bug_type" : "309",
"pid" : 48512,
"procExitAbsTime" : 122845919074579,
"cpuType" : "X86-64",
"procName" : "ChimeraX",
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "DE3E0CEC-2671-665D-0F23-CF4242532BCB",
"responsiblePid" : 48500,
"wakeTime" : 2786,
"bridgeVersion" : {"build":"19P647","train":"6.1"},
"sleepWakeUUID" : "AA5D0A4D-976B-400F-B38F-9241068296E3",
"sip" : "enabled",
"vmRegionInfo" : "0x108614160 is in 0x108444000-0x1086a9000; bytes after start: 1900896 bytes before end: 609951\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n mapped file 108422000-10843c000 [ 104K] r--\/rwx SM=COW ...t_id=f4dbe1cf\n GAP OF 0x8000 BYTES\n---> mapped file 108444000-1086a9000 [ 2452K] r-x\/rwx SM=COW ...t_id=f3e99dcf\n mapped file 1086a9000-1086e3000 [ 232K] rw-\/rwx SM=COW ...t_id=fba8b1cf",
"isCorpse" : 1,
"exception" : {"codes":"0x000000000000000a, 0x0000000108614160","rawCodes":[10,4435558752],"type":"EXC_BAD_ACCESS","signal":"SIGILL","subtype":"KERN_MEMORY_ERROR at 0x0000000108614160"},
"termination" : {"flags":0,"code":4,"namespace":"SIGNAL","indicator":"Illegal instruction: 4","byProc":"ChimeraX","byPid":48512},
"ktriageinfo" : "VM - Object is not alive\nVM - Object is not alive\nVM - Object is not alive\nVM - Object is not alive\nVM - Object is not alive\n",
"vmregioninfo" : "0x108614160 is in 0x108444000-0x1086a9000; bytes after start: 1900896 bytes before end: 609951\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n mapped file 108422000-10843c000 [ 104K] r--\/rwx SM=COW ...t_id=f4dbe1cf\n GAP OF 0x8000 BYTES\n---> mapped file 108444000-1086a9000 [ 2452K] r-x\/rwx SM=COW ...t_id=f3e99dcf\n mapped file 1086a9000-1086e3000 [ 232K] rw-\/rwx SM=COW ...t_id=fba8b1cf",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"triggered":true,"id":1065003,"threadState":{"r13":{"value":140259841050800},"rax":{"value":4435558752},"rflags":{"value":66050},"cpu":{"value":3},"r14":{"value":140259140670912},"rsi":{"value":140259673247048},"r8":{"value":140259673247152},"cr2":{"value":4435558752},"rdx":{"value":140259673247152},"r10":{"value":4575336108,"symbolLocation":172,"symbol":"_main_thread"},"r9":{"value":9610796538490272222},"r15":{"value":45},"rbx":{"value":140259673247152},"trap":{"value":14,"description":"(no mapping for user instruction read)"},"err":{"value":20},"r11":{"value":518},"rip":{"value":4435558752,"matchesCrashFrame":1},"rbp":{"value":140259673244384},"rsp":{"value":140259673244376},"r12":{"value":9610796538490272222},"rcx":{"value":140259673247048},"flavor":"x86_THREAD_STATE","rdi":{"value":10}},"frames":[{"imageOffset":4435558752,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":140259673276624,"imageIndex":0},{"imageOffset":4436293168,"imageIndex":0},{"imageOffset":4436254256,"imageIndex":0},{"imageOffset":7596853926442330215,"imageIndex":0},{"imageOffset":18446742978509668351,"imageIndex":0},{"imageOffset":4436201168,"imageIndex":0},{"imageOffset":140259673302320,"imageIndex":0},{"imageOffset":4436293168,"imageIndex":0},{"imageOffset":2334111870319292009,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":4436284912,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":1953718627,"imageIndex":0},{"imageOffset":28271,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":8316213802654266469,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":8746391937489266026,"imageIndex":0},{"imageOffset":140259673330096,"imageIndex":0},{"imageOffset":4436256160,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":140259673344096,"imageIndex":0},{"imageOffset":140259673357808,"imageIndex":0},{"imageOffset":913633416031982173,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":140259673331824,"imageIndex":0},{"imageOffset":0,"imageIndex":0},{"imageOffset":4436281056,"imageIndex":0},{"imageOffset":520,"imageIndex":0}]},{"id":1065018,"frames":[{"imageOffset":140703341188358,"imageIndex":0},{"imageOffset":4578941599,"imageIndex":0},{"imageOffset":140703341425908,"imageIndex":0},{"imageOffset":140703341408271,"imageIndex":0}]},{"id":1065019,"frames":[{"imageOffset":140703341188358,"imageIndex":0},{"imageOffset":4578941599,"imageIndex":0},{"imageOffset":140703341425908,"imageIndex":0},{"imageOffset":140703341408271,"imageIndex":0}]},{"id":1065020,"frames":[{"imageOffset":140703341188358,"imageIndex":0},{"imageOffset":4578941599,"imageIndex":0},{"imageOffset":140703341425908,"imageIndex":0},{"imageOffset":140703341408271,"imageIndex":0}]}],
"usedImages" : [
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
}
],
"sharedCache" : {
"base" : 140703338172416,
"size" : 15216738304,
"uuid" : "40432a03-88d3-305f-9c0c-e7549e71d927"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=628K resident=0K(0%) swapped_out_or_unallocated=628K(100%)\nWritable regions: Total=1.6G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.6G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nKernel Alloc Once 8K 1 \nMALLOC 256.1M 32 \nMALLOC guard page 24K 5 \nMALLOC_MEDIUM (reserved) 840.0M 7 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)\nSTACK GUARD 12K 3 \nStack 9752K 4 \nStack Guard 56.0M 1 \nVM_ALLOCATE 96.3M 9 \nVM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)\n__DATA 16K 1 \n__DATA_CONST 80K 1 \n__LINKEDIT 208K 2 \n__TEXT 432K 1 \ndyld private memory 1024K 1 \nmapped file 81.6M 141 \nshared memory 12K 2 \n=========== ======= ======= \nTOTAL 1.7G 213 \nTOTAL, minus reserved VM space 501.3M 213 \n",
"legacyInfo" : {
"threadTriggered" : {
}
},
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "607844aa04477260f58a8077",
"factorPackIds" : {
"SIRI_MORPHUN_ASSETS" : "6103050cbfe6dc472e1c982a"
},
"deploymentId" : 240000066
},
{
"rolloutId" : "60da5e84ab0ca017dace9abf",
"factorPackIds" : {
},
"deploymentId" : 240000008
},
{
"rolloutId" : "602ad4dac86151000cf27e46",
"factorPackIds" : {
"SIRI_DICTATION_ASSETS" : "6193d03f2171a2330e561dfc"
},
"deploymentId" : 240000303
},
{
"rolloutId" : "601d9415f79519000ccd4b69",
"factorPackIds" : {
"SIRI_TEXT_TO_SPEECH" : "621d4d0f680160486b9e1c98"
},
"deploymentId" : 240000412
},
{
"rolloutId" : "60356660bbe37970735c5624",
"factorPackIds" : {
},
"deploymentId" : 240000027
},
{
"rolloutId" : "5ffde50ce2aacd000d47a95f",
"factorPackIds" : {
},
"deploymentId" : 240000123
},
{
"rolloutId" : "5fc94383418129005b4e9ae0",
"factorPackIds" : {
},
"deploymentId" : 240000295
}
],
"experiments" : [
]
}
}
===== Log before crash start =====
Startup Messages
---
notes | available bundle cache has not been initialized yet
Updating list of available bundles failed: Internal Server Error
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/hannahdoherty/Downloads/PA14_05600_a6fa2.result/PA14_05600_a6fa2_unrelaxed_rank_5_model_4.pdb
Chain information for PA14_05600_a6fa2_unrelaxed_rank_5_model_4.pdb #1
---
Chain | Description
A | No description available
> open /Users/hannahdoherty/Downloads/6z3n.cif
Summary of feedback from opening /Users/hannahdoherty/Downloads/6z3n.cif
---
notes | Fetching CCD ACT from http://ligand-
expo.rcsb.org/reports/A/ACT/ACT.cif
Fetching CCD NI from http://ligand-expo.rcsb.org/reports/N/NI/NI.cif
Fetching CCD GOL from http://ligand-expo.rcsb.org/reports/G/GOL/GOL.cif
6z3n.cif title:
Apo Structure of a Hydrolase from Pseudomonas aeruginosa PAO1 [more info...]
Chain information for 6z3n.cif #2
---
Chain | Description | UniProt
AAA BBB CCC DDD | Hydrolase | Q9I686_PSEAE
Non-standard residues in 6z3n.cif #2
---
ACT — acetate ion
GOL — glycerol (glycerin; propane-1,2,3-triol)
NI — nickel (II) ion
6z3n.cif mmCIF Assemblies
---
1| author_defined_assembly
2| author_defined_assembly
> view #2 clip false
> show atoms
> hide atoms
> show cartoons
> hide cartoons
> show cartoons
> style stick
Changed 7669 atom styles
> style stick
Changed 7669 atom styles
> ui tool show "Selection Inspector"
> ui tool show Matchmaker
> matchmaker #!2 to #1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker PA14_05600_a6fa2_unrelaxed_rank_5_model_4.pdb, chain A (#1) with
6z3n.cif, chain AAA (#2), sequence alignment score = 942.6
RMSD between 174 pruned atom pairs is 0.578 angstroms; (across all 177 pairs:
0.744)
> select #2
6216 atoms, 5767 bonds, 14 pseudobonds, 1281 residues, 2 models selected
> show #!2 target m
> select #2/AAA:8-184
1408 atoms, 1439 bonds, 177 residues, 1 model selected
> select #2/BBB:8-184
1408 atoms, 1439 bonds, 177 residues, 1 model selected
> hide sel cartoons
> select #2/CCC:8-184
1408 atoms, 1439 bonds, 177 residues, 1 model selected
> hide sel cartoons
> select #2/DDD:8-184
1408 atoms, 1439 bonds, 177 residues, 1 model selected
> hide sel cartoons
> select #1
1453 atoms, 1484 bonds, 184 residues, 1 model selected
> hide #!2 models
> show #!2 models
> show #1 target m
> view #1 clip false
> color #2 #ec57cc transparency 0
> color #1 #54d7a8 transparency 0
> hide #1 models
> select #2/BBB:8-184
1408 atoms, 1439 bonds, 177 residues, 1 model selected
> show sel cartoons
===== Log before crash end =====
Log:
Startup Messages
---
note | available bundle cache has not been initialized yet
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-18.3.5
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,2
Processor Name: Quad-Core Intel Core i7
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 512 KB
L3 Cache: 8 MB
Hyper-Threading Technology: Enabled
Memory: 32 GB
System Firmware Version: 1715.60.5.0.0 (iBridge: 19.16.10647.0.0,0)
OS Loader Version: 540.60.2~89
Software:
System Software Overview:
System Version: macOS 12.1 (21C52)
Kernel Version: Darwin 21.2.0
Time since boot: 10 days 4:13
Graphics/Displays:
Intel Iris Plus Graphics:
Chipset Model: Intel Iris Plus Graphics
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x8a53
Revision ID: 0x0007
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Component: | Unassigned → Depiction |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash showing ribbons |
comment:2 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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Likely graphics driver crash, Intel Mac, no C traceback symbol names.