![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Oct 8, 2023:
- 11:06 PM Ticket #9936 (name 'api_call_headers' is not defined) created by
- […]
- 8:14 PM Ticket #9935 (MemoryError opening mmCIF) created by
- […]
- 8:10 PM Ticket #9934 (Crash while asking to register) created by
- […]
- 8:01 PM Ticket #9933 (MemoryError opening mmCIF) created by
- […]
- 8:01 PM Ticket #9932 (MemoryError saving session) created by
- […]
- 6:47 PM Ticket #9931 (Blast: self.job.model_name is None) created by
- […]
- 3:21 PM Ticket #9930 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 7:45 AM Ticket #9929 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 7:13 AM Ticket #9928 (Graphics crash, macOS 13.0.1, Intel Iris Plus Graphics 655) created by
- […]
- 5:36 AM Ticket #9927 (MemoryError opening mmCIF) created by
- […]
Oct 7, 2023:
- 5:03 AM Ticket #9926 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 4:21 AM Ticket #9925 (Restore new session in old ChimeraX) created by
- […]
Oct 6, 2023:
- 7:34 PM Ticket #9924 (Unable to restore objects of NewerVersionQuery class) created by
- […]
- 7:09 PM Ticket #9923 (LookSee meeting incompatible version warning not shown) created by
- The LookSee meeting check for incompatible LookSee versions does not …
- 7:06 PM Ticket #9922 (LookSee meeting does not handle two models with same name) created by
- If I open two copies of a model as LookSee meeting host, then close …
- 2:16 PM Ticket #9916 (QRhiGles2: Failed to make context current) closed by
- can't reproduce: QOpenGLContext::makeCurrent() called with non-opengl surface …
- 2:13 PM Ticket #9914 (Error in glClear) closed by
- can't reproduce: OpenGL errors showing status messages at startup. Not clear why.
- 2:11 PM Ticket #9913 (Numpy memory array during vop zone) closed by
- nonchimerax: Not much memory being used but failed allocating 50 Mbytes.
- 11:59 AM Ticket #9912 (Cannot reassign secondary structure) closed by
- not a bug: Hi Graham, There are two residue attributes relevant to secondary …
- 11:46 AM Ticket #9921 (Allow saving LookingGlass images) closed by
- fixed: Done. Added option saveQuiltImage to lookingglass command, for …
- 11:41 AM Ticket #9921 (Allow saving LookingGlass images) created by
- On Oct 4, 2023, at 10:18 PM, Gokhan via ChimeraX-users wrote: Hi, …
- 11:41 AM Ticket #9919 (MemoryError opening mmCIF files) closed by
- duplicate
- 11:02 AM Ticket #9920 (Turning off plane guidelines shouldn't reset the viewers to the ...) created by
- 10:18 AM Ticket #9919 (MemoryError opening mmCIF files) created by
- […]
- 9:46 AM Ticket #9918 (Crash in event loop) closed by
- can't reproduce
- 8:50 AM Ticket #9918 (Crash in event loop) created by
- […]
- 8:16 AM Ticket #9917 (MD Viewer: list index out of range) created by
- […]
- 5:35 AM Ticket #9916 (QRhiGles2: Failed to make context current) created by
- […]
- 2:23 AM Ticket #9915 (PICKLUSTER: not all models have .chains) created by
- […]
- 12:00 AM Ticket #9914 (Error in glClear) created by
- […]
Oct 5, 2023:
- 9:23 PM 2023-10-5 edited by
- (diff)
- 8:41 PM Ticket #9913 (Numpy memory array during vop zone) created by
- […]
- 6:09 PM 2023-10-5 edited by
- (diff)
- 4:46 PM Ticket #9912 (Cannot reassign secondary structure) created by
- […]
- 2:13 PM Ticket #9903 (Graphics crash, macOS 11.7.3, Intel Iris) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:47 AM Ticket #9906 ('BlastProteinJob' object has no attribute '_status') closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/c32d1540d76356ff1cf8d0678278f3 …
- 10:45 AM Ticket #9907 (Histogram: operands could not be broadcast together with shapes) closed by
- duplicate
- 9:38 AM Ticket #9911 (Erratic EMDB download speeds) created by
- The download speed of an EMDB map can vary by a factor of 10 or 100 …
- 8:23 AM Ticket #9910 (Missing chain objects) created by
- […] 5b04_rebuilt.cif
- 6:25 AM Ticket #9909 (Slow log update) created by
- […]
- 2:50 AM Ticket #9908 (Toolbar redraw issue) created by
- […] Screenshot 2023-10-05 104452.png
- 1:21 AM Ticket #9907 (Histogram: operands could not be broadcast together with shapes) created by
- […]
Oct 4, 2023:
- 6:44 PM Ticket #9906 ('BlastProteinJob' object has no attribute '_status') created by
- […]
- 6:34 PM Ticket #9905 (LookSee meeting does not remove hand controllers when participant leaves) created by
- In a two person LookSee meeting if the non-host participant leaves the …
- 4:11 PM Ticket #9904 (Starting a segmentation in 3d then switching to orthoplanes causes ...) created by
- It used to give a traceback, but now when we switch from 3d back to …
- 3:38 PM Ticket #9800 (LookSee 3 person meeting disconnects when model closed) closed by
- fixed: Fixed in LookSee v8. The send_newly_closed_models() routine was …
- 1:31 PM Ticket #9903 (Graphics crash, macOS 11.7.3, Intel Iris) created by
- […]
- 12:40 PM Ticket #9900 (glDrawBuffer: invalid operation) closed by
- can't reproduce: Maybe has to do with lost OpenGL context after computer wakes from …
- 12:39 PM Ticket #9896 (glDrawBuffer: invalid operation) closed by
- can't reproduce: User says in description: "I started chimerax normally from the …
- 11:08 AM Ticket #9901 (Error in TOML example bundle Makefile) closed by
- fixed: [https://github.com/RBVI/ChimeraX-Bundle-Template-TOML/blob/main/Makefi …
- 10:32 AM Ticket #9000 (Use finer triangulations in NIH3D scripts) closed by
- fixed: Bonds and pseudobonds now use cross sections as requested by NIAID
- 10:30 AM Ticket #9902 (Unknown crash) closed by
- can't reproduce
- 10:27 AM Ticket #9902 (Unknown crash) created by
- […]
- 9:13 AM Ticket #9901 (Error in TOML example bundle Makefile) created by
- Note that on Windows $(CHIMERAX_EXE) uses the …
- 9:06 AM Ticket #9900 (glDrawBuffer: invalid operation) created by
- […]
- 6:10 AM Ticket #9899 (MemoryError opening mmCIF files) created by
- […]
- 4:49 AM Ticket #9898 (ArtiaX: not all parameters written out) created by
- […] Selected_from_MGS003_T1_ts_003_ref55S.star
Oct 3, 2023:
- 4:41 PM Ticket #9897 (bundle_tutorial.zip broken) created by
- The "zip-format file" link in the second section of this page: …
- 2:17 PM Ticket #9896 (glDrawBuffer: invalid operation) created by
- […]
- 11:53 AM Dev2023-10-9 edited by
- (diff)
- 11:51 AM Dev2023-10-9 edited by
- (diff)
- 11:33 AM Dev2023-10-9 edited by
- (diff)
- 11:27 AM Tickets #8575,6756,6757,6797,6802,6817,6884,6910,7374,7667,7875,8419,8463,8675,8704,8875,9095,9209,9500,9840,9841,9842 batch updated by
- fixed
- 11:26 AM Ticket #9893 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics 645) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:18 AM Dev2023-10-9 created by
- 11:17 AM 2023-10-5 created by
- 11:15 AM DeveloperMeetings edited by
- (diff)
- 8:54 AM Ticket #9894 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 2:40 AM Ticket #9895 (MemoryError opening mmCIF files) created by
- […]
- 1:33 AM Ticket #9894 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Oct 2, 2023:
- 7:46 PM Dev2023-10-2 edited by
- (diff)
- 7:44 PM Dev2023-10-2 edited by
- (diff)
- 1:49 PM Ticket #9893 (Graphics crash, macOS 13.2.1, Intel Iris Plus Graphics 645) created by
- […]
- 11:53 AM Ticket #9892 (lighting glitches during "fly" command) closed by
- fixed: Fixed. The fly command interpolated rotation positions as quaternions …
- 11:01 AM Ticket #9890 (Error in glClear) closed by
- can't reproduce: OpenGL error in expose event for status line at startup on Windows. …
- 10:54 AM Ticket #9891 (Error in glClear) closed by
- duplicate
- 8:47 AM Ticket #9892 (lighting glitches during "fly" command) created by
- Session attached with named views v1, v2, v3 and soft lighting. If I …
- 6:53 AM Ticket #9891 (Error in glClear) created by
- […]
- 6:49 AM Ticket #9890 (Error in glClear) created by
- […]
Oct 1, 2023:
Sep 30, 2023:
Sep 29, 2023:
- 4:34 PM Ticket #9878 (NIH3D "Surface Hydrophobicity" preset not working) closed by
- fixed: Going to "sharpBoundaries false" broke coloring by hydrophobicity …
- 3:48 PM ChangeLog edited by
- (diff)
- 3:47 PM ChangeLog edited by
- (diff)
- 12:15 PM Ticket #9884 (Qt failed to get OpenGL context on Linux: QRhiGles2: Failed to make ...) closed by
- can't reproduce: It is in the Ask to Register dialog, and also the Toolshed is checking …
- 11:49 AM Ticket #9887 (Chimera-like control of model display) created by
- […]
- 11:47 AM Ticket #9883 (Secondary structure assignment) closed by
- can't reproduce: Hi Fedaa, There have been some changes to how dssp operates in order …
- 11:35 AM Ticket #9886 (Select residues between two currently selected residues) created by
- […]
- 11:35 AM Ticket #9882 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate: Duplicate of #9328
- 11:28 AM Ticket #9885 (Allow fetching EMDB map given PDB id) created by
- From: Oliver Clarke Subject: Re: [ChimeraX] #9846: Allow fetching fit …
- 11:27 AM Ticket #9884 (Qt failed to get OpenGL context on Linux: QRhiGles2: Failed to make ...) created by
- […]
- 10:49 AM Ticket #9862 (Bug Reporter string-encoding issue) closed by
- nonchimerax: I see in the bug report you have Locale: en_GB.UTF-8 Maybe that is …
- 10:31 AM NIAID2023 edited by
- (diff)
- 10:25 AM Ticket #9871 ("D" interpreted as "default" in label command) closed by
- fixed: Fixed. That is obscure, but there was already support to not allow …
- 9:43 AM Ticket #9883 (Secondary structure assignment) created by
- […]
- 4:22 AM Ticket #9882 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 2:55 AM Ticket #9881 (Title bar missing) created by
- […]
Sep 28, 2023:
- 5:30 PM Ticket #9880 (Open MRC volume series using a GUI) created by
- […]
- 4:19 PM Ticket #9879 (Further web services improvements) created by
- Investigate dynamic scaling. Still need some kind of solution for …
- 4:18 PM Ticket #9483 (No error message when timeout exceeded) closed by
- fixed: It looks like the script got changed to 20 workers at some point. …
- 2:12 PM Ticket #9878 (NIH3D "Surface Hydrophobicity" preset not working) created by
- As per summary
- 2:05 PM Ticket #9874 (MemoryError opening mmCIF) closed by
- duplicate
- 2:02 PM Ticket #9872 (MemoryError opening mmCIF) closed by
- duplicate
- 1:38 PM NIAID2023 edited by
- (diff)
- 1:28 PM NIAID2023 edited by
- (diff)
- 1:27 PM NIAID2023 edited by
- (diff)
- 12:48 PM Ticket #9870 (MemoryError opening mmCIF) closed by
- duplicate
- 12:47 PM Ticket #9877 (Cannot uninstall bundle) created by
- […]
- 12:46 PM Ticket #9876 (Installing a bundle reports "No bundles were installed") created by
- […]
- 10:42 AM Ticket #9868 (Failed to lock QIOSurfaceGraphicsBuffer) closed by
- can't reproduce: 1.4; seems to be a crash in QWebEngine
- 10:21 AM Ticket #9864 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:08 AM Ticket #9875 (Bug Reporter deprecation warning) created by
- […]
- 9:01 AM Ticket #9874 (MemoryError opening mmCIF) created by
- […]
- 7:32 AM Ticket #9873 (Installed version number not updated) created by
- […]
- 5:17 AM Ticket #9872 (MemoryError opening mmCIF) created by
- […]
- 4:49 AM Ticket #9871 ("D" interpreted as "default" in label command) created by
- […]
- 4:18 AM Ticket #9870 (MemoryError opening mmCIF) created by
- […]
- 1:36 AM Ticket #9869 (Restoring new session in old ChimeraX) created by
- […]
Sep 27, 2023:
- 2:41 PM Ticket #9868 (Failed to lock QIOSurfaceGraphicsBuffer) created by
- […]
- 2:30 PM Ticket #9867 (Feature/Region browser requests) created by
- 3) The treatment of sequence-feature regions is not as informative and …
- 1:59 PM Ticket #9866 (Region/feature browsers need to react to non-self-generated region changes) created by
- Changes in color, display, etc.
- 1:40 PM Ticket #9865 (Have child windows have independent "dockability" status) created by
- (1) region browser kept docking annoyingly but when I unchecked …
- 1:38 PM Ticket #9863 (Crash in Qt event loop after opening MRC files, Toolshed check also running) closed by
- can't reproduce: No clues as to what caused the crash.
- 1:14 PM phenix-9-27-23 edited by
- (diff)
- 1:14 PM phenix-9-27-23 edited by
- (diff)
- 11:53 AM phenix-9-27-23 created by
- 11:24 AM Ticket #9864 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 11:22 AM Features edited by
- (diff)
- 10:43 AM Ticket #9861 (Clipper installation) reopened by
- There is a bug in the toolshed database right now that might be …
- 10:27 AM Ticket #9861 (Clipper installation) closed by
- limitation: The pip binary doesn't know about the ChimeraX toolshed. You need to …
- 10:01 AM Ticket #9860 (Unknown crash) closed by
- can't reproduce: Probably XMAS related
- 9:58 AM Ticket #9858 (Crash processing atomic changes data) closed by
- can't reproduce: Hi Bruno, Thanks for reporting this problem. Unfortunately it …
- 9:43 AM Ticket #9857 (Problem installing ISOLDE) closed by
- duplicate: Duplicate of #9856
- 9:39 AM Ticket #9855 (Crash showing XMAS tool) closed by
- duplicate: Duplicate of #9841
- 9:37 AM Ticket #9854 (Unknown crash) closed by
- can't reproduce: Possibly XMAS related
- 9:36 AM Ticket #9853 (Crash showing XMAS tool) closed by
- duplicate: Duplicate of #9841
- 9:34 AM Ticket #9863 (Crash in Qt event loop after opening MRC files, Toolshed check also running) created by
- […]
- 9:33 AM Ticket #9852 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:12 AM Ticket #9862 (Bug Reporter string-encoding issue) created by
- […]
- 8:11 AM Ticket #9861 (Clipper installation) created by
- […]
- 6:45 AM Ticket #9860 (Unknown crash) created by
- […]
- 6:41 AM Ticket #9782 (Add clipper command documentation online) closed by
- fixed: Done. Clipper documentation is now at …
- 6:38 AM Ticket #9859 ("positive contour" mousemode) created by
- […]
- 4:17 AM Ticket #9858 (Crash processing atomic changes data) created by
- […]
- 2:53 AM Ticket #9857 (Problem installing ISOLDE) created by
- […]
- 2:53 AM Ticket #9856 (Problem installing ISOLDE) created by
- […]
- 2:51 AM Ticket #9855 (Crash showing XMAS tool) created by
- […]
- 2:29 AM Ticket #9854 (Unknown crash) created by
- […]
- 2:25 AM Ticket #9853 (Crash showing XMAS tool) created by
- […]
Sep 26, 2023:
- 8:59 PM Ticket #9852 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 6:25 PM Ticket #9848 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) closed by
- nonchimerax: This crash was in Apple's Radeon graphics driver. Unfortunately …
- 6:04 PM Ticket #3708 (EMDB initial contour level) closed by
- fixed: Done. Fetching an EMDB map now always uses the recommended contour …
- 5:52 PM Ticket #9846 (Allow fetching fit PDB models together with EMDB maps) closed by
- fixed: Done. You can fetch the fit atomic models with EMDB maps using the …
- 5:42 PM Ticket #9851 (OpenGL error created 3D texture larger than maximum size of 2048) created by
- […]
- 1:32 PM Ticket #9850 (Issues when Segmentations tool is already open w/o data when new DICOM ...) created by
- This situation occurs because closing the previous DICOM data does not …
- 1:28 PM Ticket #9849 (DICOM: Segmentations list not cleared when all models closed) created by
- I guess the summary says it all. In itself, not that bad, but there …
- 11:54 AM Ticket #9845 (Region browser check box bug) closed by
- fixed
- 10:38 AM Dev2023-10-2 created by
- 10:37 AM 2023-9-28 created by
- 10:36 AM DeveloperMeetings edited by
- (diff)
- 10:25 AM Ticket #9847 (SEQCROW: file-reader panel: KeyError: 'all_geom') closed by
- duplicate: Duplicate of #9832
- 8:46 AM Ticket #9848 (Graphics crash, macOS 10.15.7, Radeon Pro Vega 48) created by
- […]
- 1:08 AM Ticket #9847 (SEQCROW: file-reader panel: KeyError: 'all_geom') created by
- […]
Sep 25, 2023:
- 6:19 PM Ticket #9846 (Allow fetching fit PDB models together with EMDB maps) created by
- […]
- 3:54 PM Ticket #9837 (Crashed in Qt event loop after opening a session) closed by
- can't reproduce: Crashed in Qt event loop after opening a session. No clues. When …
- 3:34 PM Dev2023-9-25 edited by
- (diff)
- 3:00 PM Ticket #9831 (traceback when opening session without combining existing combined session) closed by
- fixed: Sequence alignment management data wasn't being correctly updated when …
- 2:36 PM Ticket #9845 (Region browser check box bug) created by
- […]
- 2:15 PM Ticket #9835 (UnicodeDecodeError reading PDBQT file) closed by
- fixed: Fix: …
- 2:00 PM Ticket #9844 (Crash in garbage collection) closed by
- duplicate: _cleanup was removed for just this reason
- 1:49 PM Ticket #9844 (Crash in garbage collection) created by
- […]
- 1:46 PM Ticket #9843 (label listfonts: QFontDatabase(a0: QFontDatabase): not enough arguments) closed by
- duplicate: Fixed two days after the reporting version was made.
- 1:33 PM Ticket #9843 (label listfonts: QFontDatabase(a0: QFontDatabase): not enough arguments) created by
- […]
- 1:11 PM Ticket #9839 (Crash in garbage collection during new object allocation) closed by
- can't reproduce
- 1:08 PM Ticket #9508 (TypeError setting framerate) closed by
- fixed
- 1:08 PM Ticket #9838 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Klara, Thanks for reporting this problem. This is a bug in the Qt …
- 1:03 PM Ticket #9232 (Wrong pandas installed) closed by
- not a bug
- 1:03 PM Ticket #9272 (Bundles not installing) closed by
- fixed
- 1:00 PM Ticket #9836 (MemoryError opening mmCIF) closed by
- duplicate
- 12:39 PM Ticket #9833 (Graphics crash, macOS 13.5.2, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 12:37 PM Ticket #9826 (Crash recording movie) closed by
- nonchimerax: ChimeraX crashed in your graphics driver while trying to create an …
- 12:27 PM Ticket #9827 (Crash in graphics driver, Apple M1, macOS 13.5.2, huge map) closed by
- nonchimerax: Crash in Apple M1 graphics driver, probably due to allocating a ton of …
- 11:56 AM Ticket #9834 (Coulombic: 'Atom' object has no attribute 'charge') closed by
- can't reproduce: Seems somehow related to the >100,000 atom PDB file, but would need …
- 11:29 AM Ticket #9830 (Crash showing open dialog) closed by
- can't reproduce
- 11:28 AM Ticket #9829 (XMAS: crash in ~QGridLayout()) closed by
- duplicate
- 11:25 AM Ticket #9828 (Port RR Distance Maps) closed by
- duplicate: Hi Michael, Atom specs can have spaces in them, and therefore …
- 10:43 AM Ticket #9824 (Crash in Residues.secondary_structure_ids) closed by
- can't reproduce: Would need a reproducible test case
- 8:34 AM Ticket #9842 (XMAS trying to set attribute of non-existent pseudobonds) created by
- […]
- 8:27 AM Ticket #9841 (Crash showing XMAS tool) created by
- […]
- 8:18 AM Ticket #9840 (XMAS: 'Tabular' object has no attribute 'peptide_pairs') created by
- […]
- 7:41 AM Ticket #9839 (Crash in garbage collection during new object allocation) created by
- […]
- 3:29 AM Ticket #9838 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 2:32 AM Ticket #9837 (Crashed in Qt event loop after opening a session) created by
- […]
Sep 24, 2023:
- 11:42 PM Ticket #9836 (MemoryError opening mmCIF) created by
- […]
- 10:50 PM Ticket #9835 (UnicodeDecodeError reading PDBQT file) created by
- […]
- 1:52 PM Ticket #9834 (Coulombic: 'Atom' object has no attribute 'charge') created by
- […]
- 9:20 AM Ticket #9833 (Graphics crash, macOS 13.5.2, Intel Iris Plus Graphics) created by
- […]
Sep 23, 2023:
Sep 22, 2023:
- 5:02 PM Ticket #9831 (traceback when opening session without combining existing combined session) created by
- […]
- 4:55 PM ChangeLog edited by
- (diff)
- 4:53 PM ChangeLog edited by
- (diff)
- 9:45 AM Ticket #9830 (Crash showing open dialog) created by
- […]
- 6:13 AM Ticket #9829 (XMAS: crash in ~QGridLayout()) created by
- […]
- 4:58 AM Ticket #9828 (Port RR Distance Maps) created by
- […]
- 4:13 AM Ticket #9827 (Crash in graphics driver, Apple M1, macOS 13.5.2, huge map) created by
- […]
Sep 21, 2023:
- 8:33 PM Ticket #9826 (Crash recording movie) created by
- […]
- 5:38 PM ChangeLog edited by
- (diff)
- 5:36 PM ChangeLog edited by
- (diff)
- 5:35 PM ChangeLog edited by
- (diff)
- 5:35 PM ChangeLog edited by
- (diff)
- 5:31 PM Ticket #9258 (Combine sessions) closed by
- fixed: In tomorrow's daily build you will be able to combine a session file …
- 4:54 PM Ticket #9825 (Quest VR is not smooth) created by
- […]
- 3:42 PM Ticket #9823 (Mac scrollbar behavior) closed by
- fixed: The startup-commands widget sets its initial width/height via a …
- 3:03 PM Ticket #9824 (Crash in Residues.secondary_structure_ids) created by
- […]
- 2:43 PM Ticket #9823 (Mac scrollbar behavior) reopened by
- I still don't know that there's anything I can do about this (probably …
- 2:19 PM Ticket #9823 (Mac scrollbar behavior) closed by
- limitation
- 2:19 PM Ticket #9823 (Mac scrollbar behavior) reopened by
- 2:05 PM Ticket #9823 (Mac scrollbar behavior) closed by
- not a bug: Hi Oli, Pretty sure this is a Mac "feature". The startup-commands …
- 1:27 PM Ticket #9822 (Getting this error upon hitting "Accept" in the user agreement; tried ...) closed by
- can't reproduce: Hi Shallee, Thanks for reporting this problem. I just tried this and …
- 1:23 PM Ticket #9821 (Crash in chain_trace_atoms) closed by
- can't reproduce: Performing the same "sym" command on the regular 6L2T entry and asking …
- 1:14 PM Ticket #9820 (MemoryError opening mmCIF) closed by
- duplicate
- 1:08 PM Ticket #9818 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce
- 12:49 PM 2023-9-21 edited by
- (diff)
- 11:58 AM Ticket #9823 (Mac scrollbar behavior) created by
- […]
- 10:30 AM Ticket #9459 (Read DICOM files that don't have .dcm (or any) extension) closed by
- fixed: This should be working as of …
- 4:51 AM Ticket #9822 (Getting this error upon hitting "Accept" in the user agreement; tried ...) created by
- […] [[Image(...)]]
- 3:28 AM Ticket #9821 (Crash in chain_trace_atoms) created by
- […]
- 12:11 AM Ticket #9820 (MemoryError opening mmCIF) created by
- […]
Sep 20, 2023:
- 5:35 PM Ticket #9819 (Send to Quest fails if headset sleeps) created by
- […]
- 4:17 PM Ticket #9559 (DICOM Segmentations 2D views should show overlay of active ...) closed by
- fixed: Done. …
- 4:12 PM Ticket #9818 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 3:25 PM Ticket #9817 (Second drag-and-drop produces KeyError) closed by
- can't reproduce: This same error was reported 2 weeks ago, ticket #9712. It looks like …
- 1:05 PM Ticket #9815 (Old session requires State methods from ProviderManager) closed by
- duplicate
- 12:58 PM Ticket #9817 (Second drag-and-drop produces KeyError) created by
- […]
- 12:57 PM Ticket #7094 (RFE: Persist tasks across ChimeraX sessions) closed by
- fixed: Job restore code merged to develop
- 12:07 PM Ticket #9814 (name 'api_call_headers' is not defined) closed by
- duplicate
- 12:07 PM Ticket #9814 (name 'api_call_headers' is not defined) reopened by
- 12:07 PM Ticket #9814 (name 'api_call_headers' is not defined) closed by
- fixed: This has been fixed in the daily build.
- 11:58 AM Ticket #9813 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) closed by
- duplicate: Hi Ofer, Thanks for reporting this problem. It has been fixed in …
- 11:35 AM Ticket #9810 (EMDB TimeoutError) closed by
- nonchimerax: The error messages says the EMDB did not respond while fetching EMDB …
- 11:35 AM Ticket #9812 (Problems with .xtc trajectory visualization) closed by
- can't reproduce: Hi Samira, Thanks for reporting this problem. My reading of the …
- 11:01 AM Ticket #9811 (Crash handling text input) closed by
- can't reproduce
- 10:32 AM Ticket #9816 (Old session requires State methods from ProviderManager) created by
- […]
- 10:31 AM Ticket #9815 (Old session requires State methods from ProviderManager) created by
- […]
- 5:15 AM Ticket #9814 (name 'api_call_headers' is not defined) created by
- […]
- 5:08 AM Ticket #9813 (Struct Measure: wrapped C/C++ object of type QLabel has been deleted) created by
- […]
- 3:30 AM Ticket #9812 (Problems with .xtc trajectory visualization) created by
- […]
- 2:36 AM Ticket #9811 (Crash handling text input) created by
- […]
Sep 19, 2023:
- 4:41 PM Ticket #9810 (EMDB TimeoutError) created by
- […]
- 3:24 PM Ticket #9807 (patching pyopenxr failed on windows) closed by
- fixed
- 2:17 PM Ticket #9809 (MemoryError opening mmCIF files) created by
- […]
- 12:26 PM Ticket #9808 (glGetFramebufferAttachmentParameteriv: invalid enumerant) closed by
- nonchimerax: Graphics driver bug with ATI Radeon HD 3450 graphics card from 2008 …
- 11:43 AM Ticket #9808 (glGetFramebufferAttachmentParameteriv: invalid enumerant) created by
- […]
- 11:30 AM Ticket #6386 (Avoid opening a zillion alignments) closed by
- fixed
- 11:09 AM Dev2023-9-25 created by
- 11:06 AM 2023-9-14 edited by
- (diff)
- 11:06 AM 2023-9-21 edited by
- (diff)
- 11:06 AM 2023-9-21 edited by
- (diff)
- 11:06 AM 2023-9-21 created by
- 11:05 AM DeveloperMeetings edited by
- (diff)
- 10:30 AM Ticket #9807 (patching pyopenxr failed on windows) created by
- Doing a clean install to see if it clears up some other weird behavior …
- 10:16 AM Ticket #9806 (Crash opening mmCIF file) closed by
- can't reproduce: 1.2.4
- 10:11 AM Ticket #9805 (Crash opening mmCIF file) closed by
- can't reproduce: 1.2.4
- 10:10 AM Ticket #9804 (Crash opening mmCIF file) closed by
- can't reproduce: Version 1.2.4
- 10:09 AM Ticket #9803 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:08 AM Ticket #9802 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 8:49 AM Ticket #9806 (Crash opening mmCIF file) created by
- […]
- 8:48 AM Ticket #9805 (Crash opening mmCIF file) created by
- […]
- 8:48 AM Ticket #9804 (Crash opening mmCIF file) created by
- […]
- 2:33 AM Ticket #9797 (Crash in "isolde start") closed by
- can't reproduce: Looks like it crashed while loading a pickle file in a separate …
- 12:37 AM Ticket #9803 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Sep 18, 2023:
- 4:34 PM Dev2023-9-18 edited by
- (diff)
- 2:49 PM Ticket #9791 (cartoon style unnecessarily computes ribbon(?)) closed by
- duplicate: The basic problem is that secondary-structure calculation is very …
- 1:49 PM Ticket #9802 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 1:36 PM Ticket #9798 (Restore new session in old ChimeraX) closed by
- limitation: Hi Anamika, Although you can restore old sessions in newer versions …
- 12:42 PM Ticket #9801 (LookSee meeting file transfer very slow, 20 seconds) created by
- In a LookSee 2 or 3 person meeting at SLAC with Mike Schmid and JJ on …
- 12:32 PM Ticket #9800 (LookSee 3 person meeting disconnects when model closed) created by
- In testing 3-person LookSee (version 6) meetings at SLAC on September …
- 12:17 PM Ticket #9799 (Make sure 5 character CCD templates in mmCIF files work) created by
- The PDB expects to start using 5 character chemical component names by …
- 12:11 PM Ticket #9796 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 12:09 PM Ticket #9795 (MemoryError opening mmCIF) closed by
- duplicate
- 12:08 PM Ticket #9794 (Maestro: KeyError: 'i_m_residue_number') closed by
- can't reproduce: Duplicate of #9215
- 12:03 PM Ticket #9793 (ArtiaX: arrays used as indices must be of integer (or boolean) type) closed by
- duplicate: Duplicate of #8706
- 11:58 AM Ticket #9792 (Rotamer library needs access to ui_name) closed by
- duplicate: Hi Dawid, Thanks for reporting this problem. It has been fixed in …
- 7:49 AM Ticket #9798 (Restore new session in old ChimeraX) created by
- […]
- 7:20 AM Ticket #9797 (Crash in "isolde start") created by
- […]
- 1:48 AM Ticket #9796 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Sep 17, 2023:
- 5:05 PM Ticket #9795 (MemoryError opening mmCIF) created by
- […]
- 7:52 AM Ticket #9794 (Maestro: KeyError: 'i_m_residue_number') created by
- […]
- 6:49 AM Ticket #9793 (ArtiaX: arrays used as indices must be of integer (or boolean) type) created by
- […]
Sep 16, 2023:
Sep 15, 2023:
- 5:17 PM Ticket #9791 (cartoon style unnecessarily computes ribbon(?)) created by
- With the biological assembly of 1m4x (open pdbe_bio:1m4x maxa 1; 1.6 …
- 10:38 AM Ticket #9790 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Hi Dewight, Thanks for reporting this problem. The information in …
- 10:30 AM Ticket #9789 (MemoryError opening mmCIF files) closed by
- duplicate
- 10:23 AM Ticket #9788 (Crash in garbage collection) closed by
- can't reproduce: Hi Daniel, Thanks for reporting this problem. The crash is in …
- 9:16 AM Ticket #9784 (al2co failed) closed by
- can't reproduce: I don't I want to try/except the CalledProcessError. I'd rather get …
- 8:21 AM Ticket #9790 (Crash showing Rapid Access at startup) created by
- […]
- 7:07 AM Ticket #9789 (MemoryError opening mmCIF files) created by
- […]
- 5:53 AM Ticket #9788 (Crash in garbage collection) created by
- […]
- 2:51 AM Ticket #9787 (ArtiaX session save: Unknown class name 'ArtiaX') created by
- […]
- 12:47 AM Ticket #9778 (StarMap: Rosetta executables not found) closed by
- not a bug: This message is a warning that the external Rosetta software suite was …
Sep 14, 2023:
- 5:14 PM Ticket #9786 (Release Clipper version for ChimeraX with Python 3.11) created by
- It would be useful to have Clipper available on the Toolshed for …
- 4:27 PM Ticket #9776 (Crash calculating contour surface) closed by
- can't reproduce: Segmentation fault computing contour surface in ChimeraX 1.3. Maybe …
- 3:51 PM Ticket #9785 (Allow dot surfaces with dot size > 1 pixel.) created by
- […]
- 12:43 PM Ticket #9784 (al2co failed) created by
- […]
- 12:26 PM Ticket #9783 (Graphics crash, macOS 10.15.7, Intel HD Graphics 6000) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 12:23 PM 2023-9-14 edited by
- (diff)
- 12:19 PM Ticket #9781 (Crash in event loop while connecting to Toolshed) closed by
- can't reproduce
- 12:15 PM Ticket #9779 (Maestro using charmap encoding on Windows) closed by
- fixed: Fix: …
- 11:05 AM Ticket #9783 (Graphics crash, macOS 10.15.7, Intel HD Graphics 6000) created by
- […]
- 10:58 AM Ticket #9782 (Add clipper command documentation online) created by
- […]
- 10:03 AM Ticket #9781 (Crash in event loop while connecting to Toolshed) created by
- […]
- 7:19 AM Ticket #9780 (Draw tomogram plane: float division by zero) created by
- […]
- 5:32 AM Ticket #9779 (Maestro using charmap encoding on Windows) created by
- […]
- 5:27 AM Ticket #9778 (StarMap: Rosetta executables not found) created by
- […]
Sep 13, 2023:
- 11:51 PM Ticket #9777 (MemoryError opening mmCIF) created by
- […]
- 7:34 PM Ticket #9775 (Pseudobond drawing is None) closed by
- fixed: Fixed. The pseudobondSides settings was giving an error when …
- 7:13 PM Ticket #9773 (No space left on device saving movie) closed by
- nonchimerax: Same user reported this earlier today.
- 7:12 PM Ticket #9772 (Problem saving views in session: numpy array used as boolean) closed by
- duplicate: This was fixed on May 10 in the ChimeraX daily build. Bug is in …
- 6:59 PM Ticket #9762 (No space left on device recording a movie) closed by
- nonchimerax: Could catch this error and give a clearer error message. But it is …
- 4:27 PM Ticket #9776 (Crash calculating contour surface) created by
- […]
- 1:49 PM Ticket #9775 (Pseudobond drawing is None) created by
- […] preset.cxc
- 12:04 PM Ticket #9774 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 11:57 AM Ticket #9771 (MemoryError opening mmCIF files) closed by
- duplicate
- 11:56 AM Ticket #9774 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 11:56 AM Ticket #9770 (Crash in event loop) closed by
- can't reproduce
- 11:54 AM Ticket #9769 (Crash showing Rapid Access at startup) closed by
- can't reproduce
- 11:47 AM Ticket #9773 (No space left on device saving movie) created by
- […]
- 11:34 AM Ticket #9766 (MemoryError opening mmCIF files) closed by
- duplicate
- 11:30 AM Ticket #9765 (Peptide not circular) closed by
- not a bug
- 10:43 AM Ticket #9764 (ArtiaX: wrapped C/C++ object of type QComboBox has been deleted) closed by
- can't reproduce: This is after a possible error in volume code, so may not be …
- 9:38 AM Ticket #9760 (Graphics crash, macOS 12.5, Apple M1 GPU) closed by
- can't reproduce: Was also using a ton of memory
- 8:14 AM Ticket #9772 (Problem saving views in session: numpy array used as boolean) created by
- […] Screenshot 2023-09-13 at 10.59.14.png
- 7:27 AM Ticket #9771 (MemoryError opening mmCIF files) created by
- […]
- 7:23 AM Ticket #9770 (Crash in event loop) created by
- […]
- 5:17 AM Ticket #9769 (Crash showing Rapid Access at startup) created by
- […]
- 2:42 AM Ticket #9768 (MemoryError opening mmCIF files) created by
- […]
- 1:56 AM Ticket #9767 (ISOLDE start sim: OpenMMException: Error compiling kernel) created by
- […]
Sep 12, 2023:
- 10:38 PM Ticket #9766 (MemoryError opening mmCIF files) created by
- […]
- 8:58 PM Ticket #9765 (Peptide not circular) created by
- […]
- 8:17 PM Ticket #9764 (ArtiaX: wrapped C/C++ object of type QComboBox has been deleted) created by
- […]
- 8:15 PM Ticket #9763 (Volume: self.data is None) created by
- […]
- 5:24 PM Ticket #9753 (LookSee moves undisplayed models) closed by
- fixed: Fixed. Only displayed models can be moved with hand controllers now. …
- 3:48 PM Ticket #9762 (No space left on device recording a movie) created by
- […]
- 2:29 PM Ticket #9761 (Add ability to set pseudobond number of cylinder sides) closed by
- fixed
- 2:23 PM Ticket #9761 (Add ability to set pseudobond number of cylinder sides) created by
- […]
- 1:42 PM Ticket #9760 (Graphics crash, macOS 12.5, Apple M1 GPU) created by
- […]
- 1:31 PM Dev2023-9-18 created by
- 1:29 PM 2023-9-14 created by
- 1:27 PM DeveloperMeetings edited by
- (diff)
- 1:16 PM Ticket #9751 (Crash in Qt event loop after opening volume series) closed by
- can't reproduce: From the Log, the user did not open any data or run any commands when …
- 1:13 PM Ticket #9759 (Command logged incorrectly) created by
- […]
- 12:35 PM Ticket #9755 (Drawing volume: object of type 'NoneType' has no len()) closed by
- fixed: Fixed. Any code that added a model with the id already set did not …
- 11:50 AM Ticket #9758 (Surface Color tool: list index out of range) closed by
- fixed: Fixed. The Surface Color panel can only display color palettes of 8 …
- 10:22 AM Ticket #9758 (Surface Color tool: list index out of range) created by
- […]
- 10:18 AM Ticket #9757 (Fly command does not work) closed by
- not a bug: Hi Kayla, The fly command was added in ChimeraX 1.2, so you need to …
- 10:13 AM Ticket #9756 (MemoryError opening mmCIF files) closed by
- duplicate
- 10:11 AM Ticket #9754 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 9:59 AM Ticket #9752 (Unknown crash) closed by
- can't reproduce
- 9:26 AM Ticket #9757 (Fly command does not work) created by
- […]
Sep 11, 2023:
- 11:07 PM Ticket #9756 (MemoryError opening mmCIF files) created by
- […]
- 10:20 PM Ticket #9755 (Drawing volume: object of type 'NoneType' has no len()) created by
- […]
- 10:15 PM Ticket #9754 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 7:31 PM Ticket #9753 (LookSee moves undisplayed models) created by
- When you drag a model by pressing the grip button, LookSee will move …
- 7:23 PM Ticket #9749 (Nucleotides assuming color RGBA is numpy array, not handling tuple) closed by
- fixed: I see this was fixed 4 days ago.
- 5:27 PM Ticket #9752 (Unknown crash) created by
- […]
- 4:28 PM Ticket #9581 (Rotamer library needs access to ui_name) closed by
- fixed
- 3:19 PM Ticket #9751 (Crash in Qt event loop after opening volume series) created by
- […]
- 2:09 PM Ticket #9750 (Write GLB: Python int too large to convert to C long) closed by
- limitation: The error says you attempted to save a GLTF file that would exceed the …
- 12:56 PM Dev2023-9-11 edited by
- (diff)
- 12:54 PM Dev2023-9-11 edited by
- (diff)
- 12:54 PM Dev2023-9-11 edited by
- (diff)
- 11:50 AM Ticket #9750 (Write GLB: Python int too large to convert to C long) created by
- […]
- 10:55 AM Ticket #9749 (Nucleotides assuming color RGBA is numpy array, not handling tuple) created by
- […]
- 10:49 AM Ticket #9745 (MOLE JSON: atom radius must be positive) closed by
- fixed: Fixed. Mole online tunnel file had a sphere with radius zero. Did …
- 10:48 AM Ticket #9748 (Write SDF format) created by
- This might be nice, because mol2 is not supported by rdkit while sdf …
- 10:40 AM Ticket #9742 (Unable to allocate memory for surface) closed by
- limitation: Surprising that a numpy memory allocation failed for just 1 Mbyte of …
- 10:06 AM Ticket #9747 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:05 AM Ticket #9746 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:01 AM Ticket #9744 (MemoryError opening mmCIF) closed by
- duplicate
- 10:00 AM Ticket #9743 (No changechains command) closed by
- not a bug: changechains first appeared in 1.5
- 9:49 AM Ticket #9735 (MemoryError opening mmCIF) closed by
- duplicate
- 9:34 AM Ticket #9747 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 9:18 AM Ticket #9746 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 7:13 AM Ticket #9745 (MOLE JSON: atom radius must be positive) created by
- […]
- 12:07 AM Ticket #9744 (MemoryError opening mmCIF) created by
- […]
Sep 10, 2023:
- 9:03 PM Ticket #9743 (No changechains command) created by
- […]
- 12:21 PM Ticket #9742 (Unable to allocate memory for surface) created by
- […]
- 1:46 AM Ticket #9741 (ArtiaX: slider: float division by zero) created by
- […]
- 12:44 AM Ticket #9740 (ArtiaX: problem loading Star file) created by
- […]
Sep 9, 2023:
Sep 8, 2023:
- 5:00 PM ChangeLog edited by
- (diff)
- 4:50 PM Ticket #9738 (LookSee shows point cloud with wrong unidirectional lighting) created by
- […] test.glb
- 3:36 PM Ticket #9736 (Opening point cloud gltf file: Second array dimension must have size ...) closed by
- fixed: Fixed. The gltf reader was trying to compute lighting normals for …
- 2:26 PM Ticket #9737 (Investigate voice-to-command interface) created by
- 1:54 PM Ticket #9736 (Opening point cloud gltf file: Second array dimension must have size ...) created by
- […]
- 1:38 PM Ticket #9735 (MemoryError opening mmCIF) created by
- […]
- 1:27 PM Ticket #9734 (Investigate lit volumetric rendering approaches) created by
- In our R01 grant we proposed add volumetric lighting (ie lighting …
- 1:22 PM Ticket #9733 (Decide on first application for UMAP visualization for high ...) created by
- In the current R01 grant we proposed support UMAP visualization of …
- 1:15 PM Ticket #9732 (Option to always show model number in label) created by
- Add preference to always show model number in atom-spec balloon for …
- 1:14 PM Ticket #9730 (Add "vr started" and "vr stopped" triggers) closed by
- fixed: Done
- 1:03 PM Dev2023-9-11 edited by
- (diff)
- 12:49 PM Ticket #9731 (Allow z axis rotation and translation by holding the ctrl key) closed by
- fixed: Done. Important to note that holding the ctrl key and then clicking …
- 12:38 PM Ticket #9731 (Allow z axis rotation and translation by holding the ctrl key) created by
- […]
- 11:57 AM Ticket #9662 (build start smiles) closed by
- fixed: Providers without "build start" subcommands now issue a message saying …
- 11:57 AM Ticket #9729 (Open two session at once) closed by
- duplicate: You are right ChimeraX always closes the previous session when you …
- 11:45 AM Ticket #9730 (Add "vr started" and "vr stopped" triggers) created by
- Zach requested new triggers to indicate when VR started or stopped to …
- 9:18 AM Ticket #9727 (Restore new session in old ChimeraX) closed by
- limitation
- 1:16 AM Ticket #9729 (Open two session at once) created by
- […]
Note:
See TracTimeline
for information about the timeline view.
