name 'api_call_headers' is not defined

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open D:\Draft_03\C5a-C5aR1-Barrs1\Dock03\run10_004.pdb format pdb

Summary of feedback from opening
D:\Draft_03\C5a-C5aR1-Barrs1\Dock03\run10_004.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK BIOVIA PDB file  
  
Ignored bad PDB record found on line 2  
REMARK Created: 2023-10-09T10:40:07Z  
  
Chain information for run10_004.pdb #1  
---  
Chain | Description  
B | No description available  
R | No description available  
  

> set bgColor white

> select /B

370 atoms, 373 bonds, 22 residues, 1 model selected  

> color sel red

> save D:/Draft_03/C5a-C5aR1-Barrs1/Dock03/run10_004.cxs

> ui tool show H-Bonds

> hbonds intraMol false intraRes false reveal true

2 hydrogen bonds found  

> hbonds twoColors true intraMol false intraRes false reveal true

2 hydrogen bonds found  
0 strict hydrogen bonds found  

> hbonds intraMol false intraRes false reveal true

2 hydrogen bonds found  

> hbonds interModel false intraModel false saltOnly true intraMol false
> intraRes false reveal true

0 hydrogen bonds found  

> hbonds saltOnly true intraMol false intraRes false reveal true

0 hydrogen bonds found  

> hbonds intraMol false intraRes false reveal true

2 hydrogen bonds found  

> hbonds intraMol false intraRes false select true reveal true

2 hydrogen bonds found  

> hbonds intraMol false intraRes false reveal true

2 hydrogen bonds found  

> hbonds intraMol false intraRes false reveal true

2 hydrogen bonds found  
Restriction atom specifier must not be blank  

> hbonds sel restrict both intraMol false intraRes false reveal true

0 hydrogen bonds found  

> hbonds sel intraMol false intraRes false reveal true

2 hydrogen bonds found  

> hbonds sel restrict cross intraMol false intraRes false reveal true

2 hydrogen bonds found  

> hbonds sel restrict cross relax false intraMol false intraRes false reveal
> true

0 hydrogen bonds found  

> hbonds sel restrict cross intraMol false intraRes false reveal true

2 hydrogen bonds found  

> hbonds sel restrict cross intraMol false intraRes false reveal true

2 hydrogen bonds found  

> ui tool show Distances

Exactly two atoms must be selected!  

> ui tool show "Side View"

> select clear

> ui tool show "Show Sequence Viewer"

> sequence chain /R

Alignment identifier is 1/R  

> sequence chain /B

Alignment identifier is 1/B  

> select /B:60-61

30 atoms, 30 bonds, 2 residues, 1 model selected  

> select /B:60

10 atoms, 9 bonds, 1 residue, 1 model selected  

> sequence refseq "1/B :chain B"

Missing or invalid "refSeqInfo" argument: Expected [alignment-id:]sequence-
name-or-number or alignment-id  

> select /B:62

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select /B:62-72

176 atoms, 176 bonds, 11 residues, 1 model selected  

> select /B:72

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select /B:61-72

196 atoms, 197 bonds, 12 residues, 1 model selected  

> select /B:66

15 atoms, 14 bonds, 1 residue, 1 model selected  

> select /B:64-66

46 atoms, 45 bonds, 3 residues, 1 model selected  

> select /B:66-67

27 atoms, 26 bonds, 2 residues, 1 model selected  

> select /B:66-67

27 atoms, 26 bonds, 2 residues, 1 model selected  

> select /B:66-67

27 atoms, 26 bonds, 2 residues, 1 model selected  

> select /B:66-67

27 atoms, 26 bonds, 2 residues, 1 model selected  

> select /B:65

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select /B:65-66

39 atoms, 38 bonds, 2 residues, 1 model selected  

> select ::name="ASP"

192 atoms, 177 bonds, 16 residues, 1 model selected  

> select clear

> select /B:65-66

39 atoms, 38 bonds, 2 residues, 1 model selected  

> select clear

> select /B:66

15 atoms, 14 bonds, 1 residue, 1 model selected  

> select /B:65

24 atoms, 23 bonds, 1 residue, 1 model selected  

> select /B:66

15 atoms, 14 bonds, 1 residue, 1 model selected  

> select /B:67

12 atoms, 11 bonds, 1 residue, 1 model selected  

> show sel atoms

> hide sel atoms

> show sel target ab

> cartoon sel

> show (sel-residues & sidechain) target ab

> hide (sel-residues & (protein|nucleic)) target a

> cartoon hide sel-residues

> show (sel-residues & ((protein&@ca)|(nucleic&@p))) target ab

> undo

[Repeated 1 time(s)]

> show sel atoms

> select /B:70

16 atoms, 15 bonds, 1 residue, 1 model selected  

> show sel atoms

> select /B:67@CG

1 atom, 1 residue, 1 model selected  

> select /B:66

15 atoms, 14 bonds, 1 residue, 1 model selected  

> select /B:67@CB

1 atom, 1 residue, 1 model selected  

> select /R:225

19 atoms, 18 bonds, 1 residue, 1 model selected  

> select /B:67

12 atoms, 11 bonds, 1 residue, 1 model selected  

> select add /B:70@CA

13 atoms, 11 bonds, 2 residues, 1 model selected  

> color sel byhetero

> select /B:70@CA

1 atom, 1 residue, 1 model selected  

> select /B:70

16 atoms, 15 bonds, 1 residue, 1 model selected  

> color sel byhetero

> select clear

> ui tool show "Download DICOM"

> lighting full

[Repeated 1 time(s)]

> lighting soft

> lighting simple

> lighting soft

> lighting full

> lighting simple

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\dicom\ui\dicom_databases.py", line 407, in run  
self._fetch_collections()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\dicom\ui\dicom_databases.py", line 418, in
_fetch_collections  
entries = TCIADatabase.get_collections(self.session)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\dicom\dicom\databases\tcia.py", line 82, in get_collections  
collection_descs = nbia.getCollectionDescriptions()  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\tcia_utils\nbia.py",
line 255, in getCollectionDescriptions  
data = queryData(endpoint, options, api_url, format)  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\tcia_utils\nbia.py",
line 213, in queryData  
data = requests.get(url, params = options, headers = api_call_headers)  
NameError: name 'api_call_headers' is not defined  
  
NameError: name 'api_call_headers' is not defined  
  
File "C:\Program Files\ChimeraX\bin\lib\site-packages\tcia_utils\nbia.py",
line 213, in queryData  
data = requests.get(url, params = options, headers = api_call_headers)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 31.0.101.4146
OpenGL renderer: Intel(R) UHD Graphics 750
OpenGL vendor: Intel

Python: 3.9.11
Locale: en_IN.cp1252
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: windows

Manufacturer: Acer
Model: Veriton M200-H510
OS: Microsoft Windows 10 Pro (Build 19045)
Memory: 8,367,579,136
MaxProcessMemory: 137,438,953,344
CPU: 16 11th Gen Intel(R) Core(TM) i7-11700 @ 2.50GHz
OSLanguage: en-GB

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2023.5.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    comtypes: 1.1.14
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 23.1
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pywin32: 305
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    WMI: 1.5.1
    zipp: 3.15.0