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Opened 2 years ago
Closed 2 years ago
#9896 closed defect (can't reproduce)
glDrawBuffer: invalid operation
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | Greg Couch | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-5.15.0-84-generic-x86_64-with-glibc2.35
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
I started chimerax normally from the terminal and it took down my entire graphics set up. I couldn't recover the graphics by any mean so I restarted the computer. Upon restart, I was unable to boot normally and ran into issues with the gnu grub terminal. After messing around with forums for 2 hours, I seemed to solve something. Next, I updated the NVIDIA driver (according to the Chimerax Common Issues page) by going to my Additional Drivers tab of the Ubuntu updater. I am hoping this solves my issues as I have run into this problem previously.
Fatal Python error: Segmentation fault
Thread 0x00007f10e57fa640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f10e5ffb640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f10e67fc640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/selectors.py", line 416 in select
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/connection.py", line 936 in wait
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f10e6ffd640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f10e77fe640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f10e7fff640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f1104ff9640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f11057fa640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f1105ffb640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f11067fc640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f1106ffd640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f11077fe640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f1107fff640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f1124ff9640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f11257fa640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f1125ffb640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f11267fc640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f1126ffd640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f11277fe640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f1127fff640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/ssl.py", line 1099 in read
File "/usr/lib/ucsf-chimerax/lib/python3.9/ssl.py", line 1241 in recv_into
File "/usr/lib/ucsf-chimerax/lib/python3.9/socket.py", line 704 in readinto
File "/usr/lib/ucsf-chimerax/lib/python3.9/http/client.py", line 281 in _read_status
File "/usr/lib/ucsf-chimerax/lib/python3.9/http/client.py", line 320 in begin
File "/usr/lib/ucsf-chimerax/lib/python3.9/http/client.py", line 1377 in getresponse
File "/usr/lib/ucsf-chimerax/lib/python3.9/urllib/request.py", line 1350 in do_open
File "/usr/lib/ucsf-chimerax/lib/python3.9/urllib/request.py", line 1389 in https_open
File "/usr/lib/ucsf-chimerax/lib/python3.9/urllib/request.py", line 494 in _call_chain
File "/usr/lib/ucsf-chimerax/lib/python3.9/urllib/request.py", line 534 in _open
File "/usr/lib/ucsf-chimerax/lib/python3.9/urllib/request.py", line 517 in open
File "/usr/lib/ucsf-chimerax/lib/python3.9/urllib/request.py", line 214 in urlopen
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/toolshed/available.py", line 49 in load
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/toolshed/__init__.py", line 456 in reload_available
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Thread 0x00007f1144f3b640 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 316 in wait
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 574 in wait
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 1297 in run
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x00007f11b155eb80 (most recent call first):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/usr/lib/ucsf-chimerax/lib/python3.9/runpy.py", line 87 in _run_code
File "/usr/lib/ucsf-chimerax/lib/python3.9/runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/figure1-T-orientations.cxs format session
Opened 2ekm map 6 as #2, grid size 47,47,47, pixel 2, shown at level 0.114,
step 1, values float32
Opened 1otg map 6 as #6, grid size 46,46,46, pixel 2, shown at level 0.114,
step 1, values float32
Opened 1otg-3 map 6 as #13, grid size 46,46,46, pixel 2, shown at level 0.114,
step 1, values float32
Opened 1otg-2 map 6 as #14, grid size 46,46,46, pixel 2, shown at level 0.114,
step 1, values float32
Opened 1otg-4 map 6 as #15, grid size 46,46,46, pixel 2, shown at level 0.114,
step 1, values float32
Opened 2ekm-2 map 6 as #16, grid size 47,47,47, pixel 2, shown at level 0.114,
step 1, values float32
Opened 2ekm-3 map 6 as #17, grid size 47,47,47, pixel 2, shown at level 0.114,
step 1, values float32
Opened 2ekm-3 map 6 as #18, grid size 47,47,47, pixel 2, shown at level 0.114,
step 1, values float32
opened ChimeraX session
> hide #!5 models
> hide #!13 models
> show #!13 models
> hide #!13 models
> hide #!14 models
> show #!14 models
> hide #!15 models
> show #!15 models
> hide #!15 models
> hide #!16 models
> show #!16 models
> hide #!17 models
> hide #!18 models
> show #!18 models
> hide #!6 models
> view list
Named views: face-exterior, face-interior, neg1-0-1, off-1-1-1-body-diagonal,
side-bodydiagonal, z-orient
> view off-1-1-1-body-diagonal
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/TESTvolume-one-trimer-completely-decorated-off-body-diagonal-
> default-aspect-larger2.png width 1800 height 1136 supersample 4
> transparentBackground true
> graphics silhouettes true
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-one-trimer-completely-decorated-off-body-diagonal-default-
> aspect-larger2.png width 1800 height 1136 supersample 4
> transparentBackground true
> show #!6 models
> hide #!14 models
> hide #!16 models
> hide #!18 models
> hide #!2 models
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette-trimer1-off-body-diagonal-default-aspect-
> larger.png width 1800 height 1136 supersample 4 transparentBackground true
> show #!2 models
> hide #!6 models
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette-trimer2-off-body-diagonal-default-aspect-
> larger.png width 1800 height 1136 supersample 4 transparentBackground true
> show #!6 models
> show #!13 models
> show #!14 models
> show #!15 models
> show #!16 models
> show #!17 models
> show #!18 models
> hide #!6 models
> show #!6 models
> hide #!6 models
> show #!6 models
> hide #!13 models
> show #!13 models
> hide #!14 models
> hide #!15 models
> hide #!16 models
> hide #!17 models
> show #!17 models
> hide #!18 models
> show #!16 models
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-one-trimer-completely-decorated-TOP_off-body-
> diagonal_1800x1136.png width 1800 height 1136 supersample 4
> transparentBackground true
> show #!15 models
> show #!14 models
> hide #!15 models
> hide #!16 models
> hide #!17 models
> hide #!14 models
> hide #!13 models
> show #8 models
> hide #8 models
> hide #!6 models
> hide #!2 models
> hide #!1 models
> show #12 models
> show #11 models
> hide #11 models
> hide #12 models
> show #!6 models
> show #4 models
> hide #!6 models
> show #!6 models
> show #3 models
> hide #4 models
> hide #3 models
> open
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/figure1-T-orientations1.cxs format session
Opened 2ekm map 6 as #2, grid size 47,47,47, pixel 2, shown at level 0.114,
step 1, values float32
Opened 1otg map 6 as #6, grid size 46,46,46, pixel 2, shown at level 0.114,
step 1, values float32
Opened 1otg-3 map 6 as #13, grid size 46,46,46, pixel 2, shown at level 0.114,
step 1, values float32
Opened 1otg-2 map 6 as #14, grid size 46,46,46, pixel 2, shown at level 0.114,
step 1, values float32
Opened 1otg-4 map 6 as #15, grid size 46,46,46, pixel 2, shown at level 0.114,
step 1, values float32
Opened 2ekm-2 map 6 as #16, grid size 47,47,47, pixel 2, shown at level 0.114,
step 1, values float32
Opened 2ekm-3 map 6 as #17, grid size 47,47,47, pixel 2, shown at level 0.114,
step 1, values float32
Opened 2ekm-3 map 6 as #18, grid size 47,47,47, pixel 2, shown at level 0.114,
step 1, values float32
opened ChimeraX session
> open
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/figure1-T-orientations.cxs
Opened 2ekm map 6 as #2, grid size 47,47,47, pixel 2, shown at level 0.114,
step 1, values float32
Opened 1otg map 6 as #6, grid size 46,46,46, pixel 2, shown at level 0.114,
step 1, values float32
Opened 1otg-3 map 6 as #13, grid size 46,46,46, pixel 2, shown at level 0.114,
step 1, values float32
Opened 1otg-2 map 6 as #14, grid size 46,46,46, pixel 2, shown at level 0.114,
step 1, values float32
Opened 1otg-4 map 6 as #15, grid size 46,46,46, pixel 2, shown at level 0.114,
step 1, values float32
Opened 2ekm-2 map 6 as #16, grid size 47,47,47, pixel 2, shown at level 0.114,
step 1, values float32
Opened 2ekm-3 map 6 as #17, grid size 47,47,47, pixel 2, shown at level 0.114,
step 1, values float32
Opened 2ekm-3 map 6 as #18, grid size 47,47,47, pixel 2, shown at level 0.114,
step 1, values float32
opened ChimeraX session
> show #4 models
> hide #4 models
> undo
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> graphics silhouettes true
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette-assembly-off-body-diagonal_1800x1136.png width
> 1800 height 1136 supersample 4 transparentBackground true
> label delete #5:10
> label #5:10 text 2-fold height 16
> label #5:10 text "2-fold (0,0,1)" height 16
> label #5:10 text "2-fold (0,0,1) " height 16
> label #5:3 text "3-fold (1,1,1) " height 16
> label #5:9 text "3-fold (1,-1,1) " height 16
> label #5:9 text "3-fold (1,-1,1) " height 16 offset 0,-20,0.5
> label #5:9 text "3-fold (1,-1,1) " height 16 offset -20,0,0.5
> label #5:9 text "3-fold (1,-1,1) " height 16 offset -30,0,0.5
> label #5:9 text "3-fold\n(1,-1,1) " height 16 offset -30,0,0.5
> label #5:9 text "3-fold\r(1,-1,1) " height 16 offset -30,0,0.5
> label #5:9 text "3-fold (1,-1,1) " height 16 offset -30,0,0.5
> label #5:3 text "3-fold (1,1,1) " height 16 offset -30,0,0.5
> label #5:10 text "2-fold (0,0,1) " height 16 offset -30,0,5
> label #5:10 text "2-fold (0,0,1) " height 16 offset -30,0,50
> label #5:10 text "2-fold (0,0,1) " height 16 offset -30,0,30
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette-assembly-Large-Font-off-body-
> diagonal_1800x1136.png width 1800 height 1136 supersample 4
> transparentBackground true
> label #5:3 text "3-fold (1,1,1) " height 14 offset -30,0,0.5
> label #5:9 text "3-fold (1,-1,1) " height 15 offset -30,0,0.5
> label #5:3 text "3-fold (1,1,1) " height 14 offset -20,0,0.5
> label #5:9 text "3-fold (1,-1,1) " height 15 offset -40,0,0.5
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette-assembly-Large-Font-off-body-
> diagonal_1800x1136.png width 1800 height 1136 supersample 4
> transparentBackground true
> label delete #5:9
> label delete #5:10
> label delete #5:3
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette-assembly-no-font-off-body-diagonal_1800x1136.png
> width 1800 height 1136 supersample 4 transparentBackground true
> hide #!6 models
> show #!6 models
> hide #5 models
> hide #!2 models
> hide #!1 models
> hide #!13 models
> hide #!14 models
> hide #!15 models
> hide #!16 models
> hide #!17 models
> hide #!18 models
> hide #!6 models
> split #4
Split 1otg (#4) into 3 models
Chain information for 1otg A #4.1
---
Chain | Description
A | No description available
Chain information for 1otg I #4.2
---
Chain | Description
I | No description available
Chain information for 1otg Q #4.3
---
Chain | Description
Q | No description available
> hide #4.1 models
> show #4.1 models
> molmap #4.1 6
Opened 1otg A map 6 as #19, grid size 35,37,44, pixel 2, shown at level
0.0838, step 1, values float32
> molmap #4.2 6
Opened 1otg I map 6 as #20, grid size 37,44,35, pixel 2, shown at level
0.0838, step 1, values float32
> molmap #4.3 6
Opened 1otg Q map 6 as #21, grid size 44,35,37, pixel 2, shown at level
0.0838, step 1, values float32
Color zone shortcut requires 1 displayed atomic model and 1 map, got 3 atomic
models, 3 maps.
> color #19 chartreuse
> color #20 chartreuse
> color #21 chartreuse
> hide #!21 models
> show #!21 models
> hide #4.3 models
> hide #4.2 models
> hide #4.1 models
> hide #!4 models
> show #!4 models
> show #4.1 models
> show #4.2 models
> show #4.3 models
> hide #!4 models
> marker #22 position 55,55,55 color red radius 1
> marker #22 position 0,0,0 color red radius 0.25
> marker line #22:1 #22:2 color red radius 0.25
Missing or invalid "markerSet" argument: Expected a marker set or a model id
> marker link #22:1 #22:2 color red radius 0.25
> hide #!20 models
> show #!20 models
> hide #!21 models
> show #!21 models
> volume #20-21 transparency 0.4
> volume #20-21 transparency 0
> hide #!19 models
> show #!19 models
> hide #!20 models
> show #!20 models
> volume #21 transparency 04
> volume #21 transparency 0.4
> volume #19 transparency 0.4
> volume #19 transparency 0.3
> volume #21 transparency 0.3
> volume #!19-21 style surface
> lighting shadows true intensity 0.5
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> volume #21 transparency 0
> volume #21 transparency 0.2
> volume #19 transparency 0
> volume #19 transparency 0.05
> volume #19 transparency 0
> hide #20.1 models
> show #20.1 models
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette-trimer1-no-text-off-body-diagonal_1800x1136.png
> width 1800 height 1136 supersample 4 transparentBackground true
> hide #!20 models
> show #!20 models
> hide #20.1 models
> show #20.1 models
> hide #20.1 models
> show #20.1 models
> hide #!20 models
> show #!20 models
> hide #!19 models
> hide #!21 models
> lighting soft
> lighting shadows true intensity 0.5
> lighting soft
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette-monomer1-off-body-diagonal_1800x1136.png width
> 1800 height 1136 supersample 4 transparentBackground true
> hide #22 models
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette-monomer1-off-body-diagonal_1800x1136.png width
> 1800 height 1136 supersample 4 transparentBackground true
> show #!21 models
> show #!19 models
> hide #!21 models
> show #!21 models
> volume #21 transparency 0
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette_trimer1-separate-chains_off-body-
> diagonal_1800x1136.png width 1800 height 1136 supersample 4
> transparentBackground true
> show #22 models
> hide #22 models
> show #22 models
> hide #22 models
> show #22 models
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette_trimer1-separate-chains-axis_off-body-
> diagonal_1800x1136.png width 1800 height 1136 supersample 4
> transparentBackground true
> hide #!21 models
> hide #!20 models
> hide #!19 models
> show #!4 models
> hide #!4 models
> show #3 models
> split #3
Split 2ekm (#3) into 3 models
Chain information for 2ekm B #3.1
---
Chain | Description
B | No description available
Chain information for 2ekm N #3.2
---
Chain | Description
N | No description available
Chain information for 2ekm T #3.3
---
Chain | Description
T | No description available
> molmap #3.1-3.3
Missing or invalid "resolution" argument: Expected a number
> molmap #3.1-3.3 6
No atoms specified
> molmap #3.1 6
Opened 2ekm B map 6 as #23, grid size 46,38,38, pixel 2, shown at level
0.0838, step 1, values float32
> molmap #3.2 6
Opened 2ekm N map 6 as #24, grid size 38,38,46, pixel 2, shown at level
0.0823, step 1, values float32
> molmap #3.3 6
Opened 2ekm T map 6 as #25, grid size 38,46,38, pixel 2, shown at level
0.0845, step 1, values float32
> color #23 medium slate blue
> color #24 medium slate blue
> color #25 medium slate blue
> hide #22 models
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette_trimer2-separate-chains_off-body-
> diagonal_1800x1136.png width 1800 height 1136 supersample 4
> transparentBackground true
> show #!19 models
> show #!20 models
> show #!21 models
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette_two-trimer-separated-chains_off-body-
> diagonal_1800x1136.png width 1800 height 1136 supersample 4
> transparentBackground true
> show #!18 models
> hide #!18 models
> show #!17 models
> show #!16 models
> show #!14 models
> hide #!14 models
> show #!13 models
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette_one-trimer-completely-decorated-separated-chains-
> TOP_off-body-diagonal_1800x1136.png width 1800 height 1136 supersample 4
> transparentBackground true
> show #!14 models
> show #!15 models
> show #!18 models
> show #5 models
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette_assembly-main-trimer-separated-chains_off-body-
> diagonal_1800x1136.png width 1800 height 1136 supersample 4
> transparentBackground true
> marker #5 0,55,0 color black radius 1
Expected a keyword
> marker #5 position 0,55,0 color black radius 1
> marker #5 position 55,0,0 color black radius 1
> marker link #5:12 #5:1 color black radius 0.25
> marker link #5:11 #5:1 color black radius 0.25
> marker link #5:5 #5:1 color red radius 0.25
> marker link #5:7 #5:1 color red radius 0.25
> marker link #5:8 #5:1 color red radius 0.25
> marker link #5:6 #5:1 color blue radius 0.25
> marker link #5:4 #5:1 color blue radius 0.25
> marker #5 position 0,0,-55 color black radius 1
> marker #5 position 0,-55,0 color black radius 1
> marker link #5:14 #5:1 color black radius 0.25
> marker link #5:13 #5:1 color black radius 0.25
> marker #5 position -55,0,0 color black radius 1
> marker link #5:15 #5:1 color black radius 0.25
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette_assembly-main-trimer-separated-chains-ALL-
> axis_off-body-diagonal_1800x1136.png width 1800 height 1136 supersample 4
> transparentBackground true
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/figure1-T-orientations-Oct-markers.cxs includeMaps true
> ui mousemode right "delete markers"
> marker delete #5:7,4 linksOnly true
> marker delete #5:7,9 linksOnly true
> marker delete #5:3,9 linksOnly true
> marker delete #5:5,9 linksOnly true
> marker delete #5:5,6 linksOnly true
> marker delete #5:5,2 linksOnly true
> marker delete #5:8,6 linksOnly true
> marker delete #5:8,2 linksOnly true
> marker delete #5:8,4 linksOnly true
> marker delete #5:3,4 linksOnly true
> marker delete #5:3,6 linksOnly true
> marker delete #5:7,2 linksOnly true
> ui mousemode right "link markers"
> marker link #5:3 #5:7 color red radius 0.1
> marker link #5:3 #5:5 color red radius 0.1
> marker link #5:7 #5:5 color red radius 0.1
> marker link #5:7 #5:8 color red radius 0.1
> marker link #5:5 #5:8 color red radius 0.1
> marker link #5:3 #5:8 color red radius 0.1
> marker link #5:2 #5:4 color red radius 0.1
> marker link #5:2 #5:4 color blue radius 0.1
marker link already exists between #5:2,4
> ui mousemode right "delete markers"
> marker delete #5:2,4 linksOnly true
> marker link #5:2 #5:4 color blue radius 0.1
> marker link #5:2 #5:6 color blue radius 0.1
> marker link #5:2 #5:9 color blue radius 0.1
> marker link #5:6 #5:9 color blue radius 0.1
> marker link #5:4 #5:9 color blue radius 0.1
> marker link #5:4 #5:6 color blue radius 0.1
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/figure1-T-orientations-Tet-markers.cxs
> save
> /home/kylemeador/designs/T33-round2/23-04-12-220525_FilteredRefinedAfterDesignFinalSet_SelectedSequences/chimera-
> sessions/volume-silhouette_assembly-main-trimer-separated-chains-All-Tet-
> axis_off-body-diagonal_1800x1136.png width 1800 height 1136 supersample 4
> transparentBackground true
An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.
GLError(
err = 1282,
description = b'invalid operation',
baseOperation = glDrawBuffer,
cArguments = (GL_BACK,)
)
Traceback (most recent call last):
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/updateloop.py", line 73, in draw_new_frame
view.draw(check_for_changes = False)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 177, in draw
self._draw_scene(camera, drawings)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 261, in _draw_scene
draw_highlight_outline(r, highlight_drawings, color = self._highlight_color,
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1613, in draw_highlight_outline
r.outline.finish_rendering_outline(color=color, pixel_width=pixel_width)
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1885, in finish_rendering_outline
r.pop_framebuffer()
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 722, in pop_framebuffer
fb.activate()
File "/usr/lib/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2271, in activate
GL.glDrawBuffer(self._draw_buffer)
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError
OpenGL.error.GLError: GLError(
err = 1282,
description = b'invalid operation',
baseOperation = glDrawBuffer,
cArguments = (GL_BACK,)
)
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 NVIDIA 525.125.06
OpenGL renderer: NVIDIA GeForce GTX 1060 6GB/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: xcb
XDG_SESSION_TYPE=x11
DESKTOP_SESSION=ubuntu
XDG_SESSION_DESKTOP=ubuntu
XDG_CURRENT_DESKTOP=ubuntu:GNOME
DISPLAY=:1
Manufacturer: System manufacturer
Model: System Product Name
OS: Ubuntu 22.04 Jammy Jellyfish
Architecture: 64bit ELF
Virtual Machine: none
CPU: 16 AMD Ryzen 7 3800X 8-Core Processor
Cache Size: 512 KB
Memory:
total used free shared buff/cache available
Mem: 31Gi 3.1Gi 25Gi 175Mi 2.5Gi 27Gi
Swap: 975Mi 0B 975Mi
Graphics:
09:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP106 [GeForce GTX 1060 6GB] [10de:1c03] (rev a1)
Subsystem: Gigabyte Technology Co., Ltd GP106 [GeForce GTX 1060 6GB] [1458:371a]
Kernel driver in use: nvidia
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2023.5.7
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-LinuxSupport: 1.0.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
distro: 1.7.0
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 23.1
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Graphics |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → glDrawBuffer: invalid operation |
comment:2 by , 2 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | assigned → closed |
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"I started chimerax normally from the terminal and it took down my entire graphics set up. I couldn't recover the graphics by any mean so I restarted the computer. Upon restart, I was unable to boot normally and ran into issues with the gnu grub terminal. After messing around with forums for 2 hours, I seemed to solve something. Next, I updated the NVIDIA driver (according to the Chimerax Common Issues page) by going to my Additional Drivers tab of the Ubuntu updater. I am hoping this solves my issues as I have run into this problem previously."
They saved a session then saved an image after many other steps and then got an OpenGL error followed by a crash. Seems likely to be a graphics driver issue. Have seem the opengl error traceback before many times but only on Linux.