wiki:phenix-9-27-23

Version 3 (modified by pett, 2 years ago) ( diff )

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Phenix

Fit Loops Improvements

  • Use JSON output
  • Reworked command to use atom spec instead of chain ID and start/end residue numbers
    • Warn if spec selects nothing
  • Reported (additional) fit-loops bugs:
    • JSON option not working
    • JSON output includes null results
    • Chain ID w/o start/end res numbers does whole structure
    • Python IndexError into solution list
    • Phenix's Python 3.10 build basically doesn't work
      • Same problem as ChimeraX had: automatic type conversion to C/C++ disabled
  • Preliminary results-viewer tool

ChimeraX completed

  • Region Browser
  • Combine sessions
  • Actions→View → Actions→Focus
  • Fixed bug with proportional spacing of vertical colors in Color Key
  • Automatically open ViewDockX tool for appropriate formats (showTool keyword)
  • Fixed problem where Help Viewer was starting with zero height
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