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Opened 2 years ago
Closed 2 years ago
#9852 closed defect (can't reproduce)
Crash using File→Open on Windows and/or in return statement
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Platform | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.22621
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: code 0x8001010e
Thread 0x00004ae4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ae4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ae4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ae4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 135 in show_open_file_dialog
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\open_command\dialog.py", line 107 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
File "C:\Program Files\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: code 0x8001010e
Thread 0x00004ae4 (most recent call first):
File "C:\Program Files\ChimeraX 1.3\bin\lib\site-packages\chimerax\atomic\molc.py", line 36 in c_function
Windows fatal exception: access violation
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
Windows fatal exception: code 0x8001010e
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open C:/Users/rnwok/Documents/Tomo-
> Processing/20230419-CP01_TEM4/Lam_10/corrected_tomos-v6/crop/segmentations/Lam_102_ccRedo_corrected_crop_preproc__actin-
> positive_seg.hdf
Opened Lam_102_ccRedo_corrected_crop_preproc__actin-positive_seg.hdf as #1,
grid size 440,440,288, pixel 8.8, shown at level 0.479, step 2, values float32
> open C:/Users/rnwok/Documents/Tomo-
> Processing/20230419-CP01_TEM4/Lam_10/corrected_tomos-v6/crop/segmentations/Lam_102_ccRedo_corrected_crop_preproc__mt-
> positive_seg.hdf
Opened Lam_102_ccRedo_corrected_crop_preproc__mt-positive_seg.hdf as #2, grid
size 440,440,288, pixel 8.8, shown at level 0.197, step 2, values float32
> open C:/Users/rnwok/Documents/Tomo-
> Processing/20230419-CP01_TEM4/Lam_10/corrected_tomos-v6/crop/segmentations/Lam_102_ccRedo_corrected_crop_preproc__ribo-
> positive_seg.hdf
Opened Lam_102_ccRedo_corrected_crop_preproc__ribo-positive_seg.hdf as #3,
grid size 440,440,288, pixel 8.8, shown at level 1.84, step 2, values float32
> volume #1 step 1
> volume #1 style image
> volume #1 style surface
> volume #1 change image level 0,0 level 0.4644,0.8 level 2.38,1
> volume #1 level 0.3038
> volume #3 level 0.1362
> volume #3 level 0.01139
> ui tool show "Hide Dust"
> volume #2 level 0.05035
> surface dust #2 size 62.76
> surface dust #2 size 192.57
> volume #3 step 1
> volume #2 step 1
> volume #2 level 0.03839
> volume #2 level 0.006507
> volume #2 level 0.03042
> volume #2 level 0.07028
> surface dust #2 size 3345.7
> surface dust #2 size 3352.6
> surface dust #2 size 3366.5
> surface dust #2 size 4088.8 metric volume
> surface dust #2 size 61919 metric volume
> surface dust #2 size 60914 metric volume
> surface dust #2 size 59925 metric volume
> surface dust #2 size 58951 metric volume
> surface dust #2 size 6.7888e+07 metric volume
> surface dust #2 size 1000 metric "size rank"
> surface dust #2 size 6 metric "size rank"
> surface dust #2 size 2 metric "size rank"
> surface dust #2 size 3 metric "size rank"
> surface dust #2 size 6 metric "size rank"
> surface dust #3 size 3 metric "size rank"
> surface dust #3 size 971 metric "size rank"
> volume #3 level 0.04708
> volume #3 level 0.02354
> volume #3 level 0.01
> surface dust #3 size 4088.8 metric volume
> surface dust #3 size 3.8182e+05 metric volume
> ui tool show "Map Eraser"
> volume erase #3 center 1907.9,1731.8,1247.2 radius 2019.3 outside true
Opened Lam_102_ccRedo_corrected_crop_preproc__ribo-positive_seg.hdf copy as
#5, grid size 440,440,288, pixel 8.8, shown at step 1, values float32
> volume erase #5 center 4194.4,1750.4,1312.7 radius 1231.3
> volume erase #5 center -128.6,1906.5,1460.1 radius 363.97
> volume erase #5 center -250.56,1673.6,473.39 radius 596.29
> volume erase #5 center -214.83,1061.8,1069.4 radius 596.29
> volume erase #5 center -193.58,2346.4,1828.1 radius 596.29
> volume erase #5 center -169.24,1843.8,2052.3 radius 596.29
> volume erase #5 center -319.65,1319.6,1897.4 radius 596.29
> volume erase #5 center -273.9,895.05,1625.1 radius 596.29
> volume erase #5 center -324.16,772.62,1319 radius 596.29
> volume erase #5 center -287.7,1072,491.87 radius 596.29
> volume erase #5 center -374.25,2202.6,901.04 radius 596.29
> volume erase #5 center -248.02,2707.1,1354 radius 596.29
> volume erase #5 center -233.82,2654,1042.7 radius 596.29
> volume erase #5 center -273.68,2251.1,490.92 radius 596.29
> volume erase #5 center -277.67,1685.3,1028.2 radius 596.29
> volume erase #5 center -283.03,1486.4,1346.5 radius 596.29
> volume erase #5 center -300.4,2060.1,1165.2 radius 596.29
> volume erase #5 center 1675.5,3918.5,967.72 radius 336.86
> volume erase #5 center 1646.3,3839,1303.1 radius 336.86
> volume erase #5 center 1961.9,3733,878.1 radius 336.86
> volume erase #5 center 2249.1,3739.4,960.13 radius 336.86
> volume erase #5 center 1904.8,3827.1,1529.5 radius 336.86
> volume erase #5 center 1548.1,132.7,1771 radius 336.86
> volume erase #5 center 1669.9,242.51,2123.6 radius 336.86
> surface dust #3 size 7601.6 metric volume
> surface dust #3 size 9.8535e+05 metric volume
> surface dust #3 size 1.1909e+07 metric volume
> surface dust #3 size 3.4044e+09 metric volume
> surface dust #3 size 69667 metric volume
> surface dust #5 size 15496 metric volume
> surface dust #5 size 61919 metric volume
> volume #5 level 0.005
Can only have one displayed volume when erasing
> volume erase #2 center 2619.9,1820.1,1416.7 radius 1928.3 outside true
Opened Lam_102_ccRedo_corrected_crop_preproc__mt-positive_seg.hdf copy as #6,
grid size 440,440,288, pixel 8.8, shown at step 1, values float32
> volume erase #2 center 2619.9,1820.1,1416.7 radius 1928.3 outside true
Opened Lam_102_ccRedo_corrected_crop_preproc__mt-positive_seg.hdf copy as #7,
grid size 440,440,288, pixel 8.8, shown at step 1, values float32
> close #6
> surface dust #2 size 3 metric "size rank"
> surface dust #2 size 10 metric "size rank"
> surface dust #7 size 7 metric "size rank"
> surface dust #7 size 9
> surface dust #7 size 52.8
> surface dust #7 size 305.06
> surface dust #7 size 434.19
> surface dust #7 size 681.47 metric volume
> surface dust #7 size 4088.8 metric volume
> surface dust #7 size 66982 metric volume
> surface dust #7 size 3.132e+05 metric volume
> surface dust #7 size 464.64 metric area
> surface dust #7 size 63528 metric area
> surface dust #7 size 1.9466e+06 metric area
> surface dust #7 size 1000 metric "area rank"
> surface dust #7 size 6 metric "area rank"
> surface dust #7 size 1 metric "area rank"
> volume #1 level 0.04373
> surface dust #1 size 82.73
> surface dust #1 size 253.85
> surface dust #1 size 498.52
> surface dust #1 size 5063.9
> surface dust #1 size 4084.9
> surface dust #1 size 4076.5
> surface dust #1 size 4059.6
> surface dust #1 size 4051.2
> surface dust #1 size 4042.8
> surface dust #1 size 4017.8
> surface dust #1 size 3992.8
> surface dust #1 size 3984.6
> surface dust #1 size 3959.9
> surface dust #1 size 3932.6
> surface dust #1 size 3924.5
> surface dust #1 size 3897.5
> surface dust #1 size 3870.6
> surface dust #1 size 3862.6
> surface dust #1 size 3836
> surface dust #1 size 3809.6
> surface dust #1 size 1000 metric "size rank"
> surface dust #1 size 6 metric "size rank"
> surface dust #1 size 2 metric "size rank"
> surface dust #1 size 3 metric "size rank"
> surface dust #1 size 1 metric "size rank"
> volume #1 step 4
> volume #1 step 16
> volume #1 step 8
> volume #1 step 2
> volume #1 level 0.1202
> close #1
> open C:/Users/rnwok/Documents/Tomo-
> Processing/20230419-CP01_TEM4/Lam_10/corrected_tomos-v6/crop/segmentations/Lam_102_ccRedo_corrected_crop_preproc__actin-
> positive_seg.hdf
Opened Lam_102_ccRedo_corrected_crop_preproc__actin-positive_seg.hdf as #1,
grid size 440,440,288, pixel 8.8, shown at level 0.304, step 2, values float32
> volume #1 level 0.1617
> volume #1 step 1
> volume #1 level 0.1328
> volume #1 level 0.0401
> volume #1 level 0.01694
> surface dust #1 size 73.21
> surface dust #1 size 710.04
> volume #1 level 0.008256
> volume #1 step 8
> volume #1 step 2
> surface dust #1 size 4088.8 metric volume
> surface dust #1 size 1.8095e+09 metric volume
> volume erase #1 center 2009,2082.5,1448.7 radius 1852.8 outside true
Opened Lam_102_ccRedo_corrected_crop_preproc__actin-positive_seg.hdf copy as
#6, grid size 440,440,288, pixel 8.8, shown at step 1, values float32
> surface dust #6 size 18164 metric volume
> surface dust #6 size 1.2387e+07 metric volume
> volume erase #6 center 2070.4,2190.8,-1025.5 radius 1816
> volume erase #6 center 4986.7,1940.4,1074.2 radius 1816
> volume erase #6 center 1953.2,2019.1,3849.5 radius 1816
> volume erase #6 center 2690.8,3144.4,3273.3 radius 1060.9
> volume erase #6 center 1698.1,3133.5,3151.2 radius 1060.9
> volume erase #6 center 798.51,2510.9,3254 radius 1060.9
> volume erase #6 center 807.57,1434.2,3320.6 radius 1060.9
> volume erase #6 center 1724.7,1117.3,3141.9 radius 1060.9
> volume erase #6 center 2882.1,1166.6,3048.7 radius 1060.9
> volume erase #6 center 3412.8,1912.1,2763.2 radius 1060.9
> volume erase #6 center 2909.5,1004,-111.45 radius 1060.9
> volume #6 level 0.01984
> volume erase #6 center 557.33,1763,1652.1 radius 1060.9
> volume erase #6 center 1053.9,3231,1350.8 radius 1060.9
> volume #6 level 0.01405
> volume #6 level 0.005
> volume #6 level 0.015
> volume #6 level 0.01
> volume #6 level 0.0125
> volume #6 level 0.008686
> surface dust #6 size 2.9598e+07 metric volume
> close #1
> close #3
> close #2
> open C:/Users/rnwok/Documents/Tomo-
> Processing/20230419-CP01_TEM4/Lam_10/corrected_tomos-v6/crop/Lam_102_ccRedo_corrected_crop-
> segment.mrc
Opened Lam_102_ccRedo_corrected_crop-segment.mrc as #1, grid size 420,422,266,
pixel 8.8,8.8,8.8, shown at level 1, step 2, values int8
> volume #1
> volume #1 level 0.5667
> volume #1 level 0.2574
> volume #1 step 1
> surface dust #1 size 4088.8 metric volume
> surface dust #1 size 6.1388e+05 metric volume
> surface dust #1 size 6.0391e+05 metric volume
> surface dust #1 size 5.941e+05 metric volume
> surface dust #1 size 2.7082e+08 metric volume
> surface dust #1 size 1.384e+08 metric volume
> surface dust #1 size 1000 metric "size rank"
> surface dust #1 size 6 metric "size rank"
> surface dust #1 size 8 metric "size rank"
> ui tool show "Map Eraser"
> volume erase #1 center 2215,1786.2,593.64 radius 406.35
Opened Lam_102_ccRedo_corrected_crop-segment.mrc copy as #3, grid size
420,422,266, pixel 8.8,8.8,8.8, shown at step 1, values int8
> surface dust #1 size 6 metric "size rank"
> surface dust #3 size 3 metric "size rank"
> surface dust #3 size 8 metric "size rank"
> volume erase #3 center 2232.2,2166.6,943.84 radius 404.78
> volume erase #3 center 2538.9,3327.2,766.08 radius 404.78
> volume erase #3 center 2582.4,3512.6,1675 radius 404.78
> volume erase #3 center 2609.4,3047.3,1964.8 radius 404.78
> volume erase #3 center 2488.6,2376.6,2034.5 radius 404.78
> volume erase #3 center 2392.4,1684.4,2045.6 radius 404.78
> volume erase #3 center 2349.3,2529.2,503.12 radius 404.78
> volume erase #3 center 2135.9,1228.2,720.21 radius 404.78
> volume erase #3 center 2089,936.69,1631 radius 404.78
> volume erase #3 center 2223.8,1466.3,1128.9 radius 404.78
> volume erase #3 center 2235.1,717.06,2138.1 radius 321.23
> volume erase #3 center 1884.4,306.94,1645.4 radius 321.23
> volume erase #3 center 1874,337.48,1459.9 radius 321.23
> volume erase #3 center 2068.3,309.89,1433 radius 321.23
> volume erase #3 center 2355.2,2835.4,1632.2 radius 321.23
> volume erase #3 center 2411.1,3251,1542.6 radius 321.23
> volume erase #3 center 2439.3,3456.8,1327.1 radius 321.23
> volume erase #3 center 2441.1,3318.9,478.85 radius 321.23
> volume erase #3 center 2351.1,3009.7,1736.8 radius 321.23
> volume erase #3 center 2300,2643,1277.6 radius 321.23
> volume erase #3 center 2334.3,1814.4,903.02 radius 321.23
> close #1
> volume #3 step 2
> volume #3 step 1
> volume #3 level 0.1
> volume #3 level 0.001
> volume #3 level 1
> ui tool show "Map Eraser"
Can only have one displayed volume when erasing
> volume erase #5 center 3396.6,877.06,355.59 radius 574.99
> volume erase #5 center 3172.2,6.5555,1071 radius 574.99
> volume erase #5 center 3116.8,327.98,1690.8 radius 640.82
> volume erase #5 center 3321.4,2379.8,2802 radius 640.82
> save C:/Users/rnwok/Documents/Tomo-Processing/Chimera-
> models/04192023-Lam_102-ccRedo-crop.cxs
> open C:/Users/rnwok/Documents/Tomo-
> Processing/20230419-CP01_TEM4/Lam_10/corrected_tomos-v6/crop/Lam_102_ccRedo_corrected_crop.mrc
Opened Lam_102_ccRedo_corrected_crop.mrc as #1, grid size 420,422,266, pixel
8.8, shown at level 0.164, step 2, values float32
> volume #1 style image region 0,0,132,419,421,132 step 1 showOutlineBox true
> select #1
3 models selected
> volume #5 region 0,0,0,439,439,287
> volume #1 level -0.8308,0 level 0.1498,0.8 level 0.8438,1
> volume #1 level -0.8308,0 level -0.3871,0.9385 level 0.8438,1
> volume #1 level -0.8308,0 level -0.3871,0.9385 level 0.382,0.7692
> volume #1 level -0.8308,0 level -0.3871,0.9385 level 0.3012,0.6
> volume #1 level -0.8308,0 level -0.3582,0.9385 level 0.3012,0.6
> volume #1 level -0.8308,0 level -0.5199,0.6308 level 0.3012,0.6
> volume #1 level -1.887,0 level -0.5199,0.6308 level 0.3012,0.6
> volume #1 level -1.887,0 level 0.1729,0.9692 level 0.3012,0.6
> volume #1 level -1.887,0 level 0.1729,0.9692 level 0.2665,0.9692
> volume #1 level -1.887,0 level 0.144,0.8462 level 0.2665,0.9692
> volume #1 level -1.887,0 level 0.144,0.8462 level 0.203,0.9692
> volume #1 level -1.887,0 level 0.144,0.8462 level 0.1337,0.9538
> volume #1 region 0,0,0,419,421,265 step 2
> volume #1 region 0,0,0,419,421,265 step 2 maximumIntensityProjection true
> volume #1 maximumIntensityProjection false
> volume #1 style surface
> volume #1 style image region 0,0,132,419,421,132 step 1
> volume #1 region 0,0,172,419,421,172
> volume #1 region 0,0,154,419,421,154
> volume #1 region 0,0,0,419,421,265 step 2
> volume #1 style surface region 0,0,0,419,421,265 step 2
> vop scale #1 shift -1 factor -1
Opened Lam_102_ccRedo_corrected_crop.mrc scaled as #2, grid size 420,422,266,
pixel 8.8, shown at step 1, values float32
> select #1
3 models selected
> ~select #1
Nothing selected
> volume #2 level 1.938
> volume #2 level 1.813
> vop gaussian #2 sd 15
Opened Lam_102_ccRedo_corrected_crop.mrc scaled gaussian as #4, grid size
420,422,266, pixel 8.8, shown at step 1, values float32
> volume #4 level 1.635
> lighting soft
> volume #4 style image region 0,0,132,419,421,132 step 1
> volume #4 color #b2b2b2 color #b3ffff color #b3ffff
> volume #4 level 1.305,0 level 1.588,0.6308 level 1.884,1
> color #4.1 #b2b2b2 transparency 0
> color #4.2 #b2b2b2 models transparency 0
> volume #4 level 0.692,0.01538 level 1.588,0.6308 level 1.884,1
> volume #4 level 0.692,0.01538 level 1.81,0.9385 level 1.884,1
> volume #4 level 0.692,0.01538 level 1.81,0.9385 level 1.85,0.6615
> volume #4 level 0.692,0.01538 level 1.547,0.5846 level 1.85,0.6615
> set bgColor white
> set bgColor black
> lighting simple
> lighting full
> lighting soft
> volume #4 level 0.692,0.01538 level 1.547,0.5846 level 1.783,0.6615
> volume #4 level 0.692,0.01538 level 1.587,0.8615 level 1.783,0.6615
> volume #4 level 0.692,0.01538 level 1.587,0.8615 level 1.746,1
> volume #4 level 0.692,0.01538 level 1.35,0.4769 level 1.746,1
> select #4.2
1 model selected
> volume #4 region 0,0,158,419,421,158
> ui tool show "Fit to Segments"
Density map not found or not selected
> volume #!3-4 step 1
> volume #!3-4 region all imageMode "full region"
> volume unzone #!3-4
> mousemode rightMode "crop volume"
> volume #4 region 0,0,0,419,259,265
> volume #4 region 0,0,0,419,421,265
> ui mousemode right "translate selected models"
> view matrix models #4.2,1,0,0,-421.1,0,1,0,-40.775,0,0,1,2579.5
> volume #4 region 0,0,132,419,421,132 step 1
> volume #3 region 0,0,0,419,421,265
> volume #4 region 0,0,188,419,421,188
> ui mousemode right "translate selected models"
> view matrix models #4.2,1,0,0,-496.27,0,1,0,-308.42,0,0,1,2602.8
> ~select #4.2
Nothing selected
> hide #4.2 models
> show #!1 models
> hide #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> volume #3 style image region 0,0,132,419,421,132 step 1 showOutlineBox true
> volume #3 region 0,0,0,419,421,265 step 1
> volume #3 style surface region 0,0,0,419,421,265 step 1
> hide #!4 models
> hide #!3 models
> show #!3 models
> volume #2 style image region 0,0,132,419,421,132 step 1
> close #4
> volume #2 level 1.112,0 level 2.285,0.8 level 3.274,1
> volume #2 level 1.112,0 level 1.709,0.8154 level 3.274,1
> volume #2 level 0.4709,0 level 1.709,0.8154 level 3.274,1
> volume #2 level 0.4709,0 level 2.1,0.7538 level 3.274,1
> volume #2 level 0.4709,0 level 3.273,0.9231 level 3.274,1
> volume #2 level 0.4709,0 level 3.268,0.9231 level 3.274,1
> volume #2 level 0.4709,0 level 3.262,0.9231 level 3.274,1
> volume #2 level 0.4709,0 level 3.252,0.9231 level 3.274,1
> volume #2 level 0.4709,0 level 3.241,0.9231 level 3.274,1
> volume #2 level 0.4709,0 level 3.235,0.9231 level 3.274,1
> volume #2 level 0.4709,0 level 3.224,0.9231 level 3.274,1
> volume #2 level 0.4709,0 level 3.213,0.9231 level 3.274,1
> volume #2 level 0.4709,0 level 3.208,0.9231 level 3.274,1
> volume #2 level 0.4709,0 level 3.208,0.9077 level 3.274,1
> volume #2 level 0.4709,0 level 3.203,0.9077 level 3.274,1
> volume #2 level 0.4709,0 level 3.197,0.8923 level 3.274,1
> volume #2 level 0.4709,0 level 3.192,0.8923 level 3.274,1
> volume #2 level 0.4709,0 level 3.192,0.8769 level 3.274,1
> volume #2 level 0.4709,0 level 3.186,0.8769 level 3.274,1
> volume #2 level 0.4709,0 level 3.181,0.8769 level 3.274,1
> volume #2 level 0.4709,0 level 3.175,0.8769 level 3.274,1
> volume #2 level 0.4709,0 level 3.175,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 3.165,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 3.154,0.8462 level 3.274,1
> volume #2 level 0.4709,0 level 3.148,0.8308 level 3.274,1
> volume #2 level 0.4709,0 level 3.137,0.8308 level 3.274,1
> volume #2 level 0.4709,0 level 3.132,0.8154 level 3.274,1
> volume #2 level 0.4709,0 level 3.127,0.8154 level 3.274,1
> volume #2 level 0.4709,0 level 3.121,0.8154 level 3.274,1
> volume #2 level 0.4709,0 level 3.11,0.8154 level 3.274,1
> volume #2 level 0.4709,0 level 3.105,0.8154 level 3.274,1
> volume #2 level 0.4709,0 level 3.089,0.8 level 3.274,1
> volume #2 level 0.4709,0 level 3.061,0.8 level 3.274,1
> volume #2 level 0.4709,0 level 3.034,0.7846 level 3.274,1
> volume #2 level 0.4709,0 level 3.007,0.7846 level 3.274,1
> volume #2 level 0.4709,0 level 2.985,0.7846 level 3.274,1
> volume #2 level 0.4709,0 level 2.953,0.7846 level 3.274,1
> volume #2 level 0.4709,0 level 2.926,0.7846 level 3.274,1
> volume #2 level 0.4709,0 level 2.871,0.7846 level 3.274,1
> volume #2 level 0.4709,0 level 2.822,0.7846 level 3.274,1
> volume #2 level 0.4709,0 level 2.779,0.8 level 3.274,1
> volume #2 level 0.4709,0 level 2.746,0.8 level 3.274,1
> volume #2 level 0.4709,0 level 2.725,0.8 level 3.274,1
> volume #2 level 0.4709,0 level 2.714,0.8 level 3.274,1
> volume #2 level 0.4709,0 level 2.708,0.8 level 3.274,1
> volume #2 level 0.4709,0 level 2.692,0.8 level 3.274,1
> volume #2 level 0.4709,0 level 2.665,0.8 level 3.274,1
> volume #2 level 0.4709,0 level 2.659,0.8 level 3.274,1
> volume #2 level 0.4709,0 level 2.594,0.8154 level 3.274,1
> volume #2 level 0.4709,0 level 2.562,0.8154 level 3.274,1
> volume #2 level 0.4709,0 level 2.551,0.8154 level 3.274,1
> volume #2 level 0.4709,0 level 2.545,0.8154 level 3.274,1
> volume #2 level 0.4709,0 level 2.54,0.8154 level 3.274,1
> volume #2 level 0.4709,0 level 2.529,0.8154 level 3.274,1
> volume #2 level 0.4709,0 level 2.502,0.8308 level 3.274,1
> volume #2 level 0.4709,0 level 2.453,0.8462 level 3.274,1
> volume #2 level 0.4709,0 level 2.448,0.8462 level 3.274,1
> volume #2 level 0.4709,0 level 2.399,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.393,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.388,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.377,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.355,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.317,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.29,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.279,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.274,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.268,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.263,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.241,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.225,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.22,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.214,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.209,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.198,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.171,0.8615 level 3.274,1
> volume #2 level 0.4709,0 level 2.149,0.8769 level 3.274,1
> volume #2 level 0.4709,0 level 2.133,0.8923 level 3.274,1
> volume #2 level 0.4709,0 level 2.116,0.8923 level 3.274,1
> volume #2 level 0.4709,0 level 2.111,0.8923 level 3.274,1
> volume #2 level 0.4709,0 level 2.111,0.9077 level 3.274,1
> volume #2 level 0.4709,0 level 2.106,0.9077 level 3.274,1
> volume #2 level 0.4709,0 level 2.106,0.9231 level 3.274,1
> volume #2 level 0.4709,0 level 2.1,0.9231 level 3.274,1
> volume #2 level 0.4709,0 level 2.084,0.9538 level 3.274,1
> volume #2 level 0.4709,0 level 2.078,0.9692 level 3.274,1
> volume #2 level 0.4709,0 level 2.073,0.9692 level 3.274,1
> volume #2 level 0.4709,0 level 2.067,0.9846 level 3.274,1
> volume #2 level 0.4709,0 level 2.062,0.9846 level 3.274,1
> volume #2 level 0.4709,0 level 2.062,1 level 3.274,1
> volume #2 level 0.4709,0 level 2.057,1 level 3.274,1
> volume #2 level 0.4709,0 level 2.046,1 level 3.274,1
> volume #2 level 0.4709,0 level 2.035,1 level 3.274,1
> volume #2 level 0.4709,0 level 2.029,1 level 3.274,1
> volume #2 level 0.4709,0 level 2.024,1 level 3.274,1
> volume #2 level 0.4709,0 level 2.029,1 level 3.274,1
> volume #2 level 0.4709,0 level 2.029,0.9846 level 3.274,1
> volume #2 level 0.4709,0 level 2.035,0.9846 level 3.274,1
> volume #2 level 0.4709,0 level 2.035,0.9692 level 3.274,1
> volume #2 level 0.4709,0 level 2.035,0.9538 level 3.274,1
> volume #2 level 0.4709,0 level 2.04,0.9538 level 3.274,1
> volume #2 level 0.4709,0 level 2.04,0.9385 level 3.274,1
> volume #2 level 0.4709,0 level 2.04,0.9538 level 3.274,1
> volume #2 level 0.4709,0 level 2.035,0.9538 level 3.274,1
> volume #2 level 0.4709,0 level 2.035,0.9692 level 3.274,1
> volume #3 change image level 0,0 level 0.1,0.8 level 1,1
> ui mousemode right "translate selected models"
> hide #!3 models
> hide #!5 models
> hide #!6 models
> hide #!7 models
> show #!3 models
> ui mousemode right "translate selected models"
> ui mousemode right "move picked models"
> view matrix models #2,1,0,0,-518.97,0,1,0,-451.68,0,0,1,2483.5
> view matrix models #2,1,0,0,-488.63,0,1,0,-355.61,0,0,1,2475.8
> view matrix models #3,1,0,0,0.57217,0,1,0,-26.266,0,0,1,-75.702
> show #!5 models
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 3.3.0 NVIDIA 536.67
OpenGL renderer: NVIDIA GeForce RTX 3070/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Micro-Star International Co., Ltd.
Model: MS-7D09
OS: Microsoft Windows 11 Home (Build 22621)
Memory: 17,055,731,712
MaxProcessMemory: 137,438,953,344
CPU: 16 11th Gen Intel(R) Core(TM) i7-11700KF @ 3.60GHz
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.10.8
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.3
ParmEd: 3.2.0
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pywin32: 228
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tables: 3.6.1
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → Platform |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash using File→Open on Windows and/or in return statement |
comment:2 by , 2 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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1.3