![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#9774 closed defect (duplicate)
Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.dev202302280423 (2023-02-28 04:23:03 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x000000011bd82600 (most recent call first):
File "/private/var/folders/ly/rl784gts4m99xvbz9ljsqs4m0000gn/T/AppTranslocation/86912856-A5AF-43A4-A73C-C44D1D270258/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 284 in event_loop
File "/private/var/folders/ly/rl784gts4m99xvbz9ljsqs4m0000gn/T/AppTranslocation/86912856-A5AF-43A4-A73C-C44D1D270258/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/private/var/folders/ly/rl784gts4m99xvbz9ljsqs4m0000gn/T/AppTranslocation/86912856-A5AF-43A4-A73C-C44D1D270258/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/private/var/folders/ly/rl784gts4m99xvbz9ljsqs4m0000gn/T/AppTranslocation/86912856-A5AF-43A4-A73C-C44D1D270258/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/ly/rl784gts4m99xvbz9ljsqs4m0000gn/T/AppTranslocation/86912856-A5AF-43A4-A73C-C44D1D270258/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2023-09-13 15:42:24.00 +0300","app_version":"1.6.0","slice_uuid":"5df621ee-554e-36a8-b448-93b2334e5480","build_version":"1.6.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.6.5 (21G531)","incident_id":"6A0A9157-0E95-432A-865D-1128B5C9A6F2","name":"ChimeraX"}
{
"uptime" : 53000,
"procLaunch" : "2023-09-13 12:24:35.9879 +0300",
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro15,1",
"procStartAbsTime" : 41979971747280,
"coalitionID" : 794,
"osVersion" : {
"train" : "macOS 12.6.5",
"build" : "21G531",
"releaseType" : "User"
},
"captureTime" : "2023-09-13 15:42:04.5555 +0300",
"incident" : "6A0A9157-0E95-432A-865D-1128B5C9A6F2",
"bug_type" : "309",
"pid" : 15619,
"procExitAbsTime" : 53828239583394,
"cpuType" : "X86-64",
"procName" : "ChimeraX",
"procPath" : "\/private\/var\/folders\/*\/ChimeraX_Daily.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.0","CFBundleVersion":"1.6.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"2AB0F2FE-1C6A-5935-909A-AC9779E4A2A1","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "D2307553-8BC8-E7BE-DF5F-47E41435EDDA",
"wakeTime" : 18649,
"bridgeVersion" : {"build":"20P4252","train":"7.4"},
"sleepWakeUUID" : "F0059711-38A1-4095-9C80-343D4CE97D84",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 140737488183272\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n VM_ALLOCATE 7ffffffd6000-7ffffffd7000 [ 4K] r-x\/r-x SM=ALI ",
"isCorpse" : 1,
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"ktriageinfo" : "VM - Fault hit memory shortage\nVM - Fault hit memory shortage\nVM - Fault hit memory shortage\nVM - Fault hit memory shortage\nVM - Fault hit memory shortage\n",
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 140737488183272\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n VM_ALLOCATE 7ffffffd6000-7ffffffd7000 [ 4K] r-x\/r-x SM=ALI ",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : 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"name" : "QtCore"
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"name" : "QtGui"
},
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"path" : "\/private\/var\/folders\/*\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
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"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
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},
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"name" : "HIServices"
},
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"path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
"name" : "SkyLight"
},
{
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"uuid" : "1a04b380-76e4-3e4b-b0fc-9837533d021d",
"path" : "\/usr\/lib\/system\/libdispatch.dylib",
"name" : "libdispatch.dylib"
},
{
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"base" : 4517199872,
"CFBundleShortVersionString" : "3.9.11, (c) 2001-2021 Python Software Foundation.",
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"size" : 2527232,
"uuid" : "ef9cc1f4-5991-3213-9a9e-e68c578b6c1b",
"path" : "\/private\/var\/folders\/*\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/Python",
"name" : "Python",
"CFBundleVersion" : "3.9.11"
},
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"base" : 4508573696,
"CFBundleShortVersionString" : "1.6.0",
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"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
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"path" : "\/private\/var\/folders\/*\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
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"path" : "\/private\/var\/folders\/*\/ChimeraX_Daily.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numexpr\/interpreter.cpython-39-darwin.so",
"name" : "interpreter.cpython-39-darwin.so"
},
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"name" : "QtWebEngineCore"
}
],
"sharedCache" : {
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"uuid" : "e0be2d6e-28ef-33ab-8499-8d9d42337be7"
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"vmSummary" : "ReadOnly portion of Libraries: Total=1.5G resident=0K(0%) swapped_out_or_unallocated=1.5G(100%)\nWritable regions: Total=1.5G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.5G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 768K 6 \nActivity Tracing 256K 1 \nCG backing stores 4448K 12 \nCG image 380K 54 \nColorSync 232K 28 \nCoreAnimation 1648K 133 \nCoreGraphics 16K 3 \nCoreServices 624K 2 \nCoreUI image data 5104K 59 \nFoundation 36K 2 \nIOKit 23.3M 3 \nKernel Alloc Once 8K 1 \nMALLOC 1.1G 1189 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)\nMach message 16K 3 \nObjC additional data 15K 1 \nOpenGL GLSL 384K 4 \nSTACK GUARD 172K 43 \nStack 172.3M 44 \nStack Guard 56.0M 1 \nVM_ALLOCATE 147.0M 285 \nVM_ALLOCATE (reserved) 96.0M 2 reserved VM address space (unallocated)\n__CTF 756 1 \n__DATA 59.9M 782 \n__DATA_CONST 32.9M 351 \n__DATA_DIRTY 1663K 219 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 686.6M 229 \n__TEXT 860.4M 764 \n__UNICODE 592K 1 \ndyld private memory 1056K 3 \nmapped file 565.4M 94 \nshared memory 3104K 29 \n=========== ======= ======= \nTOTAL 3.8G 4360 \nTOTAL, minus reserved VM space 3.7G 4360 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
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},
"trialInfo" : {
"rollouts" : [
{
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"factorPackIds" : {
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}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.6.dev202302280423 (2023-02-28)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/Lucia/My Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05
> 17:51/אוניברסיטת תל אביב/Lucia - TAU shared files - MG
> lab/Results/Chimerax/Def structures/Def proj. 26062023.cxs" format session
opened ChimeraX session
> open /Users/Lucia/Downloads/GFP-GFP_DEF.cxs format session
opened ChimeraX session
> open "/Users/Lucia/Desktop/GFP,DEF AF structures.cxs" format session
No such file/path: /Users/Lucia/Desktop/GFP,DEF AF structures.cxs
> open "/Users/Lucia/My Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05
> 17:51/אוניברסיטת תל אביב/Lucia - TAU shared files - MG
> lab/Results/Chimerax/Def structures/Def proj. 26062023.cxs" format session
opened ChimeraX session
> open "/Users/Lucia/Library/CloudStorage/GoogleDrive-lucia24mo@gmail.com/My
> Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05 17:51/אוניברסיטת תל
> אביב/Lucia - TAU shared files - MG lab/Results/Def project/GFP,DEF AF
> structures.cxs"
opened ChimeraX session
> open "/Users/Lucia/My Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05
> 17:51/אוניברסיטת תל אביב/Lucia - TAU shared files - MG
> lab/Results/Chimerax/Def structures/Def proj. 26062023.cxs" format session
opened ChimeraX session
> open "/Users/Lucia/Library/CloudStorage/GoogleDrive-lucia24mo@gmail.com/My
> Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05 17:51/אוניברסיטת תל
> אביב/Lucia - TAU shared files - MG lab/Results/Def project/GFP,DEF AF
> structures.cxs" format session
opened ChimeraX session
> open "/Users/Lucia/My Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05
> 17:51/אוניברסיטת תל אביב/Lucia - TAU shared files - MG
> lab/Results/Chimerax/Def_2d83f/Def_2d83f_unrelaxed_rank_004_alphafold2_ptm_model_1_seed_000.pdb"
Chain information for
Def_2d83f_unrelaxed_rank_004_alphafold2_ptm_model_1_seed_000.pdb #3
---
Chain | Description
A | No description available
> hide #!4 models
> show #!4 models
> hide #!4 models
> show #!4 models
> hide #3 models
> show #3 models
> hide #!4 models
> open "/Users/Lucia/My Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05
> 17:51/אוניברסיטת תל אביב/Lucia - TAU shared files - MG
> lab/Results/Chimerax/Def structures/Def proj. 26062023.cxs"
opened ChimeraX session
> select #3.1/A:1
26 atoms, 25 bonds, 1 residue, 1 model selected
> select #3.1/A
708 atoms, 719 bonds, 47 residues, 1 model selected
> open "/Users/Lucia/Library/CloudStorage/GoogleDrive-lucia24mo@gmail.com/My
> Drive/Lucia.Lifshits@mail.huji.ac.il 2023-03-05 17:51/אוניברסיטת תל
> אביב/Lucia - TAU shared files - MG lab/Results/Def project/GFP,DEF AF
> structures.cxs" format session
opened ChimeraX session
> open /Applications/pdb2lr3.ent
pdb2lr3.ent title:
Solution structure of the ANTI-fungal defensin DEF4 (MTR_8G070770) from
medicago truncatula (barrel clover) [more info...]
Chain information for pdb2lr3.ent
---
Chain | Description | UniProt
3.1/A 3.2/A 3.3/A 3.4/A 3.5/A 3.6/A 3.7/A 3.8/A 3.9/A 3.10/A 3.11/A 3.12/A
3.13/A 3.14/A 3.15/A 3.16/A 3.17/A 3.18/A 3.19/A 3.20/A | defensin |
G7L736_MEDTR 1-47
> hide #!3 models
> show #!3 models
> hide #!4 models
> show #4.1 target m
> hide #!3 models
> hide #!4 models
> show #!4 models
> hide #!4 models
> hide #4.1 models
> show #!4 models
> show #4.1 models
> hide #!4 models
> hide #3.2 models
> hide #3.4 models
> hide #3.5 models
> hide #3.6 models
> hide #3.8 models
> hide #3.10 models
> hide #3.12 models
> hide #3.14 models
> hide #3.15 models
> hide #3.13 models
> hide #3.11 models
> hide #3.7 models
> hide #3.16 models
> hide #3.17 models
> hide #3.18 models
> hide #3.19 models
> hide #3.20 models
> show #!3 models
> hide #3.9 models
> hide #3.3 models
> show #!4 models
> mmaker #3.2 to #4
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
DEFGFP_6d205_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb, chain A
(#4) with pdb2lr3.ent, chain A (#3.2), sequence alignment score = 55.9
RMSD between 5 pruned atom pairs is 1.110 angstroms; (across all 28 pairs:
22.938)
> hide #!4 models
> mmaker #3.1 to #4
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker
DEFGFP_6d205_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb, chain A
(#4) with pdb2lr3.ent, chain A (#3.1), sequence alignment score = 58.9
RMSD between 6 pruned atom pairs is 1.260 angstroms; (across all 28 pairs:
23.443)
> show #!4 models
> select #4/A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #4/A:1-162
1269 atoms, 1301 bonds, 162 residues, 1 model selected
> hide #!4 models
> show #!4 models
> select #4/A:134
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #4/A:134
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #4/A:285
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #4/A:66-285
1753 atoms, 1792 bonds, 220 residues, 1 model selected
> select #4/A:32
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #4/A:32-285
2004 atoms, 2047 bonds, 254 residues, 1 model selected
> hide sel surfaces
> hide sel cartoons
> color #3 #9437ffff models
> color #3 #d783ffff models
> color #3 #9437ffff models
> select #4/A:28
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #4/A:28-285
2022 atoms, 2065 bonds, 258 residues, 1 model selected
> hide sel surfaces
> hide sel cartoons
> select #4/A:1
8 atoms, 7 bonds, 1 residue, 1 model selected
> select #4/A:1-13
98 atoms, 103 bonds, 13 residues, 1 model selected
> select #4/A:12
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #4/A:5-12
70 atoms, 75 bonds, 8 residues, 1 model selected
> select #4/A:11-12
10 atoms, 9 bonds, 2 residues, 1 model selected
> select #4/A:1-12
94 atoms, 99 bonds, 12 residues, 1 model selected
> hide sel surfaces
> hide sel cartoons
> color #3 #0433ffff models
> ui tool show "Show Sequence Viewer"
> sequence chain #3.1/A
Alignment identifier is 3.1/A
> select #3.1/A:32
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #3.1/A:1-32
454 atoms, 458 bonds, 32 residues, 1 model selected
> select #3.1/A:2-6,31-34,41-46
201 atoms, 200 bonds, 15 residues, 1 model selected
> select #3.1/A:1
26 atoms, 25 bonds, 1 residue, 1 model selected
> select #3.1/A:1-31
447 atoms, 451 bonds, 31 residues, 1 model selected
> hide sel cartoons
> view
> select #3.1/A:32
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #3.1/A:32
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #3.1/A:32
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #3.1/A:32-47
261 atoms, 263 bonds, 16 residues, 1 model selected
> select clear
> select #4/A:13
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #4/A:13-34
164 atoms, 166 bonds, 22 residues, 1 model selected
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel slab
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel tube/slab shape box
> nucleotides sel tube/slab shape muffler
> nucleotides sel ladder
> nucleotides sel stubs
> hide sel atoms
> show sel atoms
> hide sel atoms
> show sel cartoons
> hide sel cartoons
> show sel cartoons
> select #4/A:31
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #4/A:31-34
23 atoms, 22 bonds, 4 residues, 1 model selected
> hide sel cartoons
> select #4/A:30
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #4/A:30-31
8 atoms, 7 bonds, 2 residues, 1 model selected
> select #4/A:29
4 atoms, 3 bonds, 1 residue, 1 model selected
> select #4/A:29-31
12 atoms, 11 bonds, 3 residues, 1 model selected
> hide sel cartoons
> select #4/A:16
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #4/A:16-27
106 atoms, 108 bonds, 12 residues, 1 model selected
> coulombic sel
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for
DEFGFP_6d205_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb_A SES
surface #4.1: minimum, -13.27, mean -1.77, maximum 11.72
To also show corresponding color key, enter the above coulombic command and
add key true
> mlp sel
Map values for surface
"DEFGFP_6d205_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb_A SES
surface": minimum -28.03, mean -5.924, maximum 22.59
To also show corresponding color key, enter the above mlp command and add key
true
> coulombic sel
Coulombic values for
DEFGFP_6d205_unrelaxed_rank_001_alphafold2_ptm_model_1_seed_000.pdb_A SES
surface #4.1: minimum, -13.27, mean -1.77, maximum 11.72
To also show corresponding color key, enter the above coulombic command and
add key true
> color sel bychain
> color sel byhetero
> undo
> select clear
> select #3.1/A:31
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #3.1/A:31-47
268 atoms, 270 bonds, 17 residues, 1 model selected
> color bfactor sel
268 atoms, 17 residues, atom bfactor range 0 to 74.3
> coulombic sel
Using Amber 20 recommended default charges and atom types for standard
residues
Coulombic values for pdb2lr3.ent_A SES surface #3.1.1: minimum, -7.41, mean
5.86, maximum 18.37
To also show corresponding color key, enter the above coulombic command and
add key true
> undo
> select #3.1/A:31
7 atoms, 6 bonds, 1 residue, 1 model selected
> select #3.1/A:31-47
268 atoms, 270 bonds, 17 residues, 1 model selected
> hide sel surfaces
> select clear
> select #4/A:16
11 atoms, 10 bonds, 1 residue, 1 model selected
> select #4/A:16-34
143 atoms, 145 bonds, 19 residues, 1 model selected
> hide sel surfaces
> show sel surfaces
> select clear
Unsupported scale factor (0.000000) detected on Display0
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.dev202302280423 (2023-02-28)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-4.8.101
OpenGL renderer: AMD Radeon Pro 555X OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro15,1
Processor Name: 6-Core Intel Core i7
Processor Speed: 2.2 GHz
Number of Processors: 1
Total Number of Cores: 6
L2 Cache (per Core): 256 KB
L3 Cache: 9 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1968.100.17.0.0 (iBridge: 20.16.4252.0.0,0)
OS Loader Version: 540.120.3~22
Software:
System Software Overview:
System Version: macOS 12.6.5 (21G531)
Kernel Version: Darwin 21.6.0
Time since boot: 2 days 1:13
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0000
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Family: Supported, Metal GPUFamily macOS 2
Radeon Pro 555X:
Chipset Model: Radeon Pro 555X
Type: GPU
Bus: PCIe
PCIe Lane Width: x8
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x67ef
Revision ID: 0x00e3
ROM Revision: 113-C980AL-075
VBIOS Version: 113-C97501P-005
EFI Driver Version: 01.A1.075
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2880 x 1800 Retina
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
DELL P2419H:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Display Serial Number: 7QWDX63
Mirror: Off
Online: Yes
Rotation: Supported
Adapter Type: DVI or HDMI
Adapter Firmware Version: ff.c1
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.0
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.0.1
ChimeraX-AddCharge: 1.5.8
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.2
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.8
ChimeraX-AtomicLibrary: 10.0.5
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.1
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.dev202302280423
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3.3
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.11
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.8
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.6.13
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.1
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.27.3
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.2
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.6
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.38.0
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.0.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.4
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.2.0
jupyterlab-widgets: 3.0.5
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
pandas: 1.5.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.0.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.2
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.2
python-dateutil: 2.8.2
pytz: 2022.7.1
pyzmq: 25.0.0
qtconsole: 5.4.0
QtPy: 2.3.0
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.0.2
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.9.0
typing-extensions: 4.5.0
urllib3: 1.26.14
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.5
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 |
comment:2 by , 2 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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