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Opened 2 years ago
Closed 2 years ago
#9847 closed defect (duplicate)
SEQCROW: file-reader panel: KeyError: 'all_geom'
| Reported by: | Owned by: | Tony Schaefer | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "C:\\\Users\\\yt203\\\OneDrive - Thammasat
> University\\\20230920-XTB\\\GabaH-bcg-\\\Censo\\\20230926-gaba-bcg-
> censo.cxs"
Log from Tue Sep 26 12:55:23 2023UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "C:\\\Users\\\yt203\\\OneDrive - Thammasat
> University\\\20230920-XTB\\\GabaH-
> bcg-\\\Censo\\\enso_ensemble_part2_p_90.xyz"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 38, in <lambda>
lambda *args: self.fill_tree(*args))
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in fill_tree
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in <genexpr>
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
KeyError: 'all_geom'
Error processing trigger "add models":
KeyError: 'all_geom'
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
See log for complete Python traceback.
opened enso_ensemble_part2_p_90.xyz as an XYZ coordinate file movie
> style ball
Changed 61 atom styles
> preset "overall look" "publication 1 (silhouettes)"
Using preset: Overall Look / Publication 1 (Silhouettes)
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
lighting depthCue f
> show target m
[Repeated 1 time(s)]
> view clip false
> ui mousemode right distance
> distance /a:1@O7 /a:1@O3
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 38, in <lambda>
lambda *args: self.fill_tree(*args))
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in fill_tree
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in <genexpr>
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
KeyError: 'all_geom'
Error processing trigger "add models":
KeyError: 'all_geom'
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
See log for complete Python traceback.
Distance between /a UNK 1 O7 and O3: 3.460Å
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 38, in <lambda>
lambda *args: self.fill_tree(*args))
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in fill_tree
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in <genexpr>
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
KeyError: 'all_geom'
Error processing trigger "add models":
KeyError: 'all_geom'
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
See log for complete Python traceback.
> distance /a:1@O1 /a:1@H22
Distance between /a UNK 1 O1 and H22: 1.662Å
> distance /a:1@H23 /a:1@O5
Distance between /a UNK 1 H23 and O5: 1.798Å
> ui mousemode right "move label"
> save "C:/Users/yt203/OneDrive - Thammasat University/20230920-XTB/GabaH-
> bcg-/Censo/20230926-gaba-bcg-censo.cxs"
> ui mousemode right translate
> ui mousemode right "move label"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 38, in <lambda>
lambda *args: self.fill_tree(*args))
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in fill_tree
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in <genexpr>
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
KeyError: 'all_geom'
Error processing trigger "add models":
KeyError: 'all_geom'
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 38, in <lambda>
lambda *args: self.fill_tree(*args))
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in fill_tree
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in <genexpr>
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
KeyError: 'all_geom'
Error processing trigger "add models":
KeyError: 'all_geom'
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 38, in <lambda>
lambda *args: self.fill_tree(*args))
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in fill_tree
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in <genexpr>
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
KeyError: 'all_geom'
Error processing trigger "add models":
KeyError: 'all_geom'
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 38, in <lambda>
lambda *args: self.fill_tree(*args))
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in fill_tree
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in <genexpr>
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
KeyError: 'all_geom'
Error processing trigger "add models":
KeyError: 'all_geom'
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 38, in <lambda>
lambda *args: self.fill_tree(*args))
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in fill_tree
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in <genexpr>
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
KeyError: 'all_geom'
Error processing trigger "add models":
KeyError: 'all_geom'
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
See log for complete Python traceback.
> ui mousemode right distance
> distance /a:1@H20 /a:1@O5
Distance between /a UNK 1 H20 and O5: 1.907Å
> ui mousemode right "move label"
> save "C:/Users/yt203/OneDrive - Thammasat University/20230920-XTB/GabaH-
> bcg-/Censo/20230926-gaba-bcg-censo.cxs"
——— End of log from Tue Sep 26 12:55:23 2023 ———
opened ChimeraX session
> ui tool show "Managed Models"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 560, in start_tool
ti = api._api_caller.start_tool(api, session, self, tool_info)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\\__init__.py", line 1328, in start_tool
return cls._get_func(api, "start_tool")(session, bi, ti)
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\\__init__.py", line 448, in start_tool
tool = FileReaderPanel(session, ti.name)
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 33, in __init__
self.fill_tree()
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in fill_tree
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 98, in <genexpr>
if any(fr["all_geom"] and len(fr["all_geom"]) > 2 for fr in filereaders):
KeyError: 'all_geom'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 1656, in <lambda>
run(ses, "ui tool show %s" % StringArg.unparse(tool_name)))
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\cmd.py",
line 219, in ui_tool_show
bi.start_tool(session, name)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 567, in start_tool
raise ToolshedError(
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Managed
Models in bundle SEQCROW:
'all_geom'
chimerax.core.toolshed.ToolshedError: start_tool() failed for tool Managed
Models in bundle SEQCROW:
'all_geom'
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 567, in start_tool
raise ToolshedError(
See log for complete Python traceback.
> view #2.1 clip false
[Repeated 1 time(s)]
> close session
Traceback (most recent call last):
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 1018, in <lambda>
close_action.triggered.connect(lambda *, s=self, sess=session:
s.file_close_cb(sess))
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\ui\gui.py",
line 669, in file_close_cb
run(session, 'close session')
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\std_commands\close.py", line 60, in close_session
session.reset()
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\session.py", line 541, in reset
sm.reset_state(container, self)
File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\tools.py",
line 292, in reset_state
tool_inst.delete()
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 200, in delete
self.session.filereader_manager.triggers.remove_handler(self._fr_change)
AttributeError: 'FileReaderPanel' object has no attribute '_fr_change'
AttributeError: 'FileReaderPanel' object has no attribute '_fr_change'
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 200, in delete
self.session.filereader_manager.triggers.remove_handler(self._fr_change)
See log for complete Python traceback.
> ui dockable false "Managed Models"
Traceback (most recent call last):
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\filereader_panel.py", line 175, in open_nrg_plot
EnergyPlot(self.session, mdl, fr)
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\per_frame_plot.py", line 95, in __init__
self._build_ui(y_data)
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\per_frame_plot.py", line 128, in _build_ui
if fr["all_geom"] is None:
KeyError: 'all_geom'
KeyError: 'all_geom'
File "C:\Users\yt203\AppData\Local\UCSF\ChimeraX\1.6\site-
packages\SEQCROW\tools\per_frame_plot.py", line 128, in _build_ui
if fr["all_geom"] is None:
See log for complete Python traceback.
OpenGL version: 3.3.0 - Build 31.0.101.4577
OpenGL renderer: Intel(R) UHD Graphics
OpenGL vendor: Intel
Python: 3.9.11
Locale: th_TH.cp1252
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: windows
Manufacturer: LENOVO
Model: 20VD
OS: Microsoft Windows 10 Home Single Language (Build 19045)
Memory: 8,362,713,088
MaxProcessMemory: 137,438,953,344
CPU: 4 11th Gen Intel(R) Core(TM) i3-1115G4 @ 3.00GHz
OSLanguage: en-US
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2023.5.7
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.1.3
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-Clipper: 0.21.0
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.6.0
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-OpenCommands: 1.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBImages: 1.1
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-PICKLUSTER: 0.2
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-TestManager: 0.3
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-TugLigands: 1.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
comtypes: 1.1.14
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
MolecularDynamicsViewer: 1.4
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 23.1
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pywin32: 305
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
Send2Trash: 1.8.2
SEQCROW: 1.8.1
setuptools: 67.4.0
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
WMI: 1.5.1
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → Third Party |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → SEQCROW: file-reader panel: KeyError: 'all_geom' |
comment:2 by , 2 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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Duplicate of #9832