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Opened 2 years ago
Closed 2 years ago
#9927 closed defect (duplicate)
MemoryError opening mmCIF
| Reported by: | Owned by: | Greg Couch | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Input/Output | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19045
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open 2bbv format mmcif fromDatabase pdb
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #1
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #1
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #2
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #2
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> ui mousemode right "move picked models"
> view matrix models #1,1,0,0,100.27,0,1,0,6.6613e-16,0,0,1,0
> hide #!1 models
> show #!1 models
> view matrix models #2,1,0,0,201.02,0,1,0,-0.48206,0,0,1,0
> view
> view orient
> hide #!1 models
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #3
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #3
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> show #!1 models
> view matrix models #3,1,0,0,302.47,0,1,0,-0.94227,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #4
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #4
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view orient
> view matrix models #4,1,0,0,403.08,0,1,0,-1.3024,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #5
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #5
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #5,1,0,0,501.45,0,1,0,-0.94258,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #6
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #6
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #6,1,0,0,601.37,0,1,0,-0.94258,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #7
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #7
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #7,1,0,0,151.76,0,1,0,81.062,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #8
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #8
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #8,1,0,0,250.73,0,1,0,82.947,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #9
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #9
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #9,1,0,0,352.52,0,1,0,82.947,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #10
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #10
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #9,1,0,0,352.52,0,1,0,82.004,0,0,1,0
> view matrix models #10,1,0,0,453.38,0,1,0,82.947,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #11
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #11
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #11,1,0,0,552.35,0,1,0,83.89,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #12
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #12
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #12,1,0,0,201.71,0,1,0,164.95,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #13
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #13
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #13,1,0,0,300.68,0,1,0,165.89,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #14
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #14
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #14,1,0,0,403.42,0,1,0,165.89,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #15
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #15
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #15,1,0,0,503.34,0,1,0,166.84,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #16
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #16
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #16,1,0,0,251.67,0,1,0,248.84,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #17
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #17
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #17,1,0,0,352.52,0,1,0,248.84,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #18
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #18
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #18,1,0,0,454.32,0,1,0,249.78,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #19
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #19
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #19,1,0,0,301.63,0,1,0,334.62,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #20
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #20
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #20,1,0,0,402.48,0,1,0,333.67,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #21
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #21
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #21,1,0,0,49.957,0,1,0,83.89,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #22
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #22
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #22,1,0,0,100.86,0,1,0,166.84,0,0,1,0
> view matrix models #22,1,0,0,100.86,0,1,0,165.89,0,0,1,0
> view matrix models #22,1,0,0,100.86,0,1,0,166.84,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #23
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #23
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #23,1,0,0,150.81,0,1,0,248.84,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #24
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #24
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #24,1,0,0,198.88,0,1,0,331.79,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #25
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #25
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #25,1,0,0,249.78,0,1,0,418.51,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #26
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #26
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #26,1,0,0,351.58,0,1,0,419.45,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #27
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #27
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> view matrix models #27,1,0,0,301.63,0,1,0,503.34,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #28
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #28
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> hide #!28 models
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #29
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #29
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #29
> view matrix models
> #29,-1,-1.2246e-16,0,302.14,1.2246e-16,-1,0,504.44,0,0,1,0
> view matrix models
> #29,-1,-1.2246e-16,0,301.21,1.2246e-16,-1,0,503.51,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #30
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #30
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #30
> view matrix models
> #30,-1,-1.2246e-16,0,249.41,1.2246e-16,-1,0,419.34,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #31
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #31
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #31
> view matrix models
> #31,-1,-1.2246e-16,0,354.86,1.2246e-16,-1,0,416.57,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #32
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #32
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #32
> view matrix models
> #32,-1,-1.2246e-16,0,200.39,1.2246e-16,-1,0,334.25,0,0,1,0
> view matrix models
> #32,-1,-1.2246e-16,0,202.24,1.2246e-16,-1,0,334.25,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #33
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #33
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #33
> view matrix models #33,-1,-1.2246e-16,0,303.06,1.2246e-16,-1,0,332.4,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #34
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #34
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #34
> view matrix models
> #34,-1,-1.2246e-16,0,405.73,1.2246e-16,-1,0,330.55,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #35
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #35
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #35
> view matrix models
> #35,-1,-1.2246e-16,0,151.37,1.2246e-16,-1,0,250.07,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #36
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #36
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #36
> view matrix models
> #36,-1,-1.2246e-16,0,250.34,1.2246e-16,-1,0,250.07,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #37
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #37
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #37
> view matrix models
> #37,-1,-1.2246e-16,0,354.86,1.2246e-16,-1,0,245.45,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #38
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #38
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #38
> view matrix models #38,-1,-1.2246e-16,0,456.6,1.2246e-16,-1,0,244.52,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #39
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #39
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #39
> view matrix models #39,-1,-1.2246e-16,0,100.49,1.2246e-16,-1,0,165.9,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #40
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #40
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #40
> view matrix models #40,-1,-1.2246e-16,0,201.31,1.2246e-16,-1,0,162.2,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #41
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #41
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #41
> view matrix models
> #41,-1,-1.2246e-16,0,301.21,1.2246e-16,-1,0,167.75,0,0,1,0
> view matrix models #41,-1,-1.2246e-16,0,300.29,1.2246e-16,-1,0,165.9,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #42
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #42
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #42
> view matrix models
> #42,-1,-1.2246e-16,0,403.88,1.2246e-16,-1,0,164.05,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #43
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #43
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #43
> view matrix models
> #43,-1,-1.2246e-16,0,501.93,1.2246e-16,-1,0,164.98,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #44
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #44
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #44
> view matrix models
> #44,-1,-1.2246e-16,0,550.95,1.2246e-16,-1,0,82.655,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #45
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #45
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #45
> view matrix models
> #45,-1,-1.2246e-16,0,451.98,1.2246e-16,-1,0,84.505,0,0,1,0
> view matrix models
> #45,-1,-1.2246e-16,0,451.98,1.2246e-16,-1,0,82.655,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #46
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #46
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #46
> view matrix models
> #46,-1,-1.2246e-16,0,353.01,1.2246e-16,-1,0,80.805,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #47
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #47
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #47
> view matrix models #47,-1,-1.2246e-16,0,250.34,1.2246e-16,-1,0,85.43,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #48
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #48
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #48
> view matrix models
> #48,-1,-1.2246e-16,0,149.52,1.2246e-16,-1,0,86.355,0,0,1,0
> open 2bbv
2bbv title:
The refined three-dimensional structure of an insect virus At 2.8 angstroms
resolution [more info...]
Chain information for 2bbv #49
---
Chain | Description | UniProt
A B C | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 1-363
D E F | PROTEIN (BLACK BEETLE VIRUS CAPSID PROTEIN) | COAT_BBV 364-407
N | RNA (5'-R(*UP*CP*UP*UP*AP*UP*AP*UP*CP*U)-3') |
Non-standard residues in 2bbv #49
---
CA — calcium ion
2bbv mmCIF Assemblies
---
1| complete icosahedral assembly
2| icosahedral asymmetric unit
3| icosahedral pentamer
4| icosahedral 23 hexamer
5| icosahedral asymmetric unit, std point frame
6| crystal asymmetric unit, crystal frame
> turn z 180 models #49
> view matrix models #49,-1,-1.2246e-16,0,50.545,1.2246e-16,-1,0,83.58,0,0,1,0
> show #!28 models
> view matrix models #28,1,0,0,2.7749,0,1,0,-0.92496,0,0,1,0
> save C:/Users/26692/Desktop/DUF550/ChimeraX/tree_branch.pdb
> close session
> open C:\Users\26692\Desktop\DUF550\ChimeraX\tree_branch.pdb format pdb
Chain information for tree_branch.pdb
---
Chain | Description
1.1/A 1.1/B 1.1/C | No description available
1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A 1.10/A 1.11/A 1.12/A 1.13/A
1.14/A 1.15/A 1.16/A 1.17/A 1.18/A 1.19/A 1.20/A 1.21/A 1.22/A 1.23/A 1.24/A
1.25/A 1.26/A 1.27/A 1.28/A 1.29/A 1.30/A 1.31/A 1.32/A 1.33/A 1.34/A 1.35/A
1.36/A 1.37/A 1.38/A 1.39/A 1.40/A 1.41/A 1.42/A 1.43/A 1.44/A 1.45/A 1.46/A
1.47/A 1.48/A 1.49/A 1.2/B 1.3/B 1.4/B 1.5/B 1.6/B 1.7/B 1.8/B 1.9/B 1.10/B
1.11/B 1.12/B 1.13/B 1.14/B 1.15/B 1.16/B 1.17/B 1.18/B 1.19/B 1.20/B 1.21/B
1.22/B 1.23/B 1.24/B 1.25/B 1.26/B 1.27/B 1.28/B 1.29/B 1.30/B 1.31/B 1.32/B
1.33/B 1.34/B 1.35/B 1.36/B 1.37/B 1.38/B 1.39/B 1.40/B 1.41/B 1.42/B 1.43/B
1.44/B 1.45/B 1.46/B 1.47/B 1.48/B 1.49/B | No description available
1.2/C 1.3/C 1.4/C 1.5/C 1.6/C 1.7/C 1.8/C 1.9/C 1.10/C 1.11/C 1.12/C 1.13/C
1.14/C 1.15/C 1.16/C 1.17/C 1.18/C 1.19/C 1.20/C 1.21/C 1.22/C 1.23/C 1.24/C
1.25/C 1.26/C 1.27/C 1.28/C 1.29/C 1.30/C 1.31/C 1.32/C 1.33/C 1.34/C 1.35/C
1.36/C 1.37/C 1.38/C 1.39/C 1.40/C 1.41/C 1.42/C 1.43/C 1.44/C 1.45/C 1.46/C
1.47/C 1.48/C 1.49/C | No description available
1.1/D 1.1/E 1.1/F | No description available
1.2/D 1.3/D 1.4/D 1.5/D 1.6/D 1.7/D 1.8/D 1.9/D 1.10/D 1.11/D 1.12/D 1.13/D
1.14/D 1.15/D 1.16/D 1.17/D 1.18/D 1.19/D 1.20/D 1.21/D 1.22/D 1.23/D 1.24/D
1.25/D 1.26/D 1.27/D 1.28/D 1.29/D 1.30/D 1.31/D 1.32/D 1.33/D 1.34/D 1.35/D
1.36/D 1.37/D 1.38/D 1.39/D 1.40/D 1.41/D 1.42/D 1.43/D 1.44/D 1.45/D 1.46/D
1.47/D 1.48/D 1.49/D 1.2/E 1.3/E 1.4/E 1.5/E 1.6/E 1.7/E 1.8/E 1.9/E 1.10/E
1.11/E 1.12/E 1.13/E 1.14/E 1.15/E 1.16/E 1.17/E 1.18/E 1.19/E 1.20/E 1.21/E
1.22/E 1.23/E 1.24/E 1.25/E 1.26/E 1.27/E 1.28/E 1.29/E 1.30/E 1.31/E 1.32/E
1.33/E 1.34/E 1.35/E 1.36/E 1.37/E 1.38/E 1.39/E 1.40/E 1.41/E 1.42/E 1.43/E
1.44/E 1.45/E 1.46/E 1.47/E 1.48/E 1.49/E 1.2/F 1.3/F 1.4/F 1.5/F 1.6/F 1.7/F
1.8/F 1.9/F 1.10/F 1.11/F 1.12/F 1.13/F 1.14/F 1.15/F 1.16/F 1.17/F 1.18/F
1.19/F 1.20/F 1.21/F 1.22/F 1.23/F 1.24/F 1.25/F 1.26/F 1.27/F 1.28/F 1.29/F
1.30/F 1.31/F 1.32/F 1.33/F 1.34/F 1.35/F 1.36/F 1.37/F 1.38/F 1.39/F 1.40/F
1.41/F 1.42/F 1.43/F 1.44/F 1.45/F 1.46/F 1.47/F 1.48/F 1.49/F | No
description available
1.1/N 1.2/N 1.3/N 1.4/N 1.5/N 1.6/N 1.7/N 1.8/N 1.9/N 1.10/N 1.11/N 1.12/N
1.13/N 1.14/N 1.15/N 1.16/N 1.17/N 1.18/N 1.19/N 1.20/N 1.21/N 1.22/N 1.23/N
1.24/N 1.25/N 1.26/N 1.27/N 1.28/N 1.29/N 1.30/N 1.31/N 1.32/N 1.33/N 1.34/N
1.35/N 1.36/N 1.37/N 1.38/N 1.39/N 1.40/N 1.41/N 1.42/N 1.43/N 1.44/N 1.45/N
1.46/N 1.47/N 1.48/N 1.49/N | No description available
> set bgColor white
> open C:\Users\26692\Desktop\DUF550\ChimeraX\tree_branch.pdb format pdb
Chain information for tree_branch.pdb
---
Chain | Description
2.1/A 2.1/B 2.1/C | No description available
2.2/A 2.3/A 2.4/A 2.5/A 2.6/A 2.7/A 2.8/A 2.9/A 2.10/A 2.11/A 2.12/A 2.13/A
2.14/A 2.15/A 2.16/A 2.17/A 2.18/A 2.19/A 2.20/A 2.21/A 2.22/A 2.23/A 2.24/A
2.25/A 2.26/A 2.27/A 2.28/A 2.29/A 2.30/A 2.31/A 2.32/A 2.33/A 2.34/A 2.35/A
2.36/A 2.37/A 2.38/A 2.39/A 2.40/A 2.41/A 2.42/A 2.43/A 2.44/A 2.45/A 2.46/A
2.47/A 2.48/A 2.49/A 2.2/B 2.3/B 2.4/B 2.5/B 2.6/B 2.7/B 2.8/B 2.9/B 2.10/B
2.11/B 2.12/B 2.13/B 2.14/B 2.15/B 2.16/B 2.17/B 2.18/B 2.19/B 2.20/B 2.21/B
2.22/B 2.23/B 2.24/B 2.25/B 2.26/B 2.27/B 2.28/B 2.29/B 2.30/B 2.31/B 2.32/B
2.33/B 2.34/B 2.35/B 2.36/B 2.37/B 2.38/B 2.39/B 2.40/B 2.41/B 2.42/B 2.43/B
2.44/B 2.45/B 2.46/B 2.47/B 2.48/B 2.49/B | No description available
2.2/C 2.3/C 2.4/C 2.5/C 2.6/C 2.7/C 2.8/C 2.9/C 2.10/C 2.11/C 2.12/C 2.13/C
2.14/C 2.15/C 2.16/C 2.17/C 2.18/C 2.19/C 2.20/C 2.21/C 2.22/C 2.23/C 2.24/C
2.25/C 2.26/C 2.27/C 2.28/C 2.29/C 2.30/C 2.31/C 2.32/C 2.33/C 2.34/C 2.35/C
2.36/C 2.37/C 2.38/C 2.39/C 2.40/C 2.41/C 2.42/C 2.43/C 2.44/C 2.45/C 2.46/C
2.47/C 2.48/C 2.49/C | No description available
2.1/D 2.1/E 2.1/F | No description available
2.2/D 2.3/D 2.4/D 2.5/D 2.6/D 2.7/D 2.8/D 2.9/D 2.10/D 2.11/D 2.12/D 2.13/D
2.14/D 2.15/D 2.16/D 2.17/D 2.18/D 2.19/D 2.20/D 2.21/D 2.22/D 2.23/D 2.24/D
2.25/D 2.26/D 2.27/D 2.28/D 2.29/D 2.30/D 2.31/D 2.32/D 2.33/D 2.34/D 2.35/D
2.36/D 2.37/D 2.38/D 2.39/D 2.40/D 2.41/D 2.42/D 2.43/D 2.44/D 2.45/D 2.46/D
2.47/D 2.48/D 2.49/D 2.2/E 2.3/E 2.4/E 2.5/E 2.6/E 2.7/E 2.8/E 2.9/E 2.10/E
2.11/E 2.12/E 2.13/E 2.14/E 2.15/E 2.16/E 2.17/E 2.18/E 2.19/E 2.20/E 2.21/E
2.22/E 2.23/E 2.24/E 2.25/E 2.26/E 2.27/E 2.28/E 2.29/E 2.30/E 2.31/E 2.32/E
2.33/E 2.34/E 2.35/E 2.36/E 2.37/E 2.38/E 2.39/E 2.40/E 2.41/E 2.42/E 2.43/E
2.44/E 2.45/E 2.46/E 2.47/E 2.48/E 2.49/E 2.2/F 2.3/F 2.4/F 2.5/F 2.6/F 2.7/F
2.8/F 2.9/F 2.10/F 2.11/F 2.12/F 2.13/F 2.14/F 2.15/F 2.16/F 2.17/F 2.18/F
2.19/F 2.20/F 2.21/F 2.22/F 2.23/F 2.24/F 2.25/F 2.26/F 2.27/F 2.28/F 2.29/F
2.30/F 2.31/F 2.32/F 2.33/F 2.34/F 2.35/F 2.36/F 2.37/F 2.38/F 2.39/F 2.40/F
2.41/F 2.42/F 2.43/F 2.44/F 2.45/F 2.46/F 2.47/F 2.48/F 2.49/F | No
description available
2.1/N 2.2/N 2.3/N 2.4/N 2.5/N 2.6/N 2.7/N 2.8/N 2.9/N 2.10/N 2.11/N 2.12/N
2.13/N 2.14/N 2.15/N 2.16/N 2.17/N 2.18/N 2.19/N 2.20/N 2.21/N 2.22/N 2.23/N
2.24/N 2.25/N 2.26/N 2.27/N 2.28/N 2.29/N 2.30/N 2.31/N 2.32/N 2.33/N 2.34/N
2.35/N 2.36/N 2.37/N 2.38/N 2.39/N 2.40/N 2.41/N 2.42/N 2.43/N 2.44/N 2.45/N
2.46/N 2.47/N 2.48/N 2.49/N | No description available
> open C:\Users\26692\Desktop\DUF550\ChimeraX\tree_branch.pdb format pdb
Chain information for tree_branch.pdb
---
Chain | Description
3.1/A 3.1/B 3.1/C | No description available
3.2/A 3.3/A 3.4/A 3.5/A 3.6/A 3.7/A 3.8/A 3.9/A 3.10/A 3.11/A 3.12/A 3.13/A
3.14/A 3.15/A 3.16/A 3.17/A 3.18/A 3.19/A 3.20/A 3.21/A 3.22/A 3.23/A 3.24/A
3.25/A 3.26/A 3.27/A 3.28/A 3.29/A 3.30/A 3.31/A 3.32/A 3.33/A 3.34/A 3.35/A
3.36/A 3.37/A 3.38/A 3.39/A 3.40/A 3.41/A 3.42/A 3.43/A 3.44/A 3.45/A 3.46/A
3.47/A 3.48/A 3.49/A 3.2/B 3.3/B 3.4/B 3.5/B 3.6/B 3.7/B 3.8/B 3.9/B 3.10/B
3.11/B 3.12/B 3.13/B 3.14/B 3.15/B 3.16/B 3.17/B 3.18/B 3.19/B 3.20/B 3.21/B
3.22/B 3.23/B 3.24/B 3.25/B 3.26/B 3.27/B 3.28/B 3.29/B 3.30/B 3.31/B 3.32/B
3.33/B 3.34/B 3.35/B 3.36/B 3.37/B 3.38/B 3.39/B 3.40/B 3.41/B 3.42/B 3.43/B
3.44/B 3.45/B 3.46/B 3.47/B 3.48/B 3.49/B | No description available
3.2/C 3.3/C 3.4/C 3.5/C 3.6/C 3.7/C 3.8/C 3.9/C 3.10/C 3.11/C 3.12/C 3.13/C
3.14/C 3.15/C 3.16/C 3.17/C 3.18/C 3.19/C 3.20/C 3.21/C 3.22/C 3.23/C 3.24/C
3.25/C 3.26/C 3.27/C 3.28/C 3.29/C 3.30/C 3.31/C 3.32/C 3.33/C 3.34/C 3.35/C
3.36/C 3.37/C 3.38/C 3.39/C 3.40/C 3.41/C 3.42/C 3.43/C 3.44/C 3.45/C 3.46/C
3.47/C 3.48/C 3.49/C | No description available
3.1/D 3.1/E 3.1/F | No description available
3.2/D 3.3/D 3.4/D 3.5/D 3.6/D 3.7/D 3.8/D 3.9/D 3.10/D 3.11/D 3.12/D 3.13/D
3.14/D 3.15/D 3.16/D 3.17/D 3.18/D 3.19/D 3.20/D 3.21/D 3.22/D 3.23/D 3.24/D
3.25/D 3.26/D 3.27/D 3.28/D 3.29/D 3.30/D 3.31/D 3.32/D 3.33/D 3.34/D 3.35/D
3.36/D 3.37/D 3.38/D 3.39/D 3.40/D 3.41/D 3.42/D 3.43/D 3.44/D 3.45/D 3.46/D
3.47/D 3.48/D 3.49/D 3.2/E 3.3/E 3.4/E 3.5/E 3.6/E 3.7/E 3.8/E 3.9/E 3.10/E
3.11/E 3.12/E 3.13/E 3.14/E 3.15/E 3.16/E 3.17/E 3.18/E 3.19/E 3.20/E 3.21/E
3.22/E 3.23/E 3.24/E 3.25/E 3.26/E 3.27/E 3.28/E 3.29/E 3.30/E 3.31/E 3.32/E
3.33/E 3.34/E 3.35/E 3.36/E 3.37/E 3.38/E 3.39/E 3.40/E 3.41/E 3.42/E 3.43/E
3.44/E 3.45/E 3.46/E 3.47/E 3.48/E 3.49/E 3.2/F 3.3/F 3.4/F 3.5/F 3.6/F 3.7/F
3.8/F 3.9/F 3.10/F 3.11/F 3.12/F 3.13/F 3.14/F 3.15/F 3.16/F 3.17/F 3.18/F
3.19/F 3.20/F 3.21/F 3.22/F 3.23/F 3.24/F 3.25/F 3.26/F 3.27/F 3.28/F 3.29/F
3.30/F 3.31/F 3.32/F 3.33/F 3.34/F 3.35/F 3.36/F 3.37/F 3.38/F 3.39/F 3.40/F
3.41/F 3.42/F 3.43/F 3.44/F 3.45/F 3.46/F 3.47/F 3.48/F 3.49/F | No
description available
3.1/N 3.2/N 3.3/N 3.4/N 3.5/N 3.6/N 3.7/N 3.8/N 3.9/N 3.10/N 3.11/N 3.12/N
3.13/N 3.14/N 3.15/N 3.16/N 3.17/N 3.18/N 3.19/N 3.20/N 3.21/N 3.22/N 3.23/N
3.24/N 3.25/N 3.26/N 3.27/N 3.28/N 3.29/N 3.30/N 3.31/N 3.32/N 3.33/N 3.34/N
3.35/N 3.36/N 3.37/N 3.38/N 3.39/N 3.40/N 3.41/N 3.42/N 3.43/N 3.44/N 3.45/N
3.46/N 3.47/N 3.48/N 3.49/N | No description available
> open C:\Users\26692\Desktop\DUF550\ChimeraX\tree_branch.pdb format pdb
Chain information for tree_branch.pdb
---
Chain | Description
4.1/A 4.1/B 4.1/C | No description available
4.2/A 4.3/A 4.4/A 4.5/A 4.6/A 4.7/A 4.8/A 4.9/A 4.10/A 4.11/A 4.12/A 4.13/A
4.14/A 4.15/A 4.16/A 4.17/A 4.18/A 4.19/A 4.20/A 4.21/A 4.22/A 4.23/A 4.24/A
4.25/A 4.26/A 4.27/A 4.28/A 4.29/A 4.30/A 4.31/A 4.32/A 4.33/A 4.34/A 4.35/A
4.36/A 4.37/A 4.38/A 4.39/A 4.40/A 4.41/A 4.42/A 4.43/A 4.44/A 4.45/A 4.46/A
4.47/A 4.48/A 4.49/A 4.2/B 4.3/B 4.4/B 4.5/B 4.6/B 4.7/B 4.8/B 4.9/B 4.10/B
4.11/B 4.12/B 4.13/B 4.14/B 4.15/B 4.16/B 4.17/B 4.18/B 4.19/B 4.20/B 4.21/B
4.22/B 4.23/B 4.24/B 4.25/B 4.26/B 4.27/B 4.28/B 4.29/B 4.30/B 4.31/B 4.32/B
4.33/B 4.34/B 4.35/B 4.36/B 4.37/B 4.38/B 4.39/B 4.40/B 4.41/B 4.42/B 4.43/B
4.44/B 4.45/B 4.46/B 4.47/B 4.48/B 4.49/B | No description available
4.2/C 4.3/C 4.4/C 4.5/C 4.6/C 4.7/C 4.8/C 4.9/C 4.10/C 4.11/C 4.12/C 4.13/C
4.14/C 4.15/C 4.16/C 4.17/C 4.18/C 4.19/C 4.20/C 4.21/C 4.22/C 4.23/C 4.24/C
4.25/C 4.26/C 4.27/C 4.28/C 4.29/C 4.30/C 4.31/C 4.32/C 4.33/C 4.34/C 4.35/C
4.36/C 4.37/C 4.38/C 4.39/C 4.40/C 4.41/C 4.42/C 4.43/C 4.44/C 4.45/C 4.46/C
4.47/C 4.48/C 4.49/C | No description available
4.1/D 4.1/E 4.1/F | No description available
4.2/D 4.3/D 4.4/D 4.5/D 4.6/D 4.7/D 4.8/D 4.9/D 4.10/D 4.11/D 4.12/D 4.13/D
4.14/D 4.15/D 4.16/D 4.17/D 4.18/D 4.19/D 4.20/D 4.21/D 4.22/D 4.23/D 4.24/D
4.25/D 4.26/D 4.27/D 4.28/D 4.29/D 4.30/D 4.31/D 4.32/D 4.33/D 4.34/D 4.35/D
4.36/D 4.37/D 4.38/D 4.39/D 4.40/D 4.41/D 4.42/D 4.43/D 4.44/D 4.45/D 4.46/D
4.47/D 4.48/D 4.49/D 4.2/E 4.3/E 4.4/E 4.5/E 4.6/E 4.7/E 4.8/E 4.9/E 4.10/E
4.11/E 4.12/E 4.13/E 4.14/E 4.15/E 4.16/E 4.17/E 4.18/E 4.19/E 4.20/E 4.21/E
4.22/E 4.23/E 4.24/E 4.25/E 4.26/E 4.27/E 4.28/E 4.29/E 4.30/E 4.31/E 4.32/E
4.33/E 4.34/E 4.35/E 4.36/E 4.37/E 4.38/E 4.39/E 4.40/E 4.41/E 4.42/E 4.43/E
4.44/E 4.45/E 4.46/E 4.47/E 4.48/E 4.49/E 4.2/F 4.3/F 4.4/F 4.5/F 4.6/F 4.7/F
4.8/F 4.9/F 4.10/F 4.11/F 4.12/F 4.13/F 4.14/F 4.15/F 4.16/F 4.17/F 4.18/F
4.19/F 4.20/F 4.21/F 4.22/F 4.23/F 4.24/F 4.25/F 4.26/F 4.27/F 4.28/F 4.29/F
4.30/F 4.31/F 4.32/F 4.33/F 4.34/F 4.35/F 4.36/F 4.37/F 4.38/F 4.39/F 4.40/F
4.41/F 4.42/F 4.43/F 4.44/F 4.45/F 4.46/F 4.47/F 4.48/F 4.49/F | No
description available
4.1/N 4.2/N 4.3/N 4.4/N 4.5/N 4.6/N 4.7/N 4.8/N 4.9/N 4.10/N 4.11/N 4.12/N
4.13/N 4.14/N 4.15/N 4.16/N 4.17/N 4.18/N 4.19/N 4.20/N 4.21/N 4.22/N 4.23/N
4.24/N 4.25/N 4.26/N 4.27/N 4.28/N 4.29/N 4.30/N 4.31/N 4.32/N 4.33/N 4.34/N
4.35/N 4.36/N 4.37/N 4.38/N 4.39/N 4.40/N 4.41/N 4.42/N 4.43/N 4.44/N 4.45/N
4.46/N 4.47/N 4.48/N 4.49/N | No description available
> open C:\Users\26692\Desktop\DUF550\ChimeraX\tree_branch.pdb format pdb
Chain information for tree_branch.pdb
---
Chain | Description
5.1/A 5.1/B 5.1/C | No description available
5.2/A 5.3/A 5.4/A 5.5/A 5.6/A 5.7/A 5.8/A 5.9/A 5.10/A 5.11/A 5.12/A 5.13/A
5.14/A 5.15/A 5.16/A 5.17/A 5.18/A 5.19/A 5.20/A 5.21/A 5.22/A 5.23/A 5.24/A
5.25/A 5.26/A 5.27/A 5.28/A 5.29/A 5.30/A 5.31/A 5.32/A 5.33/A 5.34/A 5.35/A
5.36/A 5.37/A 5.38/A 5.39/A 5.40/A 5.41/A 5.42/A 5.43/A 5.44/A 5.45/A 5.46/A
5.47/A 5.48/A 5.49/A 5.2/B 5.3/B 5.4/B 5.5/B 5.6/B 5.7/B 5.8/B 5.9/B 5.10/B
5.11/B 5.12/B 5.13/B 5.14/B 5.15/B 5.16/B 5.17/B 5.18/B 5.19/B 5.20/B 5.21/B
5.22/B 5.23/B 5.24/B 5.25/B 5.26/B 5.27/B 5.28/B 5.29/B 5.30/B 5.31/B 5.32/B
5.33/B 5.34/B 5.35/B 5.36/B 5.37/B 5.38/B 5.39/B 5.40/B 5.41/B 5.42/B 5.43/B
5.44/B 5.45/B 5.46/B 5.47/B 5.48/B 5.49/B | No description available
5.2/C 5.3/C 5.4/C 5.5/C 5.6/C 5.7/C 5.8/C 5.9/C 5.10/C 5.11/C 5.12/C 5.13/C
5.14/C 5.15/C 5.16/C 5.17/C 5.18/C 5.19/C 5.20/C 5.21/C 5.22/C 5.23/C 5.24/C
5.25/C 5.26/C 5.27/C 5.28/C 5.29/C 5.30/C 5.31/C 5.32/C 5.33/C 5.34/C 5.35/C
5.36/C 5.37/C 5.38/C 5.39/C 5.40/C 5.41/C 5.42/C 5.43/C 5.44/C 5.45/C 5.46/C
5.47/C 5.48/C 5.49/C | No description available
5.1/D 5.1/E 5.1/F | No description available
5.2/D 5.3/D 5.4/D 5.5/D 5.6/D 5.7/D 5.8/D 5.9/D 5.10/D 5.11/D 5.12/D 5.13/D
5.14/D 5.15/D 5.16/D 5.17/D 5.18/D 5.19/D 5.20/D 5.21/D 5.22/D 5.23/D 5.24/D
5.25/D 5.26/D 5.27/D 5.28/D 5.29/D 5.30/D 5.31/D 5.32/D 5.33/D 5.34/D 5.35/D
5.36/D 5.37/D 5.38/D 5.39/D 5.40/D 5.41/D 5.42/D 5.43/D 5.44/D 5.45/D 5.46/D
5.47/D 5.48/D 5.49/D 5.2/E 5.3/E 5.4/E 5.5/E 5.6/E 5.7/E 5.8/E 5.9/E 5.10/E
5.11/E 5.12/E 5.13/E 5.14/E 5.15/E 5.16/E 5.17/E 5.18/E 5.19/E 5.20/E 5.21/E
5.22/E 5.23/E 5.24/E 5.25/E 5.26/E 5.27/E 5.28/E 5.29/E 5.30/E 5.31/E 5.32/E
5.33/E 5.34/E 5.35/E 5.36/E 5.37/E 5.38/E 5.39/E 5.40/E 5.41/E 5.42/E 5.43/E
5.44/E 5.45/E 5.46/E 5.47/E 5.48/E 5.49/E 5.2/F 5.3/F 5.4/F 5.5/F 5.6/F 5.7/F
5.8/F 5.9/F 5.10/F 5.11/F 5.12/F 5.13/F 5.14/F 5.15/F 5.16/F 5.17/F 5.18/F
5.19/F 5.20/F 5.21/F 5.22/F 5.23/F 5.24/F 5.25/F 5.26/F 5.27/F 5.28/F 5.29/F
5.30/F 5.31/F 5.32/F 5.33/F 5.34/F 5.35/F 5.36/F 5.37/F 5.38/F 5.39/F 5.40/F
5.41/F 5.42/F 5.43/F 5.44/F 5.45/F 5.46/F 5.47/F 5.48/F 5.49/F | No
description available
5.1/N 5.2/N 5.3/N 5.4/N 5.5/N 5.6/N 5.7/N 5.8/N 5.9/N 5.10/N 5.11/N 5.12/N
5.13/N 5.14/N 5.15/N 5.16/N 5.17/N 5.18/N 5.19/N 5.20/N 5.21/N 5.22/N 5.23/N
5.24/N 5.25/N 5.26/N 5.27/N 5.28/N 5.29/N 5.30/N 5.31/N 5.32/N 5.33/N 5.34/N
5.35/N 5.36/N 5.37/N 5.38/N 5.39/N 5.40/N 5.41/N 5.42/N 5.43/N 5.44/N 5.45/N
5.46/N 5.47/N 5.48/N 5.49/N | No description available
> open C:\Users\26692\Desktop\DUF550\ChimeraX\tree_branch.pdb format pdb
Chain information for tree_branch.pdb
---
Chain | Description
6.1/A 6.1/B 6.1/C | No description available
6.2/A 6.3/A 6.4/A 6.5/A 6.6/A 6.7/A 6.8/A 6.9/A 6.10/A 6.11/A 6.12/A 6.13/A
6.14/A 6.15/A 6.16/A 6.17/A 6.18/A 6.19/A 6.20/A 6.21/A 6.22/A 6.23/A 6.24/A
6.25/A 6.26/A 6.27/A 6.28/A 6.29/A 6.30/A 6.31/A 6.32/A 6.33/A 6.34/A 6.35/A
6.36/A 6.37/A 6.38/A 6.39/A 6.40/A 6.41/A 6.42/A 6.43/A 6.44/A 6.45/A 6.46/A
6.47/A 6.48/A 6.49/A 6.2/B 6.3/B 6.4/B 6.5/B 6.6/B 6.7/B 6.8/B 6.9/B 6.10/B
6.11/B 6.12/B 6.13/B 6.14/B 6.15/B 6.16/B 6.17/B 6.18/B 6.19/B 6.20/B 6.21/B
6.22/B 6.23/B 6.24/B 6.25/B 6.26/B 6.27/B 6.28/B 6.29/B 6.30/B 6.31/B 6.32/B
6.33/B 6.34/B 6.35/B 6.36/B 6.37/B 6.38/B 6.39/B 6.40/B 6.41/B 6.42/B 6.43/B
6.44/B 6.45/B 6.46/B 6.47/B 6.48/B 6.49/B | No description available
6.2/C 6.3/C 6.4/C 6.5/C 6.6/C 6.7/C 6.8/C 6.9/C 6.10/C 6.11/C 6.12/C 6.13/C
6.14/C 6.15/C 6.16/C 6.17/C 6.18/C 6.19/C 6.20/C 6.21/C 6.22/C 6.23/C 6.24/C
6.25/C 6.26/C 6.27/C 6.28/C 6.29/C 6.30/C 6.31/C 6.32/C 6.33/C 6.34/C 6.35/C
6.36/C 6.37/C 6.38/C 6.39/C 6.40/C 6.41/C 6.42/C 6.43/C 6.44/C 6.45/C 6.46/C
6.47/C 6.48/C 6.49/C | No description available
6.1/D 6.1/E 6.1/F | No description available
6.2/D 6.3/D 6.4/D 6.5/D 6.6/D 6.7/D 6.8/D 6.9/D 6.10/D 6.11/D 6.12/D 6.13/D
6.14/D 6.15/D 6.16/D 6.17/D 6.18/D 6.19/D 6.20/D 6.21/D 6.22/D 6.23/D 6.24/D
6.25/D 6.26/D 6.27/D 6.28/D 6.29/D 6.30/D 6.31/D 6.32/D 6.33/D 6.34/D 6.35/D
6.36/D 6.37/D 6.38/D 6.39/D 6.40/D 6.41/D 6.42/D 6.43/D 6.44/D 6.45/D 6.46/D
6.47/D 6.48/D 6.49/D 6.2/E 6.3/E 6.4/E 6.5/E 6.6/E 6.7/E 6.8/E 6.9/E 6.10/E
6.11/E 6.12/E 6.13/E 6.14/E 6.15/E 6.16/E 6.17/E 6.18/E 6.19/E 6.20/E 6.21/E
6.22/E 6.23/E 6.24/E 6.25/E 6.26/E 6.27/E 6.28/E 6.29/E 6.30/E 6.31/E 6.32/E
6.33/E 6.34/E 6.35/E 6.36/E 6.37/E 6.38/E 6.39/E 6.40/E 6.41/E 6.42/E 6.43/E
6.44/E 6.45/E 6.46/E 6.47/E 6.48/E 6.49/E 6.2/F 6.3/F 6.4/F 6.5/F 6.6/F 6.7/F
6.8/F 6.9/F 6.10/F 6.11/F 6.12/F 6.13/F 6.14/F 6.15/F 6.16/F 6.17/F 6.18/F
6.19/F 6.20/F 6.21/F 6.22/F 6.23/F 6.24/F 6.25/F 6.26/F 6.27/F 6.28/F 6.29/F
6.30/F 6.31/F 6.32/F 6.33/F 6.34/F 6.35/F 6.36/F 6.37/F 6.38/F 6.39/F 6.40/F
6.41/F 6.42/F 6.43/F 6.44/F 6.45/F 6.46/F 6.47/F 6.48/F 6.49/F | No
description available
6.1/N 6.2/N 6.3/N 6.4/N 6.5/N 6.6/N 6.7/N 6.8/N 6.9/N 6.10/N 6.11/N 6.12/N
6.13/N 6.14/N 6.15/N 6.16/N 6.17/N 6.18/N 6.19/N 6.20/N 6.21/N 6.22/N 6.23/N
6.24/N 6.25/N 6.26/N 6.27/N 6.28/N 6.29/N 6.30/N 6.31/N 6.32/N 6.33/N 6.34/N
6.35/N 6.36/N 6.37/N 6.38/N 6.39/N 6.40/N 6.41/N 6.42/N 6.43/N 6.44/N 6.45/N
6.46/N 6.47/N 6.48/N 6.49/N | No description available
> open C:\Users\26692\Desktop\DUF550\ChimeraX\tree_branch.pdb format pdb
Chain information for tree_branch.pdb
---
Chain | Description
7.1/A 7.1/B 7.1/C | No description available
7.2/A 7.3/A 7.4/A 7.5/A 7.6/A 7.7/A 7.8/A 7.9/A 7.10/A 7.11/A 7.12/A 7.13/A
7.14/A 7.15/A 7.16/A 7.17/A 7.18/A 7.19/A 7.20/A 7.21/A 7.22/A 7.23/A 7.24/A
7.25/A 7.26/A 7.27/A 7.28/A 7.29/A 7.30/A 7.31/A 7.32/A 7.33/A 7.34/A 7.35/A
7.36/A 7.37/A 7.38/A 7.39/A 7.40/A 7.41/A 7.42/A 7.43/A 7.44/A 7.45/A 7.46/A
7.47/A 7.48/A 7.49/A 7.2/B 7.3/B 7.4/B 7.5/B 7.6/B 7.7/B 7.8/B 7.9/B 7.10/B
7.11/B 7.12/B 7.13/B 7.14/B 7.15/B 7.16/B 7.17/B 7.18/B 7.19/B 7.20/B 7.21/B
7.22/B 7.23/B 7.24/B 7.25/B 7.26/B 7.27/B 7.28/B 7.29/B 7.30/B 7.31/B 7.32/B
7.33/B 7.34/B 7.35/B 7.36/B 7.37/B 7.38/B 7.39/B 7.40/B 7.41/B 7.42/B 7.43/B
7.44/B 7.45/B 7.46/B 7.47/B 7.48/B 7.49/B | No description available
7.2/C 7.3/C 7.4/C 7.5/C 7.6/C 7.7/C 7.8/C 7.9/C 7.10/C 7.11/C 7.12/C 7.13/C
7.14/C 7.15/C 7.16/C 7.17/C 7.18/C 7.19/C 7.20/C 7.21/C 7.22/C 7.23/C 7.24/C
7.25/C 7.26/C 7.27/C 7.28/C 7.29/C 7.30/C 7.31/C 7.32/C 7.33/C 7.34/C 7.35/C
7.36/C 7.37/C 7.38/C 7.39/C 7.40/C 7.41/C 7.42/C 7.43/C 7.44/C 7.45/C 7.46/C
7.47/C 7.48/C 7.49/C | No description available
7.1/D 7.1/E 7.1/F | No description available
7.2/D 7.3/D 7.4/D 7.5/D 7.6/D 7.7/D 7.8/D 7.9/D 7.10/D 7.11/D 7.12/D 7.13/D
7.14/D 7.15/D 7.16/D 7.17/D 7.18/D 7.19/D 7.20/D 7.21/D 7.22/D 7.23/D 7.24/D
7.25/D 7.26/D 7.27/D 7.28/D 7.29/D 7.30/D 7.31/D 7.32/D 7.33/D 7.34/D 7.35/D
7.36/D 7.37/D 7.38/D 7.39/D 7.40/D 7.41/D 7.42/D 7.43/D 7.44/D 7.45/D 7.46/D
7.47/D 7.48/D 7.49/D 7.2/E 7.3/E 7.4/E 7.5/E 7.6/E 7.7/E 7.8/E 7.9/E 7.10/E
7.11/E 7.12/E 7.13/E 7.14/E 7.15/E 7.16/E 7.17/E 7.18/E 7.19/E 7.20/E 7.21/E
7.22/E 7.23/E 7.24/E 7.25/E 7.26/E 7.27/E 7.28/E 7.29/E 7.30/E 7.31/E 7.32/E
7.33/E 7.34/E 7.35/E 7.36/E 7.37/E 7.38/E 7.39/E 7.40/E 7.41/E 7.42/E 7.43/E
7.44/E 7.45/E 7.46/E 7.47/E 7.48/E 7.49/E 7.2/F 7.3/F 7.4/F 7.5/F 7.6/F 7.7/F
7.8/F 7.9/F 7.10/F 7.11/F 7.12/F 7.13/F 7.14/F 7.15/F 7.16/F 7.17/F 7.18/F
7.19/F 7.20/F 7.21/F 7.22/F 7.23/F 7.24/F 7.25/F 7.26/F 7.27/F 7.28/F 7.29/F
7.30/F 7.31/F 7.32/F 7.33/F 7.34/F 7.35/F 7.36/F 7.37/F 7.38/F 7.39/F 7.40/F
7.41/F 7.42/F 7.43/F 7.44/F 7.45/F 7.46/F 7.47/F 7.48/F 7.49/F | No
description available
7.1/N 7.2/N 7.3/N 7.4/N 7.5/N 7.6/N 7.7/N 7.8/N 7.9/N 7.10/N 7.11/N 7.12/N
7.13/N 7.14/N 7.15/N 7.16/N 7.17/N 7.18/N 7.19/N 7.20/N 7.21/N 7.22/N 7.23/N
7.24/N 7.25/N 7.26/N 7.27/N 7.28/N 7.29/N 7.30/N 7.31/N 7.32/N 7.33/N 7.34/N
7.35/N 7.36/N 7.37/N 7.38/N 7.39/N 7.40/N 7.41/N 7.42/N 7.43/N 7.44/N 7.45/N
7.46/N 7.47/N 7.48/N 7.49/N | No description available
> open C:\Users\26692\Desktop\DUF550\ChimeraX\tree_branch.pdb format pdb
Chain information for tree_branch.pdb
---
Chain | Description
8.1/A 8.1/B 8.1/C | No description available
8.2/A 8.3/A 8.4/A 8.5/A 8.6/A 8.7/A 8.8/A 8.9/A 8.10/A 8.11/A 8.12/A 8.13/A
8.14/A 8.15/A 8.16/A 8.17/A 8.18/A 8.19/A 8.20/A 8.21/A 8.22/A 8.23/A 8.24/A
8.25/A 8.26/A 8.27/A 8.28/A 8.29/A 8.30/A 8.31/A 8.32/A 8.33/A 8.34/A 8.35/A
8.36/A 8.37/A 8.38/A 8.39/A 8.40/A 8.41/A 8.42/A 8.43/A 8.44/A 8.45/A 8.46/A
8.47/A 8.48/A 8.49/A 8.2/B 8.3/B 8.4/B 8.5/B 8.6/B 8.7/B 8.8/B 8.9/B 8.10/B
8.11/B 8.12/B 8.13/B 8.14/B 8.15/B 8.16/B 8.17/B 8.18/B 8.19/B 8.20/B 8.21/B
8.22/B 8.23/B 8.24/B 8.25/B 8.26/B 8.27/B 8.28/B 8.29/B 8.30/B 8.31/B 8.32/B
8.33/B 8.34/B 8.35/B 8.36/B 8.37/B 8.38/B 8.39/B 8.40/B 8.41/B 8.42/B 8.43/B
8.44/B 8.45/B 8.46/B 8.47/B 8.48/B 8.49/B | No description available
8.2/C 8.3/C 8.4/C 8.5/C 8.6/C 8.7/C 8.8/C 8.9/C 8.10/C 8.11/C 8.12/C 8.13/C
8.14/C 8.15/C 8.16/C 8.17/C 8.18/C 8.19/C 8.20/C 8.21/C 8.22/C 8.23/C 8.24/C
8.25/C 8.26/C 8.27/C 8.28/C 8.29/C 8.30/C 8.31/C 8.32/C 8.33/C 8.34/C 8.35/C
8.36/C 8.37/C 8.38/C 8.39/C 8.40/C 8.41/C 8.42/C 8.43/C 8.44/C 8.45/C 8.46/C
8.47/C 8.48/C 8.49/C | No description available
8.1/D 8.1/E 8.1/F | No description available
8.2/D 8.3/D 8.4/D 8.5/D 8.6/D 8.7/D 8.8/D 8.9/D 8.10/D 8.11/D 8.12/D 8.13/D
8.14/D 8.15/D 8.16/D 8.17/D 8.18/D 8.19/D 8.20/D 8.21/D 8.22/D 8.23/D 8.24/D
8.25/D 8.26/D 8.27/D 8.28/D 8.29/D 8.30/D 8.31/D 8.32/D 8.33/D 8.34/D 8.35/D
8.36/D 8.37/D 8.38/D 8.39/D 8.40/D 8.41/D 8.42/D 8.43/D 8.44/D 8.45/D 8.46/D
8.47/D 8.48/D 8.49/D 8.2/E 8.3/E 8.4/E 8.5/E 8.6/E 8.7/E 8.8/E 8.9/E 8.10/E
8.11/E 8.12/E 8.13/E 8.14/E 8.15/E 8.16/E 8.17/E 8.18/E 8.19/E 8.20/E 8.21/E
8.22/E 8.23/E 8.24/E 8.25/E 8.26/E 8.27/E 8.28/E 8.29/E 8.30/E 8.31/E 8.32/E
8.33/E 8.34/E 8.35/E 8.36/E 8.37/E 8.38/E 8.39/E 8.40/E 8.41/E 8.42/E 8.43/E
8.44/E 8.45/E 8.46/E 8.47/E 8.48/E 8.49/E 8.2/F 8.3/F 8.4/F 8.5/F 8.6/F 8.7/F
8.8/F 8.9/F 8.10/F 8.11/F 8.12/F 8.13/F 8.14/F 8.15/F 8.16/F 8.17/F 8.18/F
8.19/F 8.20/F 8.21/F 8.22/F 8.23/F 8.24/F 8.25/F 8.26/F 8.27/F 8.28/F 8.29/F
8.30/F 8.31/F 8.32/F 8.33/F 8.34/F 8.35/F 8.36/F 8.37/F 8.38/F 8.39/F 8.40/F
8.41/F 8.42/F 8.43/F 8.44/F 8.45/F 8.46/F 8.47/F 8.48/F 8.49/F | No
description available
8.1/N 8.2/N 8.3/N 8.4/N 8.5/N 8.6/N 8.7/N 8.8/N 8.9/N 8.10/N 8.11/N 8.12/N
8.13/N 8.14/N 8.15/N 8.16/N 8.17/N 8.18/N 8.19/N 8.20/N 8.21/N 8.22/N 8.23/N
8.24/N 8.25/N 8.26/N 8.27/N 8.28/N 8.29/N 8.30/N 8.31/N 8.32/N 8.33/N 8.34/N
8.35/N 8.36/N 8.37/N 8.38/N 8.39/N 8.40/N 8.41/N 8.42/N 8.43/N 8.44/N 8.45/N
8.46/N 8.47/N 8.48/N 8.49/N | No description available
> turn y 22.5 models #2
> turn y 45 models #3
> turn y 67.5 models #4
> turn y 90 models #5
> turn y 112.5 models #6
> turn y 135 models #7
> turn y 157.5 models #8
> view orient
> save C:/Users/26692/Desktop/DUF550/ChimeraX/tree_branches.pdb
> open C:\Users\26692\Desktop\DUF550\ChimeraX\tree_trunk.pdb format pdb
Chain information for tree_trunk.pdb #9
---
Chain | Description
A1 A2 A3 A4 A5 A6 A7 A8 A9 Aa Ab Ac Ad Ae Af Ag Ah Ai Aj Ak Al Am An Ao Ap Aq
Ar As At Au Av Aw Ax Ay Az | No description available
> turn z 180 models #9
> view matrix models #9,-1,-1.2246e-16,0,660.96,1.2246e-16,-1,0,568.01,0,0,1,0
> view matrix models #9,-1,-1.2246e-16,0,154.2,1.2246e-16,-1,0,194.51,0,0,1,0
> view matrix models #9,-1,-1.2246e-16,0,143.47,1.2246e-16,-1,0,152.36,0,0,1,0
> view orient
> view matrix models #9,-1,-1.2246e-16,0,146.2,1.2246e-16,-1,0,171.47,0,0,1,0
> view matrix models
> #9,-1,-1.2246e-16,0,138.77,1.2246e-16,-1,0,152.34,0,0,1,275.27
> view orient
> view matrix models
> #9,-1,-1.2246e-16,0,141.5,1.2246e-16,-1,0,161.9,0,0,1,275.27
> save "C:/Users/26692/Desktop/DUF550/ChimeraX/tree_branches and trunk.cxs"
> open C:\Users\26692\Desktop\DUF550\ChimeraX\tree_star_combined.pdb format
> pdb
Chain information for tree_star_combined.pdb #10
---
Chain | Description
I J K L M N | No description available
> ui mousemode right "move picked models"
> view matrix models #10,1,0,0,-15.018,0,1,0,393.21,0,0,1,0
> view matrix models #10,1,0,0,306.56,0,1,0,634.05,0,0,1,0
> select #10
3510 atoms, 3168 bonds, 774 residues, 1 model selected
> view matrix models #10,1,0,0,311.06,0,1,0,617.14,0,0,1,0.42021
> view matrix models #10,1,0,0,310.45,0,1,0,616.51,0,0,1,0.57292
> ui mousemode right rotate
> ui mousemode right select
Drag select of 40 atoms
> select add #10
3510 atoms, 3168 bonds, 774 residues, 1 model selected
> select subtract #10
Nothing selected
> help help:user/tools/modelpanel.html
> select add #10
3510 atoms, 3168 bonds, 774 residues, 1 model selected
> select clear
> ui mousemode right "translate selected models"
> ui mousemode right "move picked models"
> select #10
3510 atoms, 3168 bonds, 774 residues, 1 model selected
> view matrix models #10,1,0,0,336.59,0,1,0,610.21,0,0,1,3.8631
> view matrix models #10,1,0,0,351.71,0,1,0,598.59,0,0,1,9.6061
> view matrix models #10,1,0,0,292.05,0,1,0,630.59,0,0,1,104.26
> view matrix models #10,1,0,0,294.84,0,1,0,631.44,0,0,1,119.43
> view matrix models #10,1,0,0,295.29,0,1,0,629.49,0,0,1,119.51
> view matrix models #10,1,0,0,298.43,0,1,0,629.16,0,0,1,120.35
> view matrix models #10,1,0,0,298.55,0,1,0,629.98,0,0,1,122.91
> view matrix models #10,1,0,0,294.23,0,1,0,629.99,0,0,1,123.95
> view matrix models #10,1,0,0,293.95,0,1,0,628.49,0,0,1,124.06
> view matrix models #10,1,0,0,294.8,0,1,0,628.55,0,0,1,123.24
> view matrix models #10,1,0,0,294.84,0,1,0,628.37,0,0,1,123.18
> ui mousemode right "rotate selected models"
> view matrix models
> #10,0.96783,0.093837,-0.23344,297.33,-0.095694,0.99541,0.0033848,628.33,0.23269,0.019063,0.97236,123.47
> view matrix models
> #10,0.5948,-0.05854,0.80174,286.26,0.51402,0.79451,-0.32333,631.83,-0.61806,0.60442,0.50267,128.5
> view matrix models
> #10,-0.60929,-0.16714,0.77513,286.54,0.69886,0.34866,0.62452,621.69,-0.37463,0.92223,-0.095629,134.9
> view matrix models
> #10,-0.82609,0.12979,0.54839,288.97,0.48715,0.65369,0.57912,622.17,-0.28331,0.74555,-0.60323,140.33
> view matrix models
> #10,-0.87387,0.2851,0.39378,290.62,0.45169,0.77569,0.44078,623.65,-0.17979,0.56305,-0.80663,142.5
> view matrix models
> #10,-0.88947,0.3198,0.32645,291.34,0.43893,0.79669,0.41548,623.92,-0.12721,0.51284,-0.849,142.95
> view matrix models
> #10,-0.83023,0.39918,0.38906,290.67,0.49833,0.84427,0.19717,626.26,-0.24977,0.35758,-0.89986,143.5
> view matrix models
> #10,-0.88428,0.35622,0.30194,291.61,0.43501,0.86347,0.2553,625.64,-0.16977,0.35711,-0.91851,143.7
> view matrix models
> #10,-0.83347,0.29814,0.46523,289.86,0.46583,0.83197,0.30139,625.14,-0.2972,0.46792,-0.8323,142.78
> view matrix models
> #10,-0.90784,0.32076,0.27007,291.95,0.40147,0.85081,0.33904,624.74,-0.12103,0.41622,-0.90117,143.51
> view matrix models
> #10,-0.88666,0.33682,0.31683,291.45,0.42233,0.86889,0.25821,625.6,-0.18832,0.36275,-0.91266,143.64
> view matrix models
> #10,-0.80542,0.2701,0.52758,289.19,0.49647,0.79366,0.3516,624.61,-0.32375,0.54511,-0.77333,142.15
> view matrix models
> #10,-0.71042,0.16149,0.685,287.51,0.56844,0.70552,0.42321,623.84,-0.41494,0.69004,-0.59301,140.22
> view matrix models
> #10,-0.68915,0.28225,0.66738,287.7,0.50601,0.8467,0.16444,626.61,-0.51867,0.45103,-0.72633,141.64
> view matrix models
> #10,-0.73141,0.32739,0.59821,288.44,0.45702,0.8864,0.073666,627.58,-0.50614,0.32728,-0.79794,142.41
> view matrix models
> #10,-0.80475,0.30366,0.51007,289.38,0.41417,0.90278,0.116,627.13,-0.42526,0.30461,-0.85227,142.99
> view matrix models
> #10,-0.6402,0.07306,0.76472,286.66,0.64383,0.59408,0.48224,623.21,-0.41908,0.80108,-0.42737,138.44
> view matrix models
> #10,-0.63241,0.18797,0.75148,286.8,0.58194,0.75557,0.30075,625.15,-0.51127,0.62752,-0.58722,140.15
> view matrix models
> #10,-0.88256,0.2349,0.40733,290.48,0.43251,0.74542,0.50724,622.94,-0.18448,0.62384,-0.75947,142
> view matrix models
> #10,-0.82094,0.37322,0.43217,290.21,0.56223,0.66059,0.49752,623.04,-0.099803,0.65141,-0.75213,141.92
> ui mousemode right "move picked models"
> view matrix models
> #10,-0.82094,0.37322,0.43217,297.09,0.56223,0.66059,0.49752,624.72,-0.099803,0.65141,-0.75213,145.83
> ui mousemode right "rotate selected models"
> view matrix models
> #10,-0.87893,0.33241,0.34202,298.05,0.46156,0.77351,0.43434,625.39,-0.12018,0.53962,-0.83329,146.7
> view matrix models
> #10,-0.97376,0.22595,-0.027275,302,0.22558,0.97409,0.01619,629.87,0.030226,0.0096122,-0.9995,148.48
> view matrix models
> #10,-0.98007,0.18609,-0.069558,302.46,0.18853,0.9816,-0.030349,630.36,0.06263,-0.042858,-0.99712,148.45
> view matrix models
> #10,-0.83921,0.025465,0.54321,295.9,0.17343,0.95928,0.22296,627.65,-0.51542,0.28132,-0.80945,146.45
> view matrix models
> #10,-0.83836,0.020281,0.54473,295.89,0.16863,0.95994,0.22379,627.64,-0.51837,0.27948,-0.8082,146.43
> view matrix models
> #10,-0.7847,0.17924,0.5934,295.37,0.37842,0.89671,0.22956,627.58,-0.49097,0.40469,-0.77148,146.04
> view matrix models
> #10,-0.7729,0.10885,0.62512,295.03,0.3312,0.90953,0.25112,627.35,-0.54123,0.40113,-0.73903,145.69
> view matrix models
> #10,-0.76678,0.28405,0.57563,295.56,0.5591,0.7361,0.38153,625.96,-0.31535,0.61439,-0.72324,145.53
> view matrix models
> #10,-0.73829,0.33383,0.58607,295.44,0.60446,0.713,0.35532,626.24,-0.29925,0.61659,-0.72819,145.58
> view matrix models
> #10,-0.77751,0.27116,0.56741,295.64,0.53145,0.76569,0.36232,626.16,-0.33621,0.58325,-0.73944,145.7
> view matrix models
> #10,-0.81204,0.24271,0.53074,296.04,0.47105,0.80946,0.35055,626.29,-0.34453,0.53467,-0.77164,146.04
> view matrix models
> #10,-0.82806,0.21215,0.51895,296.16,0.42912,0.83553,0.34314,626.37,-0.3608,0.50683,-0.78291,146.16
> view matrix models
> #10,-0.83423,0.19104,0.51727,296.18,0.40832,0.84446,0.34663,626.33,-0.37059,0.50038,-0.78248,146.16
> view matrix models
> #10,-0.82796,0.11736,0.54837,295.85,0.46783,0.68374,0.56003,624.05,-0.30921,0.72023,-0.62101,144.43
> ui mousemode right "move picked models"
> view matrix models
> #10,-0.82796,0.11736,0.54837,289.43,0.46783,0.68374,0.56003,624.44,-0.30921,0.72023,-0.62101,138.49
> view matrix models
> #10,-0.82796,0.11736,0.54837,284.24,0.46783,0.68374,0.56003,619.77,-0.30921,0.72023,-0.62101,145.19
> ui mousemode right "rotate selected models"
> view matrix models
> #10,-0.34571,-0.26603,0.89984,280.48,0.63574,0.63892,0.43314,621.12,-0.69016,0.72181,-0.051762,139.1
> view matrix models
> #10,0.021213,-0.3316,0.94318,280.02,0.81612,0.55067,0.17525,623.88,-0.57749,0.76603,0.28231,135.52
> ui mousemode right "move picked models"
> view matrix models
> #10,0.021213,-0.3316,0.94318,290.15,0.81612,0.55067,0.17525,626.81,-0.57749,0.76603,0.28231,139.98
> view matrix models
> #10,0.021213,-0.3316,0.94318,290.92,0.81612,0.55067,0.17525,626.77,-0.57749,0.76603,0.28231,136.55
> ui mousemode right "rotate selected models"
> view matrix models
> #10,0.11947,-0.1979,0.97291,290.61,0.81793,0.57508,0.016537,628.47,-0.56277,0.7938,0.23058,137.1
> view matrix models
> #10,-0.091204,-0.39242,0.91525,291.22,0.77658,0.54731,0.31205,625.31,-0.62338,0.73923,0.25483,136.84
> view matrix models
> #10,0.0054299,-0.38397,0.92333,291.14,0.80054,0.555,0.22609,626.23,-0.59926,0.73793,0.31039,136.25
> view matrix models
> #10,0.022892,-0.10017,0.99471,290.37,0.90879,0.41671,0.021049,628.42,-0.41662,0.9035,0.10057,138.49
> ui mousemode right "move picked models"
> view matrix models
> #10,0.022892,-0.10017,0.99471,289.39,0.90879,0.41671,0.021049,627.23,-0.41662,0.9035,0.10057,144.25
> ui mousemode right "rotate selected models"
> view matrix models
> #10,0.63363,0.77011,-0.073771,300.82,-0.071727,-0.036467,-0.99676,638.11,-0.77031,0.63687,0.032131,144.98
> view matrix models
> #10,0.018967,-0.1808,0.98334,289.51,0.76911,0.63105,0.10119,626.37,-0.63883,0.75438,0.15103,143.71
> view matrix models
> #10,0.15734,-0.40436,0.90096,290.4,0.83507,0.54149,0.09719,626.41,-0.52716,0.73708,0.42287,140.8
> ui mousemode right "move picked models"
> view matrix models
> #10,0.15734,-0.40436,0.90096,291.98,0.83507,0.54149,0.09719,626.83,-0.52716,0.73708,0.42287,133.22
> view orient
> ui mousemode right "rotate selected models"
> view matrix models
> #10,0.53941,-0.84204,-0.0028863,301.65,0.83574,0.53495,0.12398,626.54,-0.10285,-0.069286,0.99228,127.13
> view matrix models
> #10,0.54465,-0.83756,-0.042986,302.08,0.83785,0.54114,0.071946,627.1,-0.036997,-0.075201,0.99648,127.09
> ui mousemode right "move picked models"
> view matrix models
> #10,0.54465,-0.83756,-0.042986,296.6,0.83785,0.54114,0.071946,627.88,-0.036997,-0.075201,0.99648,127.09
> ui mousemode right "rotate selected models"
> view matrix models
> #10,0.53905,-0.84201,-0.021047,296.37,0.84053,0.53616,0.077775,627.82,-0.054203,-0.059616,0.99675,127.09
> view matrix models
> #10,0.53152,-0.84677,-0.021611,296.37,0.84702,0.53116,0.020364,628.43,-0.0057642,-0.029129,0.99956,127.06
> view matrix models
> #10,0.53846,-0.84022,0.063947,295.46,0.82668,0.54144,0.15309,627.02,-0.16325,-0.02957,0.98614,127.2
> view matrix models
> #10,0.55528,-0.82974,-0.056532,296.75,0.82606,0.54239,0.1531,627.02,-0.096374,-0.13171,0.98659,127.2
> view matrix models
> #10,0.56262,-0.80239,-0.19907,298.27,0.82638,0.55269,0.10779,627.5,0.023533,-0.22515,0.97404,127.33
> ui mousemode right "move picked models"
> view orient
> view matrix models
> #10,0.56262,-0.80239,-0.19907,297.96,0.82638,0.55269,0.10779,623.08,0.023533,-0.22515,0.97404,118.08
> ui mousemode right "translate selected atoms"
> ui mousemode right "rotate selected models"
> view matrix models
> #10,0.5794,-0.79199,-0.19245,297.89,0.81355,0.54771,0.19531,622.14,-0.049278,-0.26973,0.96167,118.21
> view matrix models
> #10,0.55302,-0.78191,-0.28773,298.91,0.83312,0.52242,0.18162,622.29,0.0083017,-0.34016,0.94033,118.44
> view matrix models
> #10,0.6338,-0.77105,-0.061464,296.49,0.76305,0.61025,0.21296,621.95,-0.12669,-0.18187,0.97513,118.07
> view matrix models
> #10,0.71029,-0.69992,-0.074803,296.63,0.69661,0.68368,0.21752,621.9,-0.10111,-0.20661,0.97318,118.09
> view matrix models
> #10,0.6839,-0.70891,-0.1724,297.67,0.72871,0.65226,0.20865,622,-0.035468,-0.26832,0.96268,118.2
> view matrix models
> #10,0.72816,-0.68478,0.029175,295.52,0.66148,0.71325,0.23178,621.75,-0.17953,-0.14948,0.97233,118.1
> view matrix models
> #10,0.80117,-0.59703,-0.04108,296.27,0.59083,0.7782,0.21292,621.95,-0.095151,-0.19485,0.97621,118.06
> ui mousemode right "move picked models"
> view matrix models
> #10,0.80117,-0.59703,-0.04108,302.82,0.59083,0.7782,0.21292,619.17,-0.095151,-0.19485,0.97621,122.17
> view matrix models
> #10,0.80117,-0.59703,-0.04108,307.32,0.59083,0.7782,0.21292,618.94,-0.095151,-0.19485,0.97621,120.16
> view matrix models
> #10,0.80117,-0.59703,-0.04108,310.67,0.59083,0.7782,0.21292,620.67,-0.095151,-0.19485,0.97621,120.73
> ui mousemode right "rotate selected models"
> view matrix models
> #10,0.7696,-0.6019,-0.21315,312.51,0.61773,0.78633,0.009933,622.84,0.16163,-0.13932,0.97697,120.72
> view orient
> view matrix models
> #10,0.96265,-0.23029,-0.14235,311.75,-0.26581,-0.9038,-0.33541,626.53,-0.051413,0.36072,-0.93126,141.13
> view matrix models
> #10,0.88104,-0.36166,-0.30491,313.49,0.36625,0.11359,0.92356,613.07,-0.29938,-0.92537,0.23253,128.68
> undo
[Repeated 1 time(s)]
> ui mousemode right "move picked models"
> view matrix models
> #10,0.7696,-0.6019,-0.21315,310.43,0.61773,0.78633,0.009933,624.51,0.16163,-0.13932,0.97697,120.72
> view orient
> save "C:/Users/26692/Desktop/DUF550/ChimeraX/tree_branches trunk star.cxs"
> hide #9 models
> hide #10 models
> open 2zrq
Summary of feedback from opening 2zrq fetched from pdb
---
note | Fetching compressed mmCIF 2zrq from
http://files.rcsb.org/download/2zrq.cif
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #11
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #11
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #12
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #12
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #13
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #13
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #14
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #14
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #15
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #15
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #16
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #16
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #17
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #17
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #18
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #18
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #19
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #19
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #20
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #20
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #21
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #21
---
CA — calcium ion
> color #11-21 red
> open 5cvq
Summary of feedback from opening 5cvq fetched from pdb
---
notes | Fetching compressed mmCIF 5cvq from
http://files.rcsb.org/download/5cvq.cif
Fetching CCD CD from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/D/CD/CD.cif
Fetching CCD ACT from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/T/ACT/ACT.cif
Fetching CCD BB2 from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/2/BB2/BB2.cif
5cvq title:
Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryzae,
in complex with actinonin [more info...]
Chain information for 5cvq #22
---
Chain | Description | UniProt
A | Peptide deformylase | Q5H3Z2_XANOR 1-171
Non-standard residues in 5cvq #22
---
ACT — acetate ion
BB2 — actinonin (2-[(formyl-hydroxy-amino)-methyl]-heptanoic acid
[1-(2-hydroxymethyl-pyrrolidine-1-carbonyl)-2-methyl-propyl]-amide)
CD — cadmium ion
5cvq mmCIF Assemblies
---
1| author_and_software_defined_assembly
> open 5cvq
5cvq title:
Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryzae,
in complex with actinonin [more info...]
Chain information for 5cvq #23
---
Chain | Description | UniProt
A | Peptide deformylase | Q5H3Z2_XANOR 1-171
Non-standard residues in 5cvq #23
---
ACT — acetate ion
BB2 — actinonin (2-[(formyl-hydroxy-amino)-methyl]-heptanoic acid
[1-(2-hydroxymethyl-pyrrolidine-1-carbonyl)-2-methyl-propyl]-amide)
CD — cadmium ion
5cvq mmCIF Assemblies
---
1| author_and_software_defined_assembly
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #24
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #24
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #25
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #25
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #26
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #26
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #27
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #27
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #28
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #28
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #29
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #29
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #30
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #30
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #31
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #31
---
CA — calcium ion
> open 2zrq
2zrq title:
Crystal structure of S324A-subtilisin [more info...]
Chain information for 2zrq #32
---
Chain | Description | UniProt
A | Tk-subtilisin | TKSU_PYRKO 70-398
Non-standard residues in 2zrq #32
---
CA — calcium ion
> color #22-32 blue
> open 1bh6
Summary of feedback from opening 1bh6 fetched from pdb
---
notes | Fetching compressed mmCIF 1bh6 from
http://files.rcsb.org/download/1bh6.cif
Fetching CCD NA from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/A/NA/NA.cif
Fetching CCD 1BH from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/H/1BH/1BH.cif
1bh6 title:
Subtilisin Dy In complex with the synthetic inhibitor N-benzyloxycarbonyl-ala-
pro-phe-chloromethyl ketone [more info...]
Chain information for 1bh6 #33
---
Chain | Description | UniProt
A | SUBTILISIN DY | SUBD_BACLI 1-275
Non-standard residues in 1bh6 #33
---
1BH — N-benzyloxycarbonyl-ala-pro-3-amino-4-phenyl-butan-2-ol
CA — calcium ion
NA — sodium ion
> open 1bh6
1bh6 title:
Subtilisin Dy In complex with the synthetic inhibitor N-benzyloxycarbonyl-ala-
pro-phe-chloromethyl ketone [more info...]
Chain information for 1bh6 #34
---
Chain | Description | UniProt
A | SUBTILISIN DY | SUBD_BACLI 1-275
Non-standard residues in 1bh6 #34
---
1BH — N-benzyloxycarbonyl-ala-pro-3-amino-4-phenyl-butan-2-ol
CA — calcium ion
NA — sodium ion
> open 1bh6
1bh6 title:
Subtilisin Dy In complex with the synthetic inhibitor N-benzyloxycarbonyl-ala-
pro-phe-chloromethyl ketone [more info...]
Chain information for 1bh6 #35
---
Chain | Description | UniProt
A | SUBTILISIN DY | SUBD_BACLI 1-275
Non-standard residues in 1bh6 #35
---
1BH — N-benzyloxycarbonyl-ala-pro-3-amino-4-phenyl-butan-2-ol
CA — calcium ion
NA — sodium ion
> open 1bh6
1bh6 title:
Subtilisin Dy In complex with the synthetic inhibitor N-benzyloxycarbonyl-ala-
pro-phe-chloromethyl ketone [more info...]
Chain information for 1bh6 #36
---
Chain | Description | UniProt
A | SUBTILISIN DY | SUBD_BACLI 1-275
Non-standard residues in 1bh6 #36
---
1BH — N-benzyloxycarbonyl-ala-pro-3-amino-4-phenyl-butan-2-ol
CA — calcium ion
NA — sodium ion
> open 1bh6
1bh6 title:
Subtilisin Dy In complex with the synthetic inhibitor N-benzyloxycarbonyl-ala-
pro-phe-chloromethyl ketone [more info...]
Chain information for 1bh6 #37
---
Chain | Description | UniProt
A | SUBTILISIN DY | SUBD_BACLI 1-275
Non-standard residues in 1bh6 #37
---
1BH — N-benzyloxycarbonyl-ala-pro-3-amino-4-phenyl-butan-2-ol
CA — calcium ion
NA — sodium ion
> open 1bh6
1bh6 title:
Subtilisin Dy In complex with the synthetic inhibitor N-benzyloxycarbonyl-ala-
pro-phe-chloromethyl ketone [more info...]
Chain information for 1bh6 #38
---
Chain | Description | UniProt
A | SUBTILISIN DY | SUBD_BACLI 1-275
Non-standard residues in 1bh6 #38
---
1BH — N-benzyloxycarbonyl-ala-pro-3-amino-4-phenyl-butan-2-ol
CA — calcium ion
NA — sodium ion
> open 1bh6
1bh6 title:
Subtilisin Dy In complex with the synthetic inhibitor N-benzyloxycarbonyl-ala-
pro-phe-chloromethyl ketone [more info...]
Chain information for 1bh6 #39
---
Chain | Description | UniProt
A | SUBTILISIN DY | SUBD_BACLI 1-275
Non-standard residues in 1bh6 #39
---
1BH — N-benzyloxycarbonyl-ala-pro-3-amino-4-phenyl-butan-2-ol
CA — calcium ion
NA — sodium ion
> open 1bh6
1bh6 title:
Subtilisin Dy In complex with the synthetic inhibitor N-benzyloxycarbonyl-ala-
pro-phe-chloromethyl ketone [more info...]
Chain information for 1bh6 #40
---
Chain | Description | UniProt
A | SUBTILISIN DY | SUBD_BACLI 1-275
Non-standard residues in 1bh6 #40
---
1BH — N-benzyloxycarbonyl-ala-pro-3-amino-4-phenyl-butan-2-ol
CA — calcium ion
NA — sodium ion
> open 1bh6
Traceback (most recent call last):
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute
cmd.run(cmd_text)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 119, in cmd_open
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 154, in provider_open
models, status = collated_open(session, database_name, ident,
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 464, in collated_open
return remember_data_format()
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 435, in remember_data_format
models, status = func(*func_args, **func_kw)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\mmcif\\__init__.py", line 97, in fetch
return fetcher(session, ident, ignore_cache=ignore_cache, **kw)
File "src\mmcif.pyx", line 418, in chimerax.mmcif.mmcif.fetch_mmcif
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\manager.py", line 198, in open_data
return provider_open(self.session, [path], _return_status=True,
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 194, in provider_open
models, status = collated_open(session, None, [data], data_format,
_add_models,
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 465, in collated_open
return remember_data_format()
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 435, in remember_data_format
models, status = func(*func_args, **func_kw)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\mmcif\\__init__.py", line 43, in open
return mmcif.open_mmcif(session, data, file_name, **kw)
File "src\mmcif.pyx", line 88, in chimerax.mmcif.mmcif.open_mmcif
MemoryError: not enough memory
MemoryError: not enough memory
File "src\mmcif.pyx", line 88, in chimerax.mmcif.mmcif.open_mmcif
See log for complete Python traceback.
> open 1bh6
Traceback (most recent call last):
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute
cmd.run(cmd_text)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 119, in cmd_open
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 154, in provider_open
models, status = collated_open(session, database_name, ident,
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 464, in collated_open
return remember_data_format()
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 435, in remember_data_format
models, status = func(*func_args, **func_kw)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\mmcif\\__init__.py", line 97, in fetch
return fetcher(session, ident, ignore_cache=ignore_cache, **kw)
File "src\mmcif.pyx", line 418, in chimerax.mmcif.mmcif.fetch_mmcif
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\manager.py", line 198, in open_data
return provider_open(self.session, [path], _return_status=True,
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 194, in provider_open
models, status = collated_open(session, None, [data], data_format,
_add_models,
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 465, in collated_open
return remember_data_format()
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 435, in remember_data_format
models, status = func(*func_args, **func_kw)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\mmcif\\__init__.py", line 43, in open
return mmcif.open_mmcif(session, data, file_name, **kw)
File "src\mmcif.pyx", line 88, in chimerax.mmcif.mmcif.open_mmcif
MemoryError: not enough memory
MemoryError: not enough memory
File "src\mmcif.pyx", line 88, in chimerax.mmcif.mmcif.open_mmcif
See log for complete Python traceback.
> open 1bh6
Traceback (most recent call last):
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute
cmd.run(cmd_text)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 119, in cmd_open
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 154, in provider_open
models, status = collated_open(session, database_name, ident,
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 464, in collated_open
return remember_data_format()
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 435, in remember_data_format
models, status = func(*func_args, **func_kw)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\mmcif\\__init__.py", line 97, in fetch
return fetcher(session, ident, ignore_cache=ignore_cache, **kw)
File "src\mmcif.pyx", line 418, in chimerax.mmcif.mmcif.fetch_mmcif
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\manager.py", line 198, in open_data
return provider_open(self.session, [path], _return_status=True,
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 194, in provider_open
models, status = collated_open(session, None, [data], data_format,
_add_models,
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 465, in collated_open
return remember_data_format()
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 435, in remember_data_format
models, status = func(*func_args, **func_kw)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\mmcif\\__init__.py", line 43, in open
return mmcif.open_mmcif(session, data, file_name, **kw)
File "src\mmcif.pyx", line 88, in chimerax.mmcif.mmcif.open_mmcif
MemoryError: not enough memory
MemoryError: not enough memory
File "src\mmcif.pyx", line 88, in chimerax.mmcif.mmcif.open_mmcif
See log for complete Python traceback.
> open 1bh6
Traceback (most recent call last):
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute
cmd.run(cmd_text)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 119, in cmd_open
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 154, in provider_open
models, status = collated_open(session, database_name, ident,
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 464, in collated_open
return remember_data_format()
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 435, in remember_data_format
models, status = func(*func_args, **func_kw)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\mmcif\\__init__.py", line 97, in fetch
return fetcher(session, ident, ignore_cache=ignore_cache, **kw)
File "src\mmcif.pyx", line 418, in chimerax.mmcif.mmcif.fetch_mmcif
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\manager.py", line 198, in open_data
return provider_open(self.session, [path], _return_status=True,
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 194, in provider_open
models, status = collated_open(session, None, [data], data_format,
_add_models,
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 465, in collated_open
return remember_data_format()
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 435, in remember_data_format
models, status = func(*func_args, **func_kw)
File "D:\3_Shanghaitech\软件\ChimeraX\bin\lib\site-
packages\chimerax\mmcif\\__init__.py", line 43, in open
return mmcif.open_mmcif(session, data, file_name, **kw)
File "src\mmcif.pyx", line 88, in chimerax.mmcif.mmcif.open_mmcif
MemoryError: not enough memory
MemoryError: not enough memory
File "src\mmcif.pyx", line 88, in chimerax.mmcif.mmcif.open_mmcif
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 528.92
OpenGL renderer: NVIDIA GeForce MX250/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.9.11
Locale: zh_CN.cp936
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: windows
Manufacturer: HP
Model: HP Pavilion Laptop 14-ce3xxx
OS: Microsoft Windows 10 家庭中文版 (Build 19045)
Memory: 8,361,132,032
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i5-1035G1 CPU @ 1.00GHz
OSLanguage: zh-CN
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2023.5.7
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
comtypes: 1.1.14
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 23.1
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pywin32: 305
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
WMI: 1.5.1
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → Input/Output |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → MemoryError opening mmCIF |
comment:2 by , 2 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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May not _actually_ be a duplicate -- for some reason this user opened the same structure over and over without closing previous ones.