ArtiaX: slider: float division by zero

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> "/Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref
> copy.star" format star

Summary of feedback from opening
/Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref
copy.star  
---  
notes | Using preset: ArtiaX / Artiax Default  
Preset expands to these ChimeraX commands:

    
    
    set bgColor black  
    lighting depthCue false  
    camera ortho

  
15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Opened Particle list YTC009_3_lam7_ts2_corrected_80S_ref copy.star with 2287
particles.  
set axis size 15.47692  
15.47692  
['.arrow', '0', '0', '0', '15.47692', '0', '0', '1.0317946666666666',
'4.1271786666666666']  
set axis size 14.01245  
14.01245  
['.arrow', '0', '0', '0', '14.01245', '0', '0', '0.9341633333333333',
'3.7366533333333334']  
set axis size 14.74469  
14.74469  
['.arrow', '0', '0', '0', '14.74469', '0', '0', '0.9829793333333333',
'3.9319173333333333']  
set axis size 16.20916  
16.20916  
['.arrow', '0', '0', '0', '16.20916', '0', '0', '1.0806106666666666',
'4.322442666666666']  
set axis size 18.40586  
18.40586  
['.arrow', '0', '0', '0', '18.40586', '0', '0', '1.2270573333333334',
'4.908229333333334']  
set axis size 21.3348  
21.3348  
['.arrow', '0', '0', '0', '21.3348', '0', '0', '1.42232', '5.68928']  
set axis size 23.5315  
23.5315  
['.arrow', '0', '0', '0', '23.5315', '0', '0', '1.5687666666666666',
'6.275066666666667']  
set axis size 26.46044  
26.46044  
['.arrow', '0', '0', '0', '26.46044', '0', '0', '1.7640293333333332',
'7.056117333333333']  
set axis size 28.65714  
28.65714  
['.arrow', '0', '0', '0', '28.65714', '0', '0', '1.9104759999999998',
'7.641903999999999']  
set axis size 30.85385  
30.85385  
['.arrow', '0', '0', '0', '30.85385', '0', '0', '2.056923333333333',
'8.227693333333333']  
set axis size 32.31832  
32.31832  
['.arrow', '0', '0', '0', '32.31832', '0', '0', '2.154554666666667',
'8.618218666666667']  
set axis size 34.51502  
34.51502  
['.arrow', '0', '0', '0', '34.51502', '0', '0', '2.3010013333333332',
'9.204005333333333']  
set axis size 35.97949  
35.97949  
['.arrow', '0', '0', '0', '35.97949', '0', '0', '2.3986326666666664',
'9.594530666666666']  
set axis size 37.44396  
37.44396  
['.arrow', '0', '0', '0', '37.44396', '0', '0', '2.4962639999999996',
'9.985055999999998']  
set axis size 38.90842  
38.90842  
['.arrow', '0', '0', '0', '38.90842', '0', '0', '2.5938946666666665',
'10.375578666666666']  
set axis size 39.64066  
39.64066  
['.arrow', '0', '0', '0', '39.64066', '0', '0', '2.6427106666666664',
'10.570842666666666']  
set axis size 41.10513  
41.10513  
['.arrow', '0', '0', '0', '41.10513', '0', '0', '2.740342', '10.961368']  
set axis size 41.83736  
41.83736  
['.arrow', '0', '0', '0', '41.83736', '0', '0', '2.7891573333333333',
'11.156629333333333']  
set axis size 42.5696  
42.5696  
['.arrow', '0', '0', '0', '42.5696', '0', '0', '2.8379733333333332',
'11.351893333333333']  
set axis size 43.30183  
43.30183  
['.arrow', '0', '0', '0', '43.30183', '0', '0', '2.886788666666667',
'11.547154666666668']  
set axis size 44.03407  
44.03407  
['.arrow', '0', '0', '0', '44.03407', '0', '0', '2.935604666666667',
'11.742418666666667']  
set axis size 44.7663  
44.7663  
['.arrow', '0', '0', '0', '44.7663', '0', '0', '2.98442', '11.93768']  
set axis size 45.49853  
45.49853  
['.arrow', '0', '0', '0', '45.49853', '0', '0', '3.0332353333333333',
'12.132941333333333']  
set axis size 46.23077  
46.23077  
['.arrow', '0', '0', '0', '46.23077', '0', '0', '3.0820513333333333',
'12.328205333333333']  
set axis size 46.963  
46.963  
['.arrow', '0', '0', '0', '46.963', '0', '0', '3.130866666666667',
'12.523466666666668']  
set axis size 47.69524  
47.69524  
['.arrow', '0', '0', '0', '47.69524', '0', '0', '3.1796826666666664',
'12.718730666666666']  
set axis size 48.42747  
48.42747  
['.arrow', '0', '0', '0', '48.42747', '0', '0', '3.228498', '12.913992']  
set axis size 49.15971  
49.15971  
['.arrow', '0', '0', '0', '49.15971', '0', '0', '3.2773139999999996',
'13.109255999999998']  
set axis size 49.89194  
49.89194  
['.arrow', '0', '0', '0', '49.89194', '0', '0', '3.3261293333333333',
'13.304517333333333']  
set axis size 49.15971  
49.15971  
['.arrow', '0', '0', '0', '49.15971', '0', '0', '3.2773139999999996',
'13.109255999999998']  
set axis size 47.69524  
47.69524  
['.arrow', '0', '0', '0', '47.69524', '0', '0', '3.1796826666666664',
'12.718730666666666']  
set axis size 44.7663  
44.7663  
['.arrow', '0', '0', '0', '44.7663', '0', '0', '2.98442', '11.93768']  
set axis size 42.5696  
42.5696  
['.arrow', '0', '0', '0', '42.5696', '0', '0', '2.8379733333333332',
'11.351893333333333']  
set axis size 39.64066  
39.64066  
['.arrow', '0', '0', '0', '39.64066', '0', '0', '2.6427106666666664',
'10.570842666666666']  
set axis size 36.71172  
36.71172  
['.arrow', '0', '0', '0', '36.71172', '0', '0', '2.447448', '9.789792']  
set axis size 33.78278  
33.78278  
['.arrow', '0', '0', '0', '33.78278', '0', '0', '2.2521853333333337',
'9.008741333333335']  
set axis size 30.85385  
30.85385  
['.arrow', '0', '0', '0', '30.85385', '0', '0', '2.056923333333333',
'8.227693333333333']  
set axis size 27.92491  
27.92491  
['.arrow', '0', '0', '0', '27.92491', '0', '0', '1.8616606666666666',
'7.4466426666666665']  
set axis size 24.26374  
24.26374  
['.arrow', '0', '0', '0', '24.26374', '0', '0', '1.6175826666666666',
'6.4703306666666665']  
set axis size 22.06703  
22.06703  
['.arrow', '0', '0', '0', '22.06703', '0', '0', '1.4711353333333332',
'5.884541333333333']  
set axis size 18.40586  
18.40586  
['.arrow', '0', '0', '0', '18.40586', '0', '0', '1.2270573333333334',
'4.908229333333334']  
set axis size 15.47692  
15.47692  
['.arrow', '0', '0', '0', '15.47692', '0', '0', '1.0317946666666666',
'4.1271786666666666']  
set axis size 13.28022  
13.28022  
['.arrow', '0', '0', '0', '13.28022', '0', '0', '0.885348', '3.541392']  
set axis size 11.08352  
11.08352  
['.arrow', '0', '0', '0', '11.08352', '0', '0', '0.7389013333333333',
'2.955605333333333']  
set axis size 8.88681  
8.88681  
['.arrow', '0', '0', '0', '8.88681', '0', '0', '0.592454', '2.369816']  
set axis size 8.15458  
8.15458  
['.arrow', '0', '0', '0', '8.15458', '0', '0', '0.5436386666666666',
'2.1745546666666664']  
set axis size 7.42234  
7.42234  
['.arrow', '0', '0', '0', '7.42234', '0', '0', '0.4948226666666667',
'1.9792906666666668']  
set axis size 6.69011  
6.69011  
['.arrow', '0', '0', '0', '6.69011', '0', '0', '0.4460073333333333',
'1.7840293333333332']  
set axis size 5.95788  
5.95788  
['.arrow', '0', '0', '0', '5.95788', '0', '0', '0.39719200000000005',
'1.5887680000000002']  
set axis size 5.22564  
5.22564  
['.arrow', '0', '0', '0', '5.22564', '0', '0', '0.348376', '1.393504']  
set axis size 4.49341  
4.49341  
['.arrow', '0', '0', '0', '4.49341', '0', '0', '0.29956066666666664',
'1.1982426666666666']  
set axis size 3.76117  
3.76117  
['.arrow', '0', '0', '0', '3.76117', '0', '0', '0.25074466666666667',
'1.0029786666666667']  
set axis size 3.02894  
3.02894  
['.arrow', '0', '0', '0', '3.02894', '0', '0', '0.20192933333333332',
'0.8077173333333333']  
set axis size 2.2967  
2.2967  
['.arrow', '0', '0', '0', '2.2967', '0', '0', '0.15311333333333332',
'0.6124533333333333']  
set axis size 1.56447  
1.56447  
['.arrow', '0', '0', '0', '1.56447', '0', '0', '0.104298', '0.417192']  
set axis size 0.83223  
0.83223  
['.arrow', '0', '0', '0', '0.83223', '0', '0', '0.055482000000000004',
'0.22192800000000001']  
set axis size 0.1  
0.1  
['.arrow', '0', '0', '0', '0.1', '0', '0', '0.006666666666666667',
'0.02666666666666667']  
set axis size 0.83223  
0.83223  
['.arrow', '0', '0', '0', '0.83223', '0', '0', '0.055482000000000004',
'0.22192800000000001']  
set axis size 1.56447  
1.56447  
['.arrow', '0', '0', '0', '1.56447', '0', '0', '0.104298', '0.417192']  
set axis size 3.02894  
3.02894  
['.arrow', '0', '0', '0', '3.02894', '0', '0', '0.20192933333333332',
'0.8077173333333333']  
set axis size 3.76117  
3.76117  
['.arrow', '0', '0', '0', '3.76117', '0', '0', '0.25074466666666667',
'1.0029786666666667']  
set axis size 4.49341  
4.49341  
['.arrow', '0', '0', '0', '4.49341', '0', '0', '0.29956066666666664',
'1.1982426666666666']  
set axis size 5.95788  
5.95788  
['.arrow', '0', '0', '0', '5.95788', '0', '0', '0.39719200000000005',
'1.5887680000000002']  
set axis size 6.69011  
6.69011  
['.arrow', '0', '0', '0', '6.69011', '0', '0', '0.4460073333333333',
'1.7840293333333332']  
set axis size 7.42234  
7.42234  
['.arrow', '0', '0', '0', '7.42234', '0', '0', '0.4948226666666667',
'1.9792906666666668']  
set axis size 8.15458  
8.15458  
['.arrow', '0', '0', '0', '8.15458', '0', '0', '0.5436386666666666',
'2.1745546666666664']  
set axis size 8.88681  
8.88681  
['.arrow', '0', '0', '0', '8.88681', '0', '0', '0.592454', '2.369816']  
set axis size 9.61905  
9.61905  
['.arrow', '0', '0', '0', '9.61905', '0', '0', '0.64127', '2.56508']  
set axis size 10.35128  
10.35128  
['.arrow', '0', '0', '0', '10.35128', '0', '0', '0.6900853333333333',
'2.7603413333333333']  
set axis size 11.08352  
11.08352  
['.arrow', '0', '0', '0', '11.08352', '0', '0', '0.7389013333333333',
'2.955605333333333']  
set axis size 11.81575  
11.81575  
['.arrow', '0', '0', '0', '11.81575', '0', '0', '0.7877166666666666',
'3.1508666666666665']  
set axis size 11.81575  
11.81575  
['.arrow', '0', '0', '0', '11.81575', '0', '0', '0.7877166666666666',
'3.1508666666666665']  

> artiax particles #1.2.1 axesSize 11.81575

> artiax particles #1.2.1 radius 2.2967

Opened YTC009_3_lam7_ts2_corrected.mrc as #1.1.1, grid size 682,960,234, pixel
15.8,15.8,15.8, shown at level 0.241, step 1, values float32  

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

> artiax tomo #1.1.1 pixelSize 15.828000423845308

> artiax view xy

[Repeated 2 time(s)]set axis size 237.42000635767963  
237.42000635767963  
['.arrow', '0', '0', '0', '237.42000635767963', '0', '0',
'15.828000423845308', '63.312001695381234']  

> artiax particles #1.2.1 originScaleFactor 15.828000423845308

> artiax view xy

> artiax particles #1.2.1 transScaleFactor 1.0

> artiax view xy

[Repeated 1 time(s)]

> artiax hide axes

> artiax particles #1.2.1 color 0,46,86,100

> artiax particles #1.2.1 radius 38.17619

> artiax particles #1.2.1 radius 78.44908

> artiax particles #1.2.1 radius 85.03919

> open /Users/ramtinhosseini/Downloads/yeast_ribosomes/80S_ref.mrc

Opened 80S_ref.mrc as #2, grid size 36,36,36, pixel 15.8, shown at level
0.178, step 1, values float32  

> artiax attach #2 toParticleList #1.2.1

Opened 80S_ref.mrc as #1.2.1.1.1, grid size 36,36,36, pixel 15.8, shown at
level 0.178, step 1, values float32  

> volume #1.2.1.1.1 capFaces false

> artiax show #1.2.1 surfaces

> ui mousemode right "mark center"

[Repeated 1 time(s)]

> ui mousemode right "mark point"

> artiax view xy

> artiax particles #1.2.1 radius 140.68901

set axis size 197.8033  
197.8033  
['.arrow', '0', '0', '0', '197.8033', '0', '0', '13.186886666666668',
'52.74754666666667']  
set axis size 192.67766  
192.67766  
['.arrow', '0', '0', '0', '192.67766', '0', '0', '12.845177333333334',
'51.380709333333336']  
set axis size 186.81978  
186.81978  
['.arrow', '0', '0', '0', '186.81978', '0', '0', '12.454652000000001',
'49.818608000000005']  
set axis size 181.69414  
181.69414  
['.arrow', '0', '0', '0', '181.69414', '0', '0', '12.112942666666667',
'48.45177066666667']  
set axis size 175.83626  
175.83626  
['.arrow', '0', '0', '0', '175.83626', '0', '0', '11.722417333333334',
'46.88966933333334']  
set axis size 169.97839  
169.97839  
['.arrow', '0', '0', '0', '169.97839', '0', '0', '11.331892666666667',
'45.32757066666667']  
set axis size 163.38828  
163.38828  
['.arrow', '0', '0', '0', '163.38828', '0', '0', '10.892552', '43.570208']  
set axis size 155.3337  
155.3337  
['.arrow', '0', '0', '0', '155.3337', '0', '0', '10.35558', '41.42232']  
set axis size 148.01136  
148.01136  
['.arrow', '0', '0', '0', '148.01136', '0', '0', '9.867424', '39.469696']  
set axis size 142.15348  
142.15348  
['.arrow', '0', '0', '0', '142.15348', '0', '0', '9.476898666666667',
'37.90759466666667']  
set axis size 137.02784  
137.02784  
['.arrow', '0', '0', '0', '137.02784', '0', '0', '9.135189333333333',
'36.54075733333333']  
set axis size 133.36667  
133.36667  
['.arrow', '0', '0', '0', '133.36667', '0', '0', '8.891111333333333',
'35.56444533333333']  
set axis size 130.43773  
130.43773  
['.arrow', '0', '0', '0', '130.43773', '0', '0', '8.695848666666667',
'34.783394666666666']  
set axis size 127.50879  
127.50879  
['.arrow', '0', '0', '0', '127.50879', '0', '0', '8.500586', '34.002344']  
set axis size 124.57985  
124.57985  
['.arrow', '0', '0', '0', '124.57985', '0', '0', '8.305323333333332',
'33.22129333333333']  
set axis size 122.38315  
122.38315  
['.arrow', '0', '0', '0', '122.38315', '0', '0', '8.158876666666666',
'32.635506666666664']  
set axis size 119.45421  
119.45421  
['.arrow', '0', '0', '0', '119.45421', '0', '0', '7.963614000000001',
'31.854456000000003']  
set axis size 117.25751  
117.25751  
['.arrow', '0', '0', '0', '117.25751', '0', '0', '7.817167333333333',
'31.26866933333333']  
set axis size 115.06081  
115.06081  
['.arrow', '0', '0', '0', '115.06081', '0', '0', '7.670720666666667',
'30.682882666666668']  
set axis size 112.13187  
112.13187  
['.arrow', '0', '0', '0', '112.13187', '0', '0', '7.475458000000001',
'29.901832000000002']  
set axis size 109.93516  
109.93516  
['.arrow', '0', '0', '0', '109.93516', '0', '0', '7.329010666666666',
'29.316042666666664']  
set axis size 107.73846  
107.73846  
['.arrow', '0', '0', '0', '107.73846', '0', '0', '7.182564', '28.730256']  
set axis size 105.54176  
105.54176  
['.arrow', '0', '0', '0', '105.54176', '0', '0', '7.036117333333333',
'28.144469333333333']  
set axis size 103.34505  
103.34505  
['.arrow', '0', '0', '0', '103.34505', '0', '0', '6.88967', '27.55868']  
set axis size 101.88059  
101.88059  
['.arrow', '0', '0', '0', '101.88059', '0', '0', '6.792039333333333',
'27.168157333333333']  
set axis size 101.14835  
101.14835  
['.arrow', '0', '0', '0', '101.14835', '0', '0', '6.743223333333333',
'26.97289333333333']  
set axis size 100.41612  
100.41612  
['.arrow', '0', '0', '0', '100.41612', '0', '0', '6.694408', '26.777632']  
set axis size 100.41612  
100.41612  
['.arrow', '0', '0', '0', '100.41612', '0', '0', '6.694408', '26.777632']  

> artiax particles #1.2.1 axesSize 100.41612

set axis size 99.68388  
99.68388  
['.arrow', '0', '0', '0', '99.68388', '0', '0', '6.645592', '26.582368']  
set axis size 98.21941  
98.21941  
['.arrow', '0', '0', '0', '98.21941', '0', '0', '6.5479606666666665',
'26.191842666666666']  
set axis size 93.82601  
93.82601  
['.arrow', '0', '0', '0', '93.82601', '0', '0', '6.255067333333333',
'25.02026933333333']  
set axis size 87.2359  
87.2359  
['.arrow', '0', '0', '0', '87.2359', '0', '0', '5.8157266666666665',
'23.262906666666666']  
set axis size 79.91355  
79.91355  
['.arrow', '0', '0', '0', '79.91355', '0', '0', '5.32757', '21.31028']  
set axis size 73.32344  
73.32344  
['.arrow', '0', '0', '0', '73.32344', '0', '0', '4.888229333333333',
'19.552917333333333']  
set axis size 68.93004  
68.93004  
['.arrow', '0', '0', '0', '68.93004', '0', '0', '4.5953360000000005',
'18.381344000000002']  
set axis size 61.60769  
61.60769  
['.arrow', '0', '0', '0', '61.60769', '0', '0', '4.107179333333333',
'16.42871733333333']  
set axis size 59.41099  
59.41099  
['.arrow', '0', '0', '0', '59.41099', '0', '0', '3.9607326666666665',
'15.842930666666666']  
set axis size 57.21429  
57.21429  
['.arrow', '0', '0', '0', '57.21429', '0', '0', '3.814286', '15.257144']  
set axis size 56.48205  
56.48205  
['.arrow', '0', '0', '0', '56.48205', '0', '0', '3.76547', '15.06188']  
set axis size 55.74982  
55.74982  
['.arrow', '0', '0', '0', '55.74982', '0', '0', '3.7166546666666664',
'14.866618666666666']  
set axis size 55.01758  
55.01758  
['.arrow', '0', '0', '0', '55.01758', '0', '0', '3.667838666666667',
'14.671354666666668']  
set axis size 54.28535  
54.28535  
['.arrow', '0', '0', '0', '54.28535', '0', '0', '3.6190233333333333',
'14.476093333333333']  
set axis size 53.55311  
53.55311  
['.arrow', '0', '0', '0', '53.55311', '0', '0', '3.5702073333333333',
'14.280829333333333']  
set axis size 52.08864  
52.08864  
['.arrow', '0', '0', '0', '52.08864', '0', '0', '3.4725759999999997',
'13.890303999999999']  
set axis size 51.35641  
51.35641  
['.arrow', '0', '0', '0', '51.35641', '0', '0', '3.4237606666666665',
'13.695042666666666']  
set axis size 49.89194  
49.89194  
['.arrow', '0', '0', '0', '49.89194', '0', '0', '3.3261293333333333',
'13.304517333333333']  
set axis size 48.42747  
48.42747  
['.arrow', '0', '0', '0', '48.42747', '0', '0', '3.228498', '12.913992']  
set axis size 46.23077  
46.23077  
['.arrow', '0', '0', '0', '46.23077', '0', '0', '3.0820513333333333',
'12.328205333333333']  
set axis size 44.03407  
44.03407  
['.arrow', '0', '0', '0', '44.03407', '0', '0', '2.935604666666667',
'11.742418666666667']  
set axis size 41.83736  
41.83736  
['.arrow', '0', '0', '0', '41.83736', '0', '0', '2.7891573333333333',
'11.156629333333333']  
set axis size 40.37289  
40.37289  
['.arrow', '0', '0', '0', '40.37289', '0', '0', '2.691526', '10.766104']  
set axis size 38.90842  
38.90842  
['.arrow', '0', '0', '0', '38.90842', '0', '0', '2.5938946666666665',
'10.375578666666666']  
set axis size 36.71172  
36.71172  
['.arrow', '0', '0', '0', '36.71172', '0', '0', '2.447448', '9.789792']  
set axis size 35.24725  
35.24725  
['.arrow', '0', '0', '0', '35.24725', '0', '0', '2.349816666666667',
'9.399266666666668']  
set axis size 33.05055  
33.05055  
['.arrow', '0', '0', '0', '33.05055', '0', '0', '2.20337', '8.81348']  
set axis size 30.85385  
30.85385  
['.arrow', '0', '0', '0', '30.85385', '0', '0', '2.056923333333333',
'8.227693333333333']  
set axis size 28.65714  
28.65714  
['.arrow', '0', '0', '0', '28.65714', '0', '0', '1.9104759999999998',
'7.641903999999999']  
set axis size 27.92491  
27.92491  
['.arrow', '0', '0', '0', '27.92491', '0', '0', '1.8616606666666666',
'7.4466426666666665']  
set axis size 27.92491  
27.92491  
['.arrow', '0', '0', '0', '27.92491', '0', '0', '1.8616606666666666',
'7.4466426666666665']  

> artiax particles #1.2.1 axesSize 27.92491

set axis size 26.46044  
26.46044  
['.arrow', '0', '0', '0', '26.46044', '0', '0', '1.7640293333333332',
'7.056117333333333']  
set axis size 27.19267  
27.19267  
['.arrow', '0', '0', '0', '27.19267', '0', '0', '1.8128446666666667',
'7.251378666666667']  
set axis size 30.12161  
30.12161  
['.arrow', '0', '0', '0', '30.12161', '0', '0', '2.0081073333333332',
'8.032429333333333']  
set axis size 34.51502  
34.51502  
['.arrow', '0', '0', '0', '34.51502', '0', '0', '2.3010013333333332',
'9.204005333333333']  
set axis size 41.10513  
41.10513  
['.arrow', '0', '0', '0', '41.10513', '0', '0', '2.740342', '10.961368']  
set axis size 48.42747  
48.42747  
['.arrow', '0', '0', '0', '48.42747', '0', '0', '3.228498', '12.913992']  
set axis size 59.41099  
59.41099  
['.arrow', '0', '0', '0', '59.41099', '0', '0', '3.9607326666666665',
'15.842930666666666']  
set axis size 72.59121  
72.59121  
['.arrow', '0', '0', '0', '72.59121', '0', '0', '4.8394140000000005',
'19.357656000000002']  
set axis size 84.30696  
84.30696  
['.arrow', '0', '0', '0', '84.30696', '0', '0', '5.620464', '22.481856']  
set axis size 96.02271  
96.02271  
['.arrow', '0', '0', '0', '96.02271', '0', '0', '6.401514000000001',
'25.606056000000002']  
set axis size 107.00623  
107.00623  
['.arrow', '0', '0', '0', '107.00623', '0', '0', '7.1337486666666665',
'28.534994666666666']  
set axis size 115.79304  
115.79304  
['.arrow', '0', '0', '0', '115.79304', '0', '0', '7.719536000000001',
'30.878144000000002']  
set axis size 122.38315  
122.38315  
['.arrow', '0', '0', '0', '122.38315', '0', '0', '8.158876666666666',
'32.635506666666664']  
set axis size 126.77656  
126.77656  
['.arrow', '0', '0', '0', '126.77656', '0', '0', '8.451770666666667',
'33.807082666666666']  
set axis size 130.43773  
130.43773  
['.arrow', '0', '0', '0', '130.43773', '0', '0', '8.695848666666667',
'34.783394666666666']  
set axis size 133.36667  
133.36667  
['.arrow', '0', '0', '0', '133.36667', '0', '0', '8.891111333333333',
'35.56444533333333']  
set axis size 134.0989  
134.0989  
['.arrow', '0', '0', '0', '134.0989', '0', '0', '8.939926666666667',
'35.759706666666666']  
set axis size 134.83114  
134.83114  
['.arrow', '0', '0', '0', '134.83114', '0', '0', '8.988742666666667',
'35.95497066666667']  
set axis size 134.83114  
134.83114  
['.arrow', '0', '0', '0', '134.83114', '0', '0', '8.988742666666667',
'35.95497066666667']  

> artiax particles #1.2.1 axesSize 134.83114

set axis size 139.22454  
139.22454  
['.arrow', '0', '0', '0', '139.22454', '0', '0', '9.281635999999999',
'37.126543999999996']  
set axis size 139.95678  
139.95678  
['.arrow', '0', '0', '0', '139.95678', '0', '0', '9.330452000000001',
'37.321808000000004']  
set axis size 140.68901  
140.68901  
['.arrow', '0', '0', '0', '140.68901', '0', '0', '9.379267333333333',
'37.51706933333333']  
set axis size 142.88571  
142.88571  
['.arrow', '0', '0', '0', '142.88571', '0', '0', '9.525713999999999',
'38.102855999999996']  
set axis size 145.08242  
145.08242  
['.arrow', '0', '0', '0', '145.08242', '0', '0', '9.672161333333333',
'38.688645333333334']  
set axis size 149.47582  
149.47582  
['.arrow', '0', '0', '0', '149.47582', '0', '0', '9.965054666666667',
'39.86021866666667']  
set axis size 153.86923  
153.86923  
['.arrow', '0', '0', '0', '153.86923', '0', '0', '10.257948666666666',
'41.03179466666666']  
set axis size 158.99487  
158.99487  
['.arrow', '0', '0', '0', '158.99487', '0', '0', '10.599658', '42.398632']  
set axis size 164.85275  
164.85275  
['.arrow', '0', '0', '0', '164.85275', '0', '0', '10.990183333333333',
'43.96073333333333']  
set axis size 169.97839  
169.97839  
['.arrow', '0', '0', '0', '169.97839', '0', '0', '11.331892666666667',
'45.32757066666667']  
set axis size 173.63956  
173.63956  
['.arrow', '0', '0', '0', '173.63956', '0', '0', '11.575970666666667',
'46.30388266666667']  
set axis size 176.5685  
176.5685  
['.arrow', '0', '0', '0', '176.5685', '0', '0', '11.771233333333333',
'47.08493333333333']  
set axis size 178.03297  
178.03297  
['.arrow', '0', '0', '0', '178.03297', '0', '0', '11.868864666666667',
'47.47545866666667']  
set axis size 178.7652  
178.7652  
['.arrow', '0', '0', '0', '178.7652', '0', '0', '11.917679999999999',
'47.670719999999996']  
set axis size 178.7652  
178.7652  
['.arrow', '0', '0', '0', '178.7652', '0', '0', '11.917679999999999',
'47.670719999999996']  

> artiax particles #1.2.1 axesSize 178.7652

set axis size 180.9619  
180.9619  
['.arrow', '0', '0', '0', '180.9619', '0', '0', '12.064126666666668',
'48.256506666666674']  
set axis size 183.15861  
183.15861  
['.arrow', '0', '0', '0', '183.15861', '0', '0', '12.210574000000001',
'48.842296000000005']  
set axis size 182.42637  
182.42637  
['.arrow', '0', '0', '0', '182.42637', '0', '0', '12.161757999999999',
'48.647031999999996']  
set axis size 179.49744  
179.49744  
['.arrow', '0', '0', '0', '179.49744', '0', '0', '11.966496000000001',
'47.865984000000005']  
set axis size 174.37179  
174.37179  
['.arrow', '0', '0', '0', '174.37179', '0', '0', '11.624786', '46.499144']  
set axis size 167.04945  
167.04945  
['.arrow', '0', '0', '0', '167.04945', '0', '0', '11.13663', '44.54652']  
set axis size 158.99487  
158.99487  
['.arrow', '0', '0', '0', '158.99487', '0', '0', '10.599658', '42.398632']  
set axis size 150.94029  
150.94029  
['.arrow', '0', '0', '0', '150.94029', '0', '0', '10.062686000000001',
'40.250744000000005']  
set axis size 142.88571  
142.88571  
['.arrow', '0', '0', '0', '142.88571', '0', '0', '9.525713999999999',
'38.102855999999996']  
set axis size 138.49231  
138.49231  
['.arrow', '0', '0', '0', '138.49231', '0', '0', '9.232820666666667',
'36.93128266666667']  
set axis size 134.0989  
134.0989  
['.arrow', '0', '0', '0', '134.0989', '0', '0', '8.939926666666667',
'35.759706666666666']  
set axis size 128.97326  
128.97326  
['.arrow', '0', '0', '0', '128.97326', '0', '0', '8.598217333333334',
'34.39286933333334']  
set axis size 125.31209  
125.31209  
['.arrow', '0', '0', '0', '125.31209', '0', '0', '8.354139333333332',
'33.41655733333333']  
set axis size 122.38315  
122.38315  
['.arrow', '0', '0', '0', '122.38315', '0', '0', '8.158876666666666',
'32.635506666666664']  
set axis size 119.45421  
119.45421  
['.arrow', '0', '0', '0', '119.45421', '0', '0', '7.963614000000001',
'31.854456000000003']  
set axis size 117.98974  
117.98974  
['.arrow', '0', '0', '0', '117.98974', '0', '0', '7.865982666666667',
'31.463930666666666']  
set axis size 116.52527  
116.52527  
['.arrow', '0', '0', '0', '116.52527', '0', '0', '7.768351333333333',
'31.073405333333334']  
set axis size 115.79304  
115.79304  
['.arrow', '0', '0', '0', '115.79304', '0', '0', '7.719536000000001',
'30.878144000000002']  
set axis size 115.06081  
115.06081  
['.arrow', '0', '0', '0', '115.06081', '0', '0', '7.670720666666667',
'30.682882666666668']  
set axis size 114.32857  
114.32857  
['.arrow', '0', '0', '0', '114.32857', '0', '0', '7.6219046666666666',
'30.487618666666666']  
set axis size 113.59634  
113.59634  
['.arrow', '0', '0', '0', '113.59634', '0', '0', '7.573089333333333',
'30.29235733333333']  
set axis size 112.8641  
112.8641  
['.arrow', '0', '0', '0', '112.8641', '0', '0', '7.5242733333333325',
'30.09709333333333']  
set axis size 112.13187  
112.13187  
['.arrow', '0', '0', '0', '112.13187', '0', '0', '7.475458000000001',
'29.901832000000002']  
set axis size 111.39963  
111.39963  
['.arrow', '0', '0', '0', '111.39963', '0', '0', '7.426642', '29.706568']  
set axis size 109.93516  
109.93516  
['.arrow', '0', '0', '0', '109.93516', '0', '0', '7.329010666666666',
'29.316042666666664']  
set axis size 106.27399  
106.27399  
['.arrow', '0', '0', '0', '106.27399', '0', '0', '7.084932666666666',
'28.339730666666664']  
set axis size 100.41612  
100.41612  
['.arrow', '0', '0', '0', '100.41612', '0', '0', '6.694408', '26.777632']  
set axis size 94.55824  
94.55824  
['.arrow', '0', '0', '0', '94.55824', '0', '0', '6.3038826666666665',
'25.215530666666666']  
set axis size 88.70037  
88.70037  
['.arrow', '0', '0', '0', '88.70037', '0', '0', '5.913358000000001',
'23.653432000000002']  
set axis size 83.57473  
83.57473  
['.arrow', '0', '0', '0', '83.57473', '0', '0', '5.5716486666666665',
'22.286594666666666']  
set axis size 79.91355  
79.91355  
['.arrow', '0', '0', '0', '79.91355', '0', '0', '5.32757', '21.31028']  
set axis size 77.71685  
77.71685  
['.arrow', '0', '0', '0', '77.71685', '0', '0', '5.181123333333333',
'20.72449333333333']  
set axis size 76.25238  
76.25238  
['.arrow', '0', '0', '0', '76.25238', '0', '0', '5.083492000000001',
'20.333968000000002']  
set axis size 74.05568  
74.05568  
['.arrow', '0', '0', '0', '74.05568', '0', '0', '4.937045333333333',
'19.74818133333333']  
set axis size 73.32344  
73.32344  
['.arrow', '0', '0', '0', '73.32344', '0', '0', '4.888229333333333',
'19.552917333333333']  
set axis size 72.59121  
72.59121  
['.arrow', '0', '0', '0', '72.59121', '0', '0', '4.8394140000000005',
'19.357656000000002']  
set axis size 72.59121  
72.59121  
['.arrow', '0', '0', '0', '72.59121', '0', '0', '4.8394140000000005',
'19.357656000000002']  

> artiax particles #1.2.1 axesSize 72.59121

> artiax particles #1.2.1 radius 63.07216

> artiax view yz

> artiax view xz

> artiax view xy

> artiax tomo #1.1.1 slice 102

> artiax show axes

> artiax hide axes

> artiax hide surfaces

> ui mousemode right "delete picked particle"

[Repeated 1 time(s)]

> ui mousemode right translate

> ui mousemode right pivot

> ui mousemode right select

> artiax view xy

> ui mousemode right "mark surface"

> ui mousemode right "mark maximum"

> ui mousemode right "mark plane"

> artiax view xy

Opened YTC009_3_lam7_ts2.mrc_15.83Apx.mrc as #1.1.1, grid size 682,960,234,
pixel 15.8,15.8,15.8, shown at level 0.0434, step 1, values float32  

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

Opened YTC009_3_lam8_ts2_corrected.mrc as #1.1.1, grid size 682,960,234, pixel
15.8,15.8,15.8, shown at level 0.229, step 1, values float32  

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

[Repeated 1 time(s)]

> artiax view xz

> artiax view yz

> artiax view xz

> artiax view xy

> artiax view xz

> artiax particles #1.2.1 radius 49.89194

> artiax view xz

> open
> /Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam8_ts2_corrected_80S_ref.star
> format star

Traceback (most recent call last):  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/chimerax/artiax/widgets/ArtiaxOpenDialog.py", line 66, in _qt_safe  
run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + (""  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 119, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 194, in provider_open  
models, status = collated_open(session, None, [data], data_format,
_add_models,  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 464, in collated_open  
return remember_data_format()  
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 435, in remember_data_format  
models, status = func(*func_args, **func_kw)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/chimerax/artiax/io/formats.py", line 25, in open  
return open_particle_list(session, data, file_name, format_name=self.name,
from_chimx=True)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/chimerax/artiax/io/io.py", line 35, in open_particle_list  
data = formats[format_name].particle_data(session, file_name, oripix=1,
trapix=1, additional_files=additional_files)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/chimerax/artiax/io/RELION/RELIONParticleData.py", line 120, in
__init__  
super().__init__(session, file_name, oripix=oripix, trapix=trapix,
additional_files=additional_files)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/chimerax/artiax/io/ParticleData.py", line 441, in __init__  
self.read_file()  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/chimerax/artiax/io/RELION/RELIONParticleData.py", line 123, in
read_file  
content = starfile.read(self.file_name, always_dict=True)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/starfile/functions.py", line 24, in read  
star = StarParser(filename, read_n_blocks=read_n_blocks)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/starfile/parser.py", line 30, in __init__  
self.parse_file()  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/starfile/parser.py", line 38, in parse_file  
self._parse_data_block()  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/starfile/parser.py", line 54, in _parse_data_block  
self._parse_loop_block()  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/starfile/parser.py", line 77, in _parse_loop_block  
df = self._parse_loop_data()  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/starfile/parser.py", line 177, in _parse_loop_data  
df = pd.read_csv(  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/pandas/io/parsers/readers.py", line 912, in read_csv  
return _read(filepath_or_buffer, kwds)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/pandas/io/parsers/readers.py", line 583, in _read  
return parser.read(nrows)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/pandas/io/parsers/readers.py", line 1704, in read  
) = self._engine.read( # type: ignore[attr-defined]  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/pandas/io/parsers/c_parser_wrapper.py", line 234, in read  
chunks = self._reader.read_low_memory(nrows)  
File "pandas/_libs/parsers.pyx", line 814, in
pandas._libs.parsers.TextReader.read_low_memory  
File "pandas/_libs/parsers.pyx", line 875, in
pandas._libs.parsers.TextReader._read_rows  
File "pandas/_libs/parsers.pyx", line 850, in
pandas._libs.parsers.TextReader._tokenize_rows  
File "pandas/_libs/parsers.pyx", line 861, in
pandas._libs.parsers.TextReader._check_tokenize_status  
File "pandas/_libs/parsers.pyx", line 2029, in
pandas._libs.parsers.raise_parser_error  
pandas.errors.ParserError: Error tokenizing data. C error: Expected 1 fields
in line 12, saw 10  
  
  
pandas.errors.ParserError: Error tokenizing data. C error: Expected 1 fields
in line 12, saw 10  
  
  
File "pandas/_libs/parsers.pyx", line 2029, in
pandas._libs.parsers.raise_parser_error  
  
See log for complete Python traceback.  
  

> open
> /Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam8_ts2_corrected_80S_ref.star
> format star

Summary of feedback from opening
/Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam8_ts2_corrected_80S_ref.star  
---  
notes | 15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Opened Particle list YTC009_3_lam8_ts2_corrected_80S_ref.star with 2216
particles.  
set axis size 237.0  
237.0  
['.arrow', '0', '0', '0', '237.0', '0', '0', '15.8', '63.2']  

> artiax particles #1.2.2 originScaleFactor 15.8

> artiax view xy

> hide #!1.1.1 models

> artiax hide axes

> hide #!1.2.2 models

> show #!1.2.2 models

> hide #!1.2.1 models

> hide #!1.2.2 models

> open
> /Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref.star
> format star

Summary of feedback from opening
/Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref.star  
---  
notes | 15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Opened Particle list YTC009_3_lam7_ts2_corrected_80S_ref.star with 2287
particles.  
set axis size 237.0  
237.0  
['.arrow', '0', '0', '0', '237.0', '0', '0', '15.8', '63.2']  

> artiax particles #1.2.1 originScaleFactor 15.8

> artiax view xy

> open
> /Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref.star
> format star

Summary of feedback from opening
/Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref.star  
---  
notes | 15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Opened Particle list YTC009_3_lam7_ts2_corrected_80S_ref.star with 2287
particles.  

> artiax tomo #1.1.1 pixelSize 15.828000423845308

> artiax view xy

set axis size 237.42000635767963  
237.42000635767963  
['.arrow', '0', '0', '0', '237.42000635767963', '0', '0',
'15.828000423845308', '63.312001695381234']  

> artiax particles #1.2.2 originScaleFactor 15.828000423845308

> artiax view xy

> artiax hide axes

[Repeated 2 time(s)]

> show #!1.1.1 models

Opened YTC009_3_lam7_ts2_corrected.mrc as #1.1.1, grid size 682,960,234, pixel
15.8,15.8,15.8, shown at level 0.241, step 1, values float32  

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

[Repeated 2 time(s)]

> hide #!1.2.2 models

> show #!1.2.2 models

> hide #!1.2.1 models

> volume #1.1.1 step 16

> volume #1.1.1 step 2

> volume #1.1.1 step 4

> volume #1.1.1 step 1

> volume #1.1.1 style surface

> volume #1.1.1 style image imageMode "full region"

> volume #1.1.1 style mesh

> volume #1.1.1 style image region 0,0,116,681,959,116 step 1 showOutlineBox
> true

> artiax view yz

> artiax view xz

> artiax view yz

> artiax view xz

> artiax view xy

2287 atoms, 2287 residues, atom rlnCoordinateX range 10 to 671  
[Repeated 1 time(s)]

> artiax colormap #1.2.2.3 rlnCoordinateX palette redgreen minValue 10.0
> maxValue 671.0 transparency 0.0

> artiax particles #1.2.2 color 0,46,86,100

2287 atoms, 2287 residues, atom rlnCoordinateX range 10 to 671  
[Repeated 1 time(s)]

> artiax colormap #1.2.2.3 rlnCoordinateX palette redgreen minValue 10.0
> maxValue 671.0 transparency 0.0

2287 atoms, 2287 residues, atom rlnGroupNumber range 0 to 0  
[Repeated 1 time(s)]

> artiax colormap #1.2.2.3 rlnGroupNumber palette redgreen minValue 0.0
> maxValue 0.0 transparency 0.0

> artiax tomo #1.1.1 slice 1

[Repeated 1 time(s)]

> artiax tomo #1.1.1 slice 0

[Repeated 2 time(s)]

> artiax tomo #1.1.1 slice 1

[Repeated 7 time(s)]

> hide #!1.1.1 models

> show #!1.1.1 models

> hide #!1.1.1 models

> show #!1.1.1 models

> artiax tomo #1.1.1 pixelSize 15.828000423845308

> artiax view xy

> artiax tomo #1.1.1 pixelSize 15.828000423845308

> artiax view xy

> artiax tomo #1.1.1 pixelSize 15.828000423845308

> artiax view xy

> artiax tomo #1.1.1 pixelSize 15.828000423845308

> artiax view xy

> artiax tomo #1.1.1 slice 1

[Repeated 2 time(s)]

> artiax view xy

[Repeated 5 time(s)]

> artiax start

> artiax flip y

> artiax flip x

> ui mousemode right "mark point"

> open help:user/artiax_index.html

Opened help:user/artiax_index.html  

> artiax start

[Repeated 1 time(s)]

> close session

> artiax start

Using preset: ArtiaX / Artiax Default  
Preset expands to these ChimeraX commands:

    
    
    set bgColor black
    lighting depthCue false
    camera ortho

  
Opened YTC009_3_lam7_ts2_corrected.mrc as #1.1.1, grid size 682,960,234, pixel
15.8,15.8,15.8, shown at level 0.241, step 1, values float32  

> artiax tomo #1.1.1 sliceDirection 0,0,1

> artiax view xy

> artiax tomo #1.1.1 contrastWidth 2.89391

/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/opengl.py:1026: RuntimeWarning: divide by zero
encountered in double_scalars  
p.set_vector2('colormap_range', (s*v0, 1/(s*(v1-v0))))  

> artiax tomo #1.1.1 contrastWidth 0.6755

> artiax tomo #1.1.1 contrastCenter -0.26345

[Repeated 1 time(s)]

> artiax tomo #1.1.1 contrastCenter -0.1884

> artiax tomo #1.1.1 contrastCenter -0.03829

> artiax tomo #1.1.1 contrastCenter -0.26345

> artiax tomo #1.1.1 slice 119

> artiax tomo #1.1.1 slice 118

> open
> /Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref.star
> format star

Summary of feedback from opening
/Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref.star  
---  
notes | 15  
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']  
  
Opened Particle list YTC009_3_lam7_ts2_corrected_80S_ref.star with 2287
particles.  

> artiax tomo #1.1.1 pixelSize 15.828000423845308

> artiax view xy

set axis size 237.42000635767963  
237.42000635767963  
['.arrow', '0', '0', '0', '237.42000635767963', '0', '0',
'15.828000423845308', '63.312001695381234']  

> artiax particles #1.2.1 originScaleFactor 15.828000423845308

> artiax view xy

> artiax hide axes

> artiax tomo #1.1.1 contrastCenter -0.78884

> artiax tomo #1.1.1 contrastWidth 3.15234

> artiax tomo #1.1.1 contrastCenter -0.33851

> artiax tomo #1.1.1 contrastWidth 6.07952

> artiax tomo #1.1.1 sliceDirection 0.0,0.0,0.0

Traceback (most recent call last):  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent  
opt = self._styleOption  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption  
self.initStyleOption(opt)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption  
option.tickInterval = self._to_qinteger_space(self._tickInterval)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
  
See log for complete Python traceback.  
  

QBackingStore::endPaint() called with active painter; did you forget to
destroy it or call QPainter::end() on it?  

Traceback (most recent call last):  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent  
opt = self._styleOption  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption  
self.initStyleOption(opt)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption  
option.tickInterval = self._to_qinteger_space(self._tickInterval)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent  
opt = self._styleOption  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption  
self.initStyleOption(opt)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption  
option.tickInterval = self._to_qinteger_space(self._tickInterval)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
  
See log for complete Python traceback.  
  

QBackingStore::endPaint() called with active painter; did you forget to
destroy it or call QPainter::end() on it?  

Traceback (most recent call last):  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event  
self._updateHoverControl(_event_position(ev))  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl  
if lastHoverControl != self._newHoverControl(pos) and doesHover:  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl  
opt = self._styleOption  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption  
self.initStyleOption(opt)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption  
option.tickInterval = self._to_qinteger_space(self._tickInterval)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event  
self._updateHoverControl(_event_position(ev))  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl  
if lastHoverControl != self._newHoverControl(pos) and doesHover:  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl  
opt = self._styleOption  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption  
self.initStyleOption(opt)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption  
option.tickInterval = self._to_qinteger_space(self._tickInterval)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event  
self._updateHoverControl(_event_position(ev))  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl  
if lastHoverControl != self._newHoverControl(pos) and doesHover:  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl  
opt = self._styleOption  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption  
self.initStyleOption(opt)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption  
option.tickInterval = self._to_qinteger_space(self._tickInterval)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event  
self._updateHoverControl(_event_position(ev))  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl  
if lastHoverControl != self._newHoverControl(pos) and doesHover:  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl  
opt = self._styleOption  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption  
self.initStyleOption(opt)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption  
option.tickInterval = self._to_qinteger_space(self._tickInterval)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event  
self._updateHoverControl(_event_position(ev))  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl  
if lastHoverControl != self._newHoverControl(pos) and doesHover:  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl  
opt = self._styleOption  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption  
self.initStyleOption(opt)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption  
option.tickInterval = self._to_qinteger_space(self._tickInterval)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event  
self._updateHoverControl(_event_position(ev))  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl  
if lastHoverControl != self._newHoverControl(pos) and doesHover:  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl  
opt = self._styleOption  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption  
self.initStyleOption(opt)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption  
option.tickInterval = self._to_qinteger_space(self._tickInterval)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event  
self._updateHoverControl(_event_position(ev))  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl  
if lastHoverControl != self._newHoverControl(pos) and doesHover:  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl  
opt = self._styleOption  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption  
self.initStyleOption(opt)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption  
option.tickInterval = self._to_qinteger_space(self._tickInterval)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event  
self._updateHoverControl(_event_position(ev))  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl  
if lastHoverControl != self._newHoverControl(pos) and doesHover:  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl  
opt = self._styleOption  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption  
self.initStyleOption(opt)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption  
option.tickInterval = self._to_qinteger_space(self._tickInterval)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption  
option.tickInterval = self._to_qinteger_space(self._tickInterval)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent  
opt = self._styleOption  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption  
self.initStyleOption(opt)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption  
option.tickInterval = self._to_qinteger_space(self._tickInterval)  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
ZeroDivisionError: float division by zero  
  
ZeroDivisionError: float division by zero  
  
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space  
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))  
  
See log for complete Python traceback.  
  

QBackingStore::endPaint() called with active painter; did you forget to
destroy it or call QPainter::end() on it?  

[Repeated 1 time(s)]




OpenGL version: 4.1 ATI-4.10.12
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro16,1
      Processor Name: 8-Core Intel Core i9
      Processor Speed: 2.3 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache (per Core): 256 KB
      L3 Cache: 16 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 1968.100.17.0.0 (iBridge: 20.16.4252.0.0,0)
      OS Loader Version: 577~129

Software:

    System Software Overview:

      System Version: macOS 13.3 (22E252)
      Kernel Version: Darwin 22.4.0
      Time since boot: 1 day, 5 hours, 7 minutes

Graphics/Displays:

    Intel UHD Graphics 630:

      Chipset Model: Intel UHD Graphics 630
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3e9b
      Revision ID: 0x0002
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Support: Metal 3

    AMD Radeon Pro 5500M:

      Chipset Model: AMD Radeon Pro 5500M
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x16
      VRAM (Total): 4 GB
      Vendor: AMD (0x1002)
      Device ID: 0x7340
      Revision ID: 0x0040
      ROM Revision: 113-D3220E-190
      VBIOS Version: 113-D32206U1-019
      Option ROM Version: 113-D32206U1-019
      EFI Driver Version: 01.A1.190
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-In Retina LCD
          Resolution: 3072 x 1920 Retina
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-ArtiaX: 0.3
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    geomdl: 5.3.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.2.22
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    pandas: 2.0.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    starfile: 0.4.12
    superqt: 0.5.3
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0