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Opened 2 years ago
Last modified 2 years ago
#9741 assigned defect
ArtiaX: slider: float division by zero
| Reported by: | Owned by: | Utz Ermel | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Third Party | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> "/Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref
> copy.star" format star
Summary of feedback from opening
/Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref
copy.star
---
notes | Using preset: ArtiaX / Artiax Default
Preset expands to these ChimeraX commands:
set bgColor black
lighting depthCue false
camera ortho
15
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']
Opened Particle list YTC009_3_lam7_ts2_corrected_80S_ref copy.star with 2287
particles.
set axis size 15.47692
15.47692
['.arrow', '0', '0', '0', '15.47692', '0', '0', '1.0317946666666666',
'4.1271786666666666']
set axis size 14.01245
14.01245
['.arrow', '0', '0', '0', '14.01245', '0', '0', '0.9341633333333333',
'3.7366533333333334']
set axis size 14.74469
14.74469
['.arrow', '0', '0', '0', '14.74469', '0', '0', '0.9829793333333333',
'3.9319173333333333']
set axis size 16.20916
16.20916
['.arrow', '0', '0', '0', '16.20916', '0', '0', '1.0806106666666666',
'4.322442666666666']
set axis size 18.40586
18.40586
['.arrow', '0', '0', '0', '18.40586', '0', '0', '1.2270573333333334',
'4.908229333333334']
set axis size 21.3348
21.3348
['.arrow', '0', '0', '0', '21.3348', '0', '0', '1.42232', '5.68928']
set axis size 23.5315
23.5315
['.arrow', '0', '0', '0', '23.5315', '0', '0', '1.5687666666666666',
'6.275066666666667']
set axis size 26.46044
26.46044
['.arrow', '0', '0', '0', '26.46044', '0', '0', '1.7640293333333332',
'7.056117333333333']
set axis size 28.65714
28.65714
['.arrow', '0', '0', '0', '28.65714', '0', '0', '1.9104759999999998',
'7.641903999999999']
set axis size 30.85385
30.85385
['.arrow', '0', '0', '0', '30.85385', '0', '0', '2.056923333333333',
'8.227693333333333']
set axis size 32.31832
32.31832
['.arrow', '0', '0', '0', '32.31832', '0', '0', '2.154554666666667',
'8.618218666666667']
set axis size 34.51502
34.51502
['.arrow', '0', '0', '0', '34.51502', '0', '0', '2.3010013333333332',
'9.204005333333333']
set axis size 35.97949
35.97949
['.arrow', '0', '0', '0', '35.97949', '0', '0', '2.3986326666666664',
'9.594530666666666']
set axis size 37.44396
37.44396
['.arrow', '0', '0', '0', '37.44396', '0', '0', '2.4962639999999996',
'9.985055999999998']
set axis size 38.90842
38.90842
['.arrow', '0', '0', '0', '38.90842', '0', '0', '2.5938946666666665',
'10.375578666666666']
set axis size 39.64066
39.64066
['.arrow', '0', '0', '0', '39.64066', '0', '0', '2.6427106666666664',
'10.570842666666666']
set axis size 41.10513
41.10513
['.arrow', '0', '0', '0', '41.10513', '0', '0', '2.740342', '10.961368']
set axis size 41.83736
41.83736
['.arrow', '0', '0', '0', '41.83736', '0', '0', '2.7891573333333333',
'11.156629333333333']
set axis size 42.5696
42.5696
['.arrow', '0', '0', '0', '42.5696', '0', '0', '2.8379733333333332',
'11.351893333333333']
set axis size 43.30183
43.30183
['.arrow', '0', '0', '0', '43.30183', '0', '0', '2.886788666666667',
'11.547154666666668']
set axis size 44.03407
44.03407
['.arrow', '0', '0', '0', '44.03407', '0', '0', '2.935604666666667',
'11.742418666666667']
set axis size 44.7663
44.7663
['.arrow', '0', '0', '0', '44.7663', '0', '0', '2.98442', '11.93768']
set axis size 45.49853
45.49853
['.arrow', '0', '0', '0', '45.49853', '0', '0', '3.0332353333333333',
'12.132941333333333']
set axis size 46.23077
46.23077
['.arrow', '0', '0', '0', '46.23077', '0', '0', '3.0820513333333333',
'12.328205333333333']
set axis size 46.963
46.963
['.arrow', '0', '0', '0', '46.963', '0', '0', '3.130866666666667',
'12.523466666666668']
set axis size 47.69524
47.69524
['.arrow', '0', '0', '0', '47.69524', '0', '0', '3.1796826666666664',
'12.718730666666666']
set axis size 48.42747
48.42747
['.arrow', '0', '0', '0', '48.42747', '0', '0', '3.228498', '12.913992']
set axis size 49.15971
49.15971
['.arrow', '0', '0', '0', '49.15971', '0', '0', '3.2773139999999996',
'13.109255999999998']
set axis size 49.89194
49.89194
['.arrow', '0', '0', '0', '49.89194', '0', '0', '3.3261293333333333',
'13.304517333333333']
set axis size 49.15971
49.15971
['.arrow', '0', '0', '0', '49.15971', '0', '0', '3.2773139999999996',
'13.109255999999998']
set axis size 47.69524
47.69524
['.arrow', '0', '0', '0', '47.69524', '0', '0', '3.1796826666666664',
'12.718730666666666']
set axis size 44.7663
44.7663
['.arrow', '0', '0', '0', '44.7663', '0', '0', '2.98442', '11.93768']
set axis size 42.5696
42.5696
['.arrow', '0', '0', '0', '42.5696', '0', '0', '2.8379733333333332',
'11.351893333333333']
set axis size 39.64066
39.64066
['.arrow', '0', '0', '0', '39.64066', '0', '0', '2.6427106666666664',
'10.570842666666666']
set axis size 36.71172
36.71172
['.arrow', '0', '0', '0', '36.71172', '0', '0', '2.447448', '9.789792']
set axis size 33.78278
33.78278
['.arrow', '0', '0', '0', '33.78278', '0', '0', '2.2521853333333337',
'9.008741333333335']
set axis size 30.85385
30.85385
['.arrow', '0', '0', '0', '30.85385', '0', '0', '2.056923333333333',
'8.227693333333333']
set axis size 27.92491
27.92491
['.arrow', '0', '0', '0', '27.92491', '0', '0', '1.8616606666666666',
'7.4466426666666665']
set axis size 24.26374
24.26374
['.arrow', '0', '0', '0', '24.26374', '0', '0', '1.6175826666666666',
'6.4703306666666665']
set axis size 22.06703
22.06703
['.arrow', '0', '0', '0', '22.06703', '0', '0', '1.4711353333333332',
'5.884541333333333']
set axis size 18.40586
18.40586
['.arrow', '0', '0', '0', '18.40586', '0', '0', '1.2270573333333334',
'4.908229333333334']
set axis size 15.47692
15.47692
['.arrow', '0', '0', '0', '15.47692', '0', '0', '1.0317946666666666',
'4.1271786666666666']
set axis size 13.28022
13.28022
['.arrow', '0', '0', '0', '13.28022', '0', '0', '0.885348', '3.541392']
set axis size 11.08352
11.08352
['.arrow', '0', '0', '0', '11.08352', '0', '0', '0.7389013333333333',
'2.955605333333333']
set axis size 8.88681
8.88681
['.arrow', '0', '0', '0', '8.88681', '0', '0', '0.592454', '2.369816']
set axis size 8.15458
8.15458
['.arrow', '0', '0', '0', '8.15458', '0', '0', '0.5436386666666666',
'2.1745546666666664']
set axis size 7.42234
7.42234
['.arrow', '0', '0', '0', '7.42234', '0', '0', '0.4948226666666667',
'1.9792906666666668']
set axis size 6.69011
6.69011
['.arrow', '0', '0', '0', '6.69011', '0', '0', '0.4460073333333333',
'1.7840293333333332']
set axis size 5.95788
5.95788
['.arrow', '0', '0', '0', '5.95788', '0', '0', '0.39719200000000005',
'1.5887680000000002']
set axis size 5.22564
5.22564
['.arrow', '0', '0', '0', '5.22564', '0', '0', '0.348376', '1.393504']
set axis size 4.49341
4.49341
['.arrow', '0', '0', '0', '4.49341', '0', '0', '0.29956066666666664',
'1.1982426666666666']
set axis size 3.76117
3.76117
['.arrow', '0', '0', '0', '3.76117', '0', '0', '0.25074466666666667',
'1.0029786666666667']
set axis size 3.02894
3.02894
['.arrow', '0', '0', '0', '3.02894', '0', '0', '0.20192933333333332',
'0.8077173333333333']
set axis size 2.2967
2.2967
['.arrow', '0', '0', '0', '2.2967', '0', '0', '0.15311333333333332',
'0.6124533333333333']
set axis size 1.56447
1.56447
['.arrow', '0', '0', '0', '1.56447', '0', '0', '0.104298', '0.417192']
set axis size 0.83223
0.83223
['.arrow', '0', '0', '0', '0.83223', '0', '0', '0.055482000000000004',
'0.22192800000000001']
set axis size 0.1
0.1
['.arrow', '0', '0', '0', '0.1', '0', '0', '0.006666666666666667',
'0.02666666666666667']
set axis size 0.83223
0.83223
['.arrow', '0', '0', '0', '0.83223', '0', '0', '0.055482000000000004',
'0.22192800000000001']
set axis size 1.56447
1.56447
['.arrow', '0', '0', '0', '1.56447', '0', '0', '0.104298', '0.417192']
set axis size 3.02894
3.02894
['.arrow', '0', '0', '0', '3.02894', '0', '0', '0.20192933333333332',
'0.8077173333333333']
set axis size 3.76117
3.76117
['.arrow', '0', '0', '0', '3.76117', '0', '0', '0.25074466666666667',
'1.0029786666666667']
set axis size 4.49341
4.49341
['.arrow', '0', '0', '0', '4.49341', '0', '0', '0.29956066666666664',
'1.1982426666666666']
set axis size 5.95788
5.95788
['.arrow', '0', '0', '0', '5.95788', '0', '0', '0.39719200000000005',
'1.5887680000000002']
set axis size 6.69011
6.69011
['.arrow', '0', '0', '0', '6.69011', '0', '0', '0.4460073333333333',
'1.7840293333333332']
set axis size 7.42234
7.42234
['.arrow', '0', '0', '0', '7.42234', '0', '0', '0.4948226666666667',
'1.9792906666666668']
set axis size 8.15458
8.15458
['.arrow', '0', '0', '0', '8.15458', '0', '0', '0.5436386666666666',
'2.1745546666666664']
set axis size 8.88681
8.88681
['.arrow', '0', '0', '0', '8.88681', '0', '0', '0.592454', '2.369816']
set axis size 9.61905
9.61905
['.arrow', '0', '0', '0', '9.61905', '0', '0', '0.64127', '2.56508']
set axis size 10.35128
10.35128
['.arrow', '0', '0', '0', '10.35128', '0', '0', '0.6900853333333333',
'2.7603413333333333']
set axis size 11.08352
11.08352
['.arrow', '0', '0', '0', '11.08352', '0', '0', '0.7389013333333333',
'2.955605333333333']
set axis size 11.81575
11.81575
['.arrow', '0', '0', '0', '11.81575', '0', '0', '0.7877166666666666',
'3.1508666666666665']
set axis size 11.81575
11.81575
['.arrow', '0', '0', '0', '11.81575', '0', '0', '0.7877166666666666',
'3.1508666666666665']
> artiax particles #1.2.1 axesSize 11.81575
> artiax particles #1.2.1 radius 2.2967
Opened YTC009_3_lam7_ts2_corrected.mrc as #1.1.1, grid size 682,960,234, pixel
15.8,15.8,15.8, shown at level 0.241, step 1, values float32
> artiax tomo #1.1.1 sliceDirection 0,0,1
> artiax view xy
> artiax tomo #1.1.1 pixelSize 15.828000423845308
> artiax view xy
[Repeated 2 time(s)]set axis size 237.42000635767963
237.42000635767963
['.arrow', '0', '0', '0', '237.42000635767963', '0', '0',
'15.828000423845308', '63.312001695381234']
> artiax particles #1.2.1 originScaleFactor 15.828000423845308
> artiax view xy
> artiax particles #1.2.1 transScaleFactor 1.0
> artiax view xy
[Repeated 1 time(s)]
> artiax hide axes
> artiax particles #1.2.1 color 0,46,86,100
> artiax particles #1.2.1 radius 38.17619
> artiax particles #1.2.1 radius 78.44908
> artiax particles #1.2.1 radius 85.03919
> open /Users/ramtinhosseini/Downloads/yeast_ribosomes/80S_ref.mrc
Opened 80S_ref.mrc as #2, grid size 36,36,36, pixel 15.8, shown at level
0.178, step 1, values float32
> artiax attach #2 toParticleList #1.2.1
Opened 80S_ref.mrc as #1.2.1.1.1, grid size 36,36,36, pixel 15.8, shown at
level 0.178, step 1, values float32
> volume #1.2.1.1.1 capFaces false
> artiax show #1.2.1 surfaces
> ui mousemode right "mark center"
[Repeated 1 time(s)]
> ui mousemode right "mark point"
> artiax view xy
> artiax particles #1.2.1 radius 140.68901
set axis size 197.8033
197.8033
['.arrow', '0', '0', '0', '197.8033', '0', '0', '13.186886666666668',
'52.74754666666667']
set axis size 192.67766
192.67766
['.arrow', '0', '0', '0', '192.67766', '0', '0', '12.845177333333334',
'51.380709333333336']
set axis size 186.81978
186.81978
['.arrow', '0', '0', '0', '186.81978', '0', '0', '12.454652000000001',
'49.818608000000005']
set axis size 181.69414
181.69414
['.arrow', '0', '0', '0', '181.69414', '0', '0', '12.112942666666667',
'48.45177066666667']
set axis size 175.83626
175.83626
['.arrow', '0', '0', '0', '175.83626', '0', '0', '11.722417333333334',
'46.88966933333334']
set axis size 169.97839
169.97839
['.arrow', '0', '0', '0', '169.97839', '0', '0', '11.331892666666667',
'45.32757066666667']
set axis size 163.38828
163.38828
['.arrow', '0', '0', '0', '163.38828', '0', '0', '10.892552', '43.570208']
set axis size 155.3337
155.3337
['.arrow', '0', '0', '0', '155.3337', '0', '0', '10.35558', '41.42232']
set axis size 148.01136
148.01136
['.arrow', '0', '0', '0', '148.01136', '0', '0', '9.867424', '39.469696']
set axis size 142.15348
142.15348
['.arrow', '0', '0', '0', '142.15348', '0', '0', '9.476898666666667',
'37.90759466666667']
set axis size 137.02784
137.02784
['.arrow', '0', '0', '0', '137.02784', '0', '0', '9.135189333333333',
'36.54075733333333']
set axis size 133.36667
133.36667
['.arrow', '0', '0', '0', '133.36667', '0', '0', '8.891111333333333',
'35.56444533333333']
set axis size 130.43773
130.43773
['.arrow', '0', '0', '0', '130.43773', '0', '0', '8.695848666666667',
'34.783394666666666']
set axis size 127.50879
127.50879
['.arrow', '0', '0', '0', '127.50879', '0', '0', '8.500586', '34.002344']
set axis size 124.57985
124.57985
['.arrow', '0', '0', '0', '124.57985', '0', '0', '8.305323333333332',
'33.22129333333333']
set axis size 122.38315
122.38315
['.arrow', '0', '0', '0', '122.38315', '0', '0', '8.158876666666666',
'32.635506666666664']
set axis size 119.45421
119.45421
['.arrow', '0', '0', '0', '119.45421', '0', '0', '7.963614000000001',
'31.854456000000003']
set axis size 117.25751
117.25751
['.arrow', '0', '0', '0', '117.25751', '0', '0', '7.817167333333333',
'31.26866933333333']
set axis size 115.06081
115.06081
['.arrow', '0', '0', '0', '115.06081', '0', '0', '7.670720666666667',
'30.682882666666668']
set axis size 112.13187
112.13187
['.arrow', '0', '0', '0', '112.13187', '0', '0', '7.475458000000001',
'29.901832000000002']
set axis size 109.93516
109.93516
['.arrow', '0', '0', '0', '109.93516', '0', '0', '7.329010666666666',
'29.316042666666664']
set axis size 107.73846
107.73846
['.arrow', '0', '0', '0', '107.73846', '0', '0', '7.182564', '28.730256']
set axis size 105.54176
105.54176
['.arrow', '0', '0', '0', '105.54176', '0', '0', '7.036117333333333',
'28.144469333333333']
set axis size 103.34505
103.34505
['.arrow', '0', '0', '0', '103.34505', '0', '0', '6.88967', '27.55868']
set axis size 101.88059
101.88059
['.arrow', '0', '0', '0', '101.88059', '0', '0', '6.792039333333333',
'27.168157333333333']
set axis size 101.14835
101.14835
['.arrow', '0', '0', '0', '101.14835', '0', '0', '6.743223333333333',
'26.97289333333333']
set axis size 100.41612
100.41612
['.arrow', '0', '0', '0', '100.41612', '0', '0', '6.694408', '26.777632']
set axis size 100.41612
100.41612
['.arrow', '0', '0', '0', '100.41612', '0', '0', '6.694408', '26.777632']
> artiax particles #1.2.1 axesSize 100.41612
set axis size 99.68388
99.68388
['.arrow', '0', '0', '0', '99.68388', '0', '0', '6.645592', '26.582368']
set axis size 98.21941
98.21941
['.arrow', '0', '0', '0', '98.21941', '0', '0', '6.5479606666666665',
'26.191842666666666']
set axis size 93.82601
93.82601
['.arrow', '0', '0', '0', '93.82601', '0', '0', '6.255067333333333',
'25.02026933333333']
set axis size 87.2359
87.2359
['.arrow', '0', '0', '0', '87.2359', '0', '0', '5.8157266666666665',
'23.262906666666666']
set axis size 79.91355
79.91355
['.arrow', '0', '0', '0', '79.91355', '0', '0', '5.32757', '21.31028']
set axis size 73.32344
73.32344
['.arrow', '0', '0', '0', '73.32344', '0', '0', '4.888229333333333',
'19.552917333333333']
set axis size 68.93004
68.93004
['.arrow', '0', '0', '0', '68.93004', '0', '0', '4.5953360000000005',
'18.381344000000002']
set axis size 61.60769
61.60769
['.arrow', '0', '0', '0', '61.60769', '0', '0', '4.107179333333333',
'16.42871733333333']
set axis size 59.41099
59.41099
['.arrow', '0', '0', '0', '59.41099', '0', '0', '3.9607326666666665',
'15.842930666666666']
set axis size 57.21429
57.21429
['.arrow', '0', '0', '0', '57.21429', '0', '0', '3.814286', '15.257144']
set axis size 56.48205
56.48205
['.arrow', '0', '0', '0', '56.48205', '0', '0', '3.76547', '15.06188']
set axis size 55.74982
55.74982
['.arrow', '0', '0', '0', '55.74982', '0', '0', '3.7166546666666664',
'14.866618666666666']
set axis size 55.01758
55.01758
['.arrow', '0', '0', '0', '55.01758', '0', '0', '3.667838666666667',
'14.671354666666668']
set axis size 54.28535
54.28535
['.arrow', '0', '0', '0', '54.28535', '0', '0', '3.6190233333333333',
'14.476093333333333']
set axis size 53.55311
53.55311
['.arrow', '0', '0', '0', '53.55311', '0', '0', '3.5702073333333333',
'14.280829333333333']
set axis size 52.08864
52.08864
['.arrow', '0', '0', '0', '52.08864', '0', '0', '3.4725759999999997',
'13.890303999999999']
set axis size 51.35641
51.35641
['.arrow', '0', '0', '0', '51.35641', '0', '0', '3.4237606666666665',
'13.695042666666666']
set axis size 49.89194
49.89194
['.arrow', '0', '0', '0', '49.89194', '0', '0', '3.3261293333333333',
'13.304517333333333']
set axis size 48.42747
48.42747
['.arrow', '0', '0', '0', '48.42747', '0', '0', '3.228498', '12.913992']
set axis size 46.23077
46.23077
['.arrow', '0', '0', '0', '46.23077', '0', '0', '3.0820513333333333',
'12.328205333333333']
set axis size 44.03407
44.03407
['.arrow', '0', '0', '0', '44.03407', '0', '0', '2.935604666666667',
'11.742418666666667']
set axis size 41.83736
41.83736
['.arrow', '0', '0', '0', '41.83736', '0', '0', '2.7891573333333333',
'11.156629333333333']
set axis size 40.37289
40.37289
['.arrow', '0', '0', '0', '40.37289', '0', '0', '2.691526', '10.766104']
set axis size 38.90842
38.90842
['.arrow', '0', '0', '0', '38.90842', '0', '0', '2.5938946666666665',
'10.375578666666666']
set axis size 36.71172
36.71172
['.arrow', '0', '0', '0', '36.71172', '0', '0', '2.447448', '9.789792']
set axis size 35.24725
35.24725
['.arrow', '0', '0', '0', '35.24725', '0', '0', '2.349816666666667',
'9.399266666666668']
set axis size 33.05055
33.05055
['.arrow', '0', '0', '0', '33.05055', '0', '0', '2.20337', '8.81348']
set axis size 30.85385
30.85385
['.arrow', '0', '0', '0', '30.85385', '0', '0', '2.056923333333333',
'8.227693333333333']
set axis size 28.65714
28.65714
['.arrow', '0', '0', '0', '28.65714', '0', '0', '1.9104759999999998',
'7.641903999999999']
set axis size 27.92491
27.92491
['.arrow', '0', '0', '0', '27.92491', '0', '0', '1.8616606666666666',
'7.4466426666666665']
set axis size 27.92491
27.92491
['.arrow', '0', '0', '0', '27.92491', '0', '0', '1.8616606666666666',
'7.4466426666666665']
> artiax particles #1.2.1 axesSize 27.92491
set axis size 26.46044
26.46044
['.arrow', '0', '0', '0', '26.46044', '0', '0', '1.7640293333333332',
'7.056117333333333']
set axis size 27.19267
27.19267
['.arrow', '0', '0', '0', '27.19267', '0', '0', '1.8128446666666667',
'7.251378666666667']
set axis size 30.12161
30.12161
['.arrow', '0', '0', '0', '30.12161', '0', '0', '2.0081073333333332',
'8.032429333333333']
set axis size 34.51502
34.51502
['.arrow', '0', '0', '0', '34.51502', '0', '0', '2.3010013333333332',
'9.204005333333333']
set axis size 41.10513
41.10513
['.arrow', '0', '0', '0', '41.10513', '0', '0', '2.740342', '10.961368']
set axis size 48.42747
48.42747
['.arrow', '0', '0', '0', '48.42747', '0', '0', '3.228498', '12.913992']
set axis size 59.41099
59.41099
['.arrow', '0', '0', '0', '59.41099', '0', '0', '3.9607326666666665',
'15.842930666666666']
set axis size 72.59121
72.59121
['.arrow', '0', '0', '0', '72.59121', '0', '0', '4.8394140000000005',
'19.357656000000002']
set axis size 84.30696
84.30696
['.arrow', '0', '0', '0', '84.30696', '0', '0', '5.620464', '22.481856']
set axis size 96.02271
96.02271
['.arrow', '0', '0', '0', '96.02271', '0', '0', '6.401514000000001',
'25.606056000000002']
set axis size 107.00623
107.00623
['.arrow', '0', '0', '0', '107.00623', '0', '0', '7.1337486666666665',
'28.534994666666666']
set axis size 115.79304
115.79304
['.arrow', '0', '0', '0', '115.79304', '0', '0', '7.719536000000001',
'30.878144000000002']
set axis size 122.38315
122.38315
['.arrow', '0', '0', '0', '122.38315', '0', '0', '8.158876666666666',
'32.635506666666664']
set axis size 126.77656
126.77656
['.arrow', '0', '0', '0', '126.77656', '0', '0', '8.451770666666667',
'33.807082666666666']
set axis size 130.43773
130.43773
['.arrow', '0', '0', '0', '130.43773', '0', '0', '8.695848666666667',
'34.783394666666666']
set axis size 133.36667
133.36667
['.arrow', '0', '0', '0', '133.36667', '0', '0', '8.891111333333333',
'35.56444533333333']
set axis size 134.0989
134.0989
['.arrow', '0', '0', '0', '134.0989', '0', '0', '8.939926666666667',
'35.759706666666666']
set axis size 134.83114
134.83114
['.arrow', '0', '0', '0', '134.83114', '0', '0', '8.988742666666667',
'35.95497066666667']
set axis size 134.83114
134.83114
['.arrow', '0', '0', '0', '134.83114', '0', '0', '8.988742666666667',
'35.95497066666667']
> artiax particles #1.2.1 axesSize 134.83114
set axis size 139.22454
139.22454
['.arrow', '0', '0', '0', '139.22454', '0', '0', '9.281635999999999',
'37.126543999999996']
set axis size 139.95678
139.95678
['.arrow', '0', '0', '0', '139.95678', '0', '0', '9.330452000000001',
'37.321808000000004']
set axis size 140.68901
140.68901
['.arrow', '0', '0', '0', '140.68901', '0', '0', '9.379267333333333',
'37.51706933333333']
set axis size 142.88571
142.88571
['.arrow', '0', '0', '0', '142.88571', '0', '0', '9.525713999999999',
'38.102855999999996']
set axis size 145.08242
145.08242
['.arrow', '0', '0', '0', '145.08242', '0', '0', '9.672161333333333',
'38.688645333333334']
set axis size 149.47582
149.47582
['.arrow', '0', '0', '0', '149.47582', '0', '0', '9.965054666666667',
'39.86021866666667']
set axis size 153.86923
153.86923
['.arrow', '0', '0', '0', '153.86923', '0', '0', '10.257948666666666',
'41.03179466666666']
set axis size 158.99487
158.99487
['.arrow', '0', '0', '0', '158.99487', '0', '0', '10.599658', '42.398632']
set axis size 164.85275
164.85275
['.arrow', '0', '0', '0', '164.85275', '0', '0', '10.990183333333333',
'43.96073333333333']
set axis size 169.97839
169.97839
['.arrow', '0', '0', '0', '169.97839', '0', '0', '11.331892666666667',
'45.32757066666667']
set axis size 173.63956
173.63956
['.arrow', '0', '0', '0', '173.63956', '0', '0', '11.575970666666667',
'46.30388266666667']
set axis size 176.5685
176.5685
['.arrow', '0', '0', '0', '176.5685', '0', '0', '11.771233333333333',
'47.08493333333333']
set axis size 178.03297
178.03297
['.arrow', '0', '0', '0', '178.03297', '0', '0', '11.868864666666667',
'47.47545866666667']
set axis size 178.7652
178.7652
['.arrow', '0', '0', '0', '178.7652', '0', '0', '11.917679999999999',
'47.670719999999996']
set axis size 178.7652
178.7652
['.arrow', '0', '0', '0', '178.7652', '0', '0', '11.917679999999999',
'47.670719999999996']
> artiax particles #1.2.1 axesSize 178.7652
set axis size 180.9619
180.9619
['.arrow', '0', '0', '0', '180.9619', '0', '0', '12.064126666666668',
'48.256506666666674']
set axis size 183.15861
183.15861
['.arrow', '0', '0', '0', '183.15861', '0', '0', '12.210574000000001',
'48.842296000000005']
set axis size 182.42637
182.42637
['.arrow', '0', '0', '0', '182.42637', '0', '0', '12.161757999999999',
'48.647031999999996']
set axis size 179.49744
179.49744
['.arrow', '0', '0', '0', '179.49744', '0', '0', '11.966496000000001',
'47.865984000000005']
set axis size 174.37179
174.37179
['.arrow', '0', '0', '0', '174.37179', '0', '0', '11.624786', '46.499144']
set axis size 167.04945
167.04945
['.arrow', '0', '0', '0', '167.04945', '0', '0', '11.13663', '44.54652']
set axis size 158.99487
158.99487
['.arrow', '0', '0', '0', '158.99487', '0', '0', '10.599658', '42.398632']
set axis size 150.94029
150.94029
['.arrow', '0', '0', '0', '150.94029', '0', '0', '10.062686000000001',
'40.250744000000005']
set axis size 142.88571
142.88571
['.arrow', '0', '0', '0', '142.88571', '0', '0', '9.525713999999999',
'38.102855999999996']
set axis size 138.49231
138.49231
['.arrow', '0', '0', '0', '138.49231', '0', '0', '9.232820666666667',
'36.93128266666667']
set axis size 134.0989
134.0989
['.arrow', '0', '0', '0', '134.0989', '0', '0', '8.939926666666667',
'35.759706666666666']
set axis size 128.97326
128.97326
['.arrow', '0', '0', '0', '128.97326', '0', '0', '8.598217333333334',
'34.39286933333334']
set axis size 125.31209
125.31209
['.arrow', '0', '0', '0', '125.31209', '0', '0', '8.354139333333332',
'33.41655733333333']
set axis size 122.38315
122.38315
['.arrow', '0', '0', '0', '122.38315', '0', '0', '8.158876666666666',
'32.635506666666664']
set axis size 119.45421
119.45421
['.arrow', '0', '0', '0', '119.45421', '0', '0', '7.963614000000001',
'31.854456000000003']
set axis size 117.98974
117.98974
['.arrow', '0', '0', '0', '117.98974', '0', '0', '7.865982666666667',
'31.463930666666666']
set axis size 116.52527
116.52527
['.arrow', '0', '0', '0', '116.52527', '0', '0', '7.768351333333333',
'31.073405333333334']
set axis size 115.79304
115.79304
['.arrow', '0', '0', '0', '115.79304', '0', '0', '7.719536000000001',
'30.878144000000002']
set axis size 115.06081
115.06081
['.arrow', '0', '0', '0', '115.06081', '0', '0', '7.670720666666667',
'30.682882666666668']
set axis size 114.32857
114.32857
['.arrow', '0', '0', '0', '114.32857', '0', '0', '7.6219046666666666',
'30.487618666666666']
set axis size 113.59634
113.59634
['.arrow', '0', '0', '0', '113.59634', '0', '0', '7.573089333333333',
'30.29235733333333']
set axis size 112.8641
112.8641
['.arrow', '0', '0', '0', '112.8641', '0', '0', '7.5242733333333325',
'30.09709333333333']
set axis size 112.13187
112.13187
['.arrow', '0', '0', '0', '112.13187', '0', '0', '7.475458000000001',
'29.901832000000002']
set axis size 111.39963
111.39963
['.arrow', '0', '0', '0', '111.39963', '0', '0', '7.426642', '29.706568']
set axis size 109.93516
109.93516
['.arrow', '0', '0', '0', '109.93516', '0', '0', '7.329010666666666',
'29.316042666666664']
set axis size 106.27399
106.27399
['.arrow', '0', '0', '0', '106.27399', '0', '0', '7.084932666666666',
'28.339730666666664']
set axis size 100.41612
100.41612
['.arrow', '0', '0', '0', '100.41612', '0', '0', '6.694408', '26.777632']
set axis size 94.55824
94.55824
['.arrow', '0', '0', '0', '94.55824', '0', '0', '6.3038826666666665',
'25.215530666666666']
set axis size 88.70037
88.70037
['.arrow', '0', '0', '0', '88.70037', '0', '0', '5.913358000000001',
'23.653432000000002']
set axis size 83.57473
83.57473
['.arrow', '0', '0', '0', '83.57473', '0', '0', '5.5716486666666665',
'22.286594666666666']
set axis size 79.91355
79.91355
['.arrow', '0', '0', '0', '79.91355', '0', '0', '5.32757', '21.31028']
set axis size 77.71685
77.71685
['.arrow', '0', '0', '0', '77.71685', '0', '0', '5.181123333333333',
'20.72449333333333']
set axis size 76.25238
76.25238
['.arrow', '0', '0', '0', '76.25238', '0', '0', '5.083492000000001',
'20.333968000000002']
set axis size 74.05568
74.05568
['.arrow', '0', '0', '0', '74.05568', '0', '0', '4.937045333333333',
'19.74818133333333']
set axis size 73.32344
73.32344
['.arrow', '0', '0', '0', '73.32344', '0', '0', '4.888229333333333',
'19.552917333333333']
set axis size 72.59121
72.59121
['.arrow', '0', '0', '0', '72.59121', '0', '0', '4.8394140000000005',
'19.357656000000002']
set axis size 72.59121
72.59121
['.arrow', '0', '0', '0', '72.59121', '0', '0', '4.8394140000000005',
'19.357656000000002']
> artiax particles #1.2.1 axesSize 72.59121
> artiax particles #1.2.1 radius 63.07216
> artiax view yz
> artiax view xz
> artiax view xy
> artiax tomo #1.1.1 slice 102
> artiax show axes
> artiax hide axes
> artiax hide surfaces
> ui mousemode right "delete picked particle"
[Repeated 1 time(s)]
> ui mousemode right translate
> ui mousemode right pivot
> ui mousemode right select
> artiax view xy
> ui mousemode right "mark surface"
> ui mousemode right "mark maximum"
> ui mousemode right "mark plane"
> artiax view xy
Opened YTC009_3_lam7_ts2.mrc_15.83Apx.mrc as #1.1.1, grid size 682,960,234,
pixel 15.8,15.8,15.8, shown at level 0.0434, step 1, values float32
> artiax tomo #1.1.1 sliceDirection 0,0,1
> artiax view xy
Opened YTC009_3_lam8_ts2_corrected.mrc as #1.1.1, grid size 682,960,234, pixel
15.8,15.8,15.8, shown at level 0.229, step 1, values float32
> artiax tomo #1.1.1 sliceDirection 0,0,1
> artiax view xy
[Repeated 1 time(s)]
> artiax view xz
> artiax view yz
> artiax view xz
> artiax view xy
> artiax view xz
> artiax particles #1.2.1 radius 49.89194
> artiax view xz
> open
> /Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam8_ts2_corrected_80S_ref.star
> format star
Traceback (most recent call last):
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/chimerax/artiax/widgets/ArtiaxOpenDialog.py", line 66, in _qt_safe
run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + (""
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 119, in cmd_open
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/commands/cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 194, in provider_open
models, status = collated_open(session, None, [data], data_format,
_add_models,
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 464, in collated_open
return remember_data_format()
File
"/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/open_command/cmd.py", line 435, in remember_data_format
models, status = func(*func_args, **func_kw)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/chimerax/artiax/io/formats.py", line 25, in open
return open_particle_list(session, data, file_name, format_name=self.name,
from_chimx=True)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/chimerax/artiax/io/io.py", line 35, in open_particle_list
data = formats[format_name].particle_data(session, file_name, oripix=1,
trapix=1, additional_files=additional_files)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/chimerax/artiax/io/RELION/RELIONParticleData.py", line 120, in
__init__
super().__init__(session, file_name, oripix=oripix, trapix=trapix,
additional_files=additional_files)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/chimerax/artiax/io/ParticleData.py", line 441, in __init__
self.read_file()
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/chimerax/artiax/io/RELION/RELIONParticleData.py", line 123, in
read_file
content = starfile.read(self.file_name, always_dict=True)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/starfile/functions.py", line 24, in read
star = StarParser(filename, read_n_blocks=read_n_blocks)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/starfile/parser.py", line 30, in __init__
self.parse_file()
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/starfile/parser.py", line 38, in parse_file
self._parse_data_block()
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/starfile/parser.py", line 54, in _parse_data_block
self._parse_loop_block()
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/starfile/parser.py", line 77, in _parse_loop_block
df = self._parse_loop_data()
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/starfile/parser.py", line 177, in _parse_loop_data
df = pd.read_csv(
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/pandas/io/parsers/readers.py", line 912, in read_csv
return _read(filepath_or_buffer, kwds)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/pandas/io/parsers/readers.py", line 583, in _read
return parser.read(nrows)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/pandas/io/parsers/readers.py", line 1704, in read
) = self._engine.read( # type: ignore[attr-defined]
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/pandas/io/parsers/c_parser_wrapper.py", line 234, in read
chunks = self._reader.read_low_memory(nrows)
File "pandas/_libs/parsers.pyx", line 814, in
pandas._libs.parsers.TextReader.read_low_memory
File "pandas/_libs/parsers.pyx", line 875, in
pandas._libs.parsers.TextReader._read_rows
File "pandas/_libs/parsers.pyx", line 850, in
pandas._libs.parsers.TextReader._tokenize_rows
File "pandas/_libs/parsers.pyx", line 861, in
pandas._libs.parsers.TextReader._check_tokenize_status
File "pandas/_libs/parsers.pyx", line 2029, in
pandas._libs.parsers.raise_parser_error
pandas.errors.ParserError: Error tokenizing data. C error: Expected 1 fields
in line 12, saw 10
pandas.errors.ParserError: Error tokenizing data. C error: Expected 1 fields
in line 12, saw 10
File "pandas/_libs/parsers.pyx", line 2029, in
pandas._libs.parsers.raise_parser_error
See log for complete Python traceback.
> open
> /Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam8_ts2_corrected_80S_ref.star
> format star
Summary of feedback from opening
/Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam8_ts2_corrected_80S_ref.star
---
notes | 15
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']
Opened Particle list YTC009_3_lam8_ts2_corrected_80S_ref.star with 2216
particles.
set axis size 237.0
237.0
['.arrow', '0', '0', '0', '237.0', '0', '0', '15.8', '63.2']
> artiax particles #1.2.2 originScaleFactor 15.8
> artiax view xy
> hide #!1.1.1 models
> artiax hide axes
> hide #!1.2.2 models
> show #!1.2.2 models
> hide #!1.2.1 models
> hide #!1.2.2 models
> open
> /Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref.star
> format star
Summary of feedback from opening
/Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref.star
---
notes | 15
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']
Opened Particle list YTC009_3_lam7_ts2_corrected_80S_ref.star with 2287
particles.
set axis size 237.0
237.0
['.arrow', '0', '0', '0', '237.0', '0', '0', '15.8', '63.2']
> artiax particles #1.2.1 originScaleFactor 15.8
> artiax view xy
> open
> /Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref.star
> format star
Summary of feedback from opening
/Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref.star
---
notes | 15
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']
Opened Particle list YTC009_3_lam7_ts2_corrected_80S_ref.star with 2287
particles.
> artiax tomo #1.1.1 pixelSize 15.828000423845308
> artiax view xy
set axis size 237.42000635767963
237.42000635767963
['.arrow', '0', '0', '0', '237.42000635767963', '0', '0',
'15.828000423845308', '63.312001695381234']
> artiax particles #1.2.2 originScaleFactor 15.828000423845308
> artiax view xy
> artiax hide axes
[Repeated 2 time(s)]
> show #!1.1.1 models
Opened YTC009_3_lam7_ts2_corrected.mrc as #1.1.1, grid size 682,960,234, pixel
15.8,15.8,15.8, shown at level 0.241, step 1, values float32
> artiax tomo #1.1.1 sliceDirection 0,0,1
> artiax view xy
[Repeated 2 time(s)]
> hide #!1.2.2 models
> show #!1.2.2 models
> hide #!1.2.1 models
> volume #1.1.1 step 16
> volume #1.1.1 step 2
> volume #1.1.1 step 4
> volume #1.1.1 step 1
> volume #1.1.1 style surface
> volume #1.1.1 style image imageMode "full region"
> volume #1.1.1 style mesh
> volume #1.1.1 style image region 0,0,116,681,959,116 step 1 showOutlineBox
> true
> artiax view yz
> artiax view xz
> artiax view yz
> artiax view xz
> artiax view xy
2287 atoms, 2287 residues, atom rlnCoordinateX range 10 to 671
[Repeated 1 time(s)]
> artiax colormap #1.2.2.3 rlnCoordinateX palette redgreen minValue 10.0
> maxValue 671.0 transparency 0.0
> artiax particles #1.2.2 color 0,46,86,100
2287 atoms, 2287 residues, atom rlnCoordinateX range 10 to 671
[Repeated 1 time(s)]
> artiax colormap #1.2.2.3 rlnCoordinateX palette redgreen minValue 10.0
> maxValue 671.0 transparency 0.0
2287 atoms, 2287 residues, atom rlnGroupNumber range 0 to 0
[Repeated 1 time(s)]
> artiax colormap #1.2.2.3 rlnGroupNumber palette redgreen minValue 0.0
> maxValue 0.0 transparency 0.0
> artiax tomo #1.1.1 slice 1
[Repeated 1 time(s)]
> artiax tomo #1.1.1 slice 0
[Repeated 2 time(s)]
> artiax tomo #1.1.1 slice 1
[Repeated 7 time(s)]
> hide #!1.1.1 models
> show #!1.1.1 models
> hide #!1.1.1 models
> show #!1.1.1 models
> artiax tomo #1.1.1 pixelSize 15.828000423845308
> artiax view xy
> artiax tomo #1.1.1 pixelSize 15.828000423845308
> artiax view xy
> artiax tomo #1.1.1 pixelSize 15.828000423845308
> artiax view xy
> artiax tomo #1.1.1 pixelSize 15.828000423845308
> artiax view xy
> artiax tomo #1.1.1 slice 1
[Repeated 2 time(s)]
> artiax view xy
[Repeated 5 time(s)]
> artiax start
> artiax flip y
> artiax flip x
> ui mousemode right "mark point"
> open help:user/artiax_index.html
Opened help:user/artiax_index.html
> artiax start
[Repeated 1 time(s)]
> close session
> artiax start
Using preset: ArtiaX / Artiax Default
Preset expands to these ChimeraX commands:
set bgColor black
lighting depthCue false
camera ortho
Opened YTC009_3_lam7_ts2_corrected.mrc as #1.1.1, grid size 682,960,234, pixel
15.8,15.8,15.8, shown at level 0.241, step 1, values float32
> artiax tomo #1.1.1 sliceDirection 0,0,1
> artiax view xy
> artiax tomo #1.1.1 contrastWidth 2.89391
/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/graphics/opengl.py:1026: RuntimeWarning: divide by zero
encountered in double_scalars
p.set_vector2('colormap_range', (s*v0, 1/(s*(v1-v0))))
> artiax tomo #1.1.1 contrastWidth 0.6755
> artiax tomo #1.1.1 contrastCenter -0.26345
[Repeated 1 time(s)]
> artiax tomo #1.1.1 contrastCenter -0.1884
> artiax tomo #1.1.1 contrastCenter -0.03829
> artiax tomo #1.1.1 contrastCenter -0.26345
> artiax tomo #1.1.1 slice 119
> artiax tomo #1.1.1 slice 118
> open
> /Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref.star
> format star
Summary of feedback from opening
/Users/ramtinhosseini/Downloads/yeast_ribosomes/coordinates/YTC009_3_lam7_ts2_corrected_80S_ref.star
---
notes | 15
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']
Opened Particle list YTC009_3_lam7_ts2_corrected_80S_ref.star with 2287
particles.
> artiax tomo #1.1.1 pixelSize 15.828000423845308
> artiax view xy
set axis size 237.42000635767963
237.42000635767963
['.arrow', '0', '0', '0', '237.42000635767963', '0', '0',
'15.828000423845308', '63.312001695381234']
> artiax particles #1.2.1 originScaleFactor 15.828000423845308
> artiax view xy
> artiax hide axes
> artiax tomo #1.1.1 contrastCenter -0.78884
> artiax tomo #1.1.1 contrastWidth 3.15234
> artiax tomo #1.1.1 contrastCenter -0.33851
> artiax tomo #1.1.1 contrastWidth 6.07952
> artiax tomo #1.1.1 sliceDirection 0.0,0.0,0.0
Traceback (most recent call last):
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
See log for complete Python traceback.
QBackingStore::endPaint() called with active painter; did you forget to
destroy it or call QPainter::end() on it?
Traceback (most recent call last):
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
See log for complete Python traceback.
Traceback (most recent call last):
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
See log for complete Python traceback.
QBackingStore::endPaint() called with active painter; did you forget to
destroy it or call QPainter::end() on it?
Traceback (most recent call last):
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event
self._updateHoverControl(_event_position(ev))
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl
if lastHoverControl != self._newHoverControl(pos) and doesHover:
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl
opt = self._styleOption
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
See log for complete Python traceback.
Traceback (most recent call last):
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event
self._updateHoverControl(_event_position(ev))
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl
if lastHoverControl != self._newHoverControl(pos) and doesHover:
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl
opt = self._styleOption
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
See log for complete Python traceback.
Traceback (most recent call last):
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event
self._updateHoverControl(_event_position(ev))
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl
if lastHoverControl != self._newHoverControl(pos) and doesHover:
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl
opt = self._styleOption
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
See log for complete Python traceback.
Traceback (most recent call last):
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event
self._updateHoverControl(_event_position(ev))
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl
if lastHoverControl != self._newHoverControl(pos) and doesHover:
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl
opt = self._styleOption
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
See log for complete Python traceback.
Traceback (most recent call last):
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event
self._updateHoverControl(_event_position(ev))
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl
if lastHoverControl != self._newHoverControl(pos) and doesHover:
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl
opt = self._styleOption
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
See log for complete Python traceback.
Traceback (most recent call last):
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event
self._updateHoverControl(_event_position(ev))
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl
if lastHoverControl != self._newHoverControl(pos) and doesHover:
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl
opt = self._styleOption
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
See log for complete Python traceback.
Traceback (most recent call last):
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event
self._updateHoverControl(_event_position(ev))
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl
if lastHoverControl != self._newHoverControl(pos) and doesHover:
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl
opt = self._styleOption
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
See log for complete Python traceback.
Traceback (most recent call last):
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 215, in event
self._updateHoverControl(_event_position(ev))
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 366, in _updateHoverControl
if lastHoverControl != self._newHoverControl(pos) and doesHover:
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 373, in _newHoverControl
opt = self._styleOption
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
See log for complete Python traceback.
Traceback (most recent call last):
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
See log for complete Python traceback.
Traceback (most recent call last):
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 290, in paintEvent
opt = self._styleOption
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 359, in _styleOption
self.initStyleOption(opt)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 206, in initStyleOption
option.tickInterval = self._to_qinteger_space(self._tickInterval)
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
ZeroDivisionError: float division by zero
ZeroDivisionError: float division by zero
File "/Users/ramtinhosseini/Library/Application Support/ChimeraX/1.6/site-
packages/superqt/sliders/_generic_slider.py", line 338, in _to_qinteger_space
return int(min(QOVERFLOW, val / (self._maximum - self._minimum) * _max))
See log for complete Python traceback.
QBackingStore::endPaint() called with active painter; did you forget to
destroy it or call QPainter::end() on it?
[Repeated 1 time(s)]
OpenGL version: 4.1 ATI-4.10.12
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro16,1
Processor Name: 8-Core Intel Core i9
Processor Speed: 2.3 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 256 KB
L3 Cache: 16 MB
Hyper-Threading Technology: Enabled
Memory: 16 GB
System Firmware Version: 1968.100.17.0.0 (iBridge: 20.16.4252.0.0,0)
OS Loader Version: 577~129
Software:
System Software Overview:
System Version: macOS 13.3 (22E252)
Kernel Version: Darwin 22.4.0
Time since boot: 1 day, 5 hours, 7 minutes
Graphics/Displays:
Intel UHD Graphics 630:
Chipset Model: Intel UHD Graphics 630
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x3e9b
Revision ID: 0x0002
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
AMD Radeon Pro 5500M:
Chipset Model: AMD Radeon Pro 5500M
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 4 GB
Vendor: AMD (0x1002)
Device ID: 0x7340
Revision ID: 0x0040
ROM Revision: 113-D3220E-190
VBIOS Version: 113-D32206U1-019
Option ROM Version: 113-D32206U1-019
EFI Driver Version: 01.A1.190
Automatic Graphics Switching: Supported
gMux Version: 5.0.0
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 3072 x 1920 Retina
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-ArtiaX: 0.3
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
geomdl: 5.3.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
pandas: 2.0.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
starfile: 0.4.12
superqt: 0.5.3
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (1)
comment:1 by , 2 years ago
| Component: | Unassigned → Third Party |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → ArtiaX: slider: float division by zero |
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