Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Current thread 0x0000000117462600 (most recent call first):
  File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
  File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
  File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in 
  File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
  File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main


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{
  "uptime" : 230000,
  "procLaunch" : "2023-09-09 15:05:15.9397 -0700",
  "procRole" : "Background",
  "version" : 2,
  "userID" : 501,
  "deployVersion" : 210,
  "modelCode" : "MacBookPro16,2",
  "procStartAbsTime" : 90308702917610,
  "coalitionID" : 20512,
  "osVersion" : {
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    "build" : "21D62",
    "releaseType" : "User"
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  "captureTime" : "2023-09-11 08:39:50.3776 -0700",
  "incident" : "6662F9D1-61EC-43F4-A53B-83C4F2F27065",
  "bug_type" : "309",
  "pid" : 49578,
  "procExitAbsTime" : 234934738906247,
  "cpuType" : "X86-64",
  "procName" : "ChimeraX",
  "procPath" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.6.1","CFBundleVersion":"1.6.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
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  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "708048E2-2049-C5D8-7FD8-3A69D0587290",
  "wakeTime" : 4,
  "bridgeVersion" : {"build":"19P744","train":"6.2"},
  "sleepWakeUUID" : "A5732218-BC0C-4908-89B3-86FC08B65CD7",
  "sip" : "enabled",
  "vmRegionInfo" : "0x18 is not in any region.  Bytes before following region: 4473704424\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      UNUSED SPACE AT START\n--->  \n      __TEXT                      10aa75000-10aa76000    [    4K] r-x\/r-x SM=COW  ...acOS\/ChimeraX",
  "isCorpse" : 1,
  "exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
  "ktriageinfo" : "VM - Compressor failed a blocking pager_get\n",
  "vmregioninfo" : "0x18 is not in any region.  Bytes before following region: 4473704424\n      REGION TYPE                    START - END         [ VSIZE] PRT\/MAX SHRMOD  REGION DETAIL\n      UNUSED SPACE AT START\n--->  \n      __TEXT                      10aa75000-10aa76000    [    4K] r-x\/r-x SM=COW  ...acOS\/ChimeraX",
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  "vmSummary" : "ReadOnly portion of Libraries: Total=1.4G resident=0K(0%) swapped_out_or_unallocated=1.4G(100%)\nWritable regions: Total=2.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.0G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               768K        6 \nActivity Tracing                   256K        1 \nCG backing stores                 5760K       16 \nCG image                           536K       59 \nColorSync                          240K       28 \nCoreAnimation                     50.7M      175 \nCoreGraphics                        16K        3 \nCoreUI image data                 7204K       79 \nFoundation                          36K        2 \nIOKit                             15.5M        2 \nKernel Alloc Once                    8K        1 \nMALLOC                             1.3G      638 \nMALLOC guard page                   32K        8 \nMALLOC_LARGE (reserved)            384K        1         reserved VM address space (unallocated)\nMALLOC_NANO (reserved)           256.0M        1         reserved VM address space (unallocated)\nMach message                        16K        3 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                        136K       34 \nStack                            160.3M       35 \nStack Guard                       56.0M        1 \nVM_ALLOCATE                      235.5M      157 \n__DATA                            44.2M      669 \n__DATA_CONST                      31.7M      344 \n__DATA_DIRTY                      1641K      218 \n__FONT_DATA                          4K        1 \n__GLSLBUILTINS                    5176K        1 \n__LINKEDIT                       671.7M      149 \n__OBJC_RO                         81.8M        1 \n__OBJC_RW                         3136K        2 \n__TEXT                           799.4M      672 \n__UNICODE                          588K        1 \ndyld private memory               1056K        3 \nmapped file                      202.9M       54 \nshared memory                     3032K       36 \n===========                     =======  ======= \nTOTAL                              3.9G     3405 \nTOTAL, minus reserved VM space     3.6G     3405 \n",
  "legacyInfo" : {
  "threadTriggered" : {
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  "trialInfo" : {
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}
===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/fli05@amgen.com/Library/CloudStorage/OneDrive-
> Amgen/Projects/Postdoc/HGSNAT/BoyangStructure/CoAProduct_P130J67/cryosparc_P130_J67_008_volume_map_sharp.mrc

Opened cryosparc_P130_J67_008_volume_map_sharp.mrc as #1, grid size
432,432,432, pixel 0.813, shown at level 0.0404, step 2, values float32  

> volume #1 step 1

> volume #1 level 0.2751

> volume #1 color #b2b2b256

> open
> /Users/fli05@amgen.com/Documents/Phenix_old/HGSNAT_ActylCoA/RealSpaceRefine_12/Coot_Fei-
> coot-12_real_space_refined_012_edit.pdb

Summary of feedback from opening
/Users/fli05@amgen.com/Documents/Phenix_old/HGSNAT_ActylCoA/RealSpaceRefine_12/Coot_Fei-
coot-12_real_space_refined_012_edit.pdb  
---  
warnings | Start residue of secondary structure not found: SHEET 8 8 1 SER A
175 GLU A 185 0  
Bad residue range for secondary structure: SHEET 9 9 1 GLN B 81 ASN A 88 0  
Bad residue range for secondary structure: SHEET 10 10 1 LEU B 95 SER A 101 0  
Bad residue range for secondary structure: SHEET 11 11 1 GLN B 110 VAL A 115 0  
Bad residue range for secondary structure: SHEET 12 12 1 SER B 125 SER A 132 0  
Bad residue range for secondary structure: SHEET 13 13 1 SER B 137 ASP A 143 0  
2 messages similar to the above omitted  
Start residue of secondary structure not found: SHEET 16 16 1 SER B 175 GLU A
185 0  
  
Chain information for Coot_Fei-coot-12_real_space_refined_012_edit.pdb #2  
---  
Chain | Description  
A | No description available  
B | No description available  
  

> select /A:208

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

170 atoms, 171 bonds, 25 residues, 1 model selected  

> select up

1148 atoms, 1174 bonds, 153 residues, 1 model selected  

> select up

4361 atoms, 4491 bonds, 553 residues, 1 model selected  

> select up

8615 atoms, 8868 bonds, 1098 residues, 1 model selected  

> ui mousemode right "translate selected models"

> view matrix models #2,1,0,0,-2.1046,0,1,0,1.2981,0,0,1,-1.7001

> ui tool show "Fit in Map"

> fitmap #2 inMap #1

Fit molecule Coot_Fei-coot-12_real_space_refined_012_edit.pdb (#2) to map
cryosparc_P130_J67_008_volume_map_sharp.mrc (#1) using 8615 atoms  
average map value = 0.08482, steps = 92  
shifted from previous position = 1.9  
rotated from previous position = 0.389 degrees  
atoms outside contour = 6936, contour level = 0.27514  
  
Position of Coot_Fei-coot-12_real_space_refined_012_edit.pdb (#2) relative to
cryosparc_P130_J67_008_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99997698 -0.00269419 0.00622701 -3.55319933  
0.00269415 0.99999637 0.00001489 1.66498344  
-0.00622703 0.00000189 0.99998061 -2.10998207  
Axis -0.00095809 0.91778132 0.39708505  
Axis point -384.84735319 0.00000000 569.08167256  
Rotation angle (degrees) 0.38874681  
Shift along axis 0.69365263  
  

> view matrix models
> #2,0.99998,-0.0026942,0.006227,-3.582,0.0026941,1,1.4889e-05,-2.311,-0.006227,1.8879e-06,0.99998,0.23463

> fitmap #2 inMap #1

Fit molecule Coot_Fei-coot-12_real_space_refined_012_edit.pdb (#2) to map
cryosparc_P130_J67_008_volume_map_sharp.mrc (#1) using 8615 atoms  
average map value = 0.435, steps = 56  
shifted from previous position = 2.73  
rotated from previous position = 0.309 degrees  
atoms outside contour = 3116, contour level = 0.27514  
  
Position of Coot_Fei-coot-12_real_space_refined_012_edit.pdb (#2) relative to
cryosparc_P130_J67_008_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99999227 -0.00312062 0.00239020 -3.05911280  
0.00311157 0.99998801 0.00378233 -4.34423537  
-0.00240198 -0.00377486 0.99998999 -2.14970990  
Axis -0.69301032 0.43945281 0.57150496  
Axis point 0.00000000 -418.13769767 1028.99749445  
Rotation angle (degrees) 0.31240321  
Shift along axis -1.01765959  
  

> select clear

> select /A:197

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select up

170 atoms, 171 bonds, 25 residues, 1 model selected  

> select up

1148 atoms, 1174 bonds, 153 residues, 1 model selected  

> select up

4361 atoms, 4491 bonds, 553 residues, 1 model selected  

> select up

8615 atoms, 8868 bonds, 1098 residues, 1 model selected  

> show sel atoms

> select clear

> ui windowfill toggle

> open
> /Users/fli05@amgen.com/Downloads/cryosparc_P139_J101_class_00_final_volume.mrc

Opened cryosparc_P139_J101_class_00_final_volume.mrc as #3, grid size
128,128,128, pixel 2.03, shown at level 0.0749, step 1, values float32  

> volume #3 level 0.297

> close #3

> open
> /Users/fli05@amgen.com/Downloads/cryosparc_P139_J101_class_01_final_volume.mrc

Opened cryosparc_P139_J101_class_01_final_volume.mrc as #3, grid size
128,128,128, pixel 2.03, shown at level 0.0764, step 1, values float32  

> volume #3 level 0.1619

> close #3

> ui windowfill toggle

> open
> /Users/fli05@amgen.com/Documents/Phenix_old/HGSNAT_ActylCoA/cryosparc_P118_J100_008_volume_map_sharp.mrc

Opened cryosparc_P118_J100_008_volume_map_sharp.mrc as #3, grid size
440,440,440, pixel 0.813, shown at level 0.0461, step 2, values float32  

> volume #3 step 1

> volume #3 level 0.2823

> volume #3 color #b2b2ff80

> fitmap #3 inMap #1

Fit map cryosparc_P118_J100_008_volume_map_sharp.mrc in map
cryosparc_P130_J67_008_volume_map_sharp.mrc using 71667 points  
correlation = 0.3375, correlation about mean = 0.1019, overlap = 4820  
steps = 96, shift = 3.38, angle = 4.3 degrees  
  
Position of cryosparc_P118_J100_008_volume_map_sharp.mrc (#3) relative to
cryosparc_P130_J67_008_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99953376 -0.01675368 0.02552601 -0.02662221  
0.01846348 0.99749465 -0.06828996 7.66227057  
-0.02431795 0.06872942 0.99733891 -10.07004229  
Axis 0.91348327 0.33230057 0.23478638  
Axis point 0.00000000 151.15527842 105.88994094  
Rotation angle (degrees) 4.30112474  
Shift along axis 0.15754914  
  

> ui windowfill toggle

> select #3

2 models selected  

> view matrix models
> #3,0.99953,-0.016754,0.025526,-3.0245,0.018463,0.99749,-0.06829,5.3911,-0.024318,0.068729,0.99734,-10.717

> ui windowfill toggle

> fitmap #3 inMap #1

Fit map cryosparc_P118_J100_008_volume_map_sharp.mrc in map
cryosparc_P130_J67_008_volume_map_sharp.mrc using 71667 points  
correlation = 0.932, correlation about mean = 0.7273, overlap = 2.136e+04  
steps = 84, shift = 1.88, angle = 4.41 degrees  
  
Position of cryosparc_P118_J100_008_volume_map_sharp.mrc (#3) relative to
cryosparc_P130_J67_008_volume_map_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.99999302 -0.00320200 0.00192641 -2.96530932  
0.00319526 0.99998881 0.00348929 -4.30357589  
-0.00193757 -0.00348311 0.99999206 -2.29020858  
Axis -0.68216195 0.37804174 0.62589098  
Axis point 0.00000000 -473.63345400 1119.43716713  
Rotation angle (degrees) 0.29281260  
Shift along axis -1.03753101  
  

> select clear

> ui windowfill toggle

> hide #!2 models

> show #!2 models

> hide #!1 models

> show #!1 models

> hide #!3 models

> show #!3 models

> hide #!1 models

> volume #3 level 0.243

> volume #3 level 0.1965

> volume #3 level 0.3395

> volume #3 level 0.2644

> volume #3 level 0.3467

Unsupported scale factor (0.000000) detected on Display0  

QPainter::begin: Paint device returned engine == 0, type: 3  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/fli05@amgen.com/Downloads/cryosparc_P139_J104_class_00_00122_volume_sharp.mrc

Opened cryosparc_P139_J104_class_00_00122_volume_sharp.mrc as #1, grid size
128,128,128, pixel 2.03, shown at level 0.0436, step 1, values float32  

> volume #1 level 0.3403




OpenGL version: 4.1 INTEL-18.4.6
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics OpenGL Engine
OpenGL vendor: Intel Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro16,2
      Processor Name: Quad-Core Intel Core i7
      Processor Speed: 2.3 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 512 KB
      L3 Cache: 8 MB
      Hyper-Threading Technology: Enabled
      Memory: 16 GB
      System Firmware Version: 1715.81.2.0.0 (iBridge: 19.16.10744.0.0,0)
      OS Loader Version: 540.80.2~11

Software:

    System Software Overview:

      System Version: macOS 12.2.1 (21D62)
      Kernel Version: Darwin 21.3.0
      Time since boot: 3 days 14 minutes

Graphics/Displays:

    Intel Iris Plus Graphics:

      Chipset Model: Intel Iris Plus Graphics
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x8a53
      Revision ID: 0x0007
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        P27h-20:
          Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
          UI Looks like: 2560 x 1440 @ 59.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: V908KKL1    
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Automatically Adjust Brightness: Yes
          Connection Type: Thunderbolt/DisplayPort


Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.2.22
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0