Histogram widget: operands could not be broadcast together with shapes

[chimerax-bug-report@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.19045
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> C:\Users\Zuijderveltjl\Documents\LACDR\PhD\Experimental\Data\AlphaFold2\Sox10eGFP\SOX10_WT_eGFP_03\SOX10_WT_eGFP_3ca91\SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
> format pdb

Chain information for
SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb #1  
---  
Chain | Description  
A | No description available  
  

> color hot pink

> show target ab

> select clear

> select up

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

10 atoms, 10 bonds, 1 residue, 1 model selected  

> select up

1315 atoms, 1367 bonds, 184 residues, 1 model selected  

> select up

5481 atoms, 5635 bonds, 720 residues, 1 model selected  

> select down

1315 atoms, 1367 bonds, 184 residues, 1 model selected  

> select up

5481 atoms, 5635 bonds, 720 residues, 1 model selected  

> select up

5481 atoms, 5635 bonds, 720 residues, 1 model selected  

> select down

1315 atoms, 1367 bonds, 184 residues, 1 model selected  

> select down

10 atoms, 10 bonds, 1 residue, 1 model selected  

> select up

1315 atoms, 1367 bonds, 184 residues, 1 model selected  

> select up

5481 atoms, 5635 bonds, 720 residues, 1 model selected  

> select down

1315 atoms, 1367 bonds, 184 residues, 1 model selected  

> select down

10 atoms, 10 bonds, 1 residue, 1 model selected  

> select down

2 atoms, 1 bond, 1 residue, 1 model selected  

> select up

10 atoms, 10 bonds, 1 residue, 1 model selected  

> select up

1315 atoms, 1367 bonds, 184 residues, 1 model selected  

> select down

10 atoms, 10 bonds, 1 residue, 1 model selected  

> label sel text "{0.name} {0.number}{0.insertion_code}"

Fetching url http://www.colourlovers.com/api/palettes?keywords=blue-
white0red&format=json&numResults=100 failed:  
HTTP Error 500: Internal Server Error  

> color sequential #1/A palette blue-white-red

Fetching url http://www.colourlovers.com/api/palettes?keywords=blue-white-
green&format=json&numResults=100 failed:  
HTTP Error 500: Internal Server Error  

> color sequential #1/A palette blue-white-red

> color ?

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> hide sel target a

> select down

2 atoms, 1 bond, 1 residue, 1 model selected  

> select down

1 bond, 1 model selected  

> select down

1 bond, 1 model selected  

> select down

1 bond, 1 model selected  

> select down

1 bond, 1 model selected  

> select clear

> hide target a

> ~label #1 residues

> select ?

Expected an objects specifier or a keyword  

> select #1 62-102

Expected a keyword  

> show #1/a:62-102 target ab

> hide #1/a:62-102 cartoons

> select #1:62-102

315 atoms, 322 bonds, 41 residues, 1 model selected  

> alias define Dim sel

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute  
cmd.run(cmd_text)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\std_commands\alias.py", line 35, in alias  
cli.create_alias(name, text, user=True, logger=logger)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 3517, in create_alias  
register(name, alias.cmd_desc(synopsis='alias of "%s"' % text, url=url),  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2338, in register  
_parent_info.add_subcommand(words[-1], name, cmd_desc, logger=logger)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2252, in add_subcommand  
logger.info("FYI: alias is hiding existing command" %  
TypeError: not all arguments converted during string formatting  
  
TypeError: not all arguments converted during string formatting  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2252, in add_subcommand  
logger.info("FYI: alias is hiding existing command" %  
  
See log for complete Python traceback.  
  

> alias define Dim sel

> color sel yellow

> select #1:102-180

682 atoms, 701 bonds, 79 residues, 1 model selected  

> color sel yellow

> select #1:62-101

308 atoms, 314 bonds, 40 residues, 1 model selected  

> color sel orange

> color sel light sea green

> deselct

Unknown command: deselct  

> deselect

Unknown command: deselect  

> select clear

[Repeated 1 time(s)]

> shape tube /a@CA radius 0.9 bandLength 4

> shape tube /a@CA radius 0.9 bandLength 1

> shape tube /a@CA radius 0.9 bandLength 10

> shape tube /a@CA radius 0.9 bandLength 4

> shape tube /a@CA radius 0.9 bandLength 10

> shape tube /a@CA radius 0.9 bandLength 1

> shape tube /a@CA radius 0.9 bandLength 4

> lighting soft

> lighting shadows true intensity 0.5

> camera sbs

> rock

> log

> open https://www.rbvi.ucsf.edu/chimerax/tutorials.html

Opened https://www.rbvi.ucsf.edu/chimerax/tutorials.html  

> camera ?

Expected one of '360', '360sbs', '360tb', 'crosseye', 'dome', 'mono', 'ortho',
'sbs', 'stereo', 'tb', or 'walleye' or a keyword  

> camera orhto

Expected one of '360', '360sbs', '360tb', 'crosseye', 'dome', 'mono', 'ortho',
'sbs', 'stereo', 'tb', or 'walleye' or a keyword  

> camera ortho

> camera stereo

Could not switch graphics mode. Graphics driver did not create OpenGL context.  

> camera tb

> camera walleye

> camera dome

> camera mono

> color bfactor

5481 atoms, 720 residues, atom bfactor range 21.4 to 98.9  

> show atoms

> show cartoons

> show surfaces

[Repeated 1 time(s)]

> show cartoons

[Repeated 1 time(s)]

> show atoms

> hide cartoons

> hide surfaces

> hide atoms

> ?

Unknown command: shape ?  

> string

Unknown command: shape string  

> help shape

> shape ribbon

Missing or invalid "atoms" argument: empty atom specifier  

> hide #2 models

> hide #3 models

> hide #4 models

> hide #5 models

> hide #6 models

> hide #7 models

> hide #8 models

> hide #!1 models

> show #!1 models

> show #2

> delete #2

> delete #3

> delete #4

> delete #5

> list

Unknown command: list  

> hide #2 models

> show #2 models

> show #3 models

> hide #3 models

> show #3 models

> hide #2 models

> show #4 models

> hide #3 models

> hide #4 models

> show #5 models

> show #6 models

> hide #6 models

> show #6 models

> show #7 models

> show #8 models

> hide #8 models

> hide #1.1 models

> show #1.1 models

> hide #5 models

> hide #7 models

> hide #6 models

> hide #!1 models

> show #!1 models

> hide #1.1 models

> show #1.1 models

> delete #2

> delete tube

Missing or invalid "atoms" argument: invalid atoms specifier  

> delete name tube

Missing or invalid "atoms" argument: invalid atoms specifier  

> delete model #2

Missing or invalid "atoms" argument: invalid atoms specifier  

> show #2 models

> plain

Unknown command: shape plain  

> shape ribbon

Missing or invalid "atoms" argument: empty atom specifier  

> select add #1

5481 atoms, 5635 bonds, 720 residues, 1 model selected  

> select #1

5481 atoms, 5635 bonds, 720 residues, 1 model selected  

> select add #2

5481 atoms, 5635 bonds, 720 residues, 3 models selected  

> shape ribbon

Missing or invalid "atoms" argument: empty atom specifier  

> ribbon #1

> hide #1.1 models

> hide #2 models

> select subtract #2

5481 atoms, 5635 bonds, 720 residues, 2 models selected  

> select subtract #1.1

1 model selected  

> color bfactor

5481 atoms, 720 residues, 1 surfaces, atom bfactor range 21.4 to 98.9  

> color byattribute bfactor palette
> black:black:gray:gray:red:orange:yellow:white

5481 atoms, 720 residues, 1 surfaces, atom bfactor range 21.4 to 98.9  

> bg white

Unknown command: bg white  

> set bgColor white

> set bgColor blue

> set bgColor light grey

> cartoon hide

> show atoms

> delete #2

> delete #1.2

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> close session

> open
> C:\Users\Zuijderveltjl\Documents\LACDR\PhD\Experimental\Data\AlphaFold2\Sox10eGFP\SOX10_WT_eGFP_03\SOX10_WT_eGFP_3ca91\SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
> format pdb

Chain information for
SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb #1  
---  
Chain | Description  
A | No description available  
  

> hide cartoons

> show atoms

> color cyabn\

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color cyan

> coulombic range -10, 10

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for
SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb_A
SES surface #1.1: minimum, -22.32, mean -1.69, maximum 13.03  

> coulombic range -10, 10

Coulombic values for
SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb_A
SES surface #1.1: minimum, -22.32, mean -1.69, maximum 13.03  

> transparency 30

> set bgColor white

> lighting flat

> graphics silhouettes false

> lighting flat

> graphics silhouettes false

> lighting shadows true intensity 0.5

> lighting flat

> hide #* target a

> show target ab

> set bgColor gray

> color gray

> ribbon

> show atoms

> hide surfaces

> hide cartoons

[Repeated 1 time(s)]

> show cartoons

> set bgColor black

> lighting soft

> lighting shadows true intensity 0.5

> ui tool show H-Bonds

> hbonds sel color #0000ff radius 0.1 dashes 0 restrict both reveal true

Atom specifier selects no atoms  

> select #1

5481 atoms, 5635 bonds, 720 residues, 1 model selected  

> ui tool show H-Bonds

> hbonds sel color #0000ff radius 0.1 dashes 0 restrict both reveal true

324 hydrogen bonds found  

> select clear

> color sequenctial blue:cornflower:gray:white:gray:pink:red

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color sequential blue:cornflower:gray:white:gray:pink:red

Expected one of 'chains', 'polymers', 'residues', or 'structures' or a keyword  

> color #1 sequential blue:cornflower:gray:white:gray:pink:red

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> select #1

5481 atoms, 5635 bonds, 324 pseudobonds, 720 residues, 2 models selected  

> color sequential blue:cornflower:gray:white:gray:pink:red

Expected one of 'chains', 'polymers', 'residues', or 'structures' or a keyword  

> close session

> open
> C:\Users\Zuijderveltjl\Documents\LACDR\PhD\Experimental\Data\AlphaFold2\Sox10eGFP\SOX10_WT_eGFP_03\SOX10_WT_eGFP_3ca91\SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
> format pdb

Chain information for
SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb #1  
---  
Chain | Description  
A | No description available  
  

> color sequential blue:cornflower:gray:white:gray:pink:red

Expected one of 'chains', 'polymers', 'residues', or 'structures' or a keyword  

> color sequential /a palette blue:cornflower:gray:white:gray:pink:red

> ui tool show "Show Sequence Viewer"

> sequence chain /A

Alignment identifier is 1/A  

> select /A:70-71

13 atoms, 12 bonds, 2 residues, 1 model selected  

> select /A:70-80

83 atoms, 82 bonds, 11 residues, 1 model selected  

> select /A:83

12 atoms, 12 bonds, 1 residue, 1 model selected  

> select /A:83-86

41 atoms, 43 bonds, 4 residues, 1 model selected  

> select
> /A:70-80,110-125,131-144,147-167,273-275,278-280,283-287,294-300,485-490,539-553,558-563,565-568,715-719

960 atoms, 969 bonds, 116 residues, 1 model selected  

> select clear

> select /A:102

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:102-180

682 atoms, 701 bonds, 79 residues, 1 model selected  

> show sel atoms, bonds

> hide H

> color sel byelement

> graphics silhouettes true

> select clear

> preset apply pub 1

No preset name matches 'apply pub 1'  

> color hotpink pink,r helix; color dark magenta,r strand; color grey,r coil

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color hotpink pink,r :/isHelix

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color darkred magenta,r :/isStrand

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  

> color grey,r :/isCoil

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color grey,r :/select :/isHelix

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color hot pink

> deselect

Unknown command: deselect  

> select :/isStrand

Expected an objects specifier or a keyword  

> color dark magenta

> deselect

Unknown command: deselect  

> select :/isCoil

Expected an objects specifier or a keyword  

> color grey

> deselect

Unknown command: deselect  

> select clear

> select :/isHelix

Expected an objects specifier or a keyword  

> select helix

960 atoms, 969 bonds, 116 residues, 1 model selected  

> color sel hot pink

> select strand

930 atoms, 939 bonds, 115 residues, 1 model selected  

> color sel dark magenta

> select coil

3591 atoms, 3679 bonds, 489 residues, 1 model selected  

> color sel grey

> set bgColor white

> select clear

> show cartoons

> hide atoms

> ui tool show "Render By Attribute"

> color byattribute bfactor

5481 atoms, 720 residues, atom bfactor range 21.4 to 98.9  

> color bfactor

5481 atoms, 720 residues, atom bfactor range 21.4 to 98.9  

> color bfactor

5481 atoms, 720 residues, atom bfactor range 21.4 to 98.9  

> color bfactor

5481 atoms, 720 residues, atom bfactor range 21.4 to 98.9  

> color bfactor

5481 atoms, 720 residues, atom bfactor range 21.4 to 98.9  

> color bfactor

5481 atoms, 720 residues, atom bfactor range 21.4 to 98.9  

> ui tool show "Render By Attribute"

[Repeated 1 time(s)]

> worm

Unknown command: worm  

> wormhelp worm

Unknown command: wormhelp worm  

> help worm

No help found for 'worm'  

> tube : thicknessAttr bfactor

Unknown command: tube : thicknessAttr bfactor  

> shape tube : thicknessAttr bfactor

Expected a keyword  

> select /A:467

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select /A:467-481

66 atoms, 65 bonds, 15 residues, 1 model selected  

> color sel red

> color sel magenta

> select /A:482

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:482-720

1898 atoms, 1941 bonds, 239 residues, 1 model selected  

> color sel lime

> select /A:481

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /A:92-481

2928 atoms, 3024 bonds, 390 residues, 1 model selected  

> select
> /A:493-504,507-518,523-530,574-582,587-597,600-610,630-637,642-652,658-669,681-690,699-709

930 atoms, 939 bonds, 115 residues, 1 model selected  

> select /A:466

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:1-466

3517 atoms, 3627 bonds, 466 residues, 1 model selected  

> color sel sequential /a palette cornflower:white:teal

Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero',
'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms',
'fromcartoons', 'fromribbons', or 'random' or a keyword  

> color sequential sel /a palette cornflower:white:teal

Expected one of 'chains', 'polymers', 'residues', or 'structures' or a keyword  

> color sequential #1:1-466 /a palette cornflower:white:teal

> select clear

> set bgColor gray

> select /A:1-466

3517 atoms, 3627 bonds, 466 residues, 1 model selected  

> select
> /A:493-504,507-518,523-530,574-582,587-597,600-610,630-637,642-652,658-669,681-690,699-709

930 atoms, 939 bonds, 115 residues, 1 model selected  

> color sequential #1:1-466 /a palette cornflower:white:teal:green

> select clear

> select /A:1-466

3517 atoms, 3627 bonds, 466 residues, 1 model selected  

> color sequential sel /a palette cornflower:white:teal:green

Expected one of 'chains', 'polymers', 'residues', or 'structures' or a keyword  

> color sequential sel palette cornflower:white:teal:green

> color sequential sel palette cornflower:white:teal

> select /A:467-468

8 atoms, 7 bonds, 2 residues, 1 model selected  

> select /A:467-481

66 atoms, 65 bonds, 15 residues, 1 model selected  

> color sel orange

> select /A:482-483

15 atoms, 14 bonds, 2 residues, 1 model selected  

> select
> /A:70-80,110-125,131-144,147-167,273-275,278-280,283-287,294-300,485-490,539-553,558-563,565-568,715-719

960 atoms, 969 bonds, 116 residues, 1 model selected  

> select /A:482

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /A:482-720

1898 atoms, 1941 bonds, 239 residues, 1 model selected  

> color sel forest green

> color sel lime

> select clear

> lighting soft

> lighting shadows true intensity 0.5

> rock

> set bgColor black

> help mean

No help found for 'mean'  

> help average

No help found for 'average'  

> help allign

No help found for 'allign'  

> help allignment

No help found for 'allignment'  

> open
> C:/Users/Zuijderveltjl/Documents/LACDR/PhD/Experimental/Data/AlphaFold2/Sox10eGFP/SOX10_WT_eGFP_02/SOX10_WT_eGFP_3ca91/SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb

Chain information for
SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb #2  
---  
Chain | Description  
A | No description available  
  

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> hide #2 models

> show #2 models

> delete #2

> open
> C:/Users/Zuijderveltjl/Documents/LACDR/PhD/Experimental/Data/AlphaFold2/Sox10eGFP/SOX10_WT_eGFP_01/SOX10_WT_eGFP_3ca91/SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb

Chain information for
SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb #2  
---  
Chain | Description  
A | No description available  
  

> allign #2 to #1

Unknown command: allign #2 to #1  

> matchmaker #2 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb,
chain A (#1) with
SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb,
chain A (#2), sequence alignment score = 3720  
RMSD between 642 pruned atom pairs is 0.833 angstroms; (across all 720 pairs:
1.235)  
  

> ui tool show "Render By Attribute"

> matchmaker #2 to #1 showAlignment true

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb,
chain A (#1) with
SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb,
chain A (#2), sequence alignment score = 3720  
Alignment identifier is 1  
Showing conservation header ("seq_conservation" residue attribute) for
alignment 1  
Hiding conservation header for alignment 1  
Chains used in RMSD evaluation for alignment 1:
SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
#1/A,
SOX10_WT_eGFP_3ca91_unrelaxed_rank_001_alphafold2_ptm_model_3_seed_000.pdb
#2/A  
Showing rmsd header ("seq_rmsd" residue attribute) for alignment 1  
RMSD between 642 pruned atom pairs is 0.833 angstroms; (across all 720 pairs:
1.235)  
  

> matchmaker ?

Missing or invalid "matchAtoms" argument: invalid atoms specifier  

> help matchmaker

> ui tool show "Render By Attribute"

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 759, in _set_value_cb  
self._redraw_cb()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 646, in _redraw_cb  
self._bins = left + filled_bins + right  
ValueError: operands could not be broadcast together with shapes (0,) (285,)  
  
ValueError: operands could not be broadcast together with shapes (0,) (285,)  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 646, in _redraw_cb  
self._bins = left + filled_bins + right  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 179, in <lambda>  
if event.modifiers() & mod_key_info("shift")[0] else
self._select_marker_cb(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 714, in _select_marker_cb  
self._set_sel_marker(marker, drag_start=event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 743, in _set_sel_marker  
self._last_mouse_xy = self._abs_xy((drag_start.scenePos().x(),
drag_start.scenePos().y()))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 179, in <lambda>  
if event.modifiers() & mod_key_info("shift")[0] else
self._select_marker_cb(event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 714, in _select_marker_cb  
self._set_sel_marker(marker, drag_start=event)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 743, in _set_sel_marker  
self._last_mouse_xy = self._abs_xy((drag_start.scenePos().x(),
drag_start.scenePos().y()))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 180, in <lambda>  
self._hist_scene.mouseMoveEvent = lambda event: self._move_marker_cb(event) \  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 576, in _move_marker_cb  
mouse_xy = self._abs_xy((event.scenePos().x(), event.scenePos().y()))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
TypeError: object of type 'function' has no len()  
  
TypeError: object of type 'function' has no len()  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\ui\widgets\histogram.py", line 441, in _abs_xy  
num_bins = len(self._bins)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 - Build 31.0.101.4091
OpenGL renderer: Intel(R) UHD Graphics
OpenGL vendor: Intel

Python: 3.9.11
Locale: nl_NL.cp1252
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: windows

Manufacturer: HP
Model: HP EliteBook 630 13 inch G9 Notebook PC
OS: Microsoft Windows 10 Enterprise (Build 19045)
Memory: 16,794,439,680
MaxProcessMemory: 137,438,953,344
CPU: 12 12th Gen Intel(R) Core(TM) i5-1235U
OSLanguage: en-GB

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2023.5.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.9.1
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.43.10
    ChimeraX-AtomicLibrary: 10.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.8
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.6.1
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.1
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.0.12
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.1
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10.3
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Topography: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    comtypes: 1.1.14
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.3
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 23.1
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.0
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pywin32: 305
    pyzmq: 25.0.2
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.28.2
    scipy: 1.9.3
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.1
    traitlets: 5.9.0
    typing-extensions: 4.5.0
    tzdata: 2023.3
    urllib3: 1.26.15
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    WMI: 1.5.1
    zipp: 3.15.0

[Eric Pettersen]

Duplicate of #9328