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Opened 2 years ago
Closed 2 years ago
#9773 closed defect (nonchimerax)
No space left on device saving movie
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | UI | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Linux-5.10.181-gentoo-x86_64-Intel-R-_Xeon-R-_Silver_4110_CPU_@_2.10GHz-with-glibc2.37
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /home/pauline/Desktop/phenix/auto_sharpen/sharpened_map.ccp4 format
> ccp4
Opened sharpened_map.ccp4 as #1, grid size 900,900,900, pixel 0.485, shown at
step 1, values float32
> volume #1 region 0,0,0,899,899,899 step 4
[Repeated 1 time(s)]
> ui tool show "Segment Map"
Segmenting sharpened_map.ccp4, density threshold 3.959554
Only showing 60 of 426 regions.
Showing 60 of 426 region surfaces
21313 watershed regions, grouped to 426 regions
Showing sharpened_map.seg - 426 regions, 60 surfaces
Segmenting sharpened_map.ccp4, density threshold 3.959554
Only showing 60 of 8787 regions.
Showing 60 of 8787 region surfaces
21313 watershed regions, grouped to 8787 regions
Showing sharpened_map.seg - 8787 regions, 60 surfaces
Segmenting sharpened_map.ccp4, density threshold 3.959554
Only showing 100 of 8787 regions.
Showing 100 of 8787 region surfaces
21313 watershed regions, grouped to 8787 regions
Showing sharpened_map.seg - 8787 regions, 100 surfaces
> surface dust #1 size 4.85
> ui mousemode right select
> select #2.1
1 model selected
Ungrouped to 2 regions
> select #2.4
1 model selected
Ungrouped to 2 regions, but did not show all surfaces, see Options
> select #2.3
1 model selected
Ungrouped to 2 regions, but did not show all surfaces, see Options
> select #1
3 models selected
> select #1
3 models selected
> select clear
> select #2.18
1 model selected
Ungrouped to 2 regions, but did not show all surfaces, see Options
> lighting soft
> select #2.24
1 model selected
Ungrouped to 2 regions, but did not show all surfaces, see Options
> select #1
3 models selected
> select clear
[Repeated 1 time(s)]
> select #2.99
1 model selected
> select #2.12
1 model selected
Grouped 1 regions
> select add #2.99
2 models selected
> select subtract #2.99
1 model selected
Grouped 1 regions
[Repeated 1 time(s)]
> select #2.99
1 model selected
> select add #2.12
2 models selected
> select subtract #2.99
1 model selected
> select add #2.99
2 models selected
> select #2.99
1 model selected
> select add #2.12
2 models selected
Grouped 2 regions
> select #2.13
1 model selected
Ungrouped to 2 regions
> select #2.24
1 model selected
Ungrouped to 2 regions, but did not show all surfaces, see Options
> select #1
3 models selected
> select clear
> select #2.19
1 model selected
> select #1
3 models selected
> select #2.4
1 model selected
> select #2.19
1 model selected
> select #1
3 models selected
> select #1
3 models selected
> select #2.47
1 model selected
> select add #2.7
2 models selected
Grouped 2 regions
> select #1
3 models selected
> select #2.12
1 model selected
> select clear
Segmenting sharpened_map.ccp4, density threshold 3.959554
Only showing 100 of 8787 regions.
Showing 100 of 8787 region surfaces
21313 watershed regions, grouped to 8787 regions
Showing sharpened_map.seg - 8787 regions, 100 surfaces
> select #2.4
1 model selected
Ungrouped to 2 regions
> select #2.1
1 model selected
Grouped 1 regions
Ungrouped to 1 regions
Ungrouped to 2 regions, but did not show all surfaces, see Options
[Repeated 2 time(s)]
> select add #2.7
2 models selected
> select #2.1
1 model selected
> select add #2.102
2 models selected
Grouped 2 regions
> select add #2.77
2 models selected
> select #2.77
1 model selected
> select add #2.1
2 models selected
Grouped 2 regions
> select add #2.70
2 models selected
Grouped 2 regions
> select clear
> select #2.100
1 model selected
> select #2.69
1 model selected
> select add #2.26
2 models selected
Grouped 2 regions
> select #2.51
1 model selected
> select #2.18
1 model selected
Ungrouped to 2 regions
> select #2.25
1 model selected
Ungrouped to 2 regions
> select #2.18
1 model selected
Ungrouped to 2 regions
Ungrouped to 4 regions
> select #2.18
1 model selected
> select add #2.33
2 models selected
Grouped 2 regions
> select #1
3 models selected
> select #2.18
1 model selected
> select #2.4
1 model selected
> select #2.102
1 model selected
> select add #2.70
2 models selected
Grouped 2 regions
> select #2.60
1 model selected
> select add #2.25
2 models selected
Grouped 2 regions
> select #1
3 models selected
> select clear
> surface dust #1 size 4.85
> select #2.99
1 model selected
> select add #2.12
2 models selected
Grouped 2 regions
> select #2.87
1 model selected
> select add #2.9
2 models selected
Grouped 2 regions
> select #2.92
1 model selected
> select add #2.6
2 models selected
Grouped 2 regions
> select #2.55
1 model selected
> select add #2.13
2 models selected
Grouped 2 regions
Ungrouped to 2 regions
> select #2.55
1 model selected
Ungrouped to 2 regions
> select #2.13
1 model selected
Ungrouped to 2 regions
> select #2.23
1 model selected
> select #2.70
1 model selected
> select #2.60
1 model selected
> select add #2.70
2 models selected
Grouped 2 regions
> select add #2.33
2 models selected
Grouped 2 regions
> select add #2.95
2 models selected
Grouped 2 regions
> select #2.3
1 model selected
Ungrouped to 2 regions
> select #2.60
1 model selected
Ungrouped to 2 regions
> select #2.3
1 model selected
Ungrouped to 2 regions
> select #2.77
1 model selected
> select add #2.70
2 models selected
Grouped 2 regions
> select add #2.38
2 models selected
Grouped 2 regions
> select #2.73
1 model selected
> select add #2.20
2 models selected
Grouped 2 regions
> select #2.17
1 model selected
> select add #2.96
2 models selected
Grouped 2 regions
> select #2.5
1 model selected
Ungrouped to 2 regions
> select clear
> select #2.83
1 model selected
> select add #2.38
2 models selected
Grouped 2 regions
> select #2.39
1 model selected
Ungrouped to 2 regions
> select #2.73
1 model selected
> select #2.15
1 model selected
Ungrouped to 2 regions
> select #2.39
1 model selected
Ungrouped to 2 regions
Ungrouped to 4 regions
> select #2.77
1 model selected
Ungrouped to 2 regions
[Repeated 1 time(s)]
> select #2.35
1 model selected
> select add #2.96
2 models selected
Grouped 2 regions
> select #2.77
1 model selected
Ungrouped to 2 regions
Grouped 2 regions
> select add #2.87
2 models selected
Grouped 2 regions
> select add #2.2
2 models selected
> select #2.2
1 model selected
Ungrouped to 2 regions
> select #2.77
1 model selected
Ungrouped to 2 regions
> select #2.96
1 model selected
Ungrouped to 2 regions, but did not show all surfaces, see Options
> select add #2.76
2 models selected
Grouped 2 regions
> select add #2.2
2 models selected
Grouped 2 regions
> select add #2.35
2 models selected
Grouped 2 regions
> select #2.67
1 model selected
> select add #2.94
2 models selected
Grouped 2 regions
> select add #2.16
2 models selected
Grouped 2 regions
> select #2.42
1 model selected
> select add #2.7
2 models selected
Grouped 2 regions
> select #2.80
1 model selected
> select add #2.49
2 models selected
> select add #2.43
3 models selected
> select #2.51
1 model selected
> select #2.4
1 model selected
> select #2.51
1 model selected
> select add #2.43
2 models selected
Grouped 2 regions
> select add #2.49
2 models selected
Grouped 2 regions
> select add #2.80
2 models selected
Grouped 2 regions
> select #2.24
1 model selected
Ungrouped to 2 regions
> select #2.43
1 model selected
Ungrouped to 2 regions
Ungrouped to 4 regions
> select #2.66
1 model selected
Ungrouped to 2 regions
> select #2.51
1 model selected
Ungrouped to 2 regions
> select #2.66
1 model selected
Ungrouped to 2 regions
> select #2.77
1 model selected
> select add #2.80
2 models selected
Grouped 2 regions
> select add #2.26
2 models selected
Ungrouped to 4 regions
> select #2.43
1 model selected
Ungrouped to 2 regions
> select #2.66
1 model selected
> select add #2.80
2 models selected
Grouped 2 regions
> select #2.24
1 model selected
> select add #2.49
2 models selected
> select add #2.51
3 models selected
Grouped 3 regions
> select add #2.26
2 models selected
Grouped 2 regions
> select add #2.42
2 models selected
Grouped 2 regions
> select #2.94
1 model selected
> select add #2.43
2 models selected
Grouped 2 regions
> select add #2.96
2 models selected
Grouped 2 regions
> select #2.82
1 model selected
> select add #2.37
2 models selected
Grouped 2 regions
> select #2.58
1 model selected
> select add #2.37
2 models selected
Grouped 2 regions
> select #2.10
1 model selected
Ungrouped to 2 regions
> select #2.42
1 model selected
> select add #2.54
2 models selected
Grouped 2 regions
> select #2.56
1 model selected
> select add #2.43
2 models selected
> select add #2.57
3 models selected
Grouped 3 regions
> select #2.68
1 model selected
> select add #2.52
2 models selected
Grouped 2 regions
> select #2.38
1 model selected
> select add #2.55
2 models selected
> select add #2.41
3 models selected
Grouped 3 regions
> select #2.84
1 model selected
> select add #2.15
2 models selected
Grouped 2 regions
> select #2.62
1 model selected
> select add #2.19
2 models selected
Grouped 2 regions
> select #1
3 models selected
> select clear
> select #2.97
1 model selected
> select add #2.29
2 models selected
Grouped 2 regions
> select #2.47
1 model selected
> select add #2.7
2 models selected
Grouped 2 regions
> select #1
3 models selected
> select #1
3 models selected
> select clear
> select #1
3 models selected
> select #2.91
1 model selected
> select #1
3 models selected
Ungrouped to 2806 regions, but did not show all surfaces, see Options
> select #1
3 models selected
> undo
[Repeated 1 time(s)]
> select #1
3 models selected
Ungrouped to 1966 regions, but did not show all surfaces, see Options
> ui mousemode right "translate selected models"
> view matrix models #1,1,0,0,103.91,0,1,0,-7.5875,0,0,1,90.189
> view matrix models #1,1,0,0,269.61,0,1,0,3.4339,0,0,1,125.73
> view matrix models #1,1,0,0,300.88,0,1,0,3.2914,0,0,1,142.85
> undo
[Repeated 3 time(s)]
> hide #!1 models
> select add #2
167 models selected
> close session
> open /home/pauline/Desktop/phenix/auto_sharpen/sharpened_map.ccp4 format
> ccp4
Opened sharpened_map.ccp4 as #1, grid size 900,900,900, pixel 0.485, shown at
step 1, values float32
> volume #1 region 0,0,0,899,899,899 step 4
[Repeated 1 time(s)]
> surface dust #1 size 4.85
> volume #1 step 1
> ui tool show "Segment Map"
Segmenting sharpened_map.ccp4, density threshold 3.959554
Only showing 120 of 8872 regions.
Showing 120 of 8872 region surfaces
21313 watershed regions, grouped to 8872 regions
Showing sharpened_map.seg - 8872 regions, 120 surfaces
> hide #!1 models
> select clear
> ui mousemode right select
[Repeated 1 time(s)]
> select #2.17
1 model selected
Ungrouped to 2 regions
> select #2.122
1 model selected
Ungrouped to 2 regions, but did not show all surfaces, see Options
> undo
[Repeated 1 time(s)]Only showing 120 of 8874 regions.
Showing 120 of 8874 region surfaces
> select #2.122
1 model selected
Ungrouped to 2 regions
> select #2.119
1 model selected
Ungrouped to 2 regions, but did not show all surfaces, see Options
Only showing 120 of 8876 regions.
Showing 120 of 8876 region surfaces
Only showing 120 of 8876 regions.
Showing 120 of 8876 region surfaces
> select #2.7
1 model selected
Ungrouped to 2 regions
> select #2.120
1 model selected
Ungrouped to 2 regions, but did not show all surfaces, see Options
Only showing 120 of 8878 regions.
Showing 120 of 8878 region surfaces
> select #2.7
1 model selected
> select add #2.24
2 models selected
Grouped 2 regions
> select add #2.113
2 models selected
Grouped 2 regions
> select #2.31
1 model selected
> select add #2.53
2 models selected
Grouped 2 regions
> select add #2.93
2 models selected
Grouped 2 regions
> select #2.49
1 model selected
> select #2.36
1 model selected
Ungrouped to 2 regions
> select #2.53
1 model selected
> select #2.53
1 model selected
Ungrouped to 2 regions
> select #2.36
1 model selected
> select add #2.23
2 models selected
Grouped 2 regions
> select #2.93
1 model selected
> select add #2.49
2 models selected
Grouped 2 regions
> save /home/pauline/Desktop/Chimera_segment_map/segment1.cxs
> select #2.24
1 model selected
> select #2.71
1 model selected
> select add #2.8
2 models selected
Grouped 2 regions
> select #2.95
1 model selected
> select add #2.15
2 models selected
Grouped 2 regions
> select #2.34
1 model selected
> select add #2.50
2 models selected
Grouped 2 regions
> select #2.64
1 model selected
Ungrouped to 2 regions
> select #2.49
1 model selected
> select #2.49
1 model selected
> select #2.34
1 model selected
> select #2.49
1 model selected
Ungrouped to 2 regions
> select #2.53
1 model selected
> select #2.34
1 model selected
> select #2.53
1 model selected
> select add #2.1
2 models selected
> select #2.1
1 model selected
Ungrouped to 2 regions
> select add #2.53
3 models selected
> select #2.71
1 model selected
> select add #2.53
2 models selected
Grouped 2 regions
> select add #2.90
2 models selected
Grouped 2 regions
> select #2.76
1 model selected
> select #2.2
1 model selected
Ungrouped to 2 regions
> select #2.76
1 model selected
> select add #2.53
2 models selected
Grouped 2 regions
> select add #2.56
2 models selected
Grouped 2 regions
> select #2.108
1 model selected
> select add #2.28
2 models selected
Grouped 2 regions
> select add #2.59
2 models selected
> select #2.59
1 model selected
> select #2.26
1 model selected
Ungrouped to 2 regions
> select #2.53
1 model selected
Ungrouped to 2 regions
> select #2.59
1 model selected
Ungrouped to 2 regions
[Repeated 1 time(s)]
> select #2.93
1 model selected
> select #2.59
1 model selected
> select #2.59
1 model selected
> select #2.76
1 model selected
> select #2.24
1 model selected
> select #2.6
1 model selected
> select add #2.89
2 models selected
Grouped 2 regions
> ui tool show "Color Actions"
> color sel dark magenta
> select #2.97
1 model selected
> select add #2.68
2 models selected
> select add #2.43
3 models selected
Grouped 3 regions
> select #2.20
1 model selected
Ungrouped to 2 regions
> select #2.53
1 model selected
Ungrouped to 2 regions
> select #2.20
1 model selected
> select add #2.68
2 models selected
Grouped 2 regions
> select #2.42
1 model selected
Grouped 1 regions
[Repeated 1 time(s)]
> select add #2.20
2 models selected
Grouped 2 regions
> ui tool show "Color Actions"
> color sel dark orange
> select #2.109
1 model selected
> select add #2.52
2 models selected
Grouped 2 regions
Ungrouped to 2 regions
> select #2.52
1 model selected
> select #2.5
1 model selected
Ungrouped to 2 regions
> select #2.42
1 model selected
> select #2.42
1 model selected
Ungrouped to 2 regions
> select #2.5
1 model selected
Ungrouped to 2 regions
> select #2.95
1 model selected
> select add #2.68
2 models selected
Grouped 2 regions
> select #2.97
1 model selected
> select add #2.42
2 models selected
Grouped 2 regions
> select add #2.21
2 models selected
Grouped 2 regions
> select #2.91
1 model selected
> select add #2.39
2 models selected
Grouped 2 regions
> select add #2.61
2 models selected
Grouped 2 regions
> select #2.82
1 model selected
> select add #2.57
2 models selected
Grouped 2 regions
> select #2.47
1 model selected
Ungrouped to 2 regions
> select #2.57
1 model selected
Ungrouped to 2 regions
> select #2.68
1 model selected
> select add #2.42
2 models selected
Grouped 2 regions
> select #2.47
1 model selected
> select add #2.22
2 models selected
Grouped 2 regions
> select #2.39
1 model selected
Ungrouped to 2 regions
> select #2.57
1 model selected
Ungrouped to 2 regions
> select #2.39
1 model selected
Ungrouped to 2 regions
> select #2.57
1 model selected
Ungrouped to 2 regions
> select #2.39
1 model selected
Ungrouped to 2 regions
> select #2.68
1 model selected
> select add #2.57
2 models selected
Grouped 2 regions
> select add #2.47
2 models selected
Grouped 2 regions
> select #2.95
1 model selected
> select add #2.91
2 models selected
> select add #2.33
3 models selected
Grouped 3 regions
> select #2.84
1 model selected
> select add #2.40
2 models selected
Grouped 2 regions
> select #2.86
1 model selected
> select add #2.44
2 models selected
> select add #2.79
3 models selected
> select #2.79
1 model selected
Ungrouped to 2 regions
> select #2.47
1 model selected
> select add #2.44
2 models selected
> select add #2.86
3 models selected
Grouped 3 regions
> select #2.103
1 model selected
> select #2.82
1 model selected
> select add #2.33
2 models selected
Grouped 2 regions
> select #2.52
1 model selected
> select add #2.5
2 models selected
Grouped 2 regions
> select #2.53
1 model selected
> select add #2.27
2 models selected
Grouped 2 regions
> select #2.111
1 model selected
> select add #2.66
2 models selected
Grouped 2 regions
> select add #2.48
2 models selected
Grouped 2 regions
> select add #2.67
2 models selected
Grouped 2 regions
> select #2.62
1 model selected
> select add #2.36
2 models selected
Grouped 2 regions
> select #2.102
1 model selected
> select add #2.99
2 models selected
Grouped 2 regions
> select add #2.21
2 models selected
Grouped 2 regions
> ui tool show "Color Actions"
> color sel sienna
> select #2.55
1 model selected
> select add #2.60
2 models selected
Grouped 2 regions
> select #2.78
1 model selected
> select #2.78
1 model selected
> select #2.78
1 model selected
> select #2.48
1 model selected
> select #2.23
1 model selected
> select #2.78
1 model selected
Ungrouped to 2 regions
> select #2.52
1 model selected
> select add #2.48
2 models selected
Grouped 2 regions
> select #2.53
1 model selected
> select add #2.11
2 models selected
Grouped 2 regions
> select #2.93
1 model selected
> select #2.59
1 model selected
> select add #2.76
2 models selected
Grouped 2 regions
> select #2.93
1 model selected
> select add #2.16
2 models selected
> select #2.28
1 model selected
> select add #2.93
2 models selected
Grouped 2 regions
> ui tool show "Color Actions"
> color sel sandy brown
> color sel goldenrod
> color sel gold
> color sel orange
> color sel green yellow
> color sel chartreuse
> color sel spring green
> color sel cyan
> color sel deep sky blue
> select #2.110
1 model selected
> select add #2.25
2 models selected
Grouped 2 regions
> select #2.100
1 model selected
> select add #2.72
2 models selected
Grouped 2 regions
> select add #2.16
2 models selected
Grouped 2 regions
> select #2.26
1 model selected
> select #2.26
1 model selected
> select #2.1
1 model selected
> select #2.107
1 model selected
> select #2.107
1 model selected
> select add #2.12
2 models selected
Grouped 2 regions
> select #2.73
1 model selected
> select add #2.15
2 models selected
Grouped 2 regions
> select #2.119
1 model selected
> select add #2.12
2 models selected
Grouped 2 regions
Only showing 120 of 8848 regions.
Showing 120 of 8848 region surfaces
> select #2.82
1 model selected
> select add #2.12
2 models selected
Grouped 2 regions
> select #2.59
1 model selected
> select add #2.12
2 models selected
Grouped 2 regions
> select #2.97
1 model selected
> select add #2.81
2 models selected
Grouped 2 regions
> select add #2.64
2 models selected
Grouped 2 regions
> select add #2.71
2 models selected
Grouped 2 regions
> select #2.73
1 model selected
> select add #2.34
2 models selected
> select add #2.53
3 models selected
Grouped 3 regions
Ungrouped to 3 regions
> select #2.53
1 model selected
> select #2.57
1 model selected
> select add #2.18
2 models selected
Grouped 2 regions
> select #2.53
1 model selected
> select add #2.56
2 models selected
Grouped 2 regions
> select #2.79
1 model selected
> select add #2.36
2 models selected
Only showing 120 of 8841 regions.
Showing 120 of 8841 region surfaces
> select #2.79
1 model selected
> select add #2.36
2 models selected
Grouped 2 regions
> select #2.56
1 model selected
> select add #2.9
2 models selected
> select #2.78
1 model selected
> select add #2.56
2 models selected
Grouped 2 regions
Only showing 120 of 8839 regions.
Showing 120 of 8839 region surfaces
> select add #2.9
2 models selected
Grouped 2 regions
Only showing 120 of 8838 regions.
Showing 120 of 8838 region surfaces
> save /home/pauline/Desktop/Chimera_segment_map/segment1.cxs
> lighting soft
> select #2.47
1 model selected
> select #2.20
1 model selected
> select #2.64
1 model selected
> select add #2.20
2 models selected
Grouped 2 regions
> select #2.72
1 model selected
> select add #2.24
2 models selected
Grouped 2 regions
> select #2.125
1 model selected
> select add #2.8
2 models selected
Grouped 2 regions
> select #2.71
1 model selected
> select add #2.8
2 models selected
Grouped 2 regions
> select #2.117
1 model selected
> select add #2.35
2 models selected
Grouped 2 regions
> select add #2.122
2 models selected
Grouped 2 regions
> select add #2.120
2 models selected
Grouped 2 regions
> select #2.94
1 model selected
> select add #2.84
2 models selected
> select add #2.4
3 models selected
Grouped 3 regions
> select #2.89
1 model selected
> select add #2.43
2 models selected
Grouped 2 regions
> select #2.59
1 model selected
> select add #2.5
2 models selected
Grouped 2 regions
> select #2.118
1 model selected
> select add #2.27
2 models selected
Grouped 2 regions
Only showing 120 of 8826 regions.
Showing 120 of 8826 region surfaces
> select #2.79
1 model selected
> select #2.78
1 model selected
> select #2.68
1 model selected
> select add #2.23
2 models selected
Grouped 2 regions
> select #2.89
1 model selected
> select add #2.115
2 models selected
Grouped 2 regions
> select add #2.38
2 models selected
Grouped 2 regions
> select add #2.37
2 models selected
Grouped 2 regions
> ui tool show "Color Actions"
> color sel lime green
> color sel medium sea green
> color sel olive drab
> color sel medium spring green
> select #2.86
1 model selected
> select add #2.107
2 models selected
Grouped 2 regions
> select add #2.82
2 models selected
Grouped 2 regions
> select add #2.48
2 models selected
Grouped 2 regions
> select #2.11
1 model selected
> select add #2.93
2 models selected
> select add #2.114
3 models selected
Grouped 3 regions
> ui tool show "Color Actions"
> color sel medium purple
> select #2.116
1 model selected
> select add #2.38
2 models selected
> select #2.116
1 model selected
> select add #2.66
2 models selected
Grouped 2 regions
> select add #2.3
2 models selected
Grouped 2 regions
> select #2.84
1 model selected
> select add #2.28
2 models selected
Grouped 2 regions
> select #2.62
1 model selected
> select add #2.2
2 models selected
Grouped 2 regions
> select #2.83
1 model selected
> select add #2.45
2 models selected
Grouped 2 regions
> select #2.49
1 model selected
Only showing 120 of 8812 regions.
Showing 120 of 8812 region surfaces
> select #2.90
1 model selected
Only showing 120 of 8812 regions.
Showing 120 of 8812 region surfaces
> select #2.64
1 model selected
Only showing 120 of 8812 regions.
Showing 120 of 8812 region surfaces
Drag select of 33662, 2079 of 77404 triangles, 33640, 2304 of 72248 triangles,
33677, 456 of 61816 triangles, 33649, 1474 of 51080 triangles, 33679, 848 of
49988 triangles, 33465, 4754 of 56176 triangles, 33765, 262 of 82752
triangles, 33794, 3724 of 115076 triangles, 33807, 1369 of 113268 triangles,
33410, 490 of 8660 triangles, 32834, 2290 of 7532 triangles, 33810, 1568 of
119872 triangles, 33816, 1829 of 107052 triangles, 33817, 2642 of 110000
triangles, 33823, 7374 of 115276 triangles, 33842, 18 of 102900 triangles
> select clear
> select #2.71
1 model selected
Only showing 120 of 8812 regions.
Showing 120 of 8812 region surfaces
> select add #2.35
2 models selected
Grouped 2 regions
> select #2.68
1 model selected
Only showing 120 of 8811 regions.
Showing 120 of 8811 region surfaces
> select add #2.38
2 models selected
Grouped 2 regions
> select #2.115
1 model selected
> select add #2.100
2 models selected
Grouped 2 regions
> select add #2.6
2 models selected
Grouped 2 regions
> select #2.79
1 model selected
> select add #2.77
2 models selected
Grouped 2 regions
Only showing 120 of 8807 regions.
Showing 120 of 8807 region surfaces
> select add #2.41
2 models selected
Grouped 2 regions
> select #2.105
1 model selected
> select add #2.49
2 models selected
Grouped 2 regions
> select #2.78
1 model selected
> select add #2.110
2 models selected
> select add #2.1
3 models selected
Grouped 3 regions
> select #2.100
1 model selected
> select add #2.15
2 models selected
Grouped 2 regions
Only showing 120 of 8802 regions.
Showing 120 of 8802 region surfaces
> select #2.81
1 model selected
Only showing 120 of 8802 regions.
Showing 120 of 8802 region surfaces
> select add #2.17
2 models selected
Grouped 2 regions
Only showing 120 of 8801 regions.
Showing 120 of 8801 region surfaces
> select add #2.101
2 models selected
Grouped 2 regions
Only showing 120 of 8800 regions.
Showing 120 of 8800 region surfaces
> select add #2.121
2 models selected
Grouped 2 regions
> select #2.52
1 model selected
> select add #2.17
2 models selected
Grouped 2 regions
> select #2.42
1 model selected
> select #2.115
1 model selected
> select add #2.42
2 models selected
Grouped 2 regions
> select #2.97
1 model selected
> select add #2.9
2 models selected
Grouped 2 regions
> select #2.81
1 model selected
> select add #2.43
2 models selected
Grouped 2 regions
> select #2.78
1 model selected
> select add #2.11
2 models selected
Grouped 2 regions
> ui tool show "Color Actions"
> color sel orchid
> select #2.82
1 model selected
> select add #2.12
2 models selected
Grouped 2 regions
> select #2.66
1 model selected
> select add #2.56
2 models selected
Grouped 2 regions
> select #2.100
1 model selected
> select add #2.83
2 models selected
> select add #2.74
3 models selected
Grouped 3 regions
> select add #2.30
2 models selected
Grouped 2 regions
> select add #2.34
2 models selected
> select #2.90
1 model selected
> select add #2.64
2 models selected
Grouped 2 regions
Only showing 120 of 8788 regions.
Showing 120 of 8788 region surfaces
Ungrouped to 2 regions
> select #2.118
1 model selected
Only showing 120 of 8789 regions.
Showing 120 of 8789 region surfaces
> select #2.96
1 model selected
> select add #2.58
2 models selected
Grouped 2 regions
> select #2.57
1 model selected
> select add #2.25
2 models selected
Grouped 2 regions
> select #2.26
1 model selected
> save /home/pauline/Desktop/Chimera_segment_map/segment1.cxs
> select #2.82
1 model selected
> select add #2.16
2 models selected
Grouped 2 regions
> select #2.66
1 model selected
> select add #2.25
2 models selected
Grouped 2 regions
Drag select of 33208, 776 of 25956 triangles, 33852, 5142 of 119684 triangles,
33856, 3712 of 117036 triangles, 33869, 3700 of 87524 triangles
> select clear
> select add #2.94
1 model selected
> select add #2.33
2 models selected
Grouped 2 regions
> select #2.97
1 model selected
> select add #2.40
2 models selected
Grouped 2 regions
> select #2.22
1 model selected
> select add #2.71
2 models selected
> select #2.71
1 model selected
> select add #2.44
2 models selected
Grouped 2 regions
> select #2.78
1 model selected
> select add #2.4
2 models selected
Grouped 2 regions
Drag select of 33841, 907 of 101988 triangles, 33845, 178 of 129652 triangles,
33856, 10 of 117036 triangles, 33868, 71 of 119020 triangles
> select clear
> select #2.4
1 model selected
Only showing 120 of 8781 regions.
Showing 120 of 8781 region surfaces
> select #2.78
1 model selected
> select add #2.43
2 models selected
Grouped 2 regions
> select #2.94
1 model selected
> select add #2.77
2 models selected
> select add #2.53
3 models selected
Grouped 3 regions
> select add #2.22
2 models selected
Grouped 2 regions
> select #2.115
1 model selected
> select add #2.7
2 models selected
Grouped 2 regions
> select add #2.48
2 models selected
> select add #2.89
3 models selected
> select add #2.2
4 models selected
Grouped 4 regions
> ui tool show "Color Actions"
> color sel indigo
> color sel slate gray
> color sel steel blue
Ungrouped to 4 regions
> select #2.77
1 model selected
> select #2.7
1 model selected
> select add #2.53
2 models selected
> select add #2.48
3 models selected
Grouped 3 regions
> select #2.114
1 model selected
> select add #2.63
2 models selected
Grouped 2 regions
> select #2.120
1 model selected
> select add #2.18
2 models selected
Grouped 2 regions
> select #2.79
1 model selected
> select add #2.124
2 models selected
> select add #2.39
3 models selected
Grouped 3 regions
> select #2.93
1 model selected
> select add #2.113
2 models selected
> select add #2.67
3 models selected
Grouped 3 regions
> select add #2.65
2 models selected
Grouped 2 regions
> select add #2.32
2 models selected
Grouped 2 regions
> select #2.82
1 model selected
> select add #2.52
2 models selected
Grouped 2 regions
> select add #2.10
2 models selected
Grouped 2 regions
Only showing 120 of 8764 regions.
Showing 120 of 8764 region surfaces
> select #2.94
1 model selected
> select add #2.114
2 models selected
Grouped 2 regions
> select add #2.49
2 models selected
Grouped 2 regions
> ui tool show "Color Actions"
> color sel medium sea green
> color sel pale violet red
> select clear
> select #2.118
1 model selected
> select add #2.18
2 models selected
Grouped 2 regions
> select #2.93
1 model selected
> select add #2.34
2 models selected
> select add #2.62
3 models selected
Grouped 3 regions
> select clear
> select #2.71
1 model selected
> select clear
> select #2.71
1 model selected
> select add #2.37
2 models selected
Grouped 2 regions
> select #2.66
1 model selected
> select add #2.27
2 models selected
Grouped 2 regions
> select #2.113
1 model selected
> select add #2.27
2 models selected
Grouped 2 regions
Only showing 120 of 8756 regions.
Showing 120 of 8756 region surfaces
> select #2.44
1 model selected
> select #2.5
1 model selected
Only showing 120 of 8756 regions.
Showing 120 of 8756 region surfaces
> select #2.113
1 model selected
> select add #2.20
2 models selected
Grouped 2 regions
> select #2.52
1 model selected
> select add #2.1
2 models selected
Grouped 2 regions
> select #2.94
1 model selected
> select add #2.34
2 models selected
Grouped 2 regions
> select #2.118
1 model selected
> select add #2.36
2 models selected
Grouped 2 regions
> select #2.91
1 model selected
> select add #2.23
2 models selected
Grouped 2 regions
> select #2.99
1 model selected
> select add #2.12
2 models selected
Grouped 2 regions
> select #2.31
1 model selected
> select add #2.23
2 models selected
Grouped 2 regions
> select #2.110
1 model selected
> select add #2.11
2 models selected
Grouped 2 regions
> ui tool show "Color Actions"
> color sel light pink
> color sel old lace
> color sel snow
> color sel ivory
> color sel honeydew
> color sel khaki
> color sel misty rose
> color sel bisque
> color sel plum
> color sel lavender
> color sel light cyan
> color sel pale green
> color sel light coral
> select #2.73
1 model selected
> select add #2.4
2 models selected
Grouped 2 regions
Only showing 120 of 8747 regions.
Showing 120 of 8747 region surfaces
> select #2.31
1 model selected
> select add #2.38
2 models selected
Grouped 2 regions
Only showing 120 of 8746 regions.
Showing 120 of 8746 region surfaces
> select #2.84
1 model selected
> select add #2.14
2 models selected
Grouped 2 regions
> select add #2.86
2 models selected
Grouped 2 regions
> select #2.78
1 model selected
> select add #2.103
2 models selected
> select add #2.29
3 models selected
Grouped 3 regions
> select #2.123
1 model selected
> select add #2.51
2 models selected
> select add #2.97
3 models selected
Grouped 3 regions
> select #2.82
1 model selected
> select add #2.35
2 models selected
Grouped 2 regions
> ui tool show "Color Actions"
> color sel tan
> color sel pale green
> color sel orchid
> select #2.53
1 model selected
> select add #2.28
2 models selected
Grouped 2 regions
> select #2.90
1 model selected
> select add #2.27
2 models selected
Grouped 2 regions
> select #2.65
1 model selected
> select add #2.11
2 models selected
Grouped 2 regions
> ui tool show "Color Actions"
> color sel slate blue
> select clear
> select #2.79
1 model selected
> select add #2.11
2 models selected
Grouped 2 regions
> color #2.11 purple
> select #2.118
1 model selected
> select add #2.12
2 models selected
Grouped 2 regions
> select #2.77
1 model selected
> select add #2.52
2 models selected
Grouped 2 regions
> select clear
> save /home/pauline/Desktop/Chimera_segment_map/segment1.cxs
> select #2.38
1 model selected
> select add #2.49
2 models selected
Grouped 2 regions
> color #2.38 orange
> select #2.2
1 model selected
> select #2.102
1 model selected
> select add #2.38
2 models selected
Grouped 2 regions
> color #2.38 yellow
> color #2.38 orange
> select add #2.61
2 models selected
Grouped 2 regions
> color #2.38 orange
> select #2.110
1 model selected
> select add #2.47
2 models selected
Grouped 2 regions
> select #2.116
1 model selected
> select add #2.69
2 models selected
Grouped 2 regions
> select clear
> select #2.71
1 model selected
> select add #2.43
2 models selected
Grouped 2 regions
> select #2.59
1 model selected
> select add #2.13
2 models selected
Grouped 2 regions
> select add #2.70
2 models selected
Grouped 2 regions
> select #2.73
1 model selected
> select #2.24
1 model selected
> color #2.24 yellow
> select add #2.73
2 models selected
Grouped 2 regions
> color #2.24 yellow
> select #2.83
1 model selected
> select add #2.47
2 models selected
Grouped 2 regions
> select #2.119
1 model selected
> select add #2.20
2 models selected
Grouped 2 regions
> select #2.91
1 model selected
> select add #2.36
2 models selected
Grouped 2 regions
Grouped 1 regions
> select #2.60
1 model selected
> select add #2.52
2 models selected
Grouped 2 regions
> select #2.16
1 model selected
> color #2.16 cornflower blue
> select #2.95
1 model selected
> select add #2.46
2 models selected
> select add #2.107
3 models selected
Grouped 3 regions
> select add #2.7
2 models selected
Grouped 2 regions
> select clear
Drag select of 33741, 756 of 21768 triangles, 33864, 606 of 96060 triangles,
33869, 144 of 87524 triangles, 33892, 548 of 129484 triangles, 30818, 180 of
2440 triangles, 33903, 497 of 120104 triangles, 33904, 581 of 132068
triangles, 33913, 28 of 114228 triangles, 33920, 347 of 34976 triangles,
33926, 306 of 113844 triangles
> select clear
> select #2.85
1 model selected
> select add #2.112
2 models selected
Grouped 2 regions
> select #2.87
1 model selected
> select add #2.75
2 models selected
> select add #2.48
3 models selected
> select add #2.114
4 models selected
Grouped 4 regions
> select add #2.57
2 models selected
Grouped 2 regions
> set bgColor white
> set bgColor #ffffff00
> select clear
> select #2.98
1 model selected
Ungrouped to 2 regions
> select #2.53
1 model selected
> select add #2.45
2 models selected
Grouped 2 regions
> select #2.57
1 model selected
Ungrouped to 2 regions
> select #2.53
1 model selected
> select add #2.45
2 models selected
Grouped 2 regions
> select #2.59
1 model selected
> select add #2.45
2 models selected
Grouped 2 regions
> select #2.10
1 model selected
> select #2.63
1 model selected
> select #2.101
1 model selected
> select add #2.33
2 models selected
Grouped 2 regions
> select #2.89
1 model selected
> select add #2.39
2 models selected
Grouped 2 regions
> select #2.100
1 model selected
> select add #2.56
2 models selected
Grouped 2 regions
> save /home/pauline/Desktop/Chimera_segment_map/segment1.cxs
> select clear
> select #2.7
1 model selected
Ungrouped to 2 regions
> select #2.57
1 model selected
Ungrouped to 2 regions
> select #2.7
1 model selected
Ungrouped to 2 regions
> select #2.57
1 model selected
Ungrouped to 2 regions
> select #2.7
1 model selected
> select #2.56
1 model selected
Ungrouped to 3 regions
> select #2.61
1 model selected
> select add #2.69
2 models selected
Grouped 2 regions
> select add #2.109
2 models selected
Grouped 2 regions
> select #2.57
1 model selected
> select add #2.7
2 models selected
> select add #2.60
3 models selected
> select add #2.59
4 models selected
Grouped 4 regions
> select #2.65
1 model selected
> select add #2.56
2 models selected
Grouped 2 regions
> select clear
> ui mousemode right "tape measure"
> ui mousemode right select
> select #2.25
1 model selected
Only showing 120 of 8708 regions.
Showing 120 of 8708 region surfaces
> select #2.89
1 model selected
> select add #2.97
2 models selected
> select add #2.11
3 models selected
Grouped 3 regions
> color #2.11 purple
> select #2.59
1 model selected
> select add #2.3
2 models selected
Grouped 2 regions
> select #2.70
1 model selected
> select add #2.109
2 models selected
Grouped 2 regions
> select add #2.50
2 models selected
Grouped 2 regions
> select #2.119
1 model selected
> select add #2.24
2 models selected
Grouped 2 regions
> color #2.24 yellow
> select #2.95
1 model selected
> select add #2.20
2 models selected
Grouped 2 regions
> select #2.36
1 model selected
> select add #2.114
2 models selected
> select subtract #2.114
1 model selected
> select clear
> select #2.114
1 model selected
> select add #2.36
2 models selected
Grouped 2 regions
> select #2.112
1 model selected
> select add #2.32
2 models selected
Grouped 2 regions
> select #2.71
1 model selected
> select add #2.23
2 models selected
Grouped 2 regions
> select add #2.55
2 models selected
Grouped 2 regions
> select #2.98
1 model selected
> select add #2.27
2 models selected
Grouped 2 regions
> select #2.107
1 model selected
> select add #2.4
2 models selected
Grouped 2 regions
> select #2.75
1 model selected
> select add #2.31
2 models selected
Grouped 2 regions
> select #2.120
1 model selected
> select add #2.79
2 models selected
Drag select of 33923, 6 of 111404 triangles, 33949, 7 of 132780 triangles
> select #2.13
1 model selected
> select #2.79
1 model selected
> select add #2.13
2 models selected
Grouped 2 regions
> select #2.120
1 model selected
> select add #2.13
2 models selected
Grouped 2 regions
> select #2.82
1 model selected
> select add #2.42
2 models selected
Grouped 2 regions
> select #2.57
1 model selected
> select add #2.25
2 models selected
Grouped 2 regions
> select add #2.26
2 models selected
Grouped 2 regions
> select #2.41
1 model selected
> select add #2.78
2 models selected
Grouped 2 regions
> select #2.110
1 model selected
> select add #2.1
2 models selected
Grouped 2 regions
> select #2.103
1 model selected
> select add #2.38
2 models selected
Grouped 2 regions
> color #2.38 orange
> select clear
> select #2.86
1 model selected
> select add #2.52
2 models selected
Grouped 2 regions
> select #2.74
1 model selected
> select add #2.21
2 models selected
Grouped 2 regions
> ui tool show "Color Actions"
> color sel chocolate
> select #2.23
1 model selected
> select clear
> select #2.87
1 model selected
> select add #2.5
2 models selected
Grouped 2 regions
> select clear
> ui tool show "Side View"
> lighting soft
> graphics silhouettes true
> graphics silhouettes false
> ui tool show "Scale Bar"
> scalebar
> scalebar color #c64600
> scalebar color #613583
> scalebar color #cdab8f
> scalebar color #77767b
> save /home/pauline/Desktop/Chimera_segment_map/tube_horizontal_long.tif
> width 832 height 747 supersample 3 transparentBackground true
> save
> /home/pauline/Desktop/Chimera_segment_map/tube_horizontal_long_dimer_angle.tif
> width 832 height 747 supersample 3 transparentBackground true
> lighting flat
[Repeated 1 time(s)]
> lighting full
> save
> /home/pauline/Desktop/Chimera_segment_map/tube_horizontal_long_dimer_angle2.tif
> width 832 height 747 supersample 3 transparentBackground true
> save
> /home/pauline/Desktop/Chimera_segment_map/tube_horizontal_long_dimer_head1.tif
> width 832 height 747 supersample 3 transparentBackground true
> save
> /home/pauline/Desktop/Chimera_segment_map/tube_horizontal_long_dimer_head2.tif
> width 832 height 747 supersample 3 transparentBackground true
> save
> /home/pauline/Desktop/Chimera_segment_map/tube_horizontal_long_dimer_inside_tails1.tif
> width 832 height 747 supersample 3 transparentBackground true
> lighting soft
> lighting shadows true intensity 0.5
> lighting shadows false
> lighting shadows true
> graphics silhouettes false
> graphics silhouettes true
> graphics silhouettes false
> lighting simple
> lighting full
> lighting soft
> lighting shadows true intensity 0.5
> lighting soft
> lighting flat
> lighting soft
> save
> /home/pauline/Desktop/Chimera_segment_map/tube_horizontal_long_dimer_inside_tails2.tif
> width 832 height 747 supersample 3
> save
> /home/pauline/Desktop/Chimera_segment_map/tube_horizontal_long_dimer_inside_tails3.tif
> width 832 height 747 supersample 3 transparentBackground true
> save
> /home/pauline/Desktop/Chimera_segment_map/tube_horizontal_long_dimer_outside_tails1.tif
> width 832 height 747 supersample 3
> lighting flat
> lighting full
> lighting simple
> lighting shadows true
> lighting soft
> save
> /home/pauline/Desktop/Chimera_segment_map/tube_horizontal_long_dimer_outside_tails2.tif
> width 832 height 747 supersample 3
> save
> /home/pauline/Desktop/Chimera_segment_map/tube_horizontal_long_dimer_outside_tails3.tif
> width 832 height 747 supersample 3 transparentBackground true
> lighting simple
> lighting flat
> lighting soft
> lighting flat
> lighting soft
> save /home/pauline/Desktop/Chimera_segment_map/tube_top1.tif width 832
> height 747 supersample 3 transparentBackground true
> lighting flat
> save /home/pauline/Desktop/Chimera_segment_map/tube_top2.tif width 832
> height 747 supersample 3 transparentBackground true
> lighting soft
> graphics silhouettes false
> graphics silhouettes true
> lighting flat
> lighting soft
> lighting simple
> lighting soft
> ui mousemode right "tape measure"
[Repeated 2 time(s)]
> ui mousemode right select
> select #2.31
1 model selected
> select #2.37
1 model selected
> select add #2.11
2 models selected
> select ~sel
99 models selected
> transparency sel &
> #2.1-10,12-36,38-51,53-54,56,58,60-69,72-73,76-77,80-81,83-85,88,90-94,96,99-102,104-106,108,111,113,115-118#!2
> 50
> lighting soft
> lighting flat
> lighting soft
> select #2.37
1 model selected
> select add #2.11
2 models selected
> lighting soft
> select
101 models selected
> lighting soft
> transparency sel & #2 0
> select clear
> select #2.11
1 model selected
> select #2.31
1 model selected
> select #2.11
1 model selected
> select add #2.37
2 models selected
> select #2.31
1 model selected
> select add #2.28
2 models selected
> select ~sel
99 models selected
> select
101 models selected
> select #2.36
1 model selected
> select add #2.23
2 models selected
> select ~sel
99 models selected
> select #2.23
1 model selected
> select add #2.36
2 models selected
> select clear
> lighting soft
> lighting flat
> lighting soft
> lighting simple
> lighting full
> lighting soft
> save /home/pauline/Desktop/Chimera_segment_map/dimer_convex1.tif width 832
> height 747 supersample 3 transparentBackground true
> save /home/pauline/Desktop/Chimera_segment_map/dimer_tail_push1.tif width
> 832 height 747 supersample 3
> save /home/pauline/Desktop/Chimera_segment_map/dimer_tail_push1.tif width
> 832 height 747 supersample 3 transparentBackground true
> save /home/pauline/Desktop/Chimera_segment_map/dimer_tail_push2.tif width
> 832 height 747 supersample 3 transparentBackground true
> save /home/pauline/Desktop/Chimera_segment_map/dimer_tail_push3.tif width
> 832 height 747 supersample 3 transparentBackground true
> save /home/pauline/Desktop/Chimera_segment_map/dimer_tail_push4.tif width
> 832 height 747 supersample 3 transparentBackground true
Only showing 120 of 8683 regions.
Showing 120 of 8683 region surfaces
> select #2.95
1 model selected
> select add #2.36
2 models selected
Grouped 2 regions
> select #2.97
1 model selected
> select add #2.36
2 models selected
Grouped 2 regions
> select #2.70
1 model selected
> select add #2.50
2 models selected
Grouped 2 regions
> select #2.114
1 model selected
> select add #2.9
2 models selected
Grouped 2 regions
> select #2.89
1 model selected
> select add #2.4
2 models selected
Grouped 2 regions
> select #2.74
1 model selected
> select add #2.27
2 models selected
Grouped 2 regions
> select #2.52
1 model selected
> select add #2.20
2 models selected
Grouped 2 regions
> select #2.110
1 model selected
> select add #2.23
2 models selected
Grouped 2 regions
> select #2.98
1 model selected
> select add #2.26
2 models selected
Grouped 2 regions
> select #2.79
1 model selected
> select add #2.11
2 models selected
Grouped 2 regions
> color #2.11 purple
> select #2.83
1 model selected
> select add #2.14
2 models selected
Grouped 2 regions
> select #2.120
1 model selected
> select add #2.5
2 models selected
Grouped 2 regions
> select #2.82
1 model selected
> select add #2.5
2 models selected
Grouped 2 regions
> select #2.55
1 model selected
> select add #2.47
2 models selected
Grouped 2 regions
> select #2.84
1 model selected
> select add #2.49
2 models selected
Grouped 2 regions
> select add #2.92
2 models selected
Grouped 2 regions
> select #2.107
1 model selected
> select add #2.88
2 models selected
Grouped 2 regions
> select #2.118
1 model selected
> select add #2.54
2 models selected
Grouped 2 regions
> select #2.119
1 model selected
> select add #2.2
2 models selected
Grouped 2 regions
> select #2.86
1 model selected
> select add #2.19
2 models selected
Grouped 2 regions
> select #2.117
1 model selected
> select add #2.19
2 models selected
Grouped 2 regions
Drag select of 33749, 37 of 7176 triangles, 33847, 4984 of 119480 triangles,
32241, 203 of 4332 triangles, 33856, 627 of 117036 triangles, 33864, 545 of
96060 triangles, 33892, 2987 of 129484 triangles, 33934, 2225 of 60440
triangles, 33949, 598 of 132780 triangles, 33962, 687 of 116112 triangles,
33973, 1513 of 125440 triangles, 33974, 2156 of 94268 triangles, 33975, 2079
of 119072 triangles, 33977, 1318 of 88152 triangles, 33978, 383 of 123284
triangles, 33979, 276 of 90872 triangles
> select clear
> save /home/pauline/Desktop/Chimera_segment_map/tube_inside_holes1.tif width
> 832 height 747 supersample 3 transparentBackground true
> save /home/pauline/Desktop/Chimera_segment_map/segment1.cxs includeMaps true
> save /home/pauline/Desktop/Chimera_segment_map/map_sharp_segment.cmap models
> #1
> save /home/pauline/Desktop/Chimera_segment_map/segment.seg models #2
> select #2.30
1 model selected
> select #2.24
1 model selected
Only showing 120 of 8662 regions.
Showing 120 of 8662 region surfaces
> select #2.83
1 model selected
> select add #2.39
2 models selected
Grouped 2 regions
> select #2.118
1 model selected
> select add #2.89
2 models selected
> select add #2.41
3 models selected
Grouped 3 regions
> select #2.114
1 model selected
> select add #2.2
2 models selected
Grouped 2 regions
> select #2.79
1 model selected
> select add #2.28
2 models selected
Grouped 2 regions
> select #2.95
1 model selected
> select add #2.8
2 models selected
Grouped 2 regions
> select #2.109
1 model selected
> select add #2.20
2 models selected
Grouped 2 regions
> select #2.26
1 model selected
> select #2.84
1 model selected
> select add #2.25
2 models selected
Grouped 2 regions
> select #2.107
1 model selected
> select add #2.31
2 models selected
Grouped 2 regions
> select #2.86
1 model selected
> select add #2.11
2 models selected
Grouped 2 regions
> select #2.74
1 model selected
> select add #2.11
2 models selected
Grouped 2 regions
> select #2.82
1 model selected
> select add #2.16
2 models selected
Grouped 2 regions
> select #2.110
1 model selected
> select add #2.35
2 models selected
Grouped 2 regions
> select #2.106
1 model selected
> select add #2.19
2 models selected
Grouped 2 regions
> lighting full
> toolshed show
> select clear
Drag select of 33847, 3481 of 119480 triangles, 33852, 6807 of 119684
triangles, 33887, 2600 of 95920 triangles, 33897, 5843 of 123788 triangles,
30364, 215 of 2364 triangles, 33907, 2394 of 83112 triangles, 33914, 4450 of
138780 triangles, 33940, 1374 of 60684 triangles, 33949, 174 of 132780
triangles, 33952, 5554 of 110880 triangles, 33964, 5519 of 110156 triangles,
33965, 6846 of 95276 triangles, 33970, 4784 of 124564 triangles, 33976, 7243
of 130636 triangles, 33982, 5841 of 124504 triangles, 33985, 8680 of 25224
triangles, 33994, 3344 of 117424 triangles, 33996, 78 of 118460 triangles
> select clear
Only showing 120 of 8648 regions.
Showing 120 of 8648 region surfaces
> select clear
> select #2.70
1 model selected
> select add #2.34
2 models selected
Grouped 2 regions
> select #2.95
1 model selected
> select add #2.21
2 models selected
Grouped 2 regions
> select #2.79
1 model selected
> select add #2.9
2 models selected
Grouped 2 regions
> select #2.74
1 model selected
> select add #2.13
2 models selected
Grouped 2 regions
> select #2.35
1 model selected
> select #2.118
1 model selected
> select add #2.43
2 models selected
Grouped 2 regions
> select #2.84
1 model selected
> select add #2.19
2 models selected
Grouped 2 regions
> select clear
[Repeated 1 time(s)]
> select #2.114
1 model selected
> select add #2.23
2 models selected
Grouped 2 regions
> select clear
> select #2.110
1 model selected
> select add #2.4
2 models selected
Grouped 2 regions
> select #2.89
1 model selected
> select add #2.6
2 models selected
Grouped 2 regions
> select #2.82
1 model selected
> select add #2.26
2 models selected
Grouped 2 regions
> select #2.107
1 model selected
> select add #2.47
2 models selected
Grouped 2 regions
> select #2.120
1 model selected
> select add #2.18
2 models selected
Grouped 2 regions
> select #2.106
1 model selected
> select add #2.23
2 models selected
Grouped 2 regions
> select #2.83
1 model selected
> select add #2.42
2 models selected
> select #2.83
1 model selected
> select add #2.44
2 models selected
Grouped 2 regions
> select #2.42
1 model selected
Only showing 120 of 8634 regions.
Showing 120 of 8634 region surfaces
> select #2.70
1 model selected
> select add #2.27
2 models selected
Grouped 2 regions
> select #2.89
1 model selected
> select add #2.22
2 models selected
> select #2.84
1 model selected
> select add #2.9
2 models selected
Grouped 2 regions
> select #2.89
1 model selected
> select add #2.22
2 models selected
Grouped 2 regions
> select #2.100
1 model selected
> select add #2.104
2 models selected
Grouped 2 regions
> select #2.114
1 model selected
> select add #2.39
2 models selected
Grouped 2 regions
> select #2.95
1 model selected
> select add #2.39
2 models selected
Grouped 2 regions
> select #2.107
1 model selected
> select add #2.13
2 models selected
Grouped 2 regions
> select clear
> select #2.120
1 model selected
> select add #2.8
2 models selected
Grouped 2 regions
> select #2.74
1 model selected
> select add #2.24
2 models selected
> select #2.23
1 model selected
> select add #2.74
2 models selected
Grouped 2 regions
> select #2.118
1 model selected
> select add #2.50
2 models selected
Grouped 2 regions
> select #2.55
1 model selected
> select add #2.7
2 models selected
Grouped 2 regions
> select #2.85
1 model selected
> select add #2.15
2 models selected
Grouped 2 regions
> select #2.82
1 model selected
> select add #2.15
2 models selected
Grouped 2 regions
> select clear
> view orient
> view name p#1
> view name p#2
> view name p#3
> view name p#4
> view name p#5
> fly p#1 p#2
[Repeated 2 time(s)]
> wait
> fly p#2 60 p#3
> fly p#1 p#2
> wait
> fly p#2 60 p#4
> fly p#1 p#2
> wait
> crossfade
> p#4
Unknown command: p#4
> fly p#1 p#2
> wait
> crossfade
> show p#4
Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models',
'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword
> fly p#1 p#2
> wait
> fly p#2 p#3 P3#4
fly: Unknown position name "P3#4"
> fly p#1 p#2
> wait
> fly p#2 p#3 p3 p#4
fly: Unknown position name "p3"
> fly p#1 p#2
> wait
> fly p#2 p#3 p#4
> view name p#3
> fly p#1 p#2 p#3
> fly p#1 p#2
> view namep#1
Expected an objects specifier or a view name or a keyword
> view name p#1
> view name p#2
> view name p#3
> select #2.24
1 model selected
> select add #2.8
2 models selected
Only showing 120 of 8621 regions.
Showing 120 of 8621 region surfaces
> select clear
> fly p#1 p#2
> wait
> crossfade
> hide ~#2.8 #2.24
Can not turn on clipping since there are no models to clip
[Repeated 5 time(s)]
> view orient
> view
Only showing 120 of 8621 regions.
Showing 120 of 8621 region surfaces
Only showing 120 of 8621 regions.
Showing 120 of 8621 region surfaces
> view
Only showing 120 of 8621 regions.
Showing 120 of 8621 region surfaces
> view
> select clear
[Repeated 1 time(s)]Only showing 120 of 8621 regions.
Showing 120 of 8621 region surfaces
> show #!2 models
> select clear
> view orient
> scalebar off
> scalebar color #77767b
> view name s1
> roll y 2 180
> roll y 5 180
> roll y 1 180
> select #2.100
1 model selected
> select add #2.71
2 models selected
> select add #2.5
3 models selected
Grouped 3 regions
> select #2.85
1 model selected
> select add #2.4
2 models selected
Grouped 2 regions
> select #2.95
1 model selected
> select add #2.79
2 models selected
> select add #2.30
3 models selected
> select #2.30
1 model selected
> select #2.30
1 model selected
> select add #2.95
2 models selected
Grouped 2 regions
> select #2.79
1 model selected
> select add #2.10
2 models selected
Grouped 2 regions
> select add #2.120
2 models selected
Grouped 2 regions
> select #2.4
1 model selected
> select add #2.74
2 models selected
Grouped 2 regions
> select #2.97
1 model selected
> select add #2.22
2 models selected
Grouped 2 regions
> select #2.77
1 model selected
> select add #2.43
2 models selected
Grouped 2 regions
> select #2.118
1 model selected
> select add #2.84
2 models selected
Grouped 2 regions
> select add #2.41
2 models selected
Grouped 2 regions
> select #2.55
1 model selected
> select add #2.32
2 models selected
Grouped 2 regions
> select clear
Drag select of 31276, 1329 of 3660 triangles, 33946, 21930 of 125168
triangles, 34003, 9821 of 126176 triangles, 34026, 1990 of 122936 triangles,
34029, 2089 of 125308 triangles
> select clear
Drag select of 33749, 33856, 65677 of 117036 triangles, 33083, 1459 of 4824
triangles, 29640, 2540 of 2880 triangles, 33914, 19407 of 138780 triangles,
31194, 2416 of 2556 triangles, 33949, 82519 of 132780 triangles, 33993, 15725
of 106988 triangles, 33996, 75922 of 118460 triangles, 33997, 73451 of 137344
triangles, 33999, 8193 of 128296 triangles, 34000, 37558 of 120692 triangles,
34011, 76116 of 121432 triangles, 34024, 39027 of 119468 triangles, 34029,
39633 of 125308 triangles, 29259, 30858, 1026 of 1808 triangles
> select clear
> view name S2
> fly s1 s2
fly: Unknown position name "s2"
> fly s1 S2
> roll y 1 90
> wait
> fly s1 S2
> roll y 1 90
> wait
> crossfade
> wait
wait requires a frame count argument unless motion is in progress
> fly s1 S2
[Repeated 1 time(s)]
> wait
> roll y 1 90
> wait
> crossfade
> wait
wait requires a frame count argument unless motion is in progress
> fly s1 S2
[Repeated 1 time(s)]
> wait
> roll y 1 90
> wait
> crossfade
> wait
wait requires a frame count argument unless motion is in progress
> fly s1 S2
[Repeated 1 time(s)]
> wait
> roll y 1 90
> wait
> crossfade
> wait
wait requires a frame count argument unless motion is in progress
> fly S2 s1
> fly s1 S2
> wait
> roll y 1 90
> wait
> fly S2 s1
> fly s1 S2
> wait
> roll y 1 90
> wait
> fly S2 s1
> wait roll y 2 180
Expected an integer >= 1 or a keyword
> fly s1 S2
> wait
> roll y 1 90
> wait
> fly S2 s1
> wait
> roll y 2 180
> movie record
> fly s1 S2
> wait
> roll y 1 90
> wait
> fly S2 s1
> wait
> roll y 2 180
> save /home/pauline/Desktop/Chimera_segment_map/segmented_sharpened.ccp4
> models #1
Traceback (most recent call last):
File "/usr/lib64/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "/usr/lib64/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/movie/movie.py", line 172, in capture_image
i.save(save_path, self.img_fmt)
File "/usr/lib64/ucsf-chimerax/lib/python3.9/site-packages/PIL/Image.py", line
2353, in save
save_handler(self, fp, filename)
File "/usr/lib64/ucsf-chimerax/lib/python3.9/site-
packages/PIL/PpmImagePlugin.py", line 324, in _save
ImageFile._save(im, fp, [("raw", (0, 0) + im.size, 0, (rawmode, 0, 1))])
File "/usr/lib64/ucsf-chimerax/lib/python3.9/site-packages/PIL/ImageFile.py",
line 505, in _save
_encode_tile(im, fp, tile, bufsize, fh)
File "/usr/lib64/ucsf-chimerax/lib/python3.9/site-packages/PIL/ImageFile.py",
line 532, in _encode_tile
s = encoder.encode_to_file(fh, bufsize)
OSError: [Errno 28] No space left on device
Error processing trigger "frame drawn":
OSError: [Errno 28] No space left on device
File "/usr/lib64/ucsf-chimerax/lib/python3.9/site-packages/PIL/ImageFile.py",
line 532, in _encode_tile
s = encoder.encode_to_file(fh, bufsize)
See log for complete Python traceback.
> movie record
Already recording a movie
> encode /home/pauline/Desktop/tube_movie.mp4
Unknown command: encode /home/pauline/Desktop/tube_movie.mp4
> movie encode /home/pauline/Desktop/tube_movie.mp4
Movie saved to /home/pauline/Desktop/tube_movie.mp4
Drag select of 33749, 165 of 7176 triangles, 33856, 64 of 117036 triangles,
33892, 284 of 129484 triangles, 33940, 428 of 60684 triangles, 33979, 141 of
90872 triangles, 33996, 147 of 118460 triangles, 33999, 76 of 128296
triangles, 34011, 93 of 121432 triangles, 34012, 349 of 89728 triangles,
34017, 226 of 96280 triangles
> select clear
> select #2.5
1 model selected
> select #2.27
1 model selected
> select clear
> view name c1
> select #2.27
1 model selected
> select add #2.5
2 models selected
> select ~sel
112 models selected
> transparency sel &
> #2.1-4,6-26,28-54,56-70,72-73,75-76,78,80-83,86-94,96,98-99,101-117,119#!2
> 50
> select clear
> view name c2
> transparency sel 0
Drag select of 34024, 155 of 119468 triangles, 34025, 168 of 137044 triangles,
34036, 172 of 110972 triangles
> select clear
> select #2.42
1 model selected
> select add #2.22
2 models selected
> select ~sel
112 models selected
> select ~sel
2 models selected
> select ~sel
112 models selected
> select clear
> view name c3
> view name c4
> fly c1 c2
[Repeated 1 time(s)]
> wait
> roll y 2 60
> fly c1 c2
> wait
> roll y 2 30
> fly c1 c2
> wait
> roll y 1 30
> wait
> crossfade
> fly c3 c4
> fly c1 c2
> wait
> roll y 1 30
> wait
> crossfade
> fly c3 c4
> fly c1 c2
> wait
> roll y 1 30
> wait
> crossfade
> fly c3 c4
> wait
> fly c4 c1
> fly c1 c2
> wait
> roll y 1 30
> wait
> crossfade
> fly c3 c4
> wait
> fly c4 c1
> wait
> roll y 1 35
> fly c1 c2
> wait
> roll y 1 30
> wait
> fly c3 c4
> wait
> fly c4 c1
> wait
> roll y 1 -35
Missing or invalid "frames" argument: Must be greater than or equal to 1
> fly c1 c2
> wait
> roll y 1 30
> wait
> fly c3 c4
> wait
> fly c4 c1
> wait
> roll y 1 40
> fly c1 c2
> wait
> roll y 1 30
> wait
> fly c3 c4
> wait
> fly c4 c1
> wait
> roll z 1 40
> fly c1 60 c2
> wait
> roll y 1 30
> wait
> fly c3 c4
> wait
> fly c4 c1
> wait
> roll z 1 40
> fly c1 60 c2
> wait
> roll y 1 30
> wait
> fly c3 c4
> wait
> fly c4 c1
> wait
> roll z 1 40
> fly c1 60 c2
> wait
> roll y 1 30
> wait
> fly c2 60 c3
> wait
> fly c3 c4
> wait
> fly c4 c1
> wait
> roll z 1 40
> movie record
> fly c1 60 c2
> wait
> roll y 1 30
> wait
> fly c2 60 c3
> wait
> fly c3 c4
> wait
> fly c4 c1
> wait
> roll z 1 40
Traceback (most recent call last):
File "/usr/lib64/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke
return self._func(self._name, data)
File "/usr/lib64/ucsf-chimerax/lib/python3.9/site-
packages/chimerax/movie/movie.py", line 172, in capture_image
i.save(save_path, self.img_fmt)
File "/usr/lib64/ucsf-chimerax/lib/python3.9/site-packages/PIL/Image.py", line
2353, in save
save_handler(self, fp, filename)
File "/usr/lib64/ucsf-chimerax/lib/python3.9/site-
packages/PIL/PpmImagePlugin.py", line 324, in _save
ImageFile._save(im, fp, [("raw", (0, 0) + im.size, 0, (rawmode, 0, 1))])
File "/usr/lib64/ucsf-chimerax/lib/python3.9/site-packages/PIL/ImageFile.py",
line 505, in _save
_encode_tile(im, fp, tile, bufsize, fh)
File "/usr/lib64/ucsf-chimerax/lib/python3.9/site-packages/PIL/ImageFile.py",
line 532, in _encode_tile
s = encoder.encode_to_file(fh, bufsize)
OSError: [Errno 28] No space left on device
Error processing trigger "frame drawn":
OSError: [Errno 28] No space left on device
File "/usr/lib64/ucsf-chimerax/lib/python3.9/site-packages/PIL/ImageFile.py",
line 532, in _encode_tile
s = encoder.encode_to_file(fh, bufsize)
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 525.125.06
OpenGL renderer: Quadro P4000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.9.11
Locale: en_CA.UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: xcb
XDG_SESSION_TYPE=x11
DESKTOP_SESSION=xfce
XDG_SESSION_DESKTOP=xfce
XDG_CURRENT_DESKTOP=XFCE
DISPLAY=:1.0
Manufacturer: Dell Inc.
Model: Precision 7820 Tower
OS: Gentoo 2.13 n/a
Architecture: 64bit ELF
Virtual Machine: none
CPU: 32 Intel(R) Xeon(R) Silver 4110 CPU @ 2.10GHz
Cache Size: 11264 KB
Memory:
total used free shared buff/cache available
Mem: 157Gi 44Gi 51Gi 54Gi 60Gi 56Gi
Swap: 159Gi 31Gi 128Gi
Graphics:
0000:5b:00.0 VGA compatible controller [0300]: NVIDIA Corporation GP106 [GeForce GTX 1060 6GB] [10de:1c03] (rev a1)
Subsystem: Micro-Star International Co., Ltd. [MSI] GP106 [GeForce GTX 1060 6GB] [1462:3283]
Kernel driver in use: nvidia
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2023.5.7
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-LinuxSupport: 1.0.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
distro: 1.7.0
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.9.26
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 23.1
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → UI |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → No space left on device saving thumbnail |
comment:2 by , 2 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | No space left on device saving thumbnail → No space left on device saving movie |
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