![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Aug 28, 2023:
- 11:49 PM Ticket #9657 (Crash using open/save dialog) created by
- […]
- 11:47 PM Ticket #9656 (Crash using open/save dialog) created by
- […]
- 11:21 PM Ticket #9645 (Toolshed compatibility reporting wrong) closed by
- limitation: Not compatible is correct. I'll look into giving the reason why in …
- 10:56 PM Ticket #9644 (Toolshed search broken) closed by
- fixed: Fixed. Was typo in conversion to Django 4.
- 7:02 PM Ticket #9651 (OpenXR: IndexError into frame buffers) closed by
- fixed: Fixed. Surprisingly my tests on Vive Pro with OpenXR never give this …
- 6:19 PM Ticket #9655 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 6:15 PM Ticket #9638 (glDrawBuffer: invalid operation while setting volume level) closed by
- can't reproduce: OpenGL graphics error, apparently no GL_BACK buffer when expose event …
- 5:29 PM ChangeLog edited by
- (diff)
- 5:27 PM ChangeLog edited by
- (diff)
- 5:13 PM Ticket #9604 (Mol2 type not updated) closed by
- fixed: ChimeraX will now not output the mol2 types from the input if it seems …
- 5:03 PM Ticket #9635 (Read HDF5 during session restore: file signature not found) closed by
- nonchimerax: When you try to open a ChimeraX session open …
- 4:39 PM Ticket #9654 (Allow saving movie frames with transparent background) closed by
- fixed: Added movie record transparentBackground option. This feature is …
- 4:34 PM Ticket #9654 (Allow saving movie frames with transparent background) created by
- Begin forwarded message: From: Christian Schafmeister <> Subject: Re: …
- 4:22 PM Dev2023-8-28 edited by
- (diff)
- 2:44 PM Ticket #9653 (MouseModes: uses_wheel is unused) created by
- The MouseMode base class has a uses_wheel property that looks like …
- 2:28 PM Ticket #9652 (Volume rendering modes not honored) created by
- […]
- 11:32 AM Ticket #9650 (ArtiaX: problem loading Star file) closed by
- duplicate
- 11:30 AM Ticket #9648 (Web service failure) closed by
- not a bug: Hi Debbie, The way that Chimera and ChimeraX communicate with their …
- 11:22 AM Ticket #9646 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Luca, Thanks for reporting this problem. We believe it is caused …
- 11:15 AM Ticket #9643 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 11:14 AM Ticket #9642 (Crash handling text input) closed by
- can't reproduce
- 11:09 AM Ticket #9639 (Crash in modal dialog during screen change) closed by
- can't reproduce
- 11:05 AM Ticket #9637 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 10:13 AM Ticket #9651 (OpenXR: IndexError into frame buffers) created by
- […] 8a40.pdb
Aug 27, 2023:
- 8:21 PM Ticket #9650 (ArtiaX: problem loading Star file) created by
- […]
- 7:20 PM Ticket #9649 (ArtiaX: problem loading Star file) created by
- […]
- 4:51 AM Ticket #9648 (Web service failure) created by
- […]
Aug 26, 2023:
- 4:43 PM Ticket #9647 (ISOLDE: UNL template has no bonds) created by
- […]
- 11:47 AM Ticket #9646 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Aug 25, 2023:
- 10:30 PM Ticket #9645 (Toolshed compatibility reporting wrong) created by
- […]
- 10:28 PM Ticket #9644 (Toolshed search broken) created by
- […]
- 8:08 PM Ticket #9643 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 7:50 PM Ticket #9642 (Crash handling text input) created by
- […]
- 6:25 PM Ticket #9641 (VR glitches on Nvidia 4070 Ti graphics) created by
- Phil Cruz reports that the BCBB BioViz lab has several new computers …
- 6:08 PM Ticket #9640 (Use OpenXR instead of SteamVR for virtual reality rendering) created by
- The OpenXR API for virtual reality has gained wide-spread acceptance. …
- 12:15 PM Dev2023-8-28 edited by
- (diff)
- 12:15 PM Dev2023-8-28 edited by
- (diff)
- 12:14 PM Ticket #9634 (Blast from AlphaFold: self.job.model_name is None) closed by
- fixed: Should already be fixed in the daily builds.
- 6:56 AM Ticket #9639 (Crash in modal dialog during screen change) created by
- […]
Aug 24, 2023:
- 10:57 PM Ticket #9638 (glDrawBuffer: invalid operation while setting volume level) created by
- […]
- 8:14 PM Ticket #9637 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 6:53 PM Ticket #9636 (Cannot open *.glb.gz or *.dae.gz files) created by
- Phil reported in today's NIAID ChimeraX meeting that David Chen was …
- 4:41 PM NIAID2023 edited by
- (diff)
- 4:40 PM NIAID2023 edited by
- (diff)
- 4:39 PM NIAID2023 edited by
- (diff)
- 3:40 PM 2023-8-24 edited by
- (diff)
- 12:06 PM Ticket #9635 (Read HDF5 during session restore: file signature not found) created by
- […] TS14_cm.cxs
- 10:48 AM Ticket #9632 (Graphics crash, macOS 11.4, Radeon Pro 580) closed by
- nonchimerax: Apple Radeon graphics driver crash.
- 10:38 AM Ticket #9634 (Blast from AlphaFold: self.job.model_name is None) created by
- […]
- 10:38 AM Ticket #9633 (MemoryError opening mmCIF) closed by
- duplicate
- 10:36 AM Ticket #9631 (Crash in event loop, was running RestServer) closed by
- can't reproduce
- 7:23 AM Ticket #9633 (MemoryError opening mmCIF) created by
- […]
Aug 23, 2023:
- 11:55 PM Ticket #9632 (Graphics crash, macOS 11.4, Radeon Pro 580) created by
- […]
- 6:58 PM Ticket #9631 (Crash in event loop, was running RestServer) created by
- […]
- 6:04 PM Ticket #9630 (Add a command to set volume defaults) closed by
- fixed: Fixed. I added a new command "volume defaultvalues" that lets you set …
- 5:52 PM Ticket #9630 (Add a command to set volume defaults) created by
- […]
- 5:42 PM Ticket #9629 (Custom toolbar icons) created by
- I love the ability to customize the home tab of the toolbar, but there …
- 2:20 PM Ticket #9484 (Unable to save session because ModellerWebJob class not found) closed by
- fixed: Saving a session now works with a running Modeller job without …
- 2:17 PM ChangeLog edited by
- (diff)
- 1:28 PM Ticket #9628 (Mouse wheel translate does not move clip planes) closed by
- fixed: Fixed. Mouse wheel translate should do a z-translation which should …
- 1:24 PM Ticket #9628 (Mouse wheel translate does not move clip planes) created by
- […]
- 10:52 AM Ticket #9625 (Graphics crash, macOS 12.6.7, AMD Radeon R9 M390) closed by
- nonchimerax: Apple Radeon graphics driver crash.
- 10:14 AM Ticket #9619 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 9:57 AM Ticket #9618 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 9:31 AM Ticket #9627 (Alias menu) created by
- Implement an alias menu, like in Chimera
- 7:49 AM Ticket #9626 (Crash opening mmCIF file) created by
- […]
- 4:36 AM Ticket #9625 (Graphics crash, macOS 12.6.7, AMD Radeon R9 M390) created by
- […]
Aug 22, 2023:
- 8:03 PM Ticket #9624 (Crash opening mmCIF file) created by
- […]
- 5:31 PM Ticket #9623 (Trackpad pinch zoom rotates too much) closed by
- fixed: Fixed. I reduced the default ChimeraX Trackpad twist speed from 6 to …
- 5:19 PM Ticket #9623 (Trackpad pinch zoom rotates too much) created by
- From: Oliver Clarke via ChimeraX-users <chimerax-users@…> …
- 5:08 PM Ticket #9622 (Crash opening mmCIF file) created by
- […]
- 4:43 PM Ticket #9612 (Graphics crash, macOS 11.4, Radeon Pro 580) closed by
- nonchimerax: Apple Radeon graphics crash.
- 4:20 PM Ticket #9599 (read_full_array: Device not configured) closed by
- nonchimerax: The user tried to show a volume file at step 1 but the external disk …
- 3:58 PM Ticket #9594 (VR transmitting session: cycle detected) closed by
- fixed: Fixed. Session saving with a GLTF model open always failed with this …
- 12:47 PM Ticket #9595 (Graphics crash, macOS 12.5.1, Intel Iris Plus Graphics 655) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 12:32 PM Ticket #9621 (Crash opening mmCIF file) created by
- […]
- 12:14 PM Ticket #9620 (Crash writing mmCIF) created by
- […]
- 12:08 PM Ticket #9589 (Graphics crash, macOS 11.4, Radeon Pro 580) closed by
- nonchimerax: Mac Radeon graphics driver crash.
- 12:05 PM Ticket #9580 (HTTP Error 500 fetching palette info) closed by
- fixed: Fixed. A coloring command with palette named red-orange-blue tried to …
- 11:53 AM Ticket #9564 (GUI blank after upgrade 1.1 → 1.6) closed by
- nonchimerax: This is a bug in your Intel graphics driver. The Qt window toolkit …
- 11:42 AM DeveloperMeetings edited by
- (diff)
- 11:41 AM Dev2023-8-28 created by
- 11:40 AM 2023-8-24 created by
- 11:39 AM DeveloperMeetings edited by
- (diff)
- 11:39 AM Dev2023-8-21 created by
- 11:36 AM Dev2023-8-14 edited by
- (diff)
- 11:35 AM DeveloperMeetings edited by
- (diff)
- 10:58 AM Ticket #9619 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 10:54 AM Ticket #9586 (KeyError matching selected regions) closed by
- fixed: Fix will be in tomorrow's daily build
- 10:44 AM Ticket #9618 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 10:40 AM Ticket #9614 (MatchMaker: KeyError with domain matching) closed by
- duplicate: duplicate of #9586
- 9:17 AM Ticket #9616 (Crash in QFormLayout.removeRow()) closed by
- can't reproduce: The only call to QFormLayout.removeRow() is in the Modeller tool, but …
- 9:02 AM Ticket #9617 ("pip install" failure) created by
- […]
- 8:50 AM Ticket #9616 (Crash in QFormLayout.removeRow()) created by
- […]
- 8:39 AM Ticket #9613 (Crash handling text input) closed by
- can't reproduce
- 8:36 AM Ticket #9611 (Crash in garbage collection) closed by
- can't reproduce
- 7:34 AM Ticket #9615 (ISOLDE: sim_manager is None) created by
- […]
- 5:40 AM Ticket #9614 (MatchMaker: KeyError with domain matching) created by
- […]
- 5:09 AM Ticket #9613 (Crash handling text input) created by
- […]
Aug 21, 2023:
- 11:08 PM Ticket #9612 (Graphics crash, macOS 11.4, Radeon Pro 580) created by
- […]
- 8:18 PM Ticket #9611 (Crash in garbage collection) created by
- […]
- 2:46 PM Ticket #9610 (Phi-setting error interferes with Selection Inspector) created by
- […]
- 2:30 PM Ticket #9532 (Zero-height help window) closed by
- fixed: Seems that the problem is that when the Help Viewer is initially …
- 1:20 PM Ticket #9609 (ISOLDE: problem loading residue templates) created by
- […]
- 12:47 PM Ticket #9608 (Registration mailing-list subscription: HTTP 404 failure) created by
- […]
- 11:55 AM Ticket #9607 (remotecontrol: Broken pipe) closed by
- not a bug: Presumably the client crashed while getting output
- 11:49 AM Ticket #9606 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 11:38 AM Ticket #9603 (Session restore: invalid load key) closed by
- duplicate
- 11:28 AM Ticket #9602 (Long atom spec crashes ChimeraX) closed by
- duplicate: dup of #4842
- 11:24 AM Ticket #9601 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by
- duplicate
- 11:07 AM Ticket #9600 (Color by attribute failure) closed by
- duplicate: Hi Suhani, Thanks for reporting this problem. It has been fixed in …
- 9:49 AM Ticket #9607 (remotecontrol: Broken pipe) created by
- […]
- 9:23 AM Ticket #9606 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 4:10 AM Ticket #9605 (Join models with peptide bond: insert-before residue not found in _residues) created by
- […]
- 2:25 AM Ticket #9604 (Mol2 type not updated) created by
- […] fluorobenzene.mol2
- 1:18 AM Ticket #9603 (Session restore: invalid load key) created by
- […]
Aug 20, 2023:
- 4:16 PM Ticket #9602 (Long atom spec crashes ChimeraX) created by
- […]
- 12:03 AM Ticket #9601 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
Aug 19, 2023:
Aug 18, 2023:
Aug 17, 2023:
- 6:06 PM Ticket #9585 (chain identity attribute non-functional) closed by
- fixed: Apparently broken on 8/25/21. Fix: …
- 1:08 PM Ticket #9598 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 12:04 PM Ticket #9598 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 9:51 AM Ticket #9596 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Duc, Thanks for reporting this problem. In our experience it …
- 8:00 AM NIAID2023 edited by
- (diff)
- 4:11 AM Ticket #9597 (Antechamber doesn't like blank residue name) created by
- […] PGN_R.pdb
- 1:46 AM Ticket #9596 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Aug 16, 2023:
- 4:51 PM ChangeLog edited by
- (diff)
- 3:51 PM ChangeLog edited by
- (diff)
- 3:51 PM ChangeLog edited by
- (diff)
- 2:56 PM Ticket #9595 (Graphics crash, macOS 12.5.1, Intel Iris Plus Graphics 655) created by
- […]
- 11:21 AM Ticket #9594 (VR transmitting session: cycle detected) created by
- […]
- 9:35 AM Ticket #9593 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 9:27 AM Ticket #9592 (Crash using open/save dialog) closed by
- can't reproduce
- 9:25 AM Ticket #9591 (Crash in event loop during remote control) closed by
- can't reproduce
- 9:23 AM Ticket #9590 (Crash in event loop during remote control) closed by
- can't reproduce: Not a lot to go on
- 9:18 AM Ticket #9588 (Crash in event loop) closed by
- can't reproduce
- 5:34 AM Ticket #9593 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Aug 15, 2023:
- 11:37 PM Ticket #9592 (Crash using open/save dialog) created by
- […]
- 11:30 PM Ticket #9591 (Crash in event loop during remote control) created by
- […]
- 11:29 PM Ticket #9590 (Crash in event loop during remote control) created by
- […]
- 10:21 PM Ticket #9429 (BlastProtein failed: 'bytes' object has no attribute 'items') closed by
- fixed
- 10:16 PM Ticket #9589 (Graphics crash, macOS 11.4, Radeon Pro 580) created by
- […]
- 5:59 PM Ticket #9588 (Crash in event loop) created by
- […]
- 2:05 PM Ticket #9587 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate: Hi Kamalendu, Thanks for reporting this problem. It has been fixed, …
- 1:47 PM Ticket #9587 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 12:59 PM Ticket #9584 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 11:52 AM Ticket #9586 (KeyError matching selected regions) created by
- […]
- 11:46 AM Ticket #9585 (chain identity attribute non-functional) created by
- This chain identity (pseudo?)attribute that we added and that I am …
- 10:50 AM Ticket #9584 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 8:07 AM Ticket #9583 (SEQCROW: 'ArtistList' object has no attribute 'remove') created by
- […]
Aug 14, 2023:
- 5:09 PM Ticket #9582 (Cannot find Python) created by
- […]
- 4:00 PM Ticket #9581 (Rotamer library needs access to ui_name) created by
- […]
- 3:48 PM Ticket #9577 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 3:47 PM Ticket #9576 (QPainter::begin: Paint device returned engine == 0) closed by
- duplicate
- 3:46 PM Ticket #9575 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate
- 3:42 PM Ticket #9574 (Restoring new session in old ChimeraX) closed by
- limitation: Hi Anushka, ChimeraX session files are typically not backwards …
- 3:00 PM Ticket #9573 (Opal web service failure) closed by
- not a bug: Hi Stefan, We have gone to a different web service infrastructure …
- 2:31 PM Ticket #9580 (HTTP Error 500 fetching palette info) created by
- […]
- 2:23 PM Ticket #9572 (Crash opening mmCIF) closed by
- can't reproduce: Need test file.
- 1:52 PM Ticket #9571 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Tarhan, Thanks for reporting this problem. In our experience it …
- 1:47 PM Ticket #9570 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 1:39 PM Ticket #9569 (MemoryError opening mmCIF) closed by
- duplicate
- 1:33 PM Ticket #9579 (Mol2 'skip' atoms not accounted for in summaries) created by
- The number of atoms/bonds/residues output in the MOLECULE section does …
- 12:31 PM Ticket #9578 (ISOLDE: wrapped C/C++ object of type QToolButton has been deleted) created by
- […]
- 11:57 AM Ticket #9568 (Restore new session in old ChimeraX) closed by
- duplicate
- 11:57 AM Ticket #8989 (TCIA 1.3.6.1.4.1.9328.50.17.177679383028944381508162168149189677080 ...) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/6c4caa2a6758e70ab0bccd2e7f67a1 …
- 11:50 AM Ticket #9567 (Restore new session in old ChimeraX) closed by
- duplicate
- 11:48 AM Ticket #9566 (Antechamber failure) closed by
- limitation: Hi Boaz, The calculation always works on my Mac (though it does have …
- 11:17 AM Ticket #9419 (SEG models opened from files should appear in Segmentation menu) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/864fbd826898a4ca0f39b1ec081565 …
- 11:07 AM Ticket #9563 ('SaveOptionsWidget' object has no attribute 'compute_sheets') closed by
- duplicate
- 10:50 AM Ticket #9562 (numpy.bool defunct) closed by
- duplicate: Hi, Thanks for reporting this problem. It was actually fixed in the …
- 8:57 AM Ticket #9577 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 8:53 AM Ticket #9576 (QPainter::begin: Paint device returned engine == 0) created by
- […]
- 6:54 AM Ticket #9575 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 5:05 AM Ticket #9574 (Restoring new session in old ChimeraX) created by
- […]
- 4:51 AM Ticket #9573 (Opal web service failure) created by
- […]
- 4:11 AM Ticket #9572 (Crash opening mmCIF) created by
- […]
- 12:42 AM Ticket #9571 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Aug 13, 2023:
- 2:45 PM Ticket #9570 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 1:41 PM Ticket #9569 (MemoryError opening mmCIF) created by
- […]
- 9:21 AM Ticket #9568 (Restore new session in old ChimeraX) created by
- […]
- 4:08 AM Ticket #9567 (Restore new session in old ChimeraX) created by
- […]
Aug 12, 2023:
- 9:53 AM Ticket #9566 (Antechamber failure) created by
- […] 1qs0_couloumbic.log
- 5:12 AM Ticket #9565 (Session restore: invalid start byte) created by
- […]
Aug 11, 2023:
- 4:09 PM Ticket #9274 (Seg brush modes) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/dbec000c9d517d69b081d667207650 …
- 1:33 PM Ticket #9564 (GUI blank after upgrade 1.1 → 1.6) created by
- […] chimera GUI bug.PNG
- 12:48 PM Ticket #9550 (Side view expose event: glDrawBuffer: invalid operation) closed by
- can't reproduce: Actually I don't think it lost the OpenGL context entirely, because …
- 12:32 PM Ticket #9563 ('SaveOptionsWidget' object has no attribute 'compute_sheets') created by
- […]
Aug 10, 2023:
- 11:13 PM Ticket #9562 (numpy.bool defunct) created by
- […]
- 5:47 PM Ticket #9556 (KeyError writing Mol2 file) closed by
- fixed: Hi Eliza, Thanks for reporting yet another error with the Mol2 …
- 4:07 PM Ticket #9561 (Crash showing Rapid Access at startup) closed by
- nonchimerax
- 4:03 PM Ticket #9560 (Possibly of interest: new Chemical Components Dictionary tool from PDBe) closed by
- not a bug: I forwarded these by hand to chimerax-programmers@…
- 2:54 PM Ticket #9561 (Crash showing Rapid Access at startup) created by
- […]
- 2:50 PM Ticket #9558 (Crash in event loop) closed by
- can't reproduce
- 2:45 PM Ticket #9555 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- can't reproduce: Symptoms described match what we expect. User was running AlphaFold …
- 2:34 PM Ticket #9554 (Crash in event loop) closed by
- can't reproduce
- 2:33 PM Ticket #9553 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 2:32 PM Ticket #9552 (Crash in event loop) closed by
- can't reproduce
- 2:31 PM Ticket #9551 (Crash in event loop) closed by
- can't reproduce
- 2:05 PM 2023-8-10 edited by
- (diff)
- 1:18 PM Ticket #9549 (Crash in garbage collection) closed by
- can't reproduce: Hi Peter, Thanks for reporting this problem. Unfortunately, there is …
- 12:50 PM 2023-8-10 edited by
- (diff)
- 10:48 AM Ticket #9560 (Possibly of interest: new Chemical Components Dictionary tool from PDBe) created by
- […]
- 10:43 AM Ticket #9559 (DICOM Segmentations 2D views should show overlay of active ...) created by
- The slice views of the image with segmentations currently show …
- 8:51 AM Ticket #9558 (Crash in event loop) created by
- […]
- 8:49 AM Ticket #9557 (Registration server unavailable) created by
- […]
- 8:32 AM Ticket #9556 (KeyError writing Mol2 file) created by
- […]
- 8:23 AM Ticket #9555 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 7:45 AM Ticket #9554 (Crash in event loop) created by
- […]
- 7:11 AM Ticket #9553 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
- 4:20 AM Ticket #9552 (Crash in event loop) created by
- […]
- 2:52 AM Ticket #9551 (Crash in event loop) created by
- […]
- 12:22 AM Ticket #9550 (Side view expose event: glDrawBuffer: invalid operation) created by
- […]
Aug 9, 2023:
- 7:18 PM Ticket #9549 (Crash in garbage collection) created by
- […]
- 3:00 PM Ticket #9470 (traceback restoring session saved after using Segmentations tool) closed by
- fixed: DICOM segmentations were being saved with the wrong numpy value type, …
- 2:36 PM Ticket #9547 (Drawing map: cannot select an axis to squeeze out which has size not ...) closed by
- can't reproduce: It appears the hdf reader returned an array for a single plane that …
- 2:05 PM Ticket #9548 (Change color-by-chain toolbar icon so blue color (chain A) is on left, ...) closed by
- fixed: Ok. I'm surprised you paid attention to the order. I agree it is …
- 2:02 PM Ticket #9548 (Change color-by-chain toolbar icon so blue color (chain A) is on left, ...) created by
- Copied from ticket #9534. Hi, Thank you very much for quick fix! I …
- 1:50 PM Ticket #9539 (DICOM not readable on Windows) closed by
- fixed: Added code to ignore files starting with '._'
- 12:14 PM Ticket #9526 (DICOM Segmentations: include SEG models opened from DICOM in the list ...) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/864fbd826898a4ca0f39b1ec081565 …
- 11:08 AM Ticket #9546 (Error with saving mol2 file) closed by
- fixed: Hi Elizabeth, Thanks for reporting this problem. It was a simple …
- 10:52 AM Ticket #9545 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.2.5
- 10:44 AM Ticket #9543 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 8:44 AM Ticket #9547 (Drawing map: cannot select an axis to squeeze out which has size not ...) created by
- […]
- 7:27 AM Ticket #9546 (Error with saving mol2 file) created by
- […]
- 6:22 AM Ticket #9545 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Aug 8, 2023:
- 9:38 PM Ticket #9544 (Phenix mmCIF secondary structure problems) created by
- […] When opening CIF files generated by Phenix refine, the …
- 5:54 PM Ticket #9543 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 5:25 PM Ticket #9542 (meeting start: encode_vr_room_position: Cannot cast ufunc output) closed by
- fixed: Fixed. The numpy.clip() function now gives an error when trying to …
- 2:56 PM Ticket #9542 (meeting start: encode_vr_room_position: Cannot cast ufunc output) created by
- […]
- 2:44 PM Ticket #9534 (mouse wheel-based zoom is not working) closed by
- fixed: Fixed in tonight's daily build (dated August 8, 2023). The Mac …
- 12:55 PM Dev2023-8-14 edited by
- (diff)
- 12:55 PM 2023-8-10 created by
- 12:54 PM Dev2023-8-14 created by
- 12:53 PM DeveloperMeetings edited by
- (diff)
- 11:00 AM Ticket #9541 (MemoryError open mmCIF) closed by
- duplicate
- 10:55 AM Ticket #9540 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Tarhan, Thanks for reporting this problem. We believe it happens …
- 10:48 AM Ticket #9524 (DICOM Segmentations: going to different slice doesn't remove overlay) closed by
- worksforme: Seems to work on today's daily build (2023-08-08)
- 10:29 AM Ticket #9537 (Crash adding trigger handler) closed by
- can't reproduce
- 10:28 AM Ticket #9541 (MemoryError open mmCIF) created by
- […]
- 10:27 AM Ticket #9536 (MemoryError open mmCIF) closed by
- duplicate
- 10:25 AM Ticket #9535 (Crash using Mac color panel) closed by
- can't reproduce
- 10:17 AM Ticket #9540 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 9:42 AM Ticket #9539 (DICOM not readable on Windows) created by
- […]
- 9:42 AM Ticket #9538 ('ChimeraX-ISOLDE' custom initialization failed: Clipper distribution ...) created by
- […]
- 2:05 AM Ticket #9537 (Crash adding trigger handler) created by
- […]
Aug 7, 2023:
- 8:33 PM Ticket #9533 ("view" includes hidden elements) closed by
- fixed: Fixed. The view command was using all atoms and bonds of a residue if …
- 6:57 PM Ticket #9536 (MemoryError open mmCIF) created by
- […]
- 3:42 PM Dev2023-8-7 edited by
- (diff)
- 2:02 PM Ticket #9535 (Crash using Mac color panel) created by
- […]
- 1:22 PM Ticket #9397 (Segmentations (SEG) models should not appear in choices of ...) closed by
- fixed
- 1:18 PM Ticket #9534 (mouse wheel-based zoom is not working) created by
- […]
- 1:18 PM Dev2023-8-7 edited by
- (diff)
- 1:05 PM Ticket #9515 (Tried to add model with the same id as another model) closed by
- can't reproduce: Does not look like the user was reporting the error where restoring a …
- 12:54 PM Ticket #9530 (Crash in garbage collection while drawing volume histogram after ...) closed by
- can't reproduce: Probably a reference count bug. Log had several hundred commands …
- 12:03 PM Ticket #9529 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 11:55 AM Ticket #9527 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 11:30 AM Ticket #9519 (Load Toolshed cache: 'list' object has no attribute 'split') closed by
- can't reproduce: 0.8!
- 10:46 AM Ticket #9517 (Crash using Save dialog) closed by
- can't reproduce
- 10:45 AM Ticket #9533 ("view" includes hidden elements) created by
- […]
- 10:37 AM Ticket #9516 (Truncated HIS residue) closed by
- duplicate
- 10:24 AM Ticket #9532 (Zero-height help window) created by
- […]
Aug 6, 2023:
Aug 5, 2023:
- 10:23 AM Ticket #9530 (Crash in garbage collection while drawing volume histogram after ...) created by
- […]
- 4:29 AM Ticket #9529 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
Aug 4, 2023:
- 9:37 PM Ticket #9528 (Crash in event loop) created by
- […]
- 6:27 PM Ticket #9527 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 5:18 PM Ticket #9526 (DICOM Segmentations: include SEG models opened from DICOM in the list ...) created by
- was mentioned in #9397 but is really a separate thing. Would be nice …
- 5:08 PM Ticket #9525 (DICOM Segmentations: hard to resize cursor using touchpad Shift-scroll) created by
- I don't understand how this Shift-scroll is supposed to work on a …
- 4:58 PM Ticket #9524 (DICOM Segmentations: going to different slice doesn't remove overlay) created by
- I do see the nice overlay showing the segmented part of a slice. But …
- 2:01 PM Ticket #9523 (ISOLDE ResidueStepper holding reference to dead structure) created by
- […]
- 1:21 PM Ticket #9522 (Interfaces/NetworkX: libbz2.so.1.0: cannot open shared object file: No ...) created by
- […]
- 1:08 PM Ticket #9521 ("make install" for a bundle on Windows very slow) created by
- If I do "make install" in the vive bundle directory on Windows …
- 9:19 AM Ticket #9520 (MemoryError opening mmCIF) created by
- […]
- 5:33 AM Ticket #9519 (Load Toolshed cache: 'list' object has no attribute 'split') created by
- […]
- 2:57 AM Ticket #9518 (Crash using Save dialog) created by
- […]
- 2:52 AM Ticket #9517 (Crash using Save dialog) created by
- […]
- 1:27 AM Ticket #9516 (Truncated HIS residue) created by
- […]
Aug 3, 2023:
- 7:32 PM Ticket #9515 (Tried to add model with the same id as another model) created by
- […]
- 4:03 PM Ticket #9511 (Crash saving session including maps) closed by
- limitation: Looks like you were saving a session when ChimeraX crashed. Sorry …
- 3:37 PM Ticket #9514 (Save command history: No space left on device) closed by
- nonchimerax
- 2:34 PM Ticket #9514 (Save command history: No space left on device) created by
- […]
- 1:05 PM 2023-8-3 edited by
- (diff)
- 12:17 PM 2023-8-3 edited by
- (diff)
- 10:55 AM Ticket #9396 (Automatically set volume step to 1 on newly opened segmentations) closed by
- fixed: OK, should be fixed in tomorrow's build. Now whenever we create a new …
- 10:27 AM Ticket #9506 (Graphics crash, macOS 13.3.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 9:01 AM Ticket #9509 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate: Hi Toni, Thanks for reporting this problem. It was fixed about 3 …
- 8:56 AM Ticket #9507 (Unknown crash) closed by
- can't reproduce
- 8:40 AM Ticket #9513 (Nucleotide restore state is None) created by
- […] The error occurs upon attempting to load a session file …
- 8:33 AM Ticket #9512 (Unable to open .cxs files saved in v1.6.1.) created by
- […]
- 7:06 AM Ticket #9511 (Crash saving session including maps) created by
- […]
- 5:37 AM Ticket #9510 (UnicodeDecodeError reading PDB file) created by
- […]
- 2:39 AM Ticket #9509 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
Aug 2, 2023:
- 4:48 PM Ticket #9508 (TypeError setting framerate) created by
- Just another one of these Python 3.11-no-longer-does-type-coercion …
- 3:48 PM Ticket #9507 (Unknown crash) created by
- […]
- 3:39 PM Ticket #9506 (Graphics crash, macOS 13.3.1, Intel Iris Plus Graphics) created by
- […]
- 1:06 PM Ticket #9501 (vr true: CompositorError_TextureUsesUnsupportedFormat) closed by
- can't reproduce
- 12:29 PM NIAID2023 edited by
- (diff)
- 10:43 AM Ticket #9503 (Silhouettes bug macOSX) closed by
- nonchimerax: Unfortunately there is one old Intel Mac laptop model that has this …
- 10:22 AM Ticket #9471 (pip install: bad Windows path) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/c0d7d993fa3d87069031a3bdad2eec …
- 10:22 AM Ticket #9505 (pip install failure) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/c0d7d993fa3d87069031a3bdad2eec …
- 9:53 AM Ticket #9504 (Histogram widget: operands could not be broadcast together with shapes) closed by
- duplicate
- 9:37 AM Ticket #9505 (pip install failure) created by
- […]
- 9:36 AM Ticket #9504 (Histogram widget: operands could not be broadcast together with shapes) created by
- […]
- 9:21 AM Ticket #9503 (Silhouettes bug macOSX) created by
- […] [[Image(...)]]
- 9:20 AM Ticket #9435 (StarMap: 'NoneType' object has no attribute 'strip') closed by
- fixed: Fixed in starmap 1.2.17
- 9:20 AM Ticket #9452 (StarMap: Permission denied: 'run_starmap_medic.sh') closed by
- fixed: Fixed in starmap 1.2.17
- 9:19 AM Ticket #9380 (StarMap: 'NoneType' object has no attribute 'strip') closed by
- fixed: Fixed in starmap 1.2.17
- 9:16 AM Ticket #9502 (Crash in event loop) closed by
- can't reproduce: Possibly during erasing/copying a volume.
- 9:09 AM Ticket #9502 (Crash in event loop) created by
- […]
- 8:49 AM Ticket #9501 (vr true: CompositorError_TextureUsesUnsupportedFormat) created by
- […]
- 3:30 AM Ticket #9500 (XMAS: change_pseudobonds_style: could not convert string to float: '0,') created by
- […]
- 3:05 AM Ticket #9499 (Registration failed to subscribe to announcements: HTTP Error 404: Not ...) created by
- […]
Aug 1, 2023:
- 11:03 AM Dev2023-8-7 created by
- 11:02 AM 2023-8-3 created by
- 11:01 AM DeveloperMeetings edited by
- (diff)
- 10:56 AM Ticket #8388 (gaps between pseudobonds and ribbons in printable representations) closed by
- fixed: The CA-to-CA missing-structure pseudobonds seem to have been acceptable
- 9:29 AM Ticket #9498 (Restore new session in old ChimeraX) closed by
- limitation
- 7:02 AM Ticket #9498 (Restore new session in old ChimeraX) created by
- […]
- 1:49 AM Ticket #9478 (ISOLDE: unparameterized validation: 'NoneType' object has no attribute ...) closed by
- duplicate: Duplicate of #9107.
Jul 31, 2023:
- 5:19 PM Dev2023-7-31 edited by
- (diff)
- 5:15 PM Dev2023-7-31 edited by
- (diff)
- 4:45 PM Dev2023-7-31 edited by
- (diff)
- 4:27 PM Dev2023-7-31 edited by
- (diff)
- 4:17 PM Dev2023-7-31 edited by
- (diff)
- 4:09 PM Dev2023-7-31 edited by
- (diff)
- 3:59 PM Ticket #9497 (Crash querying cursor position) closed by
- can't reproduce: We've seen the crash in this line of code calling one of two Qt …
- 3:58 PM Ticket #9495 (Crash in event loop) closed by
- limitation: Hi Jackson, Thanks for the info and I'm glad you're otherwise …
- 3:43 PM Ticket #9490 (Phil Cruz has invited you to collaborate on Box) closed by
- fixed: Thanks. I did not need the zip file to fix the collada session …
- 3:41 PM Ticket #9489 (Collada not saved in session) closed by
- fixed: Fixed. The Collada surfaces were not being saved in session files. …
- 3:23 PM Ticket #9488 (Qt user interface panels blank) closed by
- nonchimerax
- 3:20 PM Ticket #9486 (Graphics crash, macOS 13.5, Intel UHD Graphics 617) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 2:14 PM Ticket #9494 (Attempt to use Opal web services) closed by
- not a bug
- 2:12 PM Ticket #9493 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate: Hi Tanner, Thanks for reporting this problem. As far as we know, it …
- 2:05 PM Ticket #9491 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) closed by
- duplicate
- 1:47 PM Ticket #9487 (Crash in event loop) closed by
- can't reproduce
- 1:43 PM Ticket #9497 (Crash querying cursor position) created by
- W{{{ The following bug report has been submitted: Platform: …
- 1:34 PM Ticket #9496 (Help viewer password reject: No module named 'sip') created by
- […]
- 1:29 PM Ticket #9495 (Crash in event loop) created by
- […]
- 12:39 PM Ticket #7234 (Apple notarization altool command will be discontinued Fall 2023) closed by
- fixed: Done. ChimeraX notarization uses notarytool and the build and …
- 12:34 PM Ticket #9480 (Probable crash in garbage collection) closed by
- can't reproduce
- 12:23 PM Ticket #9494 (Attempt to use Opal web services) created by
- […]
- 12:06 PM Ticket #9493 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 11:47 AM Ticket #9482 (Graphics crash, macOS 13.4.1, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:45 AM Ticket #9481 (AlphaFold: no space left on device) closed by
- nonchimerax: A ChimeraX AlphaFold prediction runs on Google Colab, and the sequence …
- 11:34 AM Ticket #9492 (Would like a MSI installer) created by
- Many system administrators prefer MSI installers. See …
- 11:12 AM Ticket #9479 (Problems with coarse-grained structures) closed by
- not a bug: Hi Siyoung, Also, since this is not an atom-level structure, ChimeraX …
- 10:08 AM Ticket #9491 (Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device ...) created by
- […]
- 8:22 AM Ticket #9490 (Phil Cruz has invited you to collaborate on Box) created by
- […]
- 8:06 AM Ticket #9489 (Collada not saved in session) created by
- […]
- 6:41 AM Ticket #9488 (Qt user interface panels blank) created by
- […] screenshot.jpg
- 6:21 AM Ticket #9487 (Crash in event loop) created by
- […]
Jul 30, 2023:
- 7:36 PM Ticket #9486 (Graphics crash, macOS 13.5, Intel UHD Graphics 617) created by
- […]
- 7:15 PM Ticket #9485 (Crash in event loop while toolshed check running) created by
- […]
- 1:36 PM Ticket #9484 (Unable to save session because ModellerWebJob class not found) created by
- […]
- 1:31 PM Ticket #9483 (No error message when timeout exceeded) created by
- […]
- 7:46 AM Ticket #9482 (Graphics crash, macOS 13.4.1, Intel Iris Plus Graphics) created by
- […]
Jul 29, 2023:
- 11:44 PM Ticket #9481 (AlphaFold: no space left on device) created by
- […] log.txt
- 9:29 PM Ticket #9480 (Probable crash in garbage collection) created by
- […]
- 9:31 AM Ticket #9479 (Problems with coarse-grained structures) created by
- […] cg_cut.pdb
Note:
See TracTimeline
for information about the timeline view.
