Opened 2 years ago

Closed 2 years ago

#9638 closed defect (can't reproduce)

glDrawBuffer: invalid operation while setting volume level

Reported by: chimerax-bug-report@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Graphics Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Linux-4.18.0-425.19.2.el8_7.x86_64-x86_64-with-glibc2.28
ChimeraX Version: 1.7.dev202306010115 (2023-06-01 01:15:42 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.7.dev202306010115 (2023-06-01)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /home/laiqi@nidvd.org/Downloads/chimera-1.17.3-linux_x86_64.bin

Unrecognized file suffix '.bin'  

> open /home/laiqi@nidvd.org/Downloads/cryosparc_P35_J1477_011_volume_map.mrc

Opened cryosparc_P35_J1477_011_volume_map.mrc as #1, grid size 288,288,288,
pixel 0.65, shown at level 0.177, step 2, values float32  

> volume #1 level 0.1442

> volume #1 level 0.1554

> volume #1 level 0.1408

> open https://www.rbvi.ucsf.edu/chimerax/tutorials.html

Opened https://www.rbvi.ucsf.edu/chimerax/tutorials.html  

> open 7DV8

Summary of feedback from opening 7DV8 fetched from pdb  
---  
note | Fetching compressed mmCIF 7dv8 from
http://files.rcsb.org/download/7dv8.cif  
  
7dv8 title:  
The crystal structure of rice immune receptor RGA5-HMA2. [more info...]  
  
Chain information for 7dv8 #2  
---  
Chain | Description | UniProt  
A B C D E F G H I J K L M N | Disease resistance protein RGA5 | RGA5R_ORYSJ
997-1069  
  
7dv8 mmCIF Assemblies  
---  
1| author_defined_assembly  
2| software_defined_assembly  
  

> close 7DV8

Expected a models specifier or a keyword  

> close #2

> close 7VD8

Expected a models specifier or a keyword  

> open 7VD8

Summary of feedback from opening 7VD8 fetched from pdb  
---  
notes | Fetching compressed mmCIF 7vd8 from
http://files.rcsb.org/download/7vd8.cif  
Fetching CCD NA from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/A/NA/NA.cif  
  
7vd8 title:  
1.96 A structure of human apoferritin obtained from Talos Arctica microscope
[more info...]  
  
Chain information for 7vd8 #2  
---  
Chain | Description | UniProt  
A B C D E F G H I J K L M N O P Q R S T U V W X | Ferritin heavy chain |
FRIH_HUMAN 5-176  
  
Non-standard residues in 7vd8 #2  
---  
NA — sodium ion  
ZN — zinc ion  
  

> select add #2

36713 atoms, 34608 bonds, 560 pseudobonds, 6929 residues, 2 models selected  

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models #2,1,0,0,-19.34,0,1,0,13.02,0,0,1,130.88

> view matrix models #2,1,0,0,-53.768,0,1,0,0.2352,0,0,1,107.56

> hide sel atoms

> show sel surfaces

> hide sel surfaces

> show sel cartoons

> select subtract #2

24 models selected  

> select add #1

2 models selected  

> lighting simple

[Repeated 1 time(s)]

> ui tool show "Side View"

> select add #1

3 models selected  

> select subtract #1

Nothing selected  

> select add #2

36713 atoms, 34608 bonds, 560 pseudobonds, 6929 residues, 2 models selected  

> select clear

> select /A:143

9 atoms, 8 bonds, 1 residue, 1 model selected  

> select up

185 atoms, 186 bonds, 23 residues, 2 models selected  

> select up

1413 atoms, 1442 bonds, 172 residues, 2 models selected  

> hide #!2 models

> view sel

> show #!2 models

> hide #!2 models

> show sel

> show #!2 models

> hide sel surfaces

> hide sel atoms

> select /G:5-176

1413 atoms, 1442 bonds, 172 residues, 1 model selected  

> select /F:5-176

1413 atoms, 1442 bonds, 172 residues, 1 model selected  

> select /A:5-176

1413 atoms, 1442 bonds, 172 residues, 1 model selected  

> hide /A

> open https://www.rbvi.ucsf.edu/chimerax/tutorials.html

Opened https://www.rbvi.ucsf.edu/chimerax/tutorials.html  

> hide sel surfaces

> hide sel atoms

> hide sel cartoons

> show sel cartoons

> hide atoms

[Repeated 1 time(s)]

> open https://www.rbvi.ucsf.edu/chimerax/tutorials.html

Opened https://www.rbvi.ucsf.edu/chimerax/tutorials.html  

> open https://www.rbvi.ucsf.edu/chimerax/tutorials.html

Opened https://www.rbvi.ucsf.edu/chimerax/tutorials.html  

> open https://www.rbvi.ucsf.edu/chimerax/tutorials.html

Opened https://www.rbvi.ucsf.edu/chimerax/tutorials.html  

> select /A

1532 atoms, 1442 bonds, 19 pseudobonds, 291 residues, 2 models selected  

> open https://www.rbvi.ucsf.edu/chimerax/tutorials.html

Opened https://www.rbvi.ucsf.edu/chimerax/tutorials.html  

> hide ~sel ribbons

> view matrix models #2,1,0,0,3.9487,0,1,0,26.655,0,0,1,179.68

> view matrix models #2,1,0,0,-78.031,0,1,0,-5.0774,0,0,1,59.749

> view matrix models #2,1,0,0,-10.847,0,1,0,-33.54,0,0,1,322.49

> ui mousemode right rotate

> ui mousemode right "translate selected models"

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.96901,0.052904,-0.24131,20.711,-0.10159,0.97572,-0.19404,12.952,0.22518,0.21254,0.95085,265.17

> select clear

> ui mousemode right "translate selected models"

> select #1

4 models selected  

> view matrix models #1,1,0,0,66.575,0,1,0,-11.115,0,0,1,155.35

> volume #1 level 0.1637

> select /A:111

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select up

230 atoms, 231 bonds, 30 residues, 2 models selected  

> select up

1413 atoms, 1442 bonds, 172 residues, 2 models selected  

> select up

1532 atoms, 1442 bonds, 291 residues, 2 models selected  

> view matrix models
> #2,0.96901,0.052904,-0.24131,-70.488,-0.10159,0.97572,-0.19404,52.093,0.22518,0.21254,0.95085,-7.2582

> volume #1 level 0.192

> ui mousemode right "clip rotate"

> select #1

4 models selected  

> ui mousemode right clip

> ui mousemode right "clip rotate"

> ui mousemode right clip

> ui mousemode right "clip rotate"

> ui mousemode right clip

> select /A:31

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select up

254 atoms, 260 bonds, 30 residues, 2 models selected  

> select up

1413 atoms, 1442 bonds, 172 residues, 2 models selected  

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.96901,0.052904,-0.24131,98.37,-0.10159,0.97572,-0.19404,-71.292,0.22518,0.21254,0.95085,60.044

> view matrix models
> #2,0.96901,0.052904,-0.24131,11.523,-0.10159,0.97572,-0.19404,-35.211,0.22518,0.21254,0.95085,9.7692

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.12182,-0.96134,0.24695,210.82,0.49067,-0.15795,-0.85691,70.767,0.86279,0.22556,0.45246,-40.342

> view matrix models
> #2,-0.074118,-0.83403,0.54671,192.43,0.21888,-0.54846,-0.80702,155.95,0.97293,0.059851,0.22321,-11.626

> volume #1 level 0.1369

> volume #1 style mesh

> volume #1 style surface

> volume #1 level 0.1558

> volume #1 level 0.118

> ui tool show "Fit in Map"

> fitmap #2 inMap #1

Fit molecule 7vd8 (#2) to map cryosparc_P35_J1477_011_volume_map.mrc (#1)
using 36713 atoms  
average map value = 0.007617, steps = 1100  
shifted from previous position = 27.5  
rotated from previous position = 3.8 degrees  
atoms outside contour = 36178, contour level = 0.11798  
  
Position of 7vd8 (#2) relative to cryosparc_P35_J1477_011_volume_map.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.07865228 -0.83073703 0.55108056 131.29848956  
0.15380427 -0.55628639 -0.81663314 198.27397955  
0.98496601 0.02052849 0.17152410 -137.47233769  
Axis 0.61409794 -0.31827565 0.72220795  
Axis point 77.15645919 118.30662411 0.00000000  
Rotation angle (degrees) 137.02971357  
Shift along axis -81.75926419  
  

> view matrix models
> #2,-0.078652,-0.83074,0.55108,198.93,0.1538,-0.55629,-0.81663,185.16,0.98497,0.020528,0.17152,22.296

> view matrix models
> #2,-0.6285,-0.70288,0.33307,312.26,0.71704,-0.68952,-0.10206,4.5312,0.3014,0.17468,0.93736,26.979

> fitmap #2 inMap #1

Fit molecule 7vd8 (#2) to map cryosparc_P35_J1477_011_volume_map.mrc (#1)
using 36713 atoms  
average map value = 0.008825, steps = 196  
shifted from previous position = 3.49  
rotated from previous position = 3.29 degrees  
atoms outside contour = 36077, contour level = 0.11798  
  
Position of 7vd8 (#2) relative to cryosparc_P35_J1477_011_volume_map.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.58502643 -0.73992701 0.33204231 243.48967674  
0.75308079 -0.64758138 -0.11622250 9.70695932  
0.30102059 0.18206145 0.93607704 -128.33262673  
Axis 0.19587489 0.02037111 0.98041728  
Axis point 131.90361604 67.14601525 0.00000000  
Rotation angle (degrees) 130.41094668  
Shift along axis -77.92826923  
  
Average map value = 0.008825 for 21234 atoms, 36077 outside contour  

> fitmap #2 inMap #1

Fit molecule 7vd8 (#2) to map cryosparc_P35_J1477_011_volume_map.mrc (#1)
using 36713 atoms  
average map value = 0.008825, steps = 80  
shifted from previous position = 0.00134  
rotated from previous position = 0.00202 degrees  
atoms outside contour = 36078, contour level = 0.11798  
  
Position of 7vd8 (#2) relative to cryosparc_P35_J1477_011_volume_map.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.58503461 -0.73992712 0.33202764 243.49257352  
0.75308754 -0.64757899 -0.11619208 9.70117419  
0.30098780 0.18206949 0.93608602 -128.32912043  
Axis 0.19585985 0.02038298 0.98042004  
Axis point 131.90483875 67.14426149 0.00000000  
Rotation angle (degrees) 130.41082697  
Shift along axis -77.92828421  
  

> view matrix models
> #2,-0.58503,-0.73993,0.33203,316.48,0.75309,-0.64758,-0.11619,3.0875,0.30099,0.18207,0.93609,24.125

> fitmap #2 inMap #1

Fit molecule 7vd8 (#2) to map cryosparc_P35_J1477_011_volume_map.mrc (#1)
using 36713 atoms  
average map value = 0.008572, steps = 144  
shifted from previous position = 4.45  
rotated from previous position = 2.92 degrees  
atoms outside contour = 35992, contour level = 0.11798  
  
Position of 7vd8 (#2) relative to cryosparc_P35_J1477_011_volume_map.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.58353084 -0.72798460 0.35990299 244.81245880  
0.73370286 -0.66256989 -0.15060289 27.23392709  
0.34809748 0.17618042 0.92075436 -137.73305612  
Axis 0.21817300 0.00788181 0.97587828  
Axis point 131.37046649 74.73823707 0.00000000  
Rotation angle (degrees) 131.50406560  
Shift along axis -80.78457677  
  

> view matrix models
> #2,-0.58353,-0.72798,0.3599,302.43,0.7337,-0.66257,-0.1506,19.286,0.3481,0.17618,0.92075,12.316

> view matrix models
> #2,-0.58353,-0.72798,0.3599,301.55,0.7337,-0.66257,-0.1506,13.533,0.3481,0.17618,0.92075,15.649

> view matrix models
> #2,-0.58909,-0.72533,0.35617,299.74,0.7323,-0.66554,-0.14417,13.999,0.34162,0.1759,0.92323,15.257

> fitmap #2 inMap #1

Fit molecule 7vd8 (#2) to map cryosparc_P35_J1477_011_volume_map.mrc (#1)
using 36713 atoms  
average map value = 0.008537, steps = 552  
shifted from previous position = 7.77  
rotated from previous position = 6.39 degrees  
atoms outside contour = 35963, contour level = 0.11798  
  
Position of 7vd8 (#2) relative to cryosparc_P35_J1477_011_volume_map.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.52142245 -0.77615264 0.35454999 226.34148423  
0.75147870 -0.61452102 -0.24009096 34.48275905  
0.40422566 0.14124796 0.90368724 -143.64514095  
Axis 0.24207508 -0.03153426 0.96974494  
Axis point 123.11287609 76.98895842 0.00000000  
Rotation angle (degrees) 128.03393696  
Shift along axis -85.59490368  
  

> view matrix models
> #2,0.57482,-0.28506,-0.76702,190.05,-0.71332,-0.63386,-0.299,296.09,-0.40095,0.719,-0.56769,286.6

> volume #1 level 0.2045

> fitmap #2 inMap #1

Fit molecule 7vd8 (#2) to map cryosparc_P35_J1477_011_volume_map.mrc (#1)
using 36713 atoms  
average map value = 0.009925, steps = 96  
shifted from previous position = 0.74  
rotated from previous position = 1.88 degrees  
atoms outside contour = 36502, contour level = 0.20449  
  
Position of 7vd8 (#2) relative to cryosparc_P35_J1477_011_volume_map.mrc (#1)
coordinates:  
Matrix rotation and translation  
0.55632422 -0.30726913 -0.77206798 130.64941298  
-0.73530488 -0.61483428 -0.28514111 305.84333505  
-0.38707882 0.72633629 -0.56798371 128.38255793  
Axis 0.86908815 -0.33079287 -0.36777964  
Axis point 0.00000000 156.44771086 146.17641443  
Rotation angle (degrees) 144.41438723  
Shift along axis -34.84143048  
  

> view matrix models
> #2,-0.57088,0.20986,-0.79376,345.4,-0.49787,-0.85723,0.13143,223.88,-0.65285,0.47022,0.59387,206.4

> view matrix models
> #2,-0.83857,-0.52282,0.15315,349.23,0.47174,-0.83746,-0.27589,101.44,0.2725,-0.15911,0.94891,62.837

> fitmap #2 inMap #1

Fit molecule 7vd8 (#2) to map cryosparc_P35_J1477_011_volume_map.mrc (#1)
using 36713 atoms  
average map value = 0.007122, steps = 516  
shifted from previous position = 2.07  
rotated from previous position = 1.18 degrees  
atoms outside contour = 36602, contour level = 0.20449  
  
Position of 7vd8 (#2) relative to cryosparc_P35_J1477_011_volume_map.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.83224279 -0.52879543 0.16657498 282.33485418  
0.47895246 -0.83708117 -0.26438525 110.28489341  
0.27924251 -0.14025123 0.94992269 -95.04778081  
Axis 0.12150986 -0.11028576 0.98644432  
Axis point 132.76705817 90.34756162 0.00000000  
Rotation angle (degrees) 149.28298974  
Shift along axis -71.61573006  
  

> fitmap #2 inMap #1

Fit molecule 7vd8 (#2) to map cryosparc_P35_J1477_011_volume_map.mrc (#1)
using 36713 atoms  
average map value = 0.007122, steps = 148  
shifted from previous position = 0.00313  
rotated from previous position = 0.0027 degrees  
atoms outside contour = 36603, contour level = 0.20449  
  
Position of 7vd8 (#2) relative to cryosparc_P35_J1477_011_volume_map.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.83226080 -0.52877844 0.16653894 282.33744734  
0.47894625 -0.83709066 -0.26436646 110.28601337  
0.27919949 -0.14025865 0.94993424 -95.04293135  
Axis 0.12148739 -0.11028183 0.98644753  
Axis point 132.76726065 90.34738752 0.00000000  
Rotation angle (degrees) 149.28388406  
Shift along axis -71.61696833  
  

> volume #1 level 0.1577

> toolshed show

> volume #1 level 0.09503

> view matrix models
> #2,-0.91275,-0.31101,0.26488,326.41,0.12564,-0.83067,-0.5424,198.52,0.38872,-0.46179,0.79727,96.19

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.91275,-0.31101,0.26488,319.51,0.12564,-0.83067,-0.5424,197.49,0.38872,-0.46179,0.79727,90.854

> view matrix models
> #2,-0.91275,-0.31101,0.26488,258.89,0.12564,-0.83067,-0.5424,179.03,0.38872,-0.46179,0.79727,79.495

> view matrix models
> #2,-0.91275,-0.31101,0.26488,242.61,0.12564,-0.83067,-0.5424,240.65,0.38872,-0.46179,0.79727,-7.5951

> ui mousemode right clip

[Repeated 1 time(s)]

> ui mousemode right "clip rotate"

> ui mousemode right zone

> zone /A:60

> undo

[Repeated 9 time(s)]

> select add #2

36713 atoms, 34608 bonds, 560 pseudobonds, 6929 residues, 4 models selected  

> select subtract #2

24 models selected  

> hide #!2 models

> select add #1

3 models selected  

> select subtract #1

Nothing selected  

> ui mousemode right zone

> ui mousemode right clip

> ui mousemode right zone

> ui mousemode right clip

> ui mousemode right "clip rotate"

[Repeated 1 time(s)]

> select add #1

3 models selected  

> show #!2 models

> select add #2

36713 atoms, 34608 bonds, 560 pseudobonds, 6929 residues, 6 models selected  

> hide #!2 models

> show #!2 models

> ui mousemode right clip

> ui mousemode right zone

> zone label false

> zone clear

> select clear

> select /A:102

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select up

230 atoms, 231 bonds, 30 residues, 2 models selected  

> select up

1413 atoms, 1442 bonds, 172 residues, 2 models selected  

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.58353,-0.72798,0.3599,316.87,0.7337,-0.66257,-0.1506,97.555,0.3481,0.17618,0.92075,-35.696

> hide #!2 models

> show #!2 models

> ui mousemode right "clip rotate"

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.58353,-0.72798,0.3599,236.33,0.7337,-0.66257,-0.1506,49.372,0.3481,0.17618,0.92075,-185.44

> ui mousemode right clip

> volume #1 level 0.07649

> volume #1 step 1

> volume #1 level 0.1246

> volume #1 step 4

> volume #1 level 0.08578

> volume #1 step 2

> volume #1 style mesh

> volume #1 style image

> volume #1 maximumIntensityProjection true

> volume #1 style mesh maximumIntensityProjection false

> volume #1 change image level -0.006457,0 level 0.1769,0.8 level 0.3971,1

> volume #1 level 0.04606

> volume #1 level 0.0796

> volume #1 style surface

> fitmap #2 inMap #1

Fit molecule 7vd8 (#2) to map cryosparc_P35_J1477_011_volume_map.mrc (#1)
using 36713 atoms  
average map value = 0, steps = 24  
shifted from previous position = 0  
rotated from previous position = 0 degrees  
atoms outside contour = 36713, contour level = 0.079605  
  
Position of 7vd8 (#2) relative to cryosparc_P35_J1477_011_volume_map.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.58353084 -0.72798460 0.35990299 169.75478629  
0.73370286 -0.66256989 -0.15060289 60.48696770  
0.34809748 0.17618042 0.92075436 -340.78950371  
Axis 0.21817300 0.00788181 0.97587828  
Axis point 108.47601252 85.65156111 0.00000000  
Rotation angle (degrees) 131.50406560  
Shift along axis -295.05641722  
  

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.58353,-0.72798,0.3599,204.77,0.7337,-0.66257,-0.1506,58.609,0.3481,0.17618,0.92075,4.0967

> view matrix models
> #2,-0.58353,-0.72798,0.3599,184.13,0.7337,-0.66257,-0.1506,166.58,0.3481,0.17618,0.92075,-76.553

> ui mousemode right clip

> ui tool show "Side View"

> view orient

> volume #1 level 0.1317

> volume #1 step 1

> lighting full

> lighting flat

> lighting full

> lighting soft

> volume #1 level 0.1391

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.58353,-0.72798,0.3599,213.09,0.7337,-0.66257,-0.1506,9.1312,0.3481,0.17618,0.92075,11.955

> view matrix models
> #2,-0.58353,-0.72798,0.3599,259.1,0.7337,-0.66257,-0.1506,25.477,0.3481,0.17618,0.92075,27.612

> view matrix models
> #2,-0.58353,-0.72798,0.3599,254.84,0.7337,-0.66257,-0.1506,37.496,0.3481,0.17618,0.92075,31.292

> view matrix models
> #2,-0.58353,-0.72798,0.3599,254.3,0.7337,-0.66257,-0.1506,34.411,0.3481,0.17618,0.92075,36.623

> view matrix models
> #2,-0.58353,-0.72798,0.3599,260.06,0.7337,-0.66257,-0.1506,41.565,0.3481,0.17618,0.92075,23.338

> volume #1 level 0.2325

> view matrix models
> #2,-0.58353,-0.72798,0.3599,233.11,0.7337,-0.66257,-0.1506,-50.751,0.3481,0.17618,0.92075,87.219

> view matrix models
> #2,-0.58353,-0.72798,0.3599,221.15,0.7337,-0.66257,-0.1506,-24.833,0.3481,0.17618,0.92075,47.224

> ui mousemode right "rotate selected models"

> view matrix models
> #2,0.35881,0.91658,-0.17645,-58.193,-0.78718,0.19555,-0.5849,210.91,-0.5016,0.34877,0.79168,197.72

> view matrix models
> #2,-0.49342,0.78854,-0.36707,133.98,-0.66322,-0.61413,-0.42776,257.07,-0.56273,0.03238,0.826,238.99

> view matrix models
> #2,-0.45773,0.80765,0.37174,27.946,-0.88281,-0.46249,-0.082192,234.16,0.10554,-0.36579,0.92469,149.9

> view matrix models
> #2,0.11702,0.99066,0.069932,-55.491,-0.98511,0.12472,-0.11831,192.63,-0.12593,-0.055045,0.99051,148.53

> ui mousemode right "translate selected models"

> view matrix models
> #2,0.11702,0.99066,0.069932,-59.655,-0.98511,0.12472,-0.11831,201.62,-0.12593,-0.055045,0.99051,143.75

> view matrix models
> #2,0.11702,0.99066,0.069932,-50.56,-0.98511,0.12472,-0.11831,203.27,-0.12593,-0.055045,0.99051,132.54

> view matrix models
> #2,0.11702,0.99066,0.069932,-51.625,-0.98511,0.12472,-0.11831,202.5,-0.12593,-0.055045,0.99051,131.73

> view matrix models
> #2,0.11702,0.99066,0.069932,-46.278,-0.98511,0.12472,-0.11831,206.72,-0.12593,-0.055045,0.99051,137.14

> view matrix models
> #2,0.11702,0.99066,0.069932,-49.733,-0.98511,0.12472,-0.11831,202.61,-0.12593,-0.055045,0.99051,128.55

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.98555,-0.15832,-0.060278,291.79,-0.16556,0.82483,0.5406,-108.5,-0.035868,0.54277,-0.83912,288.09

> view matrix models
> #2,-0.95104,-0.30897,0.0073834,293.26,-0.29558,0.91628,0.27029,-59.561,-0.090276,0.25487,-0.96275,345.87

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.95104,-0.30897,0.0073834,333.91,-0.29558,0.91628,0.27029,-37.833,-0.090276,0.25487,-0.96275,348.76

> ui mousemode right "rotate selected models"

> ui mousemode right "translate selected models"

> ui mousemode right translate

> ui mousemode right rotate

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.95104,-0.30897,0.0073834,333.72,-0.29558,0.91628,0.27029,-38.197,-0.090276,0.25487,-0.96275,351.06

> ui mousemode right rotate

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.95104,-0.30897,0.0073834,334.49,-0.29558,0.91628,0.27029,-38.266,-0.090276,0.25487,-0.96275,348.78

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.913,-0.40535,0.045968,333.18,-0.37266,0.87455,0.31029,-25.122,-0.16598,0.26616,-0.94953,359.37

> view matrix models
> #2,-0.90416,-0.41589,0.097639,325.94,-0.35637,0.86032,0.36449,-33.634,-0.23559,0.29476,-0.92607,365.62

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.90416,-0.41589,0.097639,324.41,-0.35637,0.86032,0.36449,-31.45,-0.23559,0.29476,-0.92607,364.74

> view matrix models
> #2,-0.90416,-0.41589,0.097639,261.03,-0.35637,0.86032,0.36449,31.414,-0.23559,0.29476,-0.92607,368.28

> view matrix models
> #2,-0.90416,-0.41589,0.097639,265.15,-0.35637,0.86032,0.36449,30.019,-0.23559,0.29476,-0.92607,367.02

> view matrix models
> #2,-0.90416,-0.41589,0.097639,262.8,-0.35637,0.86032,0.36449,21.837,-0.23559,0.29476,-0.92607,378.02

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.80329,-0.47309,-0.36182,311.65,-0.5837,0.50459,0.63615,65.935,-0.11838,0.7222,-0.68147,277.64

> view matrix models
> #2,-0.67784,-0.35914,-0.64152,313.51,-0.72605,0.18969,0.66096,122.87,-0.11569,0.9138,-0.38933,217.5

> view matrix models
> #2,-0.9097,-0.36459,0.1988,244.79,-0.30734,0.91305,0.26811,19.958,-0.27926,0.1828,-0.94265,400.38

> view matrix models
> #2,-0.82255,0.56047,-0.09632,166.26,0.28926,0.55816,0.77768,-115.28,0.48963,0.61182,-0.62124,172.75

> view matrix models
> #2,-0.99997,-0.0070267,0.0012788,247.69,9.9652e-05,0.16531,0.98624,-47.676,-0.0071414,0.98622,-0.1653,160.48

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.99997,-0.0070267,0.0012788,299.77,9.9652e-05,0.16531,0.98624,-75.835,-0.0071414,0.98622,-0.1653,130.08

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.99526,-0.092924,-0.028838,312.35,-0.040744,0.1289,0.99082,-65.102,-0.088354,0.98729,-0.13207,140.14

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.99526,-0.092924,-0.028838,312.57,-0.040744,0.1289,0.99082,-65.878,-0.088354,0.98729,-0.13207,140.68

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.99526,-0.092924,-0.028838,314.65,-0.040744,0.1289,0.99082,-64.56,-0.088354,0.98729,-0.13207,140.29

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.99147,-0.12492,-0.037102,318.59,-0.05187,0.11713,0.99176,-61.392,-0.11955,0.98523,-0.12261,144.87

> view matrix models
> #2,-0.97869,-0.20434,-0.020282,322.82,-0.033147,0.059737,0.99766,-59.212,-0.20265,0.97708,-0.065238,153.11

> view matrix models
> #2,-0.97618,-0.17311,-0.1308,333.52,-0.15732,0.14957,0.97615,-43.983,-0.14941,0.97348,-0.17324,158.21

> view matrix models
> #2,-0.99838,0.01188,-0.055684,307.22,-0.052242,0.19776,0.97886,-68.499,0.022641,0.98018,-0.19682,129.71

> view matrix models
> #2,-0.98981,0.0014023,-0.14237,318.28,-0.13678,0.26825,0.95359,-57.757,0.039527,0.96335,-0.26532,137.58

> view matrix models
> #2,-0.99691,-0.076862,-0.016397,311.54,-0.026448,0.13164,0.99095,-67.443,-0.074008,0.98831,-0.13326,137.77

> view matrix models
> #2,-0.95966,-0.2634,-0.098351,336.21,-0.1207,0.07001,0.99022,-43.65,-0.25394,0.96214,-0.098978,168.41

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.95966,-0.2634,-0.098351,334.01,-0.1207,0.07001,0.99022,-43.096,-0.25394,0.96214,-0.098978,170.88

> ui mousemode right translate

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.95966,-0.2634,-0.098351,333.71,-0.1207,0.07001,0.99022,-42.696,-0.25394,0.96214,-0.098978,170.28

> ui mousemode right "rotate selected models"

> view matrix models
> #2,-0.97022,-0.2422,-0.0024001,320.61,0.023175,-0.10269,0.99444,-50.054,-0.2411,0.96478,0.10525,140.73

> ui mousemode right "translate selected models"

> view matrix models
> #2,-0.97022,-0.2422,-0.0024001,321.58,0.023175,-0.10269,0.99444,-51.544,-0.2411,0.96478,0.10525,142.88

> fitmap #2 inMap #1

Fit molecule 7vd8 (#2) to map cryosparc_P35_J1477_011_volume_map.mrc (#1)
using 36713 atoms  
average map value = 0.2133, steps = 196  
shifted from previous position = 15.6  
rotated from previous position = 15.3 degrees  
atoms outside contour = 20077, contour level = 0.23253  
  
Position of 7vd8 (#2) relative to cryosparc_P35_J1477_011_volume_map.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.99999995 0.00010236 -0.00003384 234.71452966  
-0.00003383 0.00003407 0.99999996 -47.52252263  
0.00010236 0.99999995 -0.00003407 -47.53494239  
Axis -0.00004072 -0.70712286 -0.70709070  
Axis point 117.35863352 0.00000000 0.00070102  
Rotation angle (degrees) 179.99448223  
Shift along axis 67.20622093  
  

> volume #1 level 0.2075

> volume #1 level 0.2085

> volume #1 level 0.1234

> view matrix models
> #2,-1,0.00010236,-3.3838e-05,308.12,-3.3835e-05,3.4073e-05,1,-61.212,0.00010236,1,-3.4073e-05,107.63

> volume #1 level 0.1298

> volume #1 level 0.1909

> volume #1 level 0.2418

> undo

[Repeated 1 time(s)]

> view matrix models
> #2,-0.97022,-0.2422,-0.0024001,320.7,0.023175,-0.10269,0.99444,-50.416,-0.2411,0.96478,0.10525,140.87

> fitmap #2 inMap #1

Fit molecule 7vd8 (#2) to map cryosparc_P35_J1477_011_volume_map.mrc (#1)
using 36713 atoms  
average map value = 0.2133, steps = 192  
shifted from previous position = 14.6  
rotated from previous position = 15.3 degrees  
atoms outside contour = 21656, contour level = 0.24178  
  
Position of 7vd8 (#2) relative to cryosparc_P35_J1477_011_volume_map.mrc (#1)
coordinates:  
Matrix rotation and translation  
-0.99999996 0.00002283 -0.00001225 234.71836009  
-0.00001225 0.00000546 0.99999996 -47.52354189  
0.00002284 0.99999996 -0.00000547 -47.52128727  
Axis -0.00006773 -0.70712437 -0.70708919  
Axis point 117.36145621 0.00000000 0.00200402  
Rotation angle (degrees) 179.99857860  
Shift along axis 67.19094485  
  

> volume #1 level 0.2149

> ui mousemode right translate

> lighting simple

> volume #1 level 0.1363

> lighting simple

> lighting soft

> lighting full

> volume #1 level 0.103

> volume #1 level 0.09376

> volume #1 level 0.1104

> volume #1 level 0.1308

Traceback (most recent call last):  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/sideview/tool.py", line 117, in exposeEvent  
self.render()  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/sideview/tool.py", line 288, in render  
self.view.draw()  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 177, in draw  
self._draw_scene(camera, drawings)  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 261, in _draw_scene  
draw_highlight_outline(r, highlight_drawings, color = self._highlight_color,  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1614, in draw_highlight_outline  
r.outline.finish_rendering_outline(color=color, pixel_width=pixel_width)  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1885, in finish_rendering_outline  
r.pop_framebuffer()  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 722, in pop_framebuffer  
fb.activate()  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2271, in activate  
GL.glDrawBuffer(self._draw_buffer)  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1282,  
description = b'invalid operation',  
baseOperation = glDrawBuffer,  
cArguments = (GL_BACK,)  
)  
  
OpenGL.error.GLError: GLError(  
err = 1282,  
description = b'invalid operation',  
baseOperation = glDrawBuffer,  
cArguments = (GL_BACK,)  
)  
  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
  
See log for complete Python traceback.  
  
An error occurred in drawing the scene. Redrawing graphics is now stopped to
avoid a continuous stream of error messages. To restart graphics use the
command "graphics restart" after changing the settings that caused the error.  
  
GLError(  
err = 1282,  
description = b'invalid operation',  
baseOperation = glDrawBuffer,  
cArguments = (GL_BACK,)  
)  
  
Traceback (most recent call last):  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/core/updateloop.py", line 73, in draw_new_frame  
view.draw(check_for_changes = False)  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 177, in draw  
self._draw_scene(camera, drawings)  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 215, in _draw_scene  
shadow, multishadow = self._compute_shadowmaps(opaque_drawings,
transparent_drawings, camera)  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 612, in _compute_shadowmaps  
shadow_enabled = r.shadow.use_shadow_map(camera, shadow_drawings)  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1440, in use_shadow_map  
shadow_map = self._finish_rendering_shadowmap() # Depth texture  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1470, in
_finish_rendering_shadowmap  
fb = r.pop_framebuffer()  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 722, in pop_framebuffer  
fb.activate()  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2271, in activate  
GL.glDrawBuffer(self._draw_buffer)  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1282,  
description = b'invalid operation',  
baseOperation = glDrawBuffer,  
cArguments = (GL_BACK,)  
)  
  
Traceback (most recent call last):  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 138, in invoke  
return self._func(self._name, data)  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/sideview/tool.py", line 113, in _redraw  
self.render()  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/sideview/tool.py", line 288, in render  
self.view.draw()  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 177, in draw  
self._draw_scene(camera, drawings)  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/view.py", line 261, in _draw_scene  
draw_highlight_outline(r, highlight_drawings, color = self._highlight_color,  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/drawing.py", line 1614, in draw_highlight_outline  
r.outline.finish_rendering_outline(color=color, pixel_width=pixel_width)  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 1885, in finish_rendering_outline  
r.pop_framebuffer()  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 722, in pop_framebuffer  
fb.activate()  
File "/usr/libexec/UCSF-ChimeraX-daily/lib/python3.9/site-
packages/chimerax/graphics/opengl.py", line 2271, in activate  
GL.glDrawBuffer(self._draw_buffer)  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
OpenGL.error.GLError: GLError(  
err = 1282,  
description = b'invalid operation',  
baseOperation = glDrawBuffer,  
cArguments = (GL_BACK,)  
)  
  
Error processing trigger "frame drawn":  
OpenGL.error.GLError: GLError(  
err = 1282,  
description = b'invalid operation',  
baseOperation = glDrawBuffer,  
cArguments = (GL_BACK,)  
)  
  
File "src/errorchecker.pyx", line 58, in
OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 530.30.02
OpenGL renderer: NVIDIA RTX A4500/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: en_US.UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: xcb

XDG_SESSION_TYPE=x11
DESKTOP_SESSION=gnome
XDG_SESSION_DESKTOP=gnome
XDG_CURRENT_DESKTOP=GNOME
DISPLAY=:1
Manufacturer: Dell Inc.
Model: Precision 3660
OS: AlmaLinux 8.8 Sapphire Caracal
Architecture: 64bit ELF
Virtual Machine: none
CPU: 24 12th Gen Intel(R) Core(TM) i9-12900K
Cache Size: 30720 KB
Memory:
	              total        used        free      shared  buff/cache   available
	Mem:           30Gi       7.8Gi        17Gi        82Mi       5.1Gi        22Gi
	Swap:          15Gi          0B        15Gi

Graphics:
	0000:01:00.0 VGA compatible controller [0300]: NVIDIA Corporation GA102GL [RTX A4500] [10de:2232] (rev a1)	
	Subsystem: Dell Device [1028:163c]	
	Kernel driver in use: nvidia

Installed Packages:
    alabaster: 0.7.13
    appdirs: 1.4.4
    asttokens: 2.2.1
    Babel: 2.12.1
    backcall: 0.2.0
    beautifulsoup4: 4.11.2
    blockdiag: 3.0.0
    build: 0.10.0
    certifi: 2023.5.7
    cftime: 1.6.2
    charset-normalizer: 3.1.0
    ChimeraX-AddCharge: 1.5.11
    ChimeraX-AddH: 2.2.5
    ChimeraX-AlignmentAlgorithms: 2.0.1
    ChimeraX-AlignmentHdrs: 3.3.1
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.9.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.45.7
    ChimeraX-AtomicLibrary: 10.0.7
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3.2
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.10.3
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.2
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3.1
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.3
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.7.dev202306010115
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.4.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2
    ChimeraX-DistMonitor: 1.4
    ChimeraX-DockPrep: 1.1.2
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-LinuxSupport: 1.0.1
    ChimeraX-ListInfo: 1.2
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.4
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.12
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.9
    ChimeraX-ModelPanel: 1.3.7
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.0
    ChimeraX-NRRD: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.10.2
    ChimeraX-PDB: 2.7.2
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 3.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.1
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.8.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.12
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1.2
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.2
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.28.4
    ChimeraX-uniprot: 2.2.2
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.2.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.1
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.1.3
    contourpy: 1.0.7
    cxservices: 1.2.2
    cycler: 0.11.0
    Cython: 0.29.33
    debugpy: 1.6.7
    decorator: 5.1.1
    distro: 1.7.0
    docutils: 0.19
    executing: 1.2.0
    filelock: 3.9.0
    fonttools: 4.39.4
    funcparserlib: 1.0.1
    grako: 3.16.5
    h5py: 3.8.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.35
    imagecodecs: 2022.9.26
    imagesize: 1.4.1
    importlib-metadata: 6.6.0
    ipykernel: 6.21.1
    ipython: 8.10.0
    ipython-genutils: 0.2.0
    ipywidgets: 8.0.6
    jedi: 0.18.2
    Jinja2: 3.1.2
    jupyter-client: 8.0.2
    jupyter-core: 5.3.0
    jupyterlab-widgets: 3.0.7
    kiwisolver: 1.4.4
    line-profiler: 4.0.2
    lxml: 4.9.2
    lz4: 4.3.2
    MarkupSafe: 2.1.2
    matplotlib: 3.6.3
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.2
    networkx: 2.8.8
    nibabel: 5.0.1
    nptyping: 2.5.0
    numexpr: 2.8.4
    numpy: 1.23.5
    openvr: 1.23.701
    packaging: 23.1
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.3.0
    pip: 23.0
    pkginfo: 1.9.6
    platformdirs: 3.5.1
    prompt-toolkit: 3.0.38
    psutil: 5.9.4
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.14.0
    pynrrd: 1.0.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    pyproject-hooks: 1.0.0
    PyQt6-commercial: 6.4.2
    PyQt6-Qt6: 6.4.3
    PyQt6-sip: 13.4.1
    PyQt6-WebEngine-commercial: 6.4.0
    PyQt6-WebEngine-Qt6: 6.4.3
    python-dateutil: 2.8.2
    pytz: 2023.3
    pyzmq: 25.1.0
    qtconsole: 5.4.0
    QtPy: 2.3.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.9.3
    setuptools: 67.4.0
    sfftk-rw: 0.7.3
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.4.1
    sphinx: 6.1.3
    sphinx-autodoc-typehints: 1.22
    sphinxcontrib-applehelp: 1.0.4
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.1
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.6.2
    tables: 3.7.0
    tcia-utils: 1.2.0
    tifffile: 2022.10.10
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.3.2
    traitlets: 5.9.0
    typing-extensions: 4.6.2
    tzdata: 2023.3
    urllib3: 2.0.2
    wcwidth: 0.2.6
    webcolors: 1.12
    wheel: 0.38.4
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.7
    zipp: 3.15.0

Change History (2)

comment:1 by Eric Pettersen, 2 years ago

Component: Unassigned → Graphics
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → glDrawBuffer: invalid operation while setting volume level

comment:2 by Tom Goddard, 2 years ago

Resolution: → can't reproduce
Status: assigned → closed

OpenGL graphics error, apparently no GL_BACK buffer when expose event on side view happened. Only ever see this on Linux. Has been reported many times.

Note: See TracTickets for help on using tickets.