![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#9606 closed defect (duplicate)
Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.4.1-arm64-arm-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x00000001f5465e00 (most recent call first):
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
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{
"uptime" : 130000,
"procRole" : "Background",
"version" : 2,
"userID" : 501,
"deployVersion" : 210,
"modelCode" : "MacBookPro17,1",
"coalitionID" : 2631,
"osVersion" : {
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"build" : "22F770820d",
"releaseType" : "User"
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"captureTime" : "2023-08-21 12:37:52.4211 +0100",
"incident" : "D6A99721-22C3-429A-8477-451FE561BA88",
"pid" : 44066,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2023-08-21 08:49:23.4730 +0100",
"procStartAbsTime" : 3022370537710,
"procExitAbsTime" : 3351383875955,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.1","CFBundleVersion":"1.6.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"D4227C4C-FE6E-54C7-89B4-3913C58B8D19","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "67917E8B-5E8A-6D38-1B8F-04211C93A8DF",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 0,
"wakeTime" : 14667,
"sleepWakeUUID" : "CC231090-6CC0-4989-9901-399350308910",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 105623312138216\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO 601058000000-601060000000 [128.0M] rw-\/rwx SM=PRV ",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 105623312138216\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO 601058000000-601060000000 [128.0M] rw-\/rwx SM=PRV ",
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===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/leanaherlinghaus/Projects/runs1/input110/relaxed_model_3_multimer_v3_pred_3.pdb
Chain information for relaxed_model_3_multimer_v3_pred_3.pdb #1
---
Chain | Description
A B | No description available
> select #1/A
1726 atoms, 1746 bonds, 102 residues, 1 model selected
Alignment identifier is 1/A
> open /Users/leanaherlinghaus/Downloads/whole-motor-fitted.cxs format session
Opened WT-fullmotor_job940_postprocess_hidedust.mrc as #1, grid size
800,800,800, pixel 2.2, shown at level 0.000998, step 1, values float32
Opened scaffold_job975_lafter_map.mrc as #2, grid size 800,800,800, pixel 2.2,
shown at level 0.0449, step 1, values float32
opened ChimeraX session
> hide #36 models
> hide #35 models
> hide #!32 models
> hide #!31 models
> hide #!29 models
> hide #!28 models
> hide #!27 models
> hide #!26 models
> hide #!25 models
> hide #!24 models
> hide #!23 models
> hide #!22 models
> hide #21 models
> hide #!30 models
> hide #33 models
> hide #34 models
> hide #!13 models
> hide #12 models
> hide #11 models
> hide #10 models
> hide #9 models
> hide #8 models
> hide #7 models
> hide #6.3 models
> show #6.3 models
> hide #!6 models
> hide #!5 models
> hide #4 models
> hide #!1 models
> ui mousemode right zoom
> undo
> redo
> hide #!1 models
> hide #4 models
> view orient
> turn 90,0,0
> open
> /Users/leanaherlinghaus/Projects/runs1/input106/relaxed_model_4_multimer_v3_pred_2.pdb
Chain information for relaxed_model_4_multimer_v3_pred_2.pdb #3
---
Chain | Description
A | No description available
B | No description available
> matchmaker #3 with #16
Expected a keyword
> matchmaker #3 to #16
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker PflAB_dimer_isolde_v2_fitted_C17.pdb, chain A (#16) with
relaxed_model_4_multimer_v3_pred_2.pdb, chain B (#3), sequence alignment score
= 3977.3
RMSD between 291 pruned atom pairs is 1.020 angstroms; (across all 772 pairs:
11.643)
> select #3
23895 atoms, 24112 bonds, 1481 residues, 1 model selected
> view sel
> view orient
> view sel
> color sel bychain
> turn 90,0,0
> select subtract #3
Nothing selected
> hide #14 models
> hide #!15 models
> hide #17 models
> hide #18 models
> hide #!19 models
> matchmaker #3 to 16/B
Invalid "to" argument: invalid atoms specifier
> matchmaker #3 to #16/B
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker PflAB_dimer_isolde_v2_fitted_C17.pdb, chain B (#16) with
relaxed_model_4_multimer_v3_pred_2.pdb, chain A (#3), sequence alignment score
= 3461.8
RMSD between 623 pruned atom pairs is 0.842 angstroms; (across all 682 pairs:
2.146)
> matchmaker #3 to #16/A
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker PflAB_dimer_isolde_v2_fitted_C17.pdb, chain A (#16) with
relaxed_model_4_multimer_v3_pred_2.pdb, chain B (#3), sequence alignment score
= 3977.3
RMSD between 291 pruned atom pairs is 1.020 angstroms; (across all 772 pairs:
11.643)
> close #3
> show #17 models
> open
> /Users/leanaherlinghaus/Projects/runs1/input110/relaxed_model_3_multimer_v3_pred_3.pdb
Chain information for relaxed_model_3_multimer_v3_pred_3.pdb #3
---
Chain | Description
A B | No description available
> matchmaker #3 to #17
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker pflD_fitted_C17.pdb, chain A (#17) with
relaxed_model_3_multimer_v3_pred_3.pdb, chain A (#3), sequence alignment score
= 370.6
RMSD between 33 pruned atom pairs is 0.559 angstroms; (across all 73 pairs:
18.669)
> select #3
3452 atoms, 3492 bonds, 204 residues, 1 model selected
> view sel
> view orient
> turn 90,0,0
> color sel bychain
> select subtract #3
Nothing selected
> fitmap #3 inMap #2
Fit molecule relaxed_model_3_multimer_v3_pred_3.pdb (#3) to map
scaffold_job975_lafter_map.mrc (#2) using 3452 atoms
average map value = 0.06296, steps = 64
shifted from previous position = 2.66
rotated from previous position = 11.9 degrees
atoms outside contour = 1822, contour level = 0.044943
Position of relaxed_model_3_multimer_v3_pred_3.pdb (#3) relative to
scaffold_job975_lafter_map.mrc (#2) coordinates:
Matrix rotation and translation
0.98343439 0.00807635 -0.18108443 831.03567877
0.04048845 0.96397908 0.26287833 556.29061750
0.17668470 -0.26585542 0.94768318 917.38574624
Axis -0.82714804 -0.55969197 0.05070530
Axis point 0.00000000 3553.94678558 398.20045580
Rotation angle (degrees) 18.63949364
Shift along axis -952.22459904
> close #3
> view orient
> open
> /Users/leanaherlinghaus/Projects/runs2/input7/relaxed_model_2_multimer_v3_pred_3.pdb
Chain information for relaxed_model_2_multimer_v3_pred_3.pdb #3
---
Chain | Description
A | No description available
B | No description available
> matchmaker #3 to #16
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker PflAB_dimer_isolde_v2_fitted_C17.pdb, chain A (#16) with
relaxed_model_2_multimer_v3_pred_3.pdb, chain B (#3), sequence alignment score
= 3838.5
RMSD between 277 pruned atom pairs is 1.052 angstroms; (across all 773 pairs:
8.328)
> turn 90,0,0
> turn 0,45,0
> select #3
25906 atoms, 26147 bonds, 1608 residues, 1 model selected
> color sel bychain
> view sel
> select subtract #3
Nothing selected
> matchmaker #3 to 16/B
Invalid "to" argument: invalid atoms specifier
> matchmaker #3 to #16/B
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker PflAB_dimer_isolde_v2_fitted_C17.pdb, chain B (#16) with
relaxed_model_2_multimer_v3_pred_3.pdb, chain A (#3), sequence alignment score
= 3172.6
RMSD between 86 pruned atom pairs is 0.809 angstroms; (across all 682 pairs:
71.124)
> matchmaker #3 to #16/A
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker PflAB_dimer_isolde_v2_fitted_C17.pdb, chain A (#16) with
relaxed_model_2_multimer_v3_pred_3.pdb, chain B (#3), sequence alignment score
= 3838.5
RMSD between 277 pruned atom pairs is 1.052 angstroms; (across all 773 pairs:
8.328)
> view orient
> turn 90,0,0
> turn 0,45,0
> select #3
25906 atoms, 26147 bonds, 1608 residues, 1 model selected
> view sel
> select subtract #3
Nothing selected
> save /Users/leanaherlinghaus/Desktop/image23.png supersample 3
> turn 90,0,0
> select #3
25906 atoms, 26147 bonds, 1608 residues, 1 model selected
> view sel
> select subtract #3
Nothing selected
> save /Users/leanaherlinghaus/Desktop/image24.png supersample 3
> matchmaker #3 to 16/B
Invalid "to" argument: invalid atoms specifier
> matchmaker #3 to #16/B
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker PflAB_dimer_isolde_v2_fitted_C17.pdb, chain B (#16) with
relaxed_model_2_multimer_v3_pred_3.pdb, chain A (#3), sequence alignment score
= 3172.6
RMSD between 86 pruned atom pairs is 0.809 angstroms; (across all 682 pairs:
71.124)
> select #3
25906 atoms, 26147 bonds, 1608 residues, 1 model selected
> view sel
> select subtract #3
Nothing selected
> matchmaker #3 to #16
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker PflAB_dimer_isolde_v2_fitted_C17.pdb, chain A (#16) with
relaxed_model_2_multimer_v3_pred_3.pdb, chain B (#3), sequence alignment score
= 3838.5
RMSD between 277 pruned atom pairs is 1.052 angstroms; (across all 773 pairs:
8.328)
> select #3
25906 atoms, 26147 bonds, 1608 residues, 1 model selected
> view sel
> turn 90,0,0
> select subtract #3
Nothing selected
> save /Users/leanaherlinghaus/Desktop/image25.png supersample 3
> turn 90,0,0
> hide #20 models
> hide #17 models
> save /Users/leanaherlinghaus/Desktop/image26.png supersample 3
> turn 90,0,0
> save /Users/leanaherlinghaus/Desktop/image27.png supersample 3
> hide #!2 models
> hide #16 models
> view orient
> save /Users/leanaherlinghaus/Desktop/image28.png supersample 3
> show #!2 models
> show #16 models
> save /Users/leanaherlinghaus/Desktop/image29.png supersample 3
> hide #3 models
> open
> /Users/leanaherlinghaus/Projects/runs1/input106/relaxed_model_4_multimer_v3_pred_2.pdb
Chain information for relaxed_model_4_multimer_v3_pred_2.pdb #37
---
Chain | Description
A | No description available
B | No description available
> matchmaker #37 to #16
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker PflAB_dimer_isolde_v2_fitted_C17.pdb, chain A (#16) with
relaxed_model_4_multimer_v3_pred_2.pdb, chain B (#37), sequence alignment
score = 3977.3
RMSD between 291 pruned atom pairs is 1.020 angstroms; (across all 772 pairs:
11.643)
> select #3
25906 atoms, 26147 bonds, 1608 residues, 1 model selected
> color #16,37 bychain
> undo
> select #37
23895 atoms, 24112 bonds, 1481 residues, 1 model selected
> color sel bychain
> select subtract #37
Nothing selected
> save /Users/leanaherlinghaus/Desktop/image30.png supersample 3
> hide #!2 models
> hide #16 models
> save /Users/leanaherlinghaus/Desktop/image31.png supersample 3
> show #!2 models
> show #16 models
> matchmaker #3 to #16/A/1.1
Invalid "to" argument: only initial part "#16/A/1" of atom specifier valid
> matchmaker #3 to #16/A/1
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker PflAB_dimer_isolde_v2_fitted_C17.pdb, chain A (#16) with
relaxed_model_2_multimer_v3_pred_3.pdb, chain B (#3), sequence alignment score
= 3838.5
RMSD between 277 pruned atom pairs is 1.052 angstroms; (across all 773 pairs:
8.328)
> matchmaker #3 to #16/A/2
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker PflAB_dimer_isolde_v2_fitted_C17.pdb, chain A (#16) with
relaxed_model_2_multimer_v3_pred_3.pdb, chain B (#3), sequence alignment score
= 3838.5
RMSD between 277 pruned atom pairs is 1.052 angstroms; (across all 773 pairs:
8.328)
> hide #!2 models
> show #!2 models
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Model Number: Z11C000LTSM/A
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 8422.121.1
OS Loader Version: 8422.121.1
Software:
System Software Overview:
System Version: macOS 13.4.1 (c) (22F770820d)
Kernel Version: Darwin 22.5.0
Time since boot: 3 days, 7 hours, 27 minutes
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 |
comment:2 by , 2 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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