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Opened 2 years ago
Closed 2 years ago
#9619 closed defect (duplicate)
Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-11.5.2-arm64-arm-64bit
ChimeraX Version: 1.6rc202304050652 (2023-04-05 06:52:02 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x0000000100b4bd40 (most recent call first):
File "/Applications/ChimeraX-1.6-rc2023.04.05.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/Applications/ChimeraX-1.6-rc2023.04.05.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6-rc2023.04.05.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6-rc2023.04.05.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6-rc2023.04.05.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [67377]
Path: /Applications/ChimeraX-1.6-rc2023.04.05.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.6.0 (1.6.0.0)
Code Type: ARM-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [67377]
User ID: 501
Date/Time: 2023-08-21 19:36:52.520 -0700
OS Version: macOS 11.5.2 (20G95)
Report Version: 12
Anonymous UUID: 9A74A338-FC0B-22AE-BF04-994283BC341A
Time Awake Since Boot: 510000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000018
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x18:
-->
__TEXT 1008b4000-1008b8000 [ 16K] r-x/r-x SM=COW /Applications/ChimeraX-1.6-rc2023.04.05.app/Contents/MacOS/ChimeraX
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00000001858a4e68 __pthread_kill + 8
1 libsystem_pthread.dylib 0x00000001858d743c pthread_kill + 292
2 libsystem_c.dylib 0x00000001857b6e10 raise + 32
3 libsystem_platform.dylib 0x0000000185922c44 _sigtramp + 56
4 QtGui 0x0000000142e1093c QMacCGContext::QMacCGContext(QPainter*) + 40
5 libqmacstyle.dylib 0x000000015055282c 0x150548000 + 43052
6 libqmacstyle.dylib 0x0000000150559fec 0x150548000 + 73708
7 QtWidgets 0x0000000142581630 QCommonStyle::drawControl(QStyle::ControlElement, QStyleOption const*, QPainter*, QWidget const*) const + 2132
8 libqmacstyle.dylib 0x000000015055779c 0x150548000 + 63388
9 QtWidgets 0x00000001425bd580 0x142510000 + 710016
10 QtWidgets 0x00000001426e7f58 QTabBar::paintEvent(QPaintEvent*) + 1584
11 QtWidgets 0x00000001425641ac QWidget::event(QEvent*) + 132
12 QtWidgets 0x00000001426e77b8 QTabBar::event(QEvent*) + 736
13 QtWidgets 0x000000014251a710 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 272
14 QtWidgets 0x000000014251c1ec QApplication::notify(QObject*, QEvent*) + 3396
15 QtWidgets.abi3.so 0x000000014204c6b8 sipQApplication::notify(QObject*, QEvent*) + 248
16 QtCore 0x00000001203dce9c QCoreApplication::notifyInternal2(QObject*, QEvent*) + 292
17 QtWidgets 0x000000014255743c QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 3312
18 QtWidgets 0x000000014255eacc QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 864
19 QtWidgets 0x000000014255753c QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 3568
20 QtWidgets 0x000000014255eacc QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 864
21 QtWidgets 0x000000014255753c QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 3568
22 QtWidgets 0x000000014255eacc QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 864
23 QtWidgets 0x000000014255753c QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 3568
24 QtWidgets 0x000000014255eacc QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 864
25 QtWidgets 0x000000014255753c QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 3568
26 QtWidgets 0x000000014255eacc QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 864
27 QtWidgets 0x000000014255e9bc QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 592
28 QtWidgets 0x000000014255e9bc QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 592
29 QtWidgets 0x000000014255e9bc QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 592
30 QtWidgets 0x000000014255e9bc QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 592
31 QtWidgets 0x000000014255e9bc QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 592
32 QtWidgets 0x000000014255e9bc QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 592
33 QtWidgets 0x000000014255e9bc QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 592
34 QtWidgets 0x000000014255e9bc QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 592
35 QtWidgets 0x000000014255753c QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*) + 3568
36 QtWidgets 0x0000000142574d48 QWidgetRepaintManager::paintAndFlush() + 3904
37 QtWidgets 0x0000000142574fcc QWidgetRepaintManager::sync() + 252
38 QtWidgets 0x000000014256464c QWidget::event(QEvent*) + 1316
39 QtWidgets 0x0000000142680620 QMainWindow::event(QEvent*) + 248
40 QtWidgets.abi3.so 0x0000000141f972c0 sipQMainWindow::event(QEvent*) + 224
41 QtWidgets 0x000000014251a710 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 272
42 QtWidgets 0x000000014251c1ec QApplication::notify(QObject*, QEvent*) + 3396
43 QtWidgets.abi3.so 0x000000014204c6b8 sipQApplication::notify(QObject*, QEvent*) + 248
44 QtCore 0x00000001203dce9c QCoreApplication::notifyInternal2(QObject*, QEvent*) + 292
45 QtWidgets 0x0000000142571a3c QWidgetRepaintManager::sendUpdateRequest(QWidget*, QWidgetRepaintManager::UpdateTime) + 604
46 QtWidgets 0x000000014257177c void QWidgetRepaintManager::markDirty(QRect const&, QWidget*, QWidgetRepaintManager::UpdateTime, QWidgetRepaintManager::BufferState) + 1748
47 QtWidgets 0x000000014257b018 0x142510000 + 438296
48 QtCore 0x0000000120426718 0x120374000 + 730904
49 QtGui 0x0000000142b8a4a4 QWindowPrivate::emitScreenChangedRecursion(QScreen*) + 80
50 QtGui 0x0000000142b80028 QScreen::~QScreen() + 700
51 QtGui 0x0000000142b80090 QScreen::~QScreen() + 12
52 QtGui 0x0000000142b9495c QWindowSystemInterface::handleScreenRemoved(QPlatformScreen*) + 36
53 libqcocoa.dylib 0x000000014e60bca8 0x14e5dc000 + 195752
54 libqcocoa.dylib 0x000000014e60a4f8 0x14e5dc000 + 189688
55 libqcocoa.dylib 0x000000014e60f158 0x14e5dc000 + 209240
56 com.apple.SkyLight 0x000000018a1b5f74 displayConfigFinalizedProc + 276
57 com.apple.SkyLight 0x000000018a1aca38 CGSPostLocalNotification + 268
58 com.apple.SkyLight 0x000000018a1ac5ac (anonymous namespace)::notify_datagram_handler(unsigned int, CGSDatagramType, void*, unsigned long, void*) + 116
59 com.apple.SkyLight 0x000000018a4521d4 CGSDatagramReadStream::dispatchMainQueueDatagrams() + 228
60 com.apple.SkyLight 0x000000018a4520d0 invocation function for block in CGSDatagramReadStream::mainQueueWakeup() + 28
61 libdispatch.dylib 0x0000000185726128 _dispatch_call_block_and_release + 32
62 libdispatch.dylib 0x0000000185727ec0 _dispatch_client_callout + 20
63 libdispatch.dylib 0x0000000185736314 _dispatch_main_queue_callback_4CF + 884
64 com.apple.CoreFoundation 0x0000000185a16cd8 __CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__ + 16
65 com.apple.CoreFoundation 0x00000001859d56ec __CFRunLoopRun + 2524
66 com.apple.CoreFoundation 0x00000001859d4598 CFRunLoopRunSpecific + 600
67 com.apple.HIToolbox 0x000000018d8f9280 RunCurrentEventLoopInMode + 292
68 com.apple.HIToolbox 0x000000018d8f8ff4 ReceiveNextEventCommon + 552
69 com.apple.HIToolbox 0x000000018d8f8db4 _BlockUntilNextEventMatchingListInModeWithFilter + 72
70 com.apple.AppKit 0x00000001881c5660 _DPSNextEvent + 836
71 com.apple.AppKit 0x00000001881c4000 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1292
72 com.apple.AppKit 0x00000001881b5e4c -[NSApplication run] + 596
73 libqcocoa.dylib 0x000000014e5f1010 0x14e5dc000 + 86032
74 QtCore 0x00000001203e62c0 QEventLoop::exec(QFlags) + 532
75 QtCore 0x00000001203dd538 QCoreApplication::exec() + 128
76 QtWidgets.abi3.so 0x0000000142151eac meth_QApplication_exec(_object*, _object*) + 96
77 org.python.python 0x0000000100c1f1dc cfunction_call + 172
78 org.python.python 0x0000000100bdc870 _PyObject_MakeTpCall + 360
79 org.python.python 0x0000000100cb2bc8 call_function + 512
80 org.python.python 0x0000000100cb0208 _PyEval_EvalFrameDefault + 23108
81 org.python.python 0x0000000100bdcffc function_code_fastcall + 112
82 org.python.python 0x0000000100bdef60 method_vectorcall + 168
83 org.python.python 0x0000000100cb2b68 call_function + 416
84 org.python.python 0x0000000100cb0208 _PyEval_EvalFrameDefault + 23108
85 org.python.python 0x0000000100cb3a90 _PyEval_EvalCode + 2988
86 org.python.python 0x0000000100bdcf80 _PyFunction_Vectorcall + 256
87 org.python.python 0x0000000100cb2b68 call_function + 416
88 org.python.python 0x0000000100cb0284 _PyEval_EvalFrameDefault + 23232
89 org.python.python 0x0000000100cb3a90 _PyEval_EvalCode + 2988
90 org.python.python 0x0000000100caa6fc PyEval_EvalCode + 80
91 org.python.python 0x0000000100ca74a4 builtin_exec + 672
92 org.python.python 0x0000000100c1e98c cfunction_vectorcall_FASTCALL + 232
93 org.python.python 0x0000000100cb2b68 call_function + 416
94 org.python.python 0x0000000100cb0284 _PyEval_EvalFrameDefault + 23232
95 org.python.python 0x0000000100cb3a90 _PyEval_EvalCode + 2988
96 org.python.python 0x0000000100bdcf80 _PyFunction_Vectorcall + 256
97 org.python.python 0x0000000100cb2b68 call_function + 416
98 org.python.python 0x0000000100cb0284 _PyEval_EvalFrameDefault + 23232
99 org.python.python 0x0000000100cb3a90 _PyEval_EvalCode + 2988
100 org.python.python 0x0000000100bdcf80 _PyFunction_Vectorcall + 256
101 org.python.python 0x0000000100d0dea4 pymain_run_module + 200
102 org.python.python 0x0000000100d0d4e8 Py_RunMain + 764
103 org.python.python 0x0000000100d0dd54 pymain_main + 340
104 org.python.python 0x0000000100d0dbf4 Py_Main + 36
105 edu.ucsf.cgl.ChimeraX 0x00000001008b7d54 main + 128
106 libdyld.dylib 0x00000001858f5430 start + 4
Thread 1:
0 libsystem_kernel.dylib 0x00000001858a0548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x00000001858d7dac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000101ac1b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
4 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 2:
0 libsystem_kernel.dylib 0x00000001858a0548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x00000001858d7dac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000101ac1b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
4 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 3:
0 libsystem_kernel.dylib 0x00000001858a0548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x00000001858d7dac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000101ac1b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
4 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 4:
0 libsystem_kernel.dylib 0x00000001858a0548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x00000001858d7dac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000101ac1b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
4 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 5:
0 libsystem_kernel.dylib 0x00000001858a0548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x00000001858d7dac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000101ac1b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
4 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 6:
0 libsystem_kernel.dylib 0x00000001858a0548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x00000001858d7dac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000101ac1b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
4 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 7:
0 libsystem_kernel.dylib 0x00000001858a0548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x00000001858d7dac _pthread_cond_wait + 1248
2 libopenblas64_.0.dylib 0x0000000101ac1b60 blas_thread_server + 360
3 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
4 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 8:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00000001858a7ee8 kevent64 + 8
1 QtWebEngineCore 0x0000000146fbdb50 0x143478000 + 62151504
2 QtWebEngineCore 0x0000000146fbd9f0 0x143478000 + 62151152
3 QtWebEngineCore 0x0000000146f659ec 0x143478000 + 61790700
4 QtWebEngineCore 0x0000000146f27490 0x143478000 + 61535376
5 QtWebEngineCore 0x0000000146f88514 0x143478000 + 61932820
6 QtWebEngineCore 0x0000000146f70778 0x143478000 + 61835128
7 QtWebEngineCore 0x0000000146f8868c 0x143478000 + 61933196
8 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
9 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
10 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 9:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00000001858a7ee8 kevent64 + 8
1 QtWebEngineCore 0x0000000146fbdb50 0x143478000 + 62151504
2 QtWebEngineCore 0x0000000146fbd9f0 0x143478000 + 62151152
3 QtWebEngineCore 0x0000000146f659ec 0x143478000 + 61790700
4 QtWebEngineCore 0x0000000146f27490 0x143478000 + 61535376
5 QtWebEngineCore 0x0000000146f88514 0x143478000 + 61932820
6 QtWebEngineCore 0x0000000144c84000 0x143478000 + 25214976
7 QtWebEngineCore 0x0000000146f8868c 0x143478000 + 61933196
8 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
9 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
10 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 10:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000018589cdd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018589d184 mach_msg + 76
2 QtWebEngineCore 0x0000000146fb786c 0x143478000 + 62126188
3 QtWebEngineCore 0x0000000146fb7658 0x143478000 + 62125656
4 QtWebEngineCore 0x0000000146ef81d4 0x143478000 + 61342164
5 QtWebEngineCore 0x0000000146f659ec 0x143478000 + 61790700
6 QtWebEngineCore 0x0000000146f27490 0x143478000 + 61535376
7 QtWebEngineCore 0x0000000146f88514 0x143478000 + 61932820
8 QtWebEngineCore 0x0000000146f8868c 0x143478000 + 61933196
9 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
10 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
11 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 11:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x000000018589cdd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018589d184 mach_msg + 76
2 QtWebEngineCore 0x0000000146fb786c 0x143478000 + 62126188
3 QtWebEngineCore 0x0000000146fb7658 0x143478000 + 62125656
4 QtWebEngineCore 0x0000000146ef81d4 0x143478000 + 61342164
5 QtWebEngineCore 0x0000000146f659ec 0x143478000 + 61790700
6 QtWebEngineCore 0x0000000146f27490 0x143478000 + 61535376
7 QtWebEngineCore 0x0000000146f88514 0x143478000 + 61932820
8 QtWebEngineCore 0x0000000146f8868c 0x143478000 + 61933196
9 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
10 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
11 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 12:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00000001858a7ee8 kevent64 + 8
1 QtWebEngineCore 0x0000000146fbdb50 0x143478000 + 62151504
2 QtWebEngineCore 0x0000000146fbd9f0 0x143478000 + 62151152
3 QtWebEngineCore 0x0000000146f659ec 0x143478000 + 61790700
4 QtWebEngineCore 0x0000000146f27490 0x143478000 + 61535376
5 QtWebEngineCore 0x0000000146f88514 0x143478000 + 61932820
6 QtWebEngineCore 0x00000001495defd4 0x143478000 + 102133716
7 QtWebEngineCore 0x0000000146f8868c 0x143478000 + 61933196
8 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
9 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
10 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 13:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00000001858a0548 __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x00000001858d7dac _pthread_cond_wait + 1248
2 QtWebEngineCore 0x0000000146fb0344 0x143478000 + 62096196
3 QtWebEngineCore 0x0000000148cff6a8 0x143478000 + 92829352
4 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
5 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
6 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 14:: ThreadPoolSingleThreadSharedForeground0
0 libsystem_kernel.dylib 0x000000018589cdd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018589d184 mach_msg + 76
2 QtWebEngineCore 0x0000000146fb786c 0x143478000 + 62126188
3 QtWebEngineCore 0x0000000146f7c2ec 0x143478000 + 61883116
4 QtWebEngineCore 0x0000000146f7cdf8 0x143478000 + 61885944
5 QtWebEngineCore 0x0000000146f7c9bc 0x143478000 + 61884860
6 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
7 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
8 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 15:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000018589cdd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018589d184 mach_msg + 76
2 QtWebEngineCore 0x0000000146fb786c 0x143478000 + 62126188
3 QtWebEngineCore 0x0000000146fb7658 0x143478000 + 62125656
4 QtWebEngineCore 0x0000000146ef81d4 0x143478000 + 61342164
5 QtWebEngineCore 0x0000000146f659ec 0x143478000 + 61790700
6 QtWebEngineCore 0x0000000146f27490 0x143478000 + 61535376
7 QtWebEngineCore 0x0000000146f88514 0x143478000 + 61932820
8 QtWebEngineCore 0x0000000146f8868c 0x143478000 + 61933196
9 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
10 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
11 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 16:: VizCompositorThread
0 libsystem_kernel.dylib 0x000000018589cdd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018589d184 mach_msg + 76
2 QtWebEngineCore 0x0000000146fb786c 0x143478000 + 62126188
3 QtWebEngineCore 0x0000000146fb7658 0x143478000 + 62125656
4 QtWebEngineCore 0x0000000146ef81d4 0x143478000 + 61342164
5 QtWebEngineCore 0x0000000146f659ec 0x143478000 + 61790700
6 QtWebEngineCore 0x0000000146f27490 0x143478000 + 61535376
7 QtWebEngineCore 0x0000000146f88514 0x143478000 + 61932820
8 QtWebEngineCore 0x0000000146f8868c 0x143478000 + 61933196
9 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
10 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
11 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 17:: NetworkService
0 libsystem_kernel.dylib 0x00000001858a7ee8 kevent64 + 8
1 QtWebEngineCore 0x0000000146fbdb50 0x143478000 + 62151504
2 QtWebEngineCore 0x0000000146fbd9f0 0x143478000 + 62151152
3 QtWebEngineCore 0x0000000146f659ec 0x143478000 + 61790700
4 QtWebEngineCore 0x0000000146f27490 0x143478000 + 61535376
5 QtWebEngineCore 0x0000000146f88514 0x143478000 + 61932820
6 QtWebEngineCore 0x0000000146f8868c 0x143478000 + 61933196
7 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
8 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
9 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 18:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000018589cdd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018589d184 mach_msg + 76
2 QtWebEngineCore 0x0000000146fb786c 0x143478000 + 62126188
3 QtWebEngineCore 0x0000000146fb7658 0x143478000 + 62125656
4 QtWebEngineCore 0x0000000146ef81d4 0x143478000 + 61342164
5 QtWebEngineCore 0x0000000146f659ec 0x143478000 + 61790700
6 QtWebEngineCore 0x0000000146f27490 0x143478000 + 61535376
7 QtWebEngineCore 0x0000000146f88514 0x143478000 + 61932820
8 QtWebEngineCore 0x0000000146f8868c 0x143478000 + 61933196
9 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
10 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
11 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 19:: ThreadPoolSingleThreadForegroundBlocking1
0 libsystem_kernel.dylib 0x000000018589cdd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018589d184 mach_msg + 76
2 QtWebEngineCore 0x0000000146fb786c 0x143478000 + 62126188
3 QtWebEngineCore 0x0000000146f7c2ec 0x143478000 + 61883116
4 QtWebEngineCore 0x0000000146f7cdf8 0x143478000 + 61885944
5 QtWebEngineCore 0x0000000146f7c9e8 0x143478000 + 61884904
6 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
7 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
8 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 20:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x000000018589cdd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018589d184 mach_msg + 76
2 QtWebEngineCore 0x0000000146fb786c 0x143478000 + 62126188
3 QtWebEngineCore 0x0000000146fb7658 0x143478000 + 62125656
4 QtWebEngineCore 0x0000000146ef81d4 0x143478000 + 61342164
5 QtWebEngineCore 0x0000000146f659ec 0x143478000 + 61790700
6 QtWebEngineCore 0x0000000146f27490 0x143478000 + 61535376
7 QtWebEngineCore 0x0000000146f88514 0x143478000 + 61932820
8 QtWebEngineCore 0x0000000146f8868c 0x143478000 + 61933196
9 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
10 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
11 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 21:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x000000018589cdd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018589d184 mach_msg + 76
2 QtWebEngineCore 0x0000000146fb786c 0x143478000 + 62126188
3 QtWebEngineCore 0x0000000146f7c2ec 0x143478000 + 61883116
4 QtWebEngineCore 0x0000000146f7cdf8 0x143478000 + 61885944
5 QtWebEngineCore 0x0000000146f7c90c 0x143478000 + 61884684
6 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
7 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
8 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 22:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x000000018589cdd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018589d184 mach_msg + 76
2 com.apple.CoreFoundation 0x00000001859d6d00 __CFRunLoopServiceMachPort + 372
3 com.apple.CoreFoundation 0x00000001859d51cc __CFRunLoopRun + 1212
4 com.apple.CoreFoundation 0x00000001859d4598 CFRunLoopRunSpecific + 600
5 com.apple.AppKit 0x0000000188344334 _NSEventThread + 196
6 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
7 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 23:: MemoryInfra
0 libsystem_kernel.dylib 0x000000018589cdd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018589d184 mach_msg + 76
2 QtWebEngineCore 0x0000000146fb786c 0x143478000 + 62126188
3 QtWebEngineCore 0x0000000146fb7658 0x143478000 + 62125656
4 QtWebEngineCore 0x0000000146ef81d4 0x143478000 + 61342164
5 QtWebEngineCore 0x0000000146f659ec 0x143478000 + 61790700
6 QtWebEngineCore 0x0000000146f27490 0x143478000 + 61535376
7 QtWebEngineCore 0x0000000146f88514 0x143478000 + 61932820
8 QtWebEngineCore 0x0000000146f8868c 0x143478000 + 61933196
9 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
10 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
11 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 24:: ThreadPoolSingleThreadSharedBackgroundBlocking2
0 libsystem_kernel.dylib 0x000000018589cdd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018589d184 mach_msg + 76
2 QtWebEngineCore 0x0000000146fb786c 0x143478000 + 62126188
3 QtWebEngineCore 0x0000000146f7c2ec 0x143478000 + 61883116
4 QtWebEngineCore 0x0000000146f7cb04 0x143478000 + 61885188
5 QtWebEngineCore 0x0000000146f7c938 0x143478000 + 61884728
6 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
7 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
8 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 25:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x000000018589cdd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018589d184 mach_msg + 76
2 QtWebEngineCore 0x0000000146fb786c 0x143478000 + 62126188
3 QtWebEngineCore 0x0000000146f7c2ec 0x143478000 + 61883116
4 QtWebEngineCore 0x0000000146f7cdf8 0x143478000 + 61885944
5 QtWebEngineCore 0x0000000146f7c990 0x143478000 + 61884816
6 QtWebEngineCore 0x0000000146fb17a8 0x143478000 + 62101416
7 libsystem_pthread.dylib 0x00000001858d7878 _pthread_start + 320
8 libsystem_pthread.dylib 0x00000001858d25e0 thread_start + 8
Thread 26:
0 libsystem_pthread.dylib 0x00000001858d25cc start_wqthread + 0
Thread 27:
0 libsystem_pthread.dylib 0x00000001858d25cc start_wqthread + 0
Thread 28:: Dispatch queue: com.apple.opengl.cvmDoWork
0 libsystem_kernel.dylib 0x000000018589cdd4 mach_msg_trap + 8
1 libsystem_kernel.dylib 0x000000018589d184 mach_msg + 76
2 libdispatch.dylib 0x0000000185741ba8 _dispatch_mach_send_and_wait_for_reply + 520
3 libdispatch.dylib 0x0000000185741f74 dispatch_mach_send_with_result_and_wait_for_reply + 56
4 libxpc.dylib 0x000000018563f8bc xpc_connection_send_message_with_reply_sync + 264
5 libCoreVMClient.dylib 0x00000001c7992e10 cvms_element_build_and_get_internal + 256
6 libCVMSPluginSupport.dylib 0x00000001c79a8d40 cvm_deferred_build_modular(void*) + 416
7 libdispatch.dylib 0x0000000185727ec0 _dispatch_client_callout + 20
8 libdispatch.dylib 0x000000018572f6a8 _dispatch_lane_serial_drain + 620
9 libdispatch.dylib 0x00000001857302a4 _dispatch_lane_invoke + 404
10 libdispatch.dylib 0x000000018573ab74 _dispatch_workloop_worker_thread + 764
11 libsystem_pthread.dylib 0x00000001858d389c _pthread_wqthread + 276
12 libsystem_pthread.dylib 0x00000001858d25d4 start_wqthread + 8
Thread 29:
0 libsystem_pthread.dylib 0x00000001858d25cc start_wqthread + 0
Thread 30:
0 libsystem_pthread.dylib 0x00000001858d25cc start_wqthread + 0
Thread 31:
0 libsystem_pthread.dylib 0x00000001858d25cc start_wqthread + 0
Thread 32:
0 libsystem_pthread.dylib 0x00000001858d25cc start_wqthread + 0
Thread 33:
0 libsystem_pthread.dylib 0x00000001858d25cc start_wqthread + 0
Thread 34:
0 libsystem_pthread.dylib 0x00000001858d25cc start_wqthread + 0
Thread 35:
0 libsystem_pthread.dylib 0x00000001858d25cc start_wqthread + 0
Thread 36:
0 libsystem_pthread.dylib 0x00000001858d25cc start_wqthread + 0
Thread 0 crashed with ARM Thread State (64-bit):
x0: 0x0000000000000000 x1: 0x0000000000000000 x2: 0x0000000000000001 x3: 0x000000018591fead
x4: 0x000000012809fc18 x5: 0xcb13930bc7ba01e4 x6: 0x0000000000000000 x7: 0x000000016f5440f8
x8: 0x09a982340bcd0122 x9: 0x09a982350b79bc62 x10: 0x0000000000001bba x11: 0x00000001fc82bb5e
x12: 0x00000001fc82bb5e x13: 0x0000000000000004 x14: 0x0000000000000881 x15: 0x000000008000001f
x16: 0x0000000000000148 x17: 0x00000001f435ae90 x18: 0x000000015073e83c x19: 0x000000000000000b
x20: 0x0000000100b4bd40 x21: 0x0000000000000103 x22: 0x0000000100b4be20 x23: 0x000000014e473040
x24: 0x0000000000000001 x25: 0x0000000000008001 x26: 0x0000000000008000 x27: 0x00000001f0d29848
x28: 0x0000000000000000 fp: 0x000000012809fb50 lr: 0x00000001858d743c
sp: 0x000000012809fb30 pc: 0x00000001858a4e68 cpsr: 0x40000000
far: 0x0000000100e6b277 esr: 0x56000080
Binary Images:
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0x1a10b3000 - 0x1a10b6fff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x1a11b7000 - 0x1a11b7fff com.apple.avfoundation (2.0 - 2020.10) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x1a137d000 - 0x1a1399fff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x1a14e0000 - 0x1a1538fff com.apple.AccessibilitySharedSupport (1.0 - 1) /System/Library/PrivateFrameworks/AccessibilitySharedSupport.framework/Versions/A/AccessibilitySharedSupport
0x1a1539000 - 0x1a1558fff com.apple.sidecar-core (1.0 - 231) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x1a1559000 - 0x1a1560fff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x1a1997000 - 0x1a199cfff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x1a1b10000 - 0x1a1b2bfff com.apple.SafariServices.framework (16611 - 16611.3.10.1.6) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x1a1cea000 - 0x1a1cf5fff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x1a1d0a000 - 0x1a1d1cfff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x1a1d3a000 - 0x1a1e6efff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x1a1e6f000 - 0x1a2075fff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x1a2076000 - 0x1a2180fff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x1a2181000 - 0x1a2192fff com.apple.sidecar-ui (1.0 - 231) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x1a27e6000 - 0x1a283ffff com.apple.ImageCaptureCore (1711.5.2 - 1711.5.2) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x1a2840000 - 0x1a2865fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x1a2a3c000 - 0x1a2ab2fff com.apple.Safari.Core (16611 - 16611.3.10.1.6) /System/Library/PrivateFrameworks/SafariCore.framework/Versions/A/SafariCore
0x1a2ab3000 - 0x1a2c25fff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x1a2c26000 - 0x1a2eeafff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x1a2f3e000 - 0x1a305afff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x1a305b000 - 0x1a3513fff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x1a3514000 - 0x1a35f4fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x1a4351000 - 0x1a43d3fff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x1a53fe000 - 0x1a5401fff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x1a56fd000 - 0x1a5716fff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x1a6dcf000 - 0x1a79bafff libfaceCore.dylib (4.3.1) /System/Library/Frameworks/Vision.framework/libfaceCore.dylib
0x1a79bb000 - 0x1a7ab6fff com.apple.TextRecognition (1.0 - 157) /System/Library/PrivateFrameworks/TextRecognition.framework/Versions/A/TextRecognition
0x1a7ab7000 - 0x1a7acefff com.apple.Futhark (1.0 - 1) /System/Library/PrivateFrameworks/Futhark.framework/Versions/A/Futhark
0x1a7acf000 - 0x1a7b2ffff com.apple.DifferentialPrivacy (1.0 - 1) /System/Library/PrivateFrameworks/DifferentialPrivacy.framework/Versions/A/DifferentialPrivacy
0x1a7b30000 - 0x1a7b4bfff com.apple.SafariFoundation (16611 - 16611.3.10.1.6) /System/Library/PrivateFrameworks/SafariFoundation.framework/Versions/A/SafariFoundation
0x1a7b4c000 - 0x1a7b52fff com.apple.SafariPlatformSupport.framework (16611 - ???) /System/Library/PrivateFrameworks/SafariPlatformSupport.framework/Versions/A/SafariPlatformSupport
0x1a7b53000 - 0x1a7d72fff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x1a861b000 - 0x1a861ffff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x1a9f3f000 - 0x1a9f42fff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x1abbcf000 - 0x1abc0afff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x1ac454000 - 0x1ac46ffff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x1b549a000 - 0x1b54c7fff com.apple.HelpData (2.3 - 201) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x1b54c8000 - 0x1b54e2fff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x1b54e3000 - 0x1b5581fff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x1b577f000 - 0x1b5782fff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x1b7ca4000 - 0x1b7cdefff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x1b9324000 - 0x1b9327fff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x1c5738000 - 0x1c573cfff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x1c798a000 - 0x1c7990fff libCoreFSCache.dylib (200.10) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x1c7991000 - 0x1c7996fff libCoreVMClient.dylib (200.10) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x1c7997000 - 0x1c79a6fff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x1c79a7000 - 0x1c79a9fff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x1c79aa000 - 0x1c79b2fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x1c79b3000 - 0x1c79ebfff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x1c79ec000 - 0x1c7a24fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x1c7a25000 - 0x1c7b91fff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x1c7b92000 - 0x1c7b9cfff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x1c7b9d000 - 0x1c7d07fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x1c7d08000 - 0x1c7d2cfff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x1c7d2d000 - 0x1c7d8cfff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x1c880b000 - 0x1c8812fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x1c8813000 - 0x1c88f9fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x1cadd7000 - 0x1cade2fff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x1d0fe2000 - 0x1d0fedfff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x1d1207000 - 0x1d1220fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x1d8dfc000 - 0x1d8e03fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.1G resident=0K(0%) swapped_out_or_unallocated=1.1G(100%)
Writable regions: Total=3.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=3.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 768K 6
Activity Tracing 256K 1
CG backing stores 12.4M 9
CG image 1040K 54
CoreAnimation 1728K 108
CoreGraphics 240K 15
CoreServices 624K 2
CoreUI image data 2016K 30
Foundation 48K 2
Kernel Alloc Once 32K 1
MALLOC 1.9G 722
MALLOC guard page 192K 10
MALLOC_MEDIUM (reserved) 520.0M 8 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 128.0M 1 reserved VM address space (unallocated)
Mach message 64K 3
OpenGL GLSL 384K 4
STACK GUARD 576K 36
Stack 154.3M 37
Stack Guard 56.0M 1
VM_ALLOCATE 294.2M 499
VM_ALLOCATE (reserved) 160.0M 2 reserved VM address space (unallocated)
__AUTH 1074K 275
__AUTH_CONST 15.8M 467
__DATA 18.6M 608
__DATA_CONST 26.0M 611
__DATA_DIRTY 1833K 222
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 518.9M 153
__OBJC_CONST 3414K 264
__OBJC_RO 75.1M 1
__OBJC_RW 2576K 1
__TEXT 587.2M 632
__UNICODE 588K 1
mapped file 308.5M 67
shared memory 3184K 25
=========== ======= =======
TOTAL 4.7G 4880
TOTAL, minus reserved VM space 3.9G 4880
===== Log before crash start =====
UCSF ChimeraX version: 1.6rc202304050652 (2023-04-05)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/for
> merge/4.28A map.mrc"
Opened 4.28A map.mrc as #1, grid size 440,440,440, pixel 0.885, shown at level
0.0208, step 2, values float32
> open "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/for
> merge/HDAC1 to 4.28A map.pdb"
Chain information for HDAC1 to 4.28A map.pdb #2
---
Chain | Description
C | No description available
> open "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/for
> merge/2BTB-1kelch to 4.28A map.pdb" "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/for
> merge/kelch to 4.28A map.pdb"
Chain information for 2BTB-1kelch to 4.28A map.pdb #3
---
Chain | Description
A | No description available
B | No description available
Chain information for kelch to 4.28A map.pdb #4
---
Chain | Description
A | No description available
> volume #1 step 1
> volume #1 level 0.1803
> select add #3
5986 atoms, 6113 bonds, 753 residues, 1 model selected
> select add #4
8174 atoms, 8351 bonds, 1036 residues, 2 models selected
> ui mousemode right "translate selected models"
> view matrix models
> #3,1,0,0,104.31,0,1,0,482.05,0,0,1,-126.35,#4,1,0,0,104.31,0,1,0,482.05,0,0,1,-126.35
> select subtract #4
5986 atoms, 6113 bonds, 753 residues, 1 model selected
> select subtract #3
Nothing selected
> ui mousemode right translate
> set bgColor white
> volume #1 color #b2b2b27a
> select add #3
5986 atoms, 6113 bonds, 753 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #3,1,0,0,152.46,0,1,0,589.68,0,0,1,-154.25
> view matrix models
> #3,-0.050422,0.95232,-0.3009,550.5,0.37876,-0.26054,-0.88806,425.45,-0.92412,-0.15875,-0.34757,173.43
> view matrix models
> #3,-0.058344,0.91372,-0.40213,565.86,0.37295,-0.3537,-0.85779,387.65,-0.92602,-0.20002,-0.32013,152.86
> view matrix models
> #3,-0.33418,0.93795,-0.092652,492.83,0.64,0.15365,-0.75285,517.18,-0.6919,-0.31088,-0.65164,204.83
> view matrix models
> #3,-0.33418,0.93795,-0.092652,487.29,0.64,0.15365,-0.75285,472.37,-0.6919,-0.31088,-0.65164,284.19
> view matrix models
> #3,-0.060938,0.91888,-0.3898,558.64,0.66498,-0.25387,-0.70239,328.66,-0.74437,-0.30201,-0.59557,272.42
> view matrix models
> #3,0.18911,0.95027,-0.24744,526.76,0.81809,-0.29184,-0.49554,258.39,-0.54311,-0.10871,-0.8326,395.88
> view matrix models
> #3,0.18911,0.95027,-0.24744,530.8,0.81809,-0.29184,-0.49554,261.19,-0.54311,-0.10871,-0.8326,408.15
> view matrix models
> #3,0.18911,0.95027,-0.24744,557.23,0.81809,-0.29184,-0.49554,240.17,-0.54311,-0.10871,-0.8326,407.71
> view matrix models
> #3,0.18911,0.95027,-0.24744,558.54,0.81809,-0.29184,-0.49554,243.54,-0.54311,-0.10871,-0.8326,408.16
> select subtract #3
Nothing selected
> ui tool show "Fit in Map"
> fitmap #3 inMap #1
Fit molecule 2BTB-1kelch to 4.28A map.pdb (#3) to map 4.28A map.mrc (#1) using
5986 atoms
average map value = 0.1864, steps = 232
shifted from previous position = 5.11
rotated from previous position = 32.4 degrees
atoms outside contour = 3126, contour level = 0.18029
Position of 2BTB-1kelch to 4.28A map.pdb (#3) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.09293491 0.96886019 0.22950606 439.06804949
0.81067152 0.20745794 -0.54751519 416.03678887
-0.57807853 0.13517075 -0.80470745 474.30825488
Axis 0.63847706 0.75528761 -0.14794480
Axis point 149.54840848 0.00000000 257.90242879
Rotation angle (degrees) 147.68181700
Shift along axis 524.39086938
> select add #4
2188 atoms, 2238 bonds, 283 residues, 1 model selected
> view matrix models #4,1,0,0,126.89,0,1,0,537.78,0,0,1,-147.46
> view matrix models
> #4,-0.8314,0.44624,0.33113,128.2,0.54992,0.74632,0.37495,357.34,-0.079812,0.49383,-0.86589,566.27
> view matrix models
> #4,-0.55126,0.69454,0.4623,169,0.79663,0.60285,0.044238,418.54,-0.24797,0.39267,-0.88562,538.44
> view matrix models
> #4,-0.65482,0.56365,0.5035,114.87,0.72179,0.66393,0.19548,389.88,-0.2241,0.49143,-0.84159,555.52
> view matrix models
> #4,-0.41771,0.73918,0.52832,165.01,0.83952,0.53637,-0.086694,438.83,-0.34746,0.40732,-0.84461,528.62
> view matrix models
> #4,-0.40344,0.5522,0.72959,47.54,0.80029,0.59951,-0.011214,434.4,-0.44359,0.57936,-0.68379,530.35
> view matrix models
> #4,-0.52287,0.76842,0.36897,220.22,0.83249,0.55337,0.027269,409.33,-0.18322,0.32142,-0.92904,531.16
> view matrix models
> #4,-0.52287,0.76842,0.36897,237.11,0.83249,0.55337,0.027269,390.32,-0.18322,0.32142,-0.92904,570.31
> view matrix models
> #4,-0.17721,0.65318,0.73618,97.258,0.69296,0.61397,-0.37795,528.91,-0.69886,0.44317,-0.56143,486.37
> view matrix models
> #4,-0.17721,0.65318,0.73618,101.5,0.69296,0.61397,-0.37795,509.31,-0.69886,0.44317,-0.56143,452.21
> view matrix models
> #4,-0.17721,0.65318,0.73618,114.06,0.69296,0.61397,-0.37795,525.39,-0.69886,0.44317,-0.56143,473.59
> view matrix models
> #4,-0.17721,0.65318,0.73618,132.51,0.69296,0.61397,-0.37795,504.3,-0.69886,0.44317,-0.56143,447.16
> view matrix models
> #4,-0.17721,0.65318,0.73618,133.1,0.69296,0.61397,-0.37795,501.39,-0.69886,0.44317,-0.56143,448.39
> view matrix models
> #4,-0.17721,0.65318,0.73618,149.98,0.69296,0.61397,-0.37795,498.93,-0.69886,0.44317,-0.56143,443.01
> view matrix models
> #4,-0.17721,0.65318,0.73618,144.95,0.69296,0.61397,-0.37795,509.61,-0.69886,0.44317,-0.56143,458.38
> view matrix models
> #4,-0.17721,0.65318,0.73618,156.02,0.69296,0.61397,-0.37795,509.18,-0.69886,0.44317,-0.56143,456.74
> view matrix models
> #4,-0.17721,0.65318,0.73618,155.17,0.69296,0.61397,-0.37795,512.42,-0.69886,0.44317,-0.56143,457.9
> view matrix models
> #4,-0.17721,0.65318,0.73618,157.42,0.69296,0.61397,-0.37795,516.16,-0.69886,0.44317,-0.56143,463.64
> view matrix models
> #4,-0.38571,0.78648,0.48237,270.92,0.86469,0.4905,-0.10831,400.16,-0.32178,0.37532,-0.86925,543.27
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 160
shifted from previous position = 3.31
rotated from previous position = 38.5 degrees
atoms outside contour = 1043, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05113900 0.99836726 -0.02544841 497.47396322
0.93087137 0.03842061 -0.36332126 338.74950366
-0.36175031 -0.04226908 -0.93131629 433.80815808
Axis 0.68335404 0.71581280 -0.14366383
Axis point 129.35574385 0.00000000 239.07767163
Rotation angle (degrees) 166.41373469
Shift along axis 520.10953278
> select subtract #4
Nothing selected
> select add #2
3144 atoms, 3225 bonds, 391 residues, 1 model selected
> view matrix models #2,1,0,0,13.1,0,1,0,51.419,0,0,1,9.643
> ui mousemode right translate
> ui mousemode right "translate selected models"
> view matrix models
> #2,-0.95876,0.025949,0.28302,393.49,0.27852,-0.11247,0.95382,18.058,0.056583,0.99332,0.10061,-19.928
> view matrix models
> #2,-0.95876,0.025949,0.28302,401.65,0.27852,-0.11247,0.95382,54.644,0.056583,0.99332,0.10061,16.387
> view matrix models
> #2,-0.88965,0.13974,0.43474,361.57,0.42205,-0.11193,0.89964,29.623,0.17437,0.98384,0.040604,-1.6988
> view matrix models
> #2,-0.88965,0.13974,0.43474,361.46,0.42205,-0.11193,0.89964,30.297,0.17437,0.98384,0.040604,-1.2433
> view matrix models
> #2,-0.68215,0.32973,0.65265,278.57,0.64187,-0.15751,0.75046,2.8316,0.35025,0.93084,-0.10419,-19.176
> view matrix models
> #2,-0.33752,0.13453,0.93165,200.58,0.87799,-0.31189,0.36312,5.1068,0.33943,0.94055,-0.012851,-26.368
> view matrix models
> #2,-0.3066,0.21971,0.92613,185.96,0.44759,-0.82543,0.344,149.07,0.84004,0.52,0.15474,-103.69
> view matrix models
> #2,-0.87848,-0.47778,-0.00018208,462.28,0.46607,-0.85704,0.21969,159.95,-0.10512,0.19291,0.97557,51.007
> view matrix models
> #2,-0.87848,-0.47778,-0.00018208,464.31,0.46607,-0.85704,0.21969,132.51,-0.10512,0.19291,0.97557,81.83
> view matrix models
> #2,-0.87848,-0.47778,-0.00018208,453.98,0.46607,-0.85704,0.21969,140.49,-0.10512,0.19291,0.97557,74.482
> view matrix models
> #2,-0.98671,-0.1167,0.11305,429.35,0.13991,-0.96404,0.22593,218.95,0.082616,0.23875,0.96756,31.334
> view matrix models
> #2,-0.98671,-0.1167,0.11305,422.53,0.13991,-0.96404,0.22593,221.19,0.082616,0.23875,0.96756,29.028
> view matrix models
> #2,-0.98671,-0.1167,0.11305,425.38,0.13991,-0.96404,0.22593,214.7,0.082616,0.23875,0.96756,30.582
> view matrix models
> #2,-0.98671,-0.1167,0.11305,421.5,0.13991,-0.96404,0.22593,216.87,0.082616,0.23875,0.96756,30.479
> view matrix models
> #2,-0.98671,-0.1167,0.11305,424.29,0.13991,-0.96404,0.22593,207.27,0.082616,0.23875,0.96756,30.988
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 36
shifted from previous position = 0.00596
rotated from previous position = 0.00958 degrees
atoms outside contour = 1045, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05110049 0.99837106 -0.02537630 497.45121857
0.93092461 0.03841698 -0.36318523 338.71003288
-0.36161875 -0.04218237 -0.93137132 433.84875400
Axis 0.68337032 0.71581325 -0.14358410
Axis point 129.35155964 0.00000000 239.07950095
Rotation angle (degrees) 166.41619140
Shift along axis 520.10274415
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 24
shifted from previous position = 0.00478
rotated from previous position = 0.0242 degrees
atoms outside contour = 1045, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05120927 0.99837575 -0.02496943 497.33031818
0.93090576 0.03866473 -0.36320726 338.78919686
-0.36165188 -0.04184376 -0.93137372 433.94915087
Axis 0.68331645 0.71588921 -0.14346171
Axis point 129.33426439 0.00000000 239.10011342
Rotation angle (degrees) 166.39954504
Shift along axis 520.11443216
> view matrix models
> #2,-0.98671,-0.1167,0.11305,413.84,0.13991,-0.96404,0.22593,210.35,0.082616,0.23875,0.96756,33.261
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 24
shifted from previous position = 0.00223
rotated from previous position = 0.00534 degrees
atoms outside contour = 1044, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05119427 0.99837801 -0.02490984 497.31521940
0.93093069 0.03867524 -0.36314222 338.77295034
-0.36158981 -0.04178014 -0.93140068 433.97688983
Axis 0.68332216 0.71589306 -0.14341532
Axis point 129.33348455 0.00000000 239.10282486
Rotation angle (degrees) 166.39972189
Shift along axis 520.11278033
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 28
shifted from previous position = 0.018
rotated from previous position = 0.046 degrees
atoms outside contour = 1044, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05101447 0.99836739 -0.02569194 497.54077759
0.93094524 0.03822399 -0.36315270 338.64652393
-0.36157776 -0.04244383 -0.93137535 433.77906935
Axis 0.68341320 0.71575448 -0.14367294
Axis point 129.36202942 0.00000000 239.06678576
Rotation angle (degrees) 166.42973874
Shift along axis 520.09138830
> view matrix models
> #2,-0.98553,-0.13766,0.098921,417.52,0.15701,-0.96126,0.22656,205.93,0.063901,0.23881,0.96896,37.728
> view matrix models
> #2,-0.8629,0.28934,0.41436,319.21,-0.21263,-0.95165,0.22172,282.63,0.45848,0.10321,0.88269,-22.917
> view matrix models
> #2,-0.88121,0.33634,0.33218,326.69,-0.28405,-0.93843,0.19664,299.78,0.37787,0.078921,0.92249,-4.7609
> view matrix models
> #2,-0.88121,0.33634,0.33218,324.7,-0.28405,-0.93843,0.19664,298.01,0.37787,0.078921,0.92249,-7.4566
> view matrix models
> #2,-0.88121,0.33634,0.33218,326.65,-0.28405,-0.93843,0.19664,297,0.37787,0.078921,0.92249,-11.027
> view matrix models
> #2,-0.88121,0.33634,0.33218,328.46,-0.28405,-0.93843,0.19664,297.98,0.37787,0.078921,0.92249,-2.4729
> view matrix models
> #2,-0.82081,0.45206,0.34915,302.49,-0.21167,-0.80847,0.54915,236.96,0.53053,0.37685,0.75929,-49.569
> view matrix models
> #2,-0.82081,0.45206,0.34915,299.57,-0.21167,-0.80847,0.54915,235.22,0.53053,0.37685,0.75929,-50.817
> view matrix models
> #2,-0.82081,0.45206,0.34915,300.81,-0.21167,-0.80847,0.54915,235.59,0.53053,0.37685,0.75929,-49.028
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 28
shifted from previous position = 0.0197
rotated from previous position = 0.0322 degrees
atoms outside contour = 1045, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05110647 0.99837671 -0.02514104 497.38720723
0.93095559 0.03851176 -0.36309577 338.71188965
-0.36153814 -0.04196173 -0.93141258 433.92318617
Axis 0.68336340 0.71584272 -0.14347009
Axis point 129.34473841 0.00000000 239.08912049
Rotation angle (degrees) 166.41039372
Shift along axis 520.10565481
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 28
shifted from previous position = 0.0301
rotated from previous position = 0.0435 degrees
atoms outside contour = 1044, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05099953 0.99836332 -0.02587898 497.59049627
0.93092277 0.03813930 -0.36321921 338.64283430
-0.36163773 -0.04261534 -0.93134423 433.72449245
Axis 0.68342257 0.71572782 -0.14376120
Axis point 129.36639562 0.00000000 239.06105335
Rotation angle (degrees) 166.43445569
Shift along axis 520.08791684
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 28
shifted from previous position = 0.021
rotated from previous position = 0.0245 degrees
atoms outside contour = 1045, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05109327 0.99836925 -0.02546205 497.47698247
0.93091273 0.03837764 -0.36321983 338.70805770
-0.36165034 -0.04226104 -0.93135548 433.82038348
Axis 0.68337461 0.71580073 -0.14362614
Axis point 129.35549006 0.00000000 239.07523498
Rotation angle (degrees) 166.41817875
Shift along axis 520.10266178
> view matrix models
> #2,-0.94012,0.16056,0.30066,359.9,-0.016799,-0.90285,0.42962,215.56,0.34044,0.39884,0.85149,-20.093
> view matrix models
> #2,-0.94,0.16122,0.30068,356.78,-0.016089,-0.90127,0.43295,212.16,0.34079,0.40214,0.84979,-24.274
> view matrix models
> #2,-0.99016,0.062734,-0.12511,416.74,-0.10327,-0.93081,0.3506,241.01,-0.09446,0.36007,0.92813,63.688
> view matrix models
> #2,-0.99016,0.062734,-0.12511,416.71,-0.10327,-0.93081,0.3506,242.17,-0.09446,0.36007,0.92813,67.595
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 24
shifted from previous position = 0.00504
rotated from previous position = 0.00765 degrees
atoms outside contour = 1044, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05110479 0.99837185 -0.02533680 497.44247337
0.93092599 0.03843555 -0.36317971 338.71267903
-0.36161456 -0.04214690 -0.93137455 433.85755683
Axis 0.68336763 0.71581888 -0.14356886
Axis point 129.35182199 0.00000000 239.07992115
Rotation angle (degrees) 166.41484583
Shift along axis 520.10458041
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 28
shifted from previous position = 0.0149
rotated from previous position = 0.0209 degrees
atoms outside contour = 1044, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05101633 0.99836733 -0.02569070 497.54082797
0.93094495 0.03822614 -0.36315321 338.64687207
-0.36157825 -0.04244337 -0.93137518 433.77857608
Axis 0.68341247 0.71575520 -0.14367283
Axis point 129.36231998 0.00000000 239.06645531
Rotation angle (degrees) 166.42968157
Shift along axis 520.09167060
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 28
shifted from previous position = 0.013
rotated from previous position = 0.0374 degrees
atoms outside contour = 1044, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05119278 0.99837214 -0.02514694 497.38287979
0.93081289 0.03857392 -0.36345482 338.83463806
-0.36189315 -0.04201336 -0.93127237 433.86573314
Axis 0.68331989 0.71585472 -0.14361737
Axis point 129.34247516 0.00000000 239.09390894
Rotation angle (degrees) 166.39625183
Shift along axis 520.11733574
> view matrix models
> #2,0.59608,0.31392,0.73902,-20.356,0.42571,-0.90395,0.040609,157.64,0.68078,0.2904,-0.67246,61.045
> view matrix models
> #2,0.59608,0.31392,0.73902,32.52,0.42571,-0.90395,0.040609,162.88,0.68078,0.2904,-0.67246,33.575
> view matrix models
> #2,-0.49223,0.866,0.088025,264.05,-0.35823,-0.10937,-0.9272,335.49,-0.79333,-0.48793,0.36406,324.73
> view matrix models
> #2,-0.4958,0.8675,-0.040407,276.54,-0.1613,-0.13771,-0.97725,301.87,-0.85333,-0.478,0.2082,350.7
> view matrix models
> #2,-0.4958,0.8675,-0.040407,225.22,-0.1613,-0.13771,-0.97725,320.78,-0.85333,-0.478,0.2082,353.45
> view matrix models
> #2,-0.61503,0.7816,0.10406,245.49,0.096733,0.20576,-0.97381,231.59,-0.78254,-0.58886,-0.20216,387.97
> view matrix models
> #2,-0.61503,0.7816,0.10406,252.5,0.096733,0.20576,-0.97381,207.47,-0.78254,-0.58886,-0.20216,399.3
> view matrix models
> #2,-0.6351,0.77099,0.047145,263.05,0.11918,0.15811,-0.9802,208.23,-0.76318,-0.6169,-0.19231,397.2
> view matrix models
> #2,0.3459,-0.34867,0.87108,95.687,0.6326,0.77231,0.05794,-57.768,-0.69295,0.531,0.48771,202.67
> view matrix models
> #2,0.43799,-0.19107,0.87844,59.722,0.44284,0.89623,-0.025861,-22.967,-0.78234,0.40033,0.47715,235.62
> view matrix models
> #2,0.43799,-0.19107,0.87844,57.759,0.44284,0.89623,-0.025861,-11.401,-0.78234,0.40033,0.47715,246.71
> view matrix models
> #2,0.43799,-0.19107,0.87844,45.848,0.44284,0.89623,-0.025861,-19,-0.78234,0.40033,0.47715,248.06
> view matrix models
> #2,0.43799,-0.19107,0.87844,85.804,0.44284,0.89623,-0.025861,-51.758,-0.78234,0.40033,0.47715,274.81
> vop flip #1
Opened 4.28A map.mrc z flip as #5, grid size 440,440,440, pixel 0.885, shown
at step 1, values float32
> view matrix models
> #2,0.43799,-0.19107,0.87844,88.092,0.44284,0.89623,-0.025861,-57.907,-0.78234,0.40033,0.47715,280.12
> select subtract #2
Nothing selected
> hide #!5 models
> show #!1 models
> select add #2
3144 atoms, 3225 bonds, 391 residues, 1 model selected
> view matrix models
> #2,0.32997,-0.20597,0.92125,108.21,0.72251,0.68318,-0.10604,-87.226,-0.60753,0.7006,0.37424,222.58
> view matrix models
> #2,-0.64233,0.14222,-0.75311,431.09,-0.71809,-0.4551,0.52652,271,-0.26786,0.87901,0.39445,131.58
> view matrix models
> #2,-0.90623,-0.41347,0.088319,464.81,0.1509,-0.12117,0.9811,13.321,-0.39495,0.90242,0.1722,176.34
> view matrix models
> #2,-0.915,0.21082,-0.34398,443.17,-0.39973,-0.35836,0.84368,165.24,0.054594,0.90947,0.41217,59.46
> view matrix models
> #2,-0.99368,0.067823,-0.089491,450.57,-0.10006,-0.17317,0.9798,71.169,0.050956,0.98255,0.17886,74.404
> view matrix models
> #2,-0.9462,0.26759,0.18196,395.16,0.10104,-0.28989,0.95171,43.635,0.30741,0.91889,0.24726,20.961
> view matrix models
> #2,-0.85636,0.20976,0.47185,355.41,-0.10064,-0.96406,0.2459,219.8,0.50647,0.16309,0.84669,0.74412
> view matrix models
> #2,-0.85629,0.20955,0.47208,355.4,-0.10093,-0.96427,0.24495,219.97,0.50654,0.1621,0.84684,0.81721
> view matrix models
> #2,-0.65268,0.57811,0.4897,273.71,-0.16137,-0.73759,0.65568,171.46,0.74025,0.34893,0.5747,-41.809
> view matrix models
> #2,-0.62319,0.50527,0.59695,265.02,-0.3945,-0.86215,0.3179,264.15,0.67528,-0.037379,0.73661,-3.9213
> view matrix models
> #2,-0.6293,0.53335,0.56526,266.38,-0.32295,-0.84103,0.43402,236.29,0.70688,0.09058,0.70151,-20.294
> view matrix models
> #2,-0.6293,0.53335,0.56526,250.63,-0.32295,-0.84103,0.43402,275.47,0.70688,0.09058,0.70151,-52.223
> view matrix models
> #2,-0.6293,0.53335,0.56526,231.45,-0.32295,-0.84103,0.43402,274.11,0.70688,0.09058,0.70151,-61.022
> view matrix models
> #2,-0.6293,0.53335,0.56526,230.53,-0.32295,-0.84103,0.43402,271.79,0.70688,0.09058,0.70151,-61.74
> view matrix models
> #2,-0.6293,0.53335,0.56526,232.99,-0.32295,-0.84103,0.43402,273.7,0.70688,0.09058,0.70151,-50.602
> view matrix models
> #2,-0.86393,0.47566,0.16546,324.94,-0.4161,-0.85926,0.29755,307.67,0.2837,0.18821,0.94026,5.7523
> view matrix models
> #2,-0.86393,0.47566,0.16546,323.9,-0.4161,-0.85926,0.29755,308.16,0.2837,0.18821,0.94026,2.7315
> view matrix models
> #2,-0.9136,0.38381,-0.13428,371.4,-0.40427,-0.89285,0.19847,318.29,-0.043716,0.23561,0.97086,63.481
> view matrix models
> #2,-0.9353,0.29724,-0.19201,390.1,-0.33443,-0.91984,0.20507,305.83,-0.11567,0.25601,0.95973,77.469
> view matrix models
> #2,-0.9353,0.29724,-0.19201,391.49,-0.33443,-0.91984,0.20507,303.64,-0.11567,0.25601,0.95973,79.52
> view matrix models
> #2,-0.9353,0.29724,-0.19201,390.54,-0.33443,-0.91984,0.20507,304.02,-0.11567,0.25601,0.95973,79.248
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 28
shifted from previous position = 0.0132
rotated from previous position = 0.0478 degrees
atoms outside contour = 1044, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05097558 0.99836475 -0.02587099 497.59454372
0.93096464 0.03812470 -0.36311340 338.60375246
-0.36153330 -0.04259489 -0.93138571 433.73626605
Axis 0.68343463 0.71572542 -0.14371579
Axis point 129.37047903 0.00000000 239.05586721
Rotation angle (degrees) 166.43838022
Shift along axis 520.08590576
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 44
shifted from previous position = 0.00668
rotated from previous position = 0.00595 degrees
atoms outside contour = 1044, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05099935 0.99836564 -0.02578970 497.56597506
0.93094033 0.03817368 -0.36317059 338.63884798
-0.36159255 -0.04253013 -0.93136567 433.75318368
Axis 0.68342134 0.71573886 -0.14371206
Axis point 129.36347848 0.00000000 239.06364641
Rotation angle (degrees) 166.43285309
Shift along axis 520.08862562
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 28
shifted from previous position = 0.0226
rotated from previous position = 0.0368 degrees
atoms outside contour = 1045, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05118358 0.99837176 -0.02518054 497.39469387
0.93088700 0.03856168 -0.36326629 338.77467782
-0.36170380 -0.04203351 -0.93134502 433.88241415
Axis 0.68333079 0.71585692 -0.14355453
Axis point 129.34441610 0.00000000 239.08866276
Rotation angle (degrees) 166.40547406
Shift along axis 520.11352219
> view matrix models
> #2,-0.9353,0.29724,-0.19201,390,-0.33443,-0.91984,0.20507,305.78,-0.11567,0.25601,0.95973,76.699
> view matrix models
> #2,-0.94874,0.31521,-0.023234,375.34,-0.25927,-0.7341,0.6276,232.01,0.18077,0.60145,0.77819,-3.5716
> view matrix models
> #2,-0.94874,0.31521,-0.023234,372.51,-0.25927,-0.7341,0.6276,235.75,0.18077,0.60145,0.77819,0.75191
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 24
shifted from previous position = 0.00209
rotated from previous position = 0.00544 degrees
atoms outside contour = 1046, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05114673 0.99837385 -0.02517276 497.39373824
0.93092011 0.03853383 -0.36318439 338.74326140
-0.36162380 -0.04200952 -0.93137717 433.89932106
Axis 0.68334676 0.71584905 -0.14351776
Axis point 129.34473797 0.00000000 239.08851020
Rotation angle (degrees) 166.40829549
Shift along axis 520.10918202
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 44
shifted from previous position = 0.00472
rotated from previous position = 0.0115 degrees
atoms outside contour = 1045, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05112337 0.99837020 -0.02536437 497.44838524
0.93090497 0.03844047 -0.36323306 338.73002270
-0.36166605 -0.04218151 -0.93135299 433.84265435
Axis 0.68335995 0.71581994 -0.14360009
Axis point 129.35165381 0.00000000 239.07998557
Rotation angle (degrees) 166.41388177
Shift along axis 520.10616697
> view matrix models
> #2,-0.94673,0.32184,0.011028,368.24,-0.24137,-0.73186,0.63727,230.89,0.21317,0.60066,0.77056,-5.2298
> view matrix models
> #2,-0.94673,0.32184,0.011028,370.67,-0.24137,-0.73186,0.63727,224.98,0.21317,0.60066,0.77056,-4.1925
> view matrix models
> #2,-0.94949,0.31011,0.047966,369.02,-0.20833,-0.73728,0.64266,218.13,0.23466,0.60021,0.76465,-8.0887
> view matrix models
> #2,-0.95022,0.30533,-0.062176,379.86,-0.27733,-0.73775,0.61548,235.11,0.14205,0.60208,0.7857,9.1194
> view matrix models
> #2,-0.93594,0.35191,0.013279,365.15,-0.31239,-0.84707,0.42999,270.75,0.16256,0.3983,0.90273,14.728
> view matrix models
> #2,-0.93594,0.35191,0.013279,364.44,-0.31239,-0.84707,0.42999,272.5,0.16256,0.3983,0.90273,12.823
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 24
shifted from previous position = 0.00321
rotated from previous position = 0.00698 degrees
atoms outside contour = 1045, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05113351 0.99837256 -0.02525066 497.41595022
0.93091782 0.03849284 -0.36319459 338.73412672
-0.36163155 -0.04207770 -0.93137108 433.87754776
Axis 0.68335381 0.71583640 -0.14354727
Axis point 129.34756066 0.00000000 239.08475480
Rotation angle (degrees) 166.41093913
Shift along axis 520.10736450
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 28
shifted from previous position = 0.0184
rotated from previous position = 0.0313 degrees
atoms outside contour = 1044, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05099018 0.99836644 -0.02577711 497.56513091
0.93094894 0.03817068 -0.36314882 338.63045563
-0.36157166 -0.04251420 -0.93137451 433.75948336
Axis 0.68342500 0.71573803 -0.14369877
Axis point 129.36498029 0.00000000 239.06334105
Rotation angle (degrees) 166.43317903
Shift along axis 520.08844083
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 40
shifted from previous position = 0.0124
rotated from previous position = 0.0275 degrees
atoms outside contour = 1046, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05114089 0.99836993 -0.02533956 497.43853387
0.93088662 0.03846377 -0.36327764 338.75149477
-0.36171082 -0.04216660 -0.93133628 433.84340922
Axis 0.68335123 0.71582625 -0.14361015
Axis point 129.34873914 0.00000000 239.08284799
Rotation angle (degrees) 166.41113934
Shift along axis 520.10812913
> view matrix models
> #2,-0.95265,0.30235,-0.032351,377.21,-0.28645,-0.85662,0.42912,268.13,0.10203,0.41807,0.90267,23.465
> view matrix models
> #2,-0.95415,0.2799,-0.10609,386.64,-0.28494,-0.74072,0.60839,239.4,0.091703,0.61072,0.78652,16.779
> view matrix models
> #2,-0.95415,0.2799,-0.10609,385.77,-0.28494,-0.74072,0.60839,243.55,0.091703,0.61072,0.78652,19.661
> view matrix models
> #2,-0.9624,0.17865,-0.20462,406.94,-0.2699,-0.54383,0.79461,203.11,0.030678,0.81996,0.57159,31.032
> view matrix models
> #2,-0.9845,0.17538,-0.0017405,393.08,-0.095219,-0.52614,0.84505,160.14,0.14729,0.83212,0.53469,8.8522
> view matrix models
> #2,-0.99426,0.08881,0.059683,398.24,-0.021686,-0.71345,0.70037,177.25,0.10478,0.69505,0.71128,15.317
> view matrix models
> #2,-0.99536,0.073223,0.062407,399.01,-0.010856,-0.72999,0.68337,174.52,0.095595,0.67952,0.7274,15.268
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 36
shifted from previous position = 0.00311
rotated from previous position = 0.0175 degrees
atoms outside contour = 1045, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05102986 0.99836920 -0.02559088 497.51781062
0.93094546 0.03827519 -0.36314676 338.65638282
-0.36157504 -0.04235504 -0.93138045 433.79935286
Axis 0.68340446 0.71576996 -0.14363740
Axis point 129.36248572 0.00000000 239.06753543
Rotation angle (degrees) 166.42598876
Shift along axis 520.09614790
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 40
shifted from previous position = 0.0122
rotated from previous position = 0.01 degrees
atoms outside contour = 1044, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05099467 0.99836659 -0.02576217 497.56182395
0.93094950 0.03818039 -0.36314637 338.63179378
-0.36156959 -0.04250181 -0.93137588 433.76176036
Axis 0.68342296 0.71574114 -0.14369303
Axis point 129.36511967 0.00000000 239.06298368
Rotation angle (degrees) 166.43270895
Shift along axis 520.08933543
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 28
shifted from previous position = 0.0201
rotated from previous position = 0.0363 degrees
atoms outside contour = 1045, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05111867 0.99837605 -0.02514228 497.38753540
0.93094586 0.03852161 -0.36311967 338.72145394
-0.36156146 -0.04196830 -0.93140323 433.91846292
Axis 0.68335818 0.71584561 -0.14348055
Axis point 129.34481391 0.00000000 239.08919253
Rotation angle (degrees) 166.40954061
Shift along axis 520.10724333
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 40
shifted from previous position = 0.0114
rotated from previous position = 0.0176 degrees
atoms outside contour = 1044, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05109780 0.99836977 -0.02543248 497.46641118
0.93091688 0.03839313 -0.36320755 338.71024334
-0.36163900 -0.04223464 -0.93136108 433.83149044
Axis 0.68337239 0.71580575 -0.14361163
Axis point 129.35286822 0.00000000 239.07760715
Rotation angle (degrees) 166.41752537
Shift along axis 520.10230620
> view matrix models
> #2,-0.99536,0.073223,0.062407,398.92,-0.010856,-0.72999,0.68337,175.61,0.095595,0.67952,0.7274,12.992
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 28
shifted from previous position = 0.0152
rotated from previous position = 0.0336 degrees
atoms outside contour = 1044, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05093880 0.99836340 -0.02599551 497.62972185
0.93094982 0.03804320 -0.36315995 338.59646787
-0.36157665 -0.04269945 -0.93136410 433.70318086
Axis 0.68345055 0.71569855 -0.14377387
Axis point 129.37414587 0.00000000 239.05325525
Rotation angle (degrees) 166.44120383
Shift along axis 520.08312525
> view matrix models
> #2,-0.99536,0.073223,0.062407,398.01,-0.010856,-0.72999,0.68337,174.2,0.095595,0.67952,0.7274,14.413
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 44
shifted from previous position = 0.0166
rotated from previous position = 0.0345 degrees
atoms outside contour = 1042, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05115338 0.99836545 -0.02549050 497.48671283
0.93084007 0.03841511 -0.36340203 338.77242114
-0.36182881 -0.04231682 -0.93128363 433.78631692
Axis 0.68334744 0.71580975 -0.14371042
Axis point 129.35737585 0.00000000 239.07766816
Rotation angle (degrees) 166.41217636
Shift along axis 520.11325695
> fitmap #4 inMap #1
Fit molecule kelch to 4.28A map.pdb (#4) to map 4.28A map.mrc (#1) using 2188
atoms
average map value = 0.1959, steps = 28
shifted from previous position = 0.0202
rotated from previous position = 0.0358 degrees
atoms outside contour = 1044, contour level = 0.18029
Position of kelch to 4.28A map.pdb (#4) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.05095083 0.99836155 -0.02604299 497.64026447
0.93093512 0.03803546 -0.36319843 338.60594004
-0.36161279 -0.04274960 -0.93134777 433.68543673
Axis 0.68344643 0.71569610 -0.14380563
Axis point 129.37403860 0.00000000 239.05223307
Rotation angle (degrees) 166.44162342
Shift along axis 520.08300643
> select subtract #2
Nothing selected
> save "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/for
> merge/test.mrc" models #1
> save "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/for
> merge/HDAC1 to test.pdb" models #2 relModel #1
> save "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/for
> merge/2BTB-1kelch to test.pdb" models #3 relModel #1
> save "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/for
> merge/kelch to test.pdb" models #4 relModel #1
> save "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/for
> merge/4.28A session.cxs" includeMaps true
> open "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/for
> merge/kelch to test.pdb"
Chain information for kelch to test.pdb #6
---
Chain | Description
A | No description available
> color #1 #ff7e79ff models
> color #1 #ff7e797c models
> color #1 #ff7e795b models
> color #1 #ff7e791d models
> color #1 #ff7e7925 models
> color #1 #fffc79ff models
> color #1 #fffc7942 models
> hide #6 models
> show #6 models
> hide #6 models
> show #6 models
> open "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/for
> merge/HDAC1 to test.pdb"
Chain information for HDAC1 to test.pdb #7
---
Chain | Description
C | No description available
> hide #7 models
> open "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/for
> merge/kelch to test.pdb"
Chain information for kelch to test.pdb #8
---
Chain | Description
A | No description available
> select add #8
2188 atoms, 2238 bonds, 283 residues, 1 model selected
> view matrix models #8,1,0,0,-33.753,0,1,0,-53.362,0,0,1,73.899
> view matrix models #8,1,0,0,-33.768,0,1,0,-53.388,0,0,1,73.931
> view matrix models
> #8,-0.45387,0.37361,0.80896,25.211,0.13763,0.92635,-0.35061,-4.1612,-0.88038,-0.047792,-0.47186,502.02
> view matrix models
> #8,-0.66895,-0.063072,0.74062,164.31,0.67004,0.38018,0.63758,-165.38,-0.32178,0.92276,-0.21206,159.18
> view matrix models
> #8,-0.69738,-0.081881,0.71201,178.31,0.66978,0.27909,0.68812,-153.9,-0.25506,0.95677,-0.13979,127.44
> view matrix models
> #8,-0.65944,-0.05576,0.74968,159.51,0.66828,0.41324,0.61857,-168.36,-0.34429,0.90891,-0.23525,170.15
> view matrix models
> #8,-0.68665,-0.075313,0.72307,173.09,0.67084,0.31763,0.67014,-158.68,-0.28014,0.94522,-0.16758,139.23
> view matrix models
> #8,-0.59853,0.0042365,0.80109,147.46,0.63309,0.61524,0.46976,-138.21,-0.49088,0.78833,-0.37092,201.46
> view matrix models
> #8,-0.72565,-0.096142,0.68131,211.93,0.66145,0.17525,0.72923,-100.56,-0.18951,0.97982,-0.063575,53.869
> view matrix models
> #8,-0.72565,-0.096142,0.68131,211.61,0.66145,0.17525,0.72923,-100.72,-0.18951,0.97982,-0.063575,54.602
> view matrix models
> #8,-0.72565,-0.096142,0.68131,209.78,0.66145,0.17525,0.72923,-105.2,-0.18951,0.97982,-0.063575,58.453
> view matrix models
> #8,0.59382,-0.71665,0.36577,140.23,0.79719,0.58558,-0.14689,-61.539,-0.10892,0.37882,0.91904,-6.1384
> view matrix models
> #8,0.34866,-0.82177,0.4507,192.53,0.81189,0.02456,-0.58329,122.61,0.46826,0.56929,0.67575,-110.45
> view matrix models
> #8,0.34866,-0.82177,0.4507,191.89,0.81189,0.02456,-0.58329,119.17,0.46826,0.56929,0.67575,-109.29
> view matrix models
> #8,0.34866,-0.82177,0.4507,182.94,0.81189,0.02456,-0.58329,74.321,0.46826,0.56929,0.67575,-92.782
> view matrix models
> #8,0.6077,-0.70527,0.36509,125.89,0.78117,0.61369,-0.11475,-117.95,-0.14312,0.35493,0.92387,21.87
> view matrix models
> #8,0.54923,-0.74855,0.3715,144.37,0.83567,0.49216,-0.24379,-81.746,-0.00034893,0.44435,0.89585,-17.897
> view matrix models
> #8,0.45899,-0.7948,0.39702,166.11,0.86223,0.29074,-0.41477,-17.162,0.21423,0.5327,0.81874,-62.466
> view matrix models
> #8,0.20246,-0.71627,-0.66781,381.94,0.69615,0.58489,-0.41628,-44.346,0.68876,-0.38061,0.61705,65.191
> view matrix models
> #8,0.24112,-0.69008,-0.68238,371.98,0.75937,0.572,-0.31013,-71.913,0.60434,-0.4434,0.66195,85.801
> view matrix models
> #8,0.078889,-0.82883,-0.55391,407.93,0.32675,0.54645,-0.77112,93.7,0.94181,-0.12015,0.31392,18.037
> view matrix models
> #8,0.15018,-0.75681,-0.63615,394.37,0.58096,0.58819,-0.5626,1.7969,0.79996,-0.28509,0.52801,40.636
> view matrix models
> #8,0.048682,-0.87673,-0.47852,410.15,0.11824,0.48078,-0.86883,162.72,0.99179,-0.014281,0.12707,19.748
> view matrix models
> #8,0.039426,-0.9056,-0.4223,407.96,-0.027999,0.42146,-0.90642,208.43,0.99883,0.04756,-0.0087392,29.493
> view matrix models
> #8,0.038475,-0.92331,-0.38212,404.75,-0.12855,0.37465,-0.91821,238.65,0.99096,0.08445,-0.10428,40.073
> view matrix models
> #8,-0.907,0.41846,-0.047455,257.18,0.32174,0.76122,0.56306,-177.88,0.27174,0.49542,-0.82505,217.22
> view matrix models
> #8,-0.80602,0.38553,0.4491,159.3,0.58919,0.59487,0.54679,-192.11,-0.056344,0.70534,-0.70663,216.55
> view matrix models
> #8,-0.82731,0.11552,0.54973,199.75,0.46725,0.68476,0.55928,-189.29,-0.31182,0.71956,-0.62048,246.8
> view matrix models
> #8,-0.79187,0.04909,0.60871,196.18,0.46806,0.68902,0.55333,-189.26,-0.39225,0.72308,-0.56859,252.25
> view matrix models
> #8,-0.91652,-0.089157,0.38992,284.77,0.19129,0.75843,0.62305,-163.18,-0.35127,0.64563,-0.67806,278.84
> view matrix models
> #8,-0.94252,-0.20865,0.26101,335.65,0.15996,0.40405,0.90064,-134.51,-0.29338,0.89062,-0.34745,162.25
> view matrix models
> #8,-0.94252,-0.20865,0.26101,345.63,0.15996,0.40405,0.90064,-88.074,-0.29338,0.89062,-0.34745,143.48
> view matrix models
> #8,-0.99765,0.06376,-0.025111,350.97,0.012312,0.52725,0.84962,-76.136,0.067411,0.84731,-0.5268,115.31
> view matrix models
> #8,-0.99993,0.0095242,-0.0070814,359.12,-0.00088951,0.53485,0.84495,-73.222,0.011835,0.8449,-0.5348,127.68
> view matrix models
> #8,-0.97656,-0.015406,0.21468,321.51,0.19316,0.37726,0.90574,-88.694,-0.094942,0.92598,-0.36544,102.39
> view matrix models
> #8,-0.97656,-0.015406,0.21468,345.04,0.19316,0.37726,0.90574,-84.018,-0.094942,0.92598,-0.36544,107.38
> view matrix models
> #8,-0.96371,-0.038472,0.26418,338.69,0.23791,0.32515,0.91525,-83.669,-0.12111,0.94488,-0.30419,97.976
> view matrix models
> #8,-0.68793,0.063775,-0.72297,436.58,-0.4727,0.71651,0.513,40.922,0.55073,0.69465,-0.46277,49.111
> view matrix models
> #8,-0.69298,0.0606,-0.7184,437.16,-0.47235,0.71464,0.51592,35.576,0.54467,0.69686,-0.46661,54.349
> view matrix models
> #8,-0.77123,-0.021746,0.63619,234.99,0.55787,0.45824,0.69195,-136.89,-0.30657,0.88856,-0.34128,154.25
> view matrix models
> #8,-0.77123,-0.021746,0.63619,224.21,0.55787,0.45824,0.69195,-172.59,-0.30657,0.88856,-0.34128,207.47
> view matrix models
> #8,-0.98189,0.14838,-0.1178,359.66,0.039422,0.76819,0.63901,-127.97,0.18531,0.62279,-0.76012,240.27
> view matrix models
> #8,-0.98189,0.14838,-0.1178,370.49,0.039422,0.76819,0.63901,-91.273,0.18531,0.62279,-0.76012,186.27
> fitmap #8 inMap #1
Fit molecule kelch to test.pdb (#8) to map 4.28A map.mrc (#1) using 2188 atoms
average map value = 0.1922, steps = 88
shifted from previous position = 1.86
rotated from previous position = 16.9 degrees
atoms outside contour = 1068, contour level = 0.18029
Position of kelch to test.pdb (#8) relative to 4.28A map.mrc (#1) coordinates:
Matrix rotation and translation
-0.97400853 0.17148218 0.14799070 320.18370825
0.22472150 0.64958276 0.72632121 -118.39410875
0.02841893 0.74069974 -0.67123488 177.92869630
Axis 0.10919630 0.90807549 0.40432051
Axis point 170.44335759 0.00000000 109.51076978
Rotation angle (degrees) 176.22502917
Shift along axis -0.60768862
> select subtract #8
Nothing selected
> save "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/for
> merge/kelch to test2.pdb" models #8 relModel #1
> hide #8 models
> hide #6 models
> open "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/BTB2 to
> 4.28A map.pdb" "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/BTB1 to
> 4.28A map.pdb"
Chain information for BTB2 to 4.28A map.pdb #9
---
Chain | Description
A | No description available
Chain information for BTB1 to 4.28A map.pdb #10
---
Chain | Description
A | No description available
> select add #10
1908 atoms, 1946 bonds, 236 residues, 1 model selected
> view matrix models #10,1,0,0,71.05,0,1,0,-284.44,0,0,1,145.94
> select add #9
3816 atoms, 3892 bonds, 472 residues, 2 models selected
> select subtract #10
1908 atoms, 1946 bonds, 236 residues, 1 model selected
> view matrix models #9,1,0,0,70.408,0,1,0,-292.64,0,0,1,300.56
> select add #10
3816 atoms, 3892 bonds, 472 residues, 2 models selected
> select subtract #9
1908 atoms, 1946 bonds, 236 residues, 1 model selected
> view matrix models #10,1,0,0,77.175,0,1,0,-310.75,0,0,1,118.44
> view matrix models #10,1,0,0,83.632,0,1,0,-339.61,0,0,1,96.485
> view matrix models #10,1,0,0,-79.615,0,1,0,-208,0,0,1,-72.528
> view matrix models #10,1,0,0,-386.53,0,1,0,-339.96,0,0,1,-137.64
> view matrix models #10,1,0,0,-513.33,0,1,0,-384.1,0,0,1,-90.503
> view matrix models #10,1,0,0,-544.38,0,1,0,-430.43,0,0,1,47.204
> view matrix models #10,1,0,0,-516.33,0,1,0,-437.01,0,0,1,93.467
> select subtract #10
Nothing selected
> select add #9
1908 atoms, 1946 bonds, 236 residues, 1 model selected
> view matrix models #9,1,0,0,174.21,0,1,0,-368.38,0,0,1,428.24
> view matrix models #9,1,0,0,207.66,0,1,0,-411.09,0,0,1,453.91
> view matrix models #9,1,0,0,182.75,0,1,0,-402.32,0,0,1,415.3
> view matrix models #9,1,0,0,354.58,0,1,0,-233.17,0,0,1,322.49
> view matrix models #9,1,0,0,376.27,0,1,0,-285.99,0,0,1,354.27
> select subtract #9
Nothing selected
> select add #10
1908 atoms, 1946 bonds, 236 residues, 1 model selected
> view matrix models #10,1,0,0,-447.19,0,1,0,-412.31,0,0,1,75.428
> view matrix models #10,1,0,0,-444.7,0,1,0,-401.89,0,0,1,72.704
> view matrix models
> #10,0.36032,0.92324,0.1334,-635.97,-0.23341,-0.049224,0.97113,286.02,0.90315,-0.38106,0.19775,-162.77
> view matrix models
> #10,-0.3754,-0.89781,0.23024,1002,0.51156,-0.40785,-0.75628,283.35,0.7729,-0.16613,0.61239,-276.75
> view matrix models
> #10,-0.3754,-0.89781,0.23024,995.52,0.51156,-0.40785,-0.75628,247.39,0.7729,-0.16613,0.61239,-290.47
> select subtract #10
Nothing selected
> select add #9
1908 atoms, 1946 bonds, 236 residues, 1 model selected
> view matrix models #9,1,0,0,370.81,0,1,0,-288.68,0,0,1,408.76
> view matrix models
> #9,-0.54493,0.61426,-0.57073,-271.19,-0.59099,0.20147,0.78112,65.9,0.59479,0.76295,0.25323,75.545
> view matrix models
> #9,-0.54758,0.50315,-0.66858,-232.48,-0.83597,-0.29436,0.46315,209.8,0.036234,0.81252,0.5818,-10.994
> view matrix models
> #9,-0.54758,0.50315,-0.66858,-216.44,-0.83597,-0.29436,0.46315,251.6,0.036234,0.81252,0.5818,-89.592
> view matrix models
> #9,-0.54758,0.50315,-0.66858,-230,-0.83597,-0.29436,0.46315,245,0.036234,0.81252,0.5818,-81.826
> view matrix models
> #9,-0.54758,0.50315,-0.66858,-239.55,-0.83597,-0.29436,0.46315,246.8,0.036234,0.81252,0.5818,-84.733
> view matrix models
> #9,-0.54758,0.50315,-0.66858,-237.89,-0.83597,-0.29436,0.46315,252.58,0.036234,0.81252,0.5818,-88.948
> view matrix models
> #9,-0.44353,0.52948,-0.72314,-237.36,-0.89588,-0.23839,0.37493,204.7,0.026129,0.81414,0.58008,-91.792
> view matrix models
> #9,-0.28182,0.46608,-0.83866,-192.19,-0.95943,-0.12896,0.25073,127.04,0.0087051,0.87529,0.48351,-135.17
> view matrix models
> #9,-0.28046,0.46742,-0.83837,-194.35,-0.95983,-0.1288,0.24928,122.39,0.0085425,0.8746,0.48476,-139.54
> view matrix models
> #9,-0.21052,0.41167,-0.88669,-161.54,-0.97756,-0.081063,0.19445,90.297,0.0081733,0.90772,0.41949,-162.94
> view matrix models
> #9,-0.19637,0.45486,-0.86864,-176.6,-0.96829,0.049603,0.24487,37.947,0.15447,0.88918,0.43069,-125.71
> view matrix models
> #9,-0.19637,0.45486,-0.86864,-176.58,-0.96829,0.049603,0.24487,38.055,0.15447,0.88918,0.43069,-125.82
> view matrix models
> #9,-0.19637,0.45486,-0.86864,-178.2,-0.96829,0.049603,0.24487,33.144,0.15447,0.88918,0.43069,-125.15
> fitmap #9 inMap #1
Fit molecule BTB2 to 4.28A map.pdb (#9) to map 4.28A map.mrc (#1) using 1908
atoms
average map value = 0.209, steps = 88
shifted from previous position = 2.07
rotated from previous position = 11.2 degrees
atoms outside contour = 869, contour level = 0.18029
Position of BTB2 to 4.28A map.pdb (#9) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.34214442 0.35034433 -0.87189222 -153.12508559
-0.91964844 0.06556686 0.38723084 52.10921412
0.19283137 0.93432320 0.29976028 -155.88708256
Axis 0.31347864 -0.61007635 -0.72769361
Axis point -80.87945582 157.33228799 0.00000000
Rotation angle (degrees) 119.23603934
Shift along axis 33.64599084
> fitmap #10 inMap #1
Fit molecule BTB1 to 4.28A map.pdb (#10) to map 4.28A map.mrc (#1) using 1908
atoms
average map value = 0.205, steps = 124
shifted from previous position = 2.63
rotated from previous position = 11.3 degrees
atoms outside contour = 884, contour level = 0.18029
Position of BTB1 to 4.28A map.pdb (#10) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.25698333 -0.95975457 0.11327283 974.20628960
0.49849238 -0.23205542 -0.83525783 151.19502877
0.82792809 -0.15818169 0.53806471 -322.59984404
Axis 0.38482360 -0.40618210 0.82881054
Axis point 500.87638731 340.57512845 0.00000000
Rotation angle (degrees) 118.39106433
Shift along axis 46.11070425
> fitmap #10 inMap #1
Fit molecule BTB1 to 4.28A map.pdb (#10) to map 4.28A map.mrc (#1) using 1908
atoms
average map value = 0.205, steps = 40
shifted from previous position = 0.00831
rotated from previous position = 0.00302 degrees
atoms outside contour = 885, contour level = 0.18029
Position of BTB1 to 4.28A map.pdb (#10) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.25696347 -0.95976239 0.11325168 974.19876790
0.49853580 -0.23203407 -0.83523784 151.15404625
0.82790811 -0.15816560 0.53810019 -322.60848132
Axis 0.38481232 -0.40617320 0.82882013
Axis point 500.88503637 340.56655820 0.00000000
Rotation angle (degrees) 118.38856749
Shift along axis 46.10455829
> view matrix models
> #9,-0.34214,0.35034,-0.87189,-152.94,-0.91965,0.065567,0.38723,52.465,0.19283,0.93432,0.29976,-157.64
> fitmap #10 inMap #1
Fit molecule BTB1 to 4.28A map.pdb (#10) to map 4.28A map.mrc (#1) using 1908
atoms
average map value = 0.205, steps = 40
shifted from previous position = 0.0115
rotated from previous position = 0.00157 degrees
atoms outside contour = 884, contour level = 0.18029
Position of BTB1 to 4.28A map.pdb (#10) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.25697475 -0.95975844 0.11325951 974.20563131
0.49851313 -0.23204294 -0.83524891 151.17056148
0.82791826 -0.15817652 0.53808136 -322.59608936
Axis 0.38481700 -0.40617938 0.82881493
Axis point 500.88040308 340.57045059 0.00000000
Rotation angle (degrees) 118.38983632
Shift along axis 46.11607356
> fitmap #9 inMap #1
Fit molecule BTB2 to 4.28A map.pdb (#9) to map 4.28A map.mrc (#1) using 1908
atoms
average map value = 0.209, steps = 60
shifted from previous position = 1.78
rotated from previous position = 0.0271 degrees
atoms outside contour = 869, contour level = 0.18029
Position of BTB2 to 4.28A map.pdb (#9) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.34198316 0.34997042 -0.87210563 -152.93890563
-0.91971432 0.06576060 0.38704150 51.98606504
0.19280326 0.93444970 0.29938379 -156.00957733
Axis 0.31366178 -0.61018673 -0.72752212
Axis point -80.84208516 157.31187888 0.00000000
Rotation angle (degrees) 119.23674499
Shift along axis 33.80812229
> view matrix models
> #9,-0.34198,0.34997,-0.87211,-153.02,-0.91971,0.065761,0.38704,52.022,0.1928,0.93445,0.29938,-155.44
> fitmap #9 inMap #1
Fit molecule BTB2 to 4.28A map.pdb (#9) to map 4.28A map.mrc (#1) using 1908
atoms
average map value = 0.209, steps = 52
shifted from previous position = 0.573
rotated from previous position = 0.0396 degrees
atoms outside contour = 869, contour level = 0.18029
Position of BTB2 to 4.28A map.pdb (#9) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.34235094 0.35038044 -0.87179664 -153.17472715
-0.91960293 0.06532675 0.38737949 52.26987036
0.19268183 0.93432648 0.29984620 -155.91611042
Axis 0.31343162 -0.61000648 -0.72777243
Axis point -80.86522935 157.39807147 0.00000000
Rotation angle (degrees) 119.24788234
Shift along axis 33.57668486
> select subtract #9
Nothing selected
> select add #10
1908 atoms, 1946 bonds, 236 residues, 1 model selected
> view matrix models
> #10,-0.25697,-0.95976,0.11326,974.1,0.49851,-0.23204,-0.83525,149.67,0.82792,-0.15818,0.53808,-322.34
> fitmap #10 inMap #1
Fit molecule BTB1 to 4.28A map.pdb (#10) to map 4.28A map.mrc (#1) using 1908
atoms
average map value = 0.205, steps = 64
shifted from previous position = 1.53
rotated from previous position = 0.000947 degrees
atoms outside contour = 884, contour level = 0.18029
Position of BTB1 to 4.28A map.pdb (#10) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.25698663 -0.95975647 0.11324929 974.20856118
0.49850964 -0.23204009 -0.83525178 151.17985931
0.82791667 -0.15819267 0.53807905 -322.59666997
Axis 0.38481080 -0.40618570 0.82881471
Axis point 500.87926741 340.57382417 0.00000000
Rotation angle (degrees) 118.39020575
Shift along axis 46.10601239
> save "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/BTB1 to
> 4.28A map.pdb" relModel #1
> select subtract #10
Nothing selected
> save "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/BTB1 to
> 4.28A map.pdb" models #10 relModel #1
> save "/Users/xiaowenxie/OneDrive - UW/Mac
> mini/Documents/Ubiquitin/KBTBD4/Cryo-EM/xlink-NdeLHC86-K4wt-UM171/uw-xxie-
> glacios-23jul28a/4.28A map of K4wt-UM171-HDAC1 analysis/withK4wtPDB/BTB2 to
> 4.28A map.pdb" models #9 relModel #1
> open /Users/xiaowenxie/Downloads/enhanced_default.mrc
Opened enhanced_default.mrc as #11, grid size 440,440,440, pixel 0.885, shown
at level 0.000223, step 2, values float32
> volume #11 step 1
> volume #11 level 0.2473
> volume #11 color #ff7e7956
> volume #11 color #ff7e7957
> fitmap #11 inMap #1
Fit map enhanced_default.mrc in map 4.28A map.mrc using 55348 points
correlation = 0.9509, correlation about mean = 0.7864, overlap = 1.069e+04
steps = 40, shift = 0.109, angle = 0.0149 degrees
Position of enhanced_default.mrc (#11) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
0.99999997 -0.00025729 0.00001772 -0.01819114
0.00025729 0.99999997 -0.00002825 -0.09648227
-0.00001771 0.00002826 1.00000000 -0.07298708
Axis 0.10889835 0.06828645 0.99170465
Axis point 353.49988311 -36.48551819 0.00000000
Rotation angle (degrees) 0.01486512
Shift along axis -0.08095104
> volume #11 level 0.2192
> select add #11
2 models selected
> view matrix models
> #11,1,-0.00025729,1.772e-05,11.314,0.00025729,1,-2.8251e-05,-41.424,-1.7713e-05,2.8255e-05,1,102.19
> view matrix models
> #11,1,-0.00025729,1.772e-05,9.7489,0.00025729,1,-2.8251e-05,-52.67,-1.7713e-05,2.8255e-05,1,124.73
> view matrix models
> #11,1,-0.00025729,1.772e-05,9.7206,0.00025729,1,-2.8251e-05,-50.504,-1.7713e-05,2.8255e-05,1,124.7
> view matrix models
> #11,1,-0.00025729,1.772e-05,7.193,0.00025729,1,-2.8251e-05,-0.6138,-1.7713e-05,2.8255e-05,1,1.7718
> fitmap #11 inMap #1
Fit map enhanced_default.mrc in map 4.28A map.mrc using 60335 points
correlation = 0.6323, correlation about mean = 0.08944, overlap = 4155
steps = 212, shift = 8.52, angle = 0.812 degrees
Position of enhanced_default.mrc (#11) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
0.99991462 0.01178080 -0.00565364 -0.78300240
-0.01180825 0.99991853 -0.00484757 -2.50056247
0.00559607 0.00491391 0.99997227 -0.12068653
Axis 0.34990173 -0.40324729 -0.84555331
Axis point -183.82135896 89.97453780 0.00000000
Rotation angle (degrees) 0.79923825
Shift along axis 0.83641803
> view matrix models
> #11,0.99991,0.011781,-0.0056536,-1.4729,-0.011808,0.99992,-0.0048476,3.6032,0.0055961,0.0049139,0.99997,-2.0635
> fitmap #11 inMap #1
Fit map enhanced_default.mrc in map 4.28A map.mrc using 60335 points
correlation = 0.9463, correlation about mean = 0.7937, overlap = 1.094e+04
steps = 68, shift = 0.466, angle = 0.81 degrees
Position of enhanced_default.mrc (#11) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
0.99999997 -0.00023280 -0.00001036 -0.01789709
0.00023280 0.99999997 -0.00000753 -0.09576516
0.00001036 0.00000753 1.00000000 -0.07508767
Axis 0.03228680 -0.04441945 0.99849110
Axis point 424.95873049 -67.03879147 0.00000000
Rotation angle (degrees) 0.01335861
Shift along axis -0.07129837
> select subtract #11
Nothing selected
> hide #!1 models
> hide #!11 models
> show #!11 models
> hide #10 models
> hide #9 models
> select add #2
3144 atoms, 3225 bonds, 391 residues, 1 model selected
> view matrix models
> #2,-0.99536,0.073223,0.062407,398.09,-0.010856,-0.72999,0.68337,172.23,0.095595,0.67952,0.7274,15.248
> view matrix models
> #2,-0.99536,0.073223,0.062407,398.17,-0.010856,-0.72999,0.68337,173.39,0.095595,0.67952,0.7274,14.323
> view matrix models
> #2,-0.86298,-0.083372,-0.49831,438.42,-0.27423,-0.75107,0.60057,238.23,-0.42434,0.65493,0.6253,134.92
> view matrix models
> #2,-0.86298,-0.083372,-0.49831,439.84,-0.27423,-0.75107,0.60057,234.68,-0.42434,0.65493,0.6253,131.98
> view matrix models
> #2,-0.90836,-0.049652,0.41524,361.23,0.32213,-0.71628,0.61902,104.83,0.26669,0.69605,0.66663,-20.419
> view matrix models
> #2,-0.98253,0.086129,0.165,386.1,0.16805,0.79158,0.5875,-13.525,-0.08001,0.60496,-0.79222,196.49
> view matrix models
> #2,-0.93514,0.18571,0.30169,353.39,-0.063919,0.74917,-0.65929,154.81,-0.34845,-0.63581,-0.68871,369.27
> view matrix models
> #2,-0.93514,0.18571,0.30169,355.76,-0.063919,0.74917,-0.65929,166.36,-0.34845,-0.63581,-0.68871,364.82
> view matrix models
> #2,-0.93514,0.18571,0.30169,356.32,-0.063919,0.74917,-0.65929,163.46,-0.34845,-0.63581,-0.68871,360.63
> fitmap #2 inMap #1
Fit molecule HDAC1 to 4.28A map.pdb (#2) to map 4.28A map.mrc (#1) using 3144
atoms
average map value = 0.09482, steps = 92
shifted from previous position = 3.49
rotated from previous position = 7 degrees
atoms outside contour = 2479, contour level = 0.18029
Position of HDAC1 to 4.28A map.pdb (#2) relative to 4.28A map.mrc (#1)
coordinates:
Matrix rotation and translation
-0.88884923 0.23353583 0.39421830 330.77336124
-0.10916657 0.72765318 -0.67720271 175.48666673
-0.44500529 -0.64496657 -0.62127966 377.25918524
Axis 0.03553867 0.92520023 -0.37781151
Axis point 212.45494022 0.00000000 181.73787186
Rotation angle (degrees) 153.02920974
Shift along axis 31.58268842
> fitmap #2 inMap #11
Fit molecule HDAC1 to 4.28A map.pdb (#2) to map enhanced_default.mrc (#11)
using 3144 atoms
average map value = 0.1288, steps = 72
shifted from previous position = 0.343
rotated from previous position = 6.45 degrees
atoms outside contour = 2534, contour level = 0.21921
Position of HDAC1 to 4.28A map.pdb (#2) relative to enhanced_default.mrc (#11)
coordinates:
Matrix rotation and translation
-0.88072639 0.32955112 0.34017214 324.86078492
-0.00474101 0.71206006 -0.70210256 157.50743500
-0.47360168 -0.61997301 -0.62556768 381.07847023
Axis 0.09295025 0.92098988 -0.37833569
Axis point 204.14760364 0.00000000 182.18475799
Rotation angle (degrees) 153.78166053
Shift along axis 31.08305985
> view matrix models
> #2,-0.88072,0.32939,0.34034,323.53,-0.0049425,0.71214,-0.70202,156.46,-0.47361,-0.61996,-0.62557,381.96
> view matrix models
> #2,-0.88072,0.32939,0.34034,323,-0.0049425,0.71214,-0.70202,159,-0.47361,-0.61996,-0.62557,382.54
> view matrix models
> #2,-0.88072,0.32939,0.34034,323.57,-0.0049425,0.71214,-0.70202,158.51,-0.47361,-0.61996,-0.62557,382.06
> view matrix models
> #2,-0.88072,0.32939,0.34034,323.72,-0.0049425,0.71214,-0.70202,157.06,-0.47361,-0.61996,-0.62557,381.85
> view matrix models
> #2,-0.89722,0.42394,0.12358,337.65,0.31199,0.80663,-0.50201,62.718,-0.31251,-0.41186,-0.85598,348.35
> view matrix models
> #2,-0.89722,0.42394,0.12358,340.14,0.31199,0.80663,-0.50201,62.391,-0.31251,-0.41186,-0.85598,346.33
> view matrix models
> #2,-0.89722,0.42394,0.12358,339.1,0.31199,0.80663,-0.50201,60.846,-0.31251,-0.41186,-0.85598,343.27
> view matrix models
> #2,-0.87029,0.34177,0.35466,320.42,0.14309,-0.51357,0.84603,105.57,0.47129,0.78705,0.39805,-58.739
> view matrix models
> #2,-0.87029,0.34177,0.35466,320.31,0.14309,-0.51357,0.84603,107.41,0.47129,0.78705,0.39805,-55.255
> fitmap #2 inMap #11
Fit molecule HDAC1 to 4.28A map.pdb (#2) to map enhanced_default.mrc (#11)
using 3144 atoms
average map value = 0.1194, steps = 188
shifted from previous position = 2.98
rotated from previous position = 8.47 degrees
atoms outside contour = 2577, contour level = 0.21921
Position of HDAC1 to 4.28A map.pdb (#2) relative to enhanced_default.mrc (#11)
coordinates:
Matrix rotation and translation
-0.87458124 0.21691137 0.43365553 324.21453342
0.25751612 -0.55001367 0.79446234 91.90245502
0.41084438 0.80649515 0.42517346 -44.84307510
Axis 0.25014756 0.47421625 0.84412389
Axis point 168.39027720 60.70234939 0.00000000
Rotation angle (degrees) 178.62182230
Shift along axis 86.83000243
> view matrix models
> #2,-0.87465,0.21703,0.43347,327.5,0.25731,-0.54997,0.79456,90.318,0.41084,0.80649,0.42518,-45.234
> view matrix models
> #2,-0.97333,0.15615,0.16806,378.92,0.043143,-0.59493,0.80262,138.89,0.22532,0.78846,0.57233,-18.273
> view matrix models
> #2,-0.97333,0.15615,0.16806,377.78,0.043143,-0.59493,0.80262,142.11,0.22532,0.78846,0.57233,-11.039
> view matrix models
> #2,-0.92639,-0.37602,0.020316,435.77,0.26576,-0.61461,0.74271,101.47,-0.26679,0.69344,0.6693,92.273
> view matrix models
> #2,-0.95884,0.2832,-0.020527,379.24,-0.22538,-0.71512,0.66167,221.82,0.17271,0.63906,0.74952,-1.4526
> view matrix models
> #2,-0.9776,0.20999,-0.014386,389.85,-0.1666,-0.73023,0.66258,208.28,0.12863,0.65013,0.74885,9.3039
> view matrix models
> #2,-0.97171,0.23196,-0.044312,389.16,-0.19988,-0.70792,0.67742,211.59,0.12577,0.66712,0.73426,9.5254
> view matrix models
> #2,-0.95216,0.22256,-0.20942,401.33,-0.30552,-0.6781,0.66845,231.46,0.0067596,0.70046,0.71366,32.906
> view matrix models
> #2,-0.91866,0.022057,-0.39442,431.89,-0.28679,-0.72388,0.62749,236,-0.27168,0.68957,0.67133,96.112
> view matrix models
> #2,-0.95073,-0.031909,-0.30837,436.18,-0.18983,-0.7265,0.66043,213.51,-0.24511,0.68642,0.68465,87.979
> fitmap #2 inMap #11
Fit molecule HDAC1 to 4.28A map.pdb (#2) to map enhanced_default.mrc (#11)
using 3144 atoms
average map value = 0.1293, steps = 84
shifted from previous position = 3.63
rotated from previous position = 6.98 degrees
atoms outside contour = 2524, contour level = 0.21921
Position of HDAC1 to 4.28A map.pdb (#2) relative to enhanced_default.mrc (#11)
coordinates:
Matrix rotation and translation
-0.94812013 0.08951513 -0.30504961 422.90349997
-0.27162198 -0.72669561 0.63097939 230.09464918
-0.16519601 0.68110244 0.71330902 70.82559936
Axis 0.12835561 -0.35813851 -0.92480357
Axis point 226.84258740 78.15450517 0.00000000
Rotation angle (degrees) 168.74063018
Shift along axis -93.62348337
> fitmap #2 inMap #11
Fit molecule HDAC1 to 4.28A map.pdb (#2) to map enhanced_default.mrc (#11)
using 3144 atoms
average map value = 0.1293, steps = 44
shifted from previous position = 0.00925
rotated from previous position = 0.025 degrees
atoms outside contour = 2521, contour level = 0.21921
Position of HDAC1 to 4.28A map.pdb (#2) relative to enhanced_default.mrc (#11)
coordinates:
Matrix rotation and translation
-0.94818480 0.08962097 -0.30481743 422.88201322
-0.27159682 -0.72646601 0.63125455 230.04318403
-0.16486586 0.68133341 0.71316480 70.75515356
Axis 0.12820831 -0.35829394 -0.92476380
Axis point 226.82103275 78.13036607 0.00000000
Rotation angle (degrees) 168.73759129
Shift along axis -93.63789736
> view matrix models
> #2,-0.94812,0.089783,-0.30497,419.95,-0.27182,-0.72645,0.63118,231.38,-0.16488,0.68133,0.71317,71.291
> view matrix models
> #2,-0.98807,-0.12714,0.086936,414.05,0.15363,-0.77329,0.61516,148.74,-0.010985,0.62117,0.7836,38.733
> fitmap #2 inMap #11
Fit molecule HDAC1 to 4.28A map.pdb (#2) to map enhanced_default.mrc (#11)
using 3144 atoms
average map value = 0.303, steps = 104
shifted from previous position = 1.64
rotated from previous position = 17.9 degrees
atoms outside contour = 1699, contour level = 0.21921
Position of HDAC1 to 4.28A map.pdb (#2) relative to enhanced_default.mrc (#11)
coordinates:
Matrix rotation and translation
-0.99898244 0.03845164 0.02357031 406.55890885
-0.02560518 -0.91376065 0.40544525 219.89152544
0.03712766 0.40442917 0.91381540 37.28892540
Axis -0.01551664 -0.20703402 -0.97821069
Axis point 204.67117899 102.60830267 0.00000000
Rotation angle (degrees) 178.12369599
Shift along axis -88.30988163
> view matrix models
> #2,-0.99898,0.03866,0.023466,406.57,-0.025838,-0.91375,0.40544,220.46,0.037117,0.40442,0.91382,37.104
> fitmap #2 inMap #11
Fit molecule HDAC1 to 4.28A map.pdb (#2) to map enhanced_default.mrc (#11)
using 3144 atoms
average map value = 0.303, steps = 64
shifted from previous position = 0.588
rotated from previous position = 0.0125 degrees
atoms outside contour = 1696, contour level = 0.21921
Position of HDAC1 to 4.28A map.pdb (#2) relative to enhanced_default.mrc (#11)
coordinates:
Matrix rotation and translation
-0.99898228 0.03836099 0.02372439 406.54946895
-0.02545534 -0.91371537 0.40555672 219.84971341
0.03723490 0.40454007 0.91376195 37.26336120
Axis -0.01558363 -0.20709334 -0.97819707
Axis point 204.65868736 102.60169111 0.00000000
Rotation angle (degrees) 178.13071659
Shift along axis -88.31583864
> select subtract #2
Nothing selected
> color #11 #ffd479ff models
> color #11 #ffd47975 models
> show #!1 models
> hide #!11 models
> show #!11 models
> hide #!1 models
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6rc202304050652 (2023-04-05)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 71.7.1
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: Mac mini
Model Identifier: Macmini9,1
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 16 GB
System Firmware Version: 6723.140.2
OS Loader Version: 6723.140.2
Software:
System Software Overview:
System Version: macOS 11.5.2 (20G95)
Kernel Version: Darwin 20.6.0
Time since boot: 6 days 14:14
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
BenQ GC2870:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: Yes
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9
ChimeraX-AddH: 2.2.4
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6rc202304050652
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.2
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.6
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.1.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.2.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 |
comment:2 by , 2 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
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