![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#9625 closed defect (nonchimerax)
Graphics crash, macOS 12.6.7, AMD Radeon R9 M390
| Reported by: | Owned by: | Tom Goddard | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Graphics | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.6.1 (2023-05-09 17:57:07 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Aborted
Current thread 0x000000010df02600 (most recent call first):
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 1178 in draw_background
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 1978 in blend3d
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py", line 1285 in _fill_texture_blend
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py", line 1240 in _fill_textures
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py", line 1147 in __init__
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py", line 610 in _texture_3d_planes
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py", line 600 in _update_3d_texture_planes
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py", line 548 in _update_planes
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py", line 783 in draw
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py", line 1364 in draw
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/map/image3d.py", line 773 in draw
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1555 in _draw_multiple
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1549 in
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/opengl.py", line 1252 in draw_transparent
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/drawing.py", line 1547 in draw_transparent
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 254 in _draw_scene
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/graphics/view.py", line 177 in draw
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 73 in draw_new_frame
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 275 in event_loop
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/private/var/folders/gr/q3r8vmqs1klctz180n59gg8nz2wg13/T/AppTranslocation/BF28193E-16DC-4508-BB14-C1E8B5BCB000/d/ChimeraX-1.6.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2023-08-23 13:31:16.00 +0200","app_version":"1.6.1","slice_uuid":"5df621ee-554e-36a8-b448-93b2334e5480","build_version":"1.6.1.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 12.6.7 (21G651)","incident_id":"21BE42B8-5765-49D4-8235-EFF463E19FC5","name":"ChimeraX"}
{
"uptime" : 48000,
"procLaunch" : "2023-08-23 11:41:05.4495 +0200",
"procRole" : "Foreground",
"version" : 2,
"userID" : 2116959267,
"deployVersion" : 210,
"modelCode" : "iMac17,1",
"procStartAbsTime" : 42531490684436,
"coalitionID" : 1027,
"osVersion" : {
"train" : "macOS 12.6.7",
"build" : "21G651",
"releaseType" : "User"
},
"captureTime" : "2023-08-23 13:28:20.4571 +0200",
"incident" : "21BE42B8-5765-49D4-8235-EFF463E19FC5",
"bug_type" : "309",
"pid" : 33997,
"procExitAbsTime" : 48959595514927,
"cpuType" : "X86-64",
"procName" : "ChimeraX",
"procPath" : "\/Volumes\/VOLUME\/*\/ChimeraX-1.6.1.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.1","CFBundleVersion":"1.6.1.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"6ABACB1B-26AD-5E25-9CD2-2DC959367A07","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "57D313EE-34E8-364D-B51B-D92D0D905064",
"wakeTime" : 15013,
"sleepWakeUUID" : "AF412874-EB24-4CB9-BE4A-200136F6D5CD",
"sip" : "enabled",
"isCorpse" : 1,
"exception" : {"codes":"0x0000000000000000, 0x0000000000000000","rawCodes":[0,0],"type":"EXC_CRASH","signal":"SIGABRT"},
"ktriageinfo" : "VM - Fault hit memory shortage\nVM - Fault hit memory shortage\nVM - Fault hit memory shortage\nVM - Fault hit memory shortage\nVM - Fault hit memory shortage\n",
"asi" : {"libsystem_c.dylib":["abort() called"]},
"asiSignatures" : ["Graphics kernel error: 0x1bfb85f9\n"],
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : 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"vmSummary" : "ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=5.7G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=5.7G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG backing stores 3840K 4 \nCG image 456K 36 \nColorSync 232K 28 \nCoreAnimation 248K 20 \nCoreGraphics 12K 2 \nCoreUI image data 4920K 39 \nFoundation 16K 1 \nIOKit 7940K 1 \nKernel Alloc Once 8K 1 \nMALLOC 5.3G 1149 \nMALLOC guard page 32K 8 \nMALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)\nMach message 16K 2 \nObjC additional data 15K 1 \nOpenGL GLSL 384K 4 \nSTACK GUARD 148K 37 \nStack 154.3M 38 \nStack Guard 56.0M 1 \nVM_ALLOCATE 146.1M 180 \nVM_ALLOCATE (reserved) 96.0M 2 reserved VM address space (unallocated)\n__CTF 756 1 \n__DATA 60.8M 782 \n__DATA_CONST 31.0M 342 \n__DATA_DIRTY 1641K 213 \n__FONT_DATA 4K 1 \n__GLSLBUILTINS 5176K 1 \n__LINKEDIT 685.6M 236 \n__TEXT 909.5M 764 \n__UNICODE 592K 1 \ndyld private memory 1056K 3 \nmapped file 188.2M 48 \nshared memory 6292K 33 \n=========== ======= ======= \nTOTAL 7.6G 3984 \nTOTAL, minus reserved VM space 7.5G 3984 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "61301e3a61217b3110231469",
"factorPackIds" : {
"SIRI_FIND_MY_CONFIGURATION_FILES" : "6348493aa52bb16adc4e4d06"
},
"deploymentId" : 240000023
},
{
"rolloutId" : "6297d96be2c9387df974efa4",
"factorPackIds" : {
},
"deploymentId" : 240000014
}
],
"experiments" : [
{
"treatmentId" : "6dd670af-0633-45e4-ae5f-122ae4df02be",
"experimentId" : "64406ba83deb637ac8a04419",
"deploymentId" : 900000017
}
]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Volumes/msdata/elandino/subtomo/dicty_ribos_sorbitol/warp/nuc_relion/nucleusome_b2_TS_065_TM_angles_subtomos_3.1.star
Summary of feedback from opening
/Volumes/msdata/elandino/subtomo/dicty_ribos_sorbitol/warp/nuc_relion/nucleusome_b2_TS_065_TM_angles_subtomos_3.1.star
---
notes | Using preset: ArtiaX / Artiax Default
Preset expands to these ChimeraX commands:
set bgColor black
lighting depthCue false
camera ortho
15
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']
Opened Particle list nucleusome_b2_TS_065_TM_angles_subtomos_3.1.star with
18719 particles.
> ui mousemode right "delete picked particle"
Opened 065_13,06Apx.mrc as #1.1.1, grid size 676,960,334, pixel
13.1,13.1,13.1, shown at level 0.127, step 1, values float32
> artiax tomo #1.1.1 sliceDirection 0,0,1
> artiax view xy
> artiax tomo #1.1.1 pixelSize 13.055999214127219
> artiax view xy
> artiax tomo #1.1.1 pixelSize 13.055999214127219
> artiax view xy
> artiax tomo #1.1.1 pixelSize 13.055999214127219
> artiax view xy
set axis size 65.25
65.25
['.arrow', '0', '0', '0', '65.25', '0', '0', '4.35', '17.4']
> artiax particles #1.2.1 originScaleFactor 4.35
> artiax view xy
set axis size 65.28
65.28
['.arrow', '0', '0', '0', '65.28', '0', '0', '4.352', '17.408']
> artiax particles #1.2.1 originScaleFactor 4.352
> artiax view xy
> artiax particles #1.2.1 transScaleFactor 4.352
> artiax view xy
> artiax hide axes
> view orient
> artiax tomo #1.1.1 slice 195
> artiax tomo #1.1.1 slice 205
> artiax tomo #1.1.1 slice 204
> artiax tomo #1.1.1 slice 203
> artiax tomo #1.1.1 slice 193
> artiax tomo #1.1.1 slice 194
> artiax tomo #1.1.1 slice 195
> artiax tomo #1.1.1 slice 194
> artiax tomo #1.1.1 slice 195
> artiax tomo #1.1.1 slice 196
> artiax tomo #1.1.1 slice 197
> artiax tomo #1.1.1 slice 198
> artiax tomo #1.1.1 slice 197
> artiax tomo #1.1.1 slice 196
> hide #!1.2.1 models
> show #!1.2.1 models
> hide #!1.2.1 models
> show #!1.2.1 models
> hide #!1.2.1 models
> show #!1.2.1 models
> hide #!1.2.1 models
> show #!1.2.1 models
> hide #!1.2.1 models
> show #!1.2.1 models
> hide #!1.2.1 models
> show #!1.2.1 models
> hide #!1.2.1 models
> show #!1.2.1 models
> hide #!1.2.1 models
> show #!1.2.1 models
> hide #!1.2.1 models
> show #!1.2.1 models
> view orient
> ui mousemode right zoom
> artiax tomo #1.1.1 slice 189
> artiax tomo #1.1.1 slice 209
> open
> /Volumes/msdata/elandino/subtomo/dicty_ribos_sorbitol/warp/mrc/reconstruction/deconv/065_13,06Apx.mrc
Opened 065_13,06Apx.mrc as #2, grid size 676,960,334, pixel 13.1,13.1,13.1,
shown at level 0.0761, step 4, values float32
> artiax add tomo #2
Opened 065_13,06Apx.mrc as #1.1.2, grid size 676,960,334, pixel
13.1,13.1,13.1, shown at level 0.0761, step 1, values float32
> artiax tomo #1.1.2 sliceDirection 0,0,1
> artiax view xy
> hide #!1.1.1 models
> hide #!1.2.1 models
> show #!1.2.1 models
> artiax tomo #1.1.2 slice 190
> view orient
> artiax tomo #1.1.2 slice 186
> artiax tomo #1.1.2 slice 294
> artiax tomo #1.1.2 slice 175
> hide #!1.1.2 models
> hide #!1.2.1 models
> open
> /Volumes/msdata/elandino/subtomo/TRiC_closed/tomsa/Relion4.0_ManClean/input/CLEANED_allmotl_b1_open_closed_TRiC_1_righthanded_relion4.star
> format star
Summary of feedback from opening
/Volumes/msdata/elandino/subtomo/TRiC_closed/tomsa/Relion4.0_ManClean/input/CLEANED_allmotl_b1_open_closed_TRiC_1_righthanded_relion4.star
---
notes | 15
['.arrow', '0', '0', '0', '15', '0', '0', '1.0', '4.0']
Opened Particle list
CLEANED_allmotl_b1_open_closed_TRiC_1_righthanded_relion4.star with 383
particles.
Opened 505_dose-filt_rec.mrc as #1.1.3, grid size 1016,1440,500, pixel 4,
shown at level 86, step 1, values int8
> artiax tomo #1.1.3 sliceDirection 0,0,1
> artiax view xy
> artiax tomo #1.1.3 pixelSize 8.704
> artiax view xy
> artiax tomo #1.1.3 pixelSize 8.704
> artiax view xy
> artiax tomo #1.1.3 pixelSize 8.704
> artiax view xy
set axis size 32.64
32.64
['.arrow', '0', '0', '0', '32.64', '0', '0', '2.176', '8.704']
> artiax particles #1.2.2 originScaleFactor 2.176
> artiax view xy
> artiax particles #1.2.2 transScaleFactor 1.0
> artiax view xy
Please enter a valid number for the pixelsize.
> artiax particles #1.2.2 transScaleFactor 2.176
> artiax view xy
> artiax particles #1.2.2 radius 56.44247
> artiax hide axes
> artiax tomo #1.1.3 slice 256
> artiax tomo #1.1.3 slice 255
> artiax tomo #1.1.3 slice 254
> artiax tomo #1.1.3 slice 253
> hide #!1.2.2 models
> show #!1.2.2 models
> hide #!1.2.2 models
> show #!1.2.2 models
> volume flip #1.1.3
Opened 505_dose-filt_rec.mrc z flip as #2, grid size 1016,1440,500, pixel 8.7,
shown at step 1, values int8
> volume flip #1.1.3
Opened 505_dose-filt_rec.mrc z flip as #3, grid size 1016,1440,500, pixel 8.7,
shown at step 1, values int8
> volume flip #1.1.3
Opened 505_dose-filt_rec.mrc z flip as #4, grid size 1016,1440,500, pixel 8.7,
shown at step 1, values int8
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6.1 (2023-05-09)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 ATI-4.8.101
OpenGL renderer: AMD Radeon R9 M390 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: iMac
Model Identifier: iMac17,1
Processor Name: Quad-Core Intel Core i5
Processor Speed: 3,2 GHz
Number of Processors: 1
Total Number of Cores: 4
L2 Cache (per Core): 256 KB
L3 Cache: 6 MB
Memory: 16 GB
System Firmware Version: 512.0.0.0.0
OS Loader Version: 540.120.3~22
SMC Version (system): 2.33f12
Software:
System Software Overview:
System Version: macOS 12.6.7 (21G651)
Kernel Version: Darwin 21.6.0
Time since boot: 1 day 4:26
Graphics/Displays:
AMD Radeon R9 M390:
Chipset Model: AMD Radeon R9 M390
Type: GPU
Bus: PCIe
PCIe Lane Width: x16
VRAM (Total): 2 GB
Vendor: AMD (0x1002)
Device ID: 0x6819
Revision ID: 0x0000
ROM Revision: 113-C408WA-799
VBIOS Version: 113-C408W1-009
EFI Driver Version: 01.00.799
Metal Family: Supported, Metal GPUFamily macOS 2
Displays:
iMac:
Display Type: Built-In Retina LCD
Resolution: Retina 5K (5120 x 2880)
Framebuffer Depth: 30-Bit Color (ARGB2101010)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9.1
ChimeraX-AddH: 2.2.5
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-ArtiaX: 0.3
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6.1
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.4
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7.2
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.3
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.2
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
geomdl: 5.3.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
pandas: 2.0.1
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
starfile: 0.4.12
superqt: 0.4.1
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Component: | Unassigned → Graphics |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Crash drawing background |
comment:2 by , 2 years ago
| Resolution: | → nonchimerax |
|---|---|
| Status: | assigned → closed |
| Summary: | Crash drawing background → Graphics crash, macOS 12.6.7, AMD Radeon R9 M390 |
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Apple Radeon graphics driver crash.