Opened 2 years ago
Last modified 2 years ago
#9657 feedback defect
Crash using open/save dialog
Reported by: | Owned by: | pett | |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | Input/Output | Version: | |
Keywords: | Cc: | ||
Blocked By: | Blocking: | ||
Notify when closed: | Platform: | all | |
Project: | ChimeraX |
Description
The following bug report has been submitted: Platform: Linux-5.14.0-1059-oem-x86_64-with-glibc2.31 ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Aborted Thread 0x00007f8f60ff9700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 576 in _handle_results File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8f617fa700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 528 in _handle_tasks File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8f61ffb700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/selectors.py", line 416 in select File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/connection.py", line 936 in wait File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 499 in _wait_for_updates File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 519 in _handle_workers File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8f627fc700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8f62ffd700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8f637fe700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8f63fff700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8f80ff9700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8f817fa700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8f81ffb700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8f827fc700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8f82ffd700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8f837fe700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8f83fff700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fa0ff9700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fa17fa700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fa1ffb700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fa27fc700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fa2ffd700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fa37fe700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fa3fff700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fc0ff9700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fc17fa700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fc1ffb700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fc27fc700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fc2ffd700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fc37fe700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fc3fff700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fe0ff9700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fe17fa700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fe1ffb700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fe27fc700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fe2ffd700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fe37fe700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f8fe3fff700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f9000ff9700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f90017fa700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f9001ffb700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f90027fc700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f9002ffd700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f90037fe700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f9003fff700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f9020ff9700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f90217fa700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f9021ffb700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f90227fc700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f9022ffd700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f90237fe700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in worker File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f9023fff700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/multiprocessing/pool.py", line 114 in 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"/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Thread 0x00007f90acff9700 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/selectors.py", line 416 in select File "/usr/lib/ucsf-chimerax/lib/python3.9/socketserver.py", line 232 in serve_forever File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/rest_server/server.py", line 79 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/core/tasks.py", line 211 in _run_thread File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 910 in run File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 973 in _bootstrap_inner File "/usr/lib/ucsf-chimerax/lib/python3.9/threading.py", line 930 in _bootstrap Current thread 0x00007f912af42740 (most recent call first): File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/open_command/dialog.py", line 135 in show_open_file_dialog File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/open_command/dialog.py", line 107 in File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init File "/usr/lib/ucsf-chimerax/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in File "/usr/lib/ucsf-chimerax/lib/python3.9/runpy.py", line 87 in _run_code File "/usr/lib/ucsf-chimerax/lib/python3.9/runpy.py", line 197 in _run_module_as_main ===== Log before crash start ===== > remotecontrol rest start port 53394 UCSF ChimeraX version: 1.4 (2022-06-03) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX REST server started on host 127.0.0.1 port 53394 Visit http://127.0.0.1:53394/cmdline.html for CLI interface ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.4 (2022-06-03) © 2016-2022 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 3.3.0 NVIDIA 525.125.06 OpenGL renderer: NVIDIA RTX A5000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.9.11 Locale: de_AT.UTF-8 Qt version: PyQt6 6.3.0, Qt 6.3.0 Qt runtime version: 6.3.0 Qt platform: xcb XDG_SESSION_TYPE=x11 DESKTOP_SESSION=mate XDG_SESSION_DESKTOP=mate XDG_CURRENT_DESKTOP=MATE DISPLAY=:0 Manufacturer: Dell Inc. Model: Precision 7920 Tower OS: Ubuntu 20.04 focal Architecture: 64bit ELF Virtual Machine: none CPU: 64 Intel(R) Xeon(R) Silver 4216 CPU @ 2.10GHz Cache Size: 22528 KB Memory: total used free shared buff/cache available Mem: 125Gi 16Gi 103Gi 476Mi 5.5Gi 107Gi Swap: 2.0Gi 709Mi 1.3Gi Graphics: 0000:73:00.0 VGA compatible controller [0300]: NVIDIA Corporation Device [10de:2231] (rev a1) Subsystem: Dell Device [1028:147e] Kernel driver in use: nvidia Installed Packages: alabaster: 0.7.12 appdirs: 1.4.4 Babel: 2.10.1 backcall: 0.2.0 blockdiag: 3.0.0 certifi: 2022.5.18.1 cftime: 1.6.0 charset-normalizer: 2.0.12 ChimeraX-AddCharge: 1.2.3 ChimeraX-AddH: 2.1.11 ChimeraX-AlignmentAlgorithms: 2.0 ChimeraX-AlignmentHdrs: 3.2.1 ChimeraX-AlignmentMatrices: 2.0 ChimeraX-Alignments: 2.4.3 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.0.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.0 ChimeraX-Atomic: 1.39.1 ChimeraX-AtomicLibrary: 7.0 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.1 ChimeraX-BasicActions: 1.1 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.1.1 ChimeraX-BondRot: 2.0 ChimeraX-BugReporter: 1.0 ChimeraX-BuildStructure: 2.7 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.1 ChimeraX-ButtonPanel: 1.0 ChimeraX-CageBuilder: 1.0 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.2 ChimeraX-ChemGroup: 2.0 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.1 ChimeraX-CommandLine: 1.2.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0 ChimeraX-Core: 1.4 ChimeraX-CoreFormats: 1.1 ChimeraX-coulombic: 1.3.2 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0 ChimeraX-DataFormats: 1.2.2 ChimeraX-Dicom: 1.1 ChimeraX-DistMonitor: 1.1.5 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ExperimentalCommands: 1.0 ChimeraX-FileHistory: 1.0 ChimeraX-FunctionKey: 1.0 ChimeraX-Geometry: 1.2 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1 ChimeraX-Hbonds: 2.1.2 ChimeraX-Help: 1.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0 ChimeraX-Label: 1.1.1 ChimeraX-LinuxSupport: 1.0 ChimeraX-ListInfo: 1.1.1 ChimeraX-Log: 1.1.5 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.8.1 ChimeraX-Map: 1.1 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0 ChimeraX-MapFilter: 2.0 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1 ChimeraX-Markers: 1.0 ChimeraX-Mask: 1.0 ChimeraX-MatchMaker: 2.0.6 ChimeraX-MDcrds: 2.6 ChimeraX-MedicalToolbar: 1.0.1 ChimeraX-Meeting: 1.0 ChimeraX-MLP: 1.1 ChimeraX-mmCIF: 2.7 ChimeraX-MMTF: 2.1 ChimeraX-Modeller: 1.5.5 ChimeraX-ModelPanel: 1.3.2 ChimeraX-ModelSeries: 1.0 ChimeraX-Mol2: 2.0 ChimeraX-Morph: 1.0 ChimeraX-MouseModes: 1.1 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nucleotides: 2.0.2 ChimeraX-OpenCommand: 1.9 ChimeraX-PDB: 2.6.6 ChimeraX-PDBBio: 1.0 ChimeraX-PDBLibrary: 1.0.2 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1 ChimeraX-PubChem: 2.1 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1 ChimeraX-RemoteControl: 1.0 ChimeraX-ResidueFit: 1.0 ChimeraX-RestServer: 1.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 2.0.1 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.6 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0 ChimeraX-Shortcuts: 1.1 ChimeraX-ShowAttr: 1.0 ChimeraX-ShowSequences: 1.0 ChimeraX-SideView: 1.0 ChimeraX-Smiles: 2.1 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.8 ChimeraX-STL: 1.0 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.0.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0 ChimeraX-SwapAA: 2.0 ChimeraX-SwapRes: 2.1.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.1 ChimeraX-ToolshedUtils: 1.2.1 ChimeraX-Tug: 1.0 ChimeraX-UI: 1.18.3 ChimeraX-uniprot: 2.2 ChimeraX-UnitCell: 1.0 ChimeraX-ViewDockX: 1.1.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0 ChimeraX-WebServices: 1.1.0 ChimeraX-Zone: 1.0 colorama: 0.4.4 cxservices: 1.2 cycler: 0.11.0 Cython: 0.29.26 debugpy: 1.6.0 decorator: 5.1.1 distro: 1.6.0 docutils: 0.17.1 entrypoints: 0.4 filelock: 3.4.2 fonttools: 4.33.3 funcparserlib: 1.0.0 grako: 3.16.5 h5py: 3.7.0 html2text: 2020.1.16 idna: 3.3 ihm: 0.27 imagecodecs: 2021.11.20 imagesize: 1.3.0 ipykernel: 6.6.1 ipython: 7.31.1 ipython-genutils: 0.2.0 jedi: 0.18.1 Jinja2: 3.0.3 jupyter-client: 7.1.0 jupyter-core: 4.10.0 kiwisolver: 1.4.2 line-profiler: 3.4.0 lxml: 4.7.1 lz4: 3.1.10 MarkupSafe: 2.1.1 matplotlib: 3.5.1 matplotlib-inline: 0.1.3 msgpack: 1.0.3 nest-asyncio: 1.5.5 netCDF4: 1.5.8 networkx: 2.6.3 numexpr: 2.8.1 numpy: 1.22.1 openvr: 1.16.802 packaging: 21.3 ParmEd: 3.4.3 parso: 0.8.3 pexpect: 4.8.0 pickleshare: 0.7.5 Pillow: 9.0.1 pip: 21.3.1 pkginfo: 1.8.2 prompt-toolkit: 3.0.29 psutil: 5.9.0 ptyprocess: 0.7.0 pycollada: 0.7.2 pydicom: 2.2.2 Pygments: 2.11.2 PyOpenGL: 3.1.5 PyOpenGL-accelerate: 3.1.5 pyparsing: 3.0.9 PyQt6-commercial: 6.3.0 PyQt6-Qt6: 6.3.0 PyQt6-sip: 13.3.1 PyQt6-WebEngine-commercial: 6.3.0 PyQt6-WebEngine-Qt6: 6.3.0 python-dateutil: 2.8.2 pytz: 2022.1 pyzmq: 23.1.0 qtconsole: 5.3.0 QtPy: 2.1.0 RandomWords: 0.3.0 requests: 2.27.1 scipy: 1.7.3 setuptools: 59.8.0 sfftk-rw: 0.7.2 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 Sphinx: 4.3.2 sphinx-autodoc-typehints: 1.15.2 sphinxcontrib-applehelp: 1.0.2 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.2 sphinxcontrib-htmlhelp: 2.0.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.3 sphinxcontrib-serializinghtml: 1.1.5 suds-community: 1.0.0 tables: 3.7.0 tifffile: 2021.11.2 tinyarray: 1.2.4 tornado: 6.1 traitlets: 5.1.1 urllib3: 1.26.9 wcwidth: 0.2.5 webcolors: 1.11.1 wheel: 0.37.1 wheel-filename: 1.3.0
Change History (5)
comment:1 by , 2 years ago
Component: | Unassigned → Input/Output |
---|---|
Owner: | set to |
Platform: | → all |
Project: | → ChimeraX |
Status: | new → accepted |
Summary: | ChimeraX bug report submission → Crash using open/save dialog |
comment:2 by , 2 years ago
Status: | accepted → feedback |
---|
comment:3 by , 2 years ago
Hi Eric, thanks for your reply. ChimeraX was invoked by the Phenix GUI. Does this involve the remotecontrol command? I did not see the diologue window. Another instance running independently works perfect. Best, Clemens ________________________________ Von: ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu> Gesendet: Dienstag, 29. August 2023 18:31:18 An: clemens.grimm@uni-wuerzburg.de; pett@cgl.ucsf.edu Betreff: [EXT] Re: [ChimeraX] #9657: Crash using open/save dialog #9657: Crash using open/save dialog --------------------------------------+---------------------- Reporter: clemens.grimm@… | Owner: pett Type: defect | Status: feedback Priority: normal | Milestone: Component: Input/Output | Version: Resolution: | Keywords: Blocked By: | Blocking: Notify when closed: | Platform: all Project: ChimeraX | --------------------------------------+---------------------- Changes (by pett): * status: accepted => feedback Comment: Hi Clemens, It looks like you run the remotecontrol command, and then use the File→Open dialog which results in a crash. Does the File→Open dialog come up? Are you doing something specific in the dialog when the crash occurs? --Eric Eric Pettersen UCSF Computer Graphics Lab -- Ticket URL: <https://www.rbvi.ucsf.edu/trac/ChimeraX/ticket/9657#comment:2> ChimeraX <https://www.rbvi.ucsf.edu/chimerax/> ChimeraX Issue Tracker
comment:4 by , 2 years ago
I see. Phenix issues the remotecontrol command in order to inform ChimeraX about things you do in Phenix. Using build 5058 of the Phenix 1.21 release candidate on my Mac and the ChimeraX daily build, I did not get a crash with the File→Open dialog. I'll try again Thursday when I have access to a Linux box at work.
--Eric
comment:5 by , 2 years ago
Using ChimeraX 1.6.1 on an Ubuntu 22.04 box at work, and the same version of Phenix as before, I was able to use the File→Open dialog without issue. Maybe you could try upgrading to 1.6.1? Also, what flavor/version of Linux are you using and which version of Phenix?
--Eric
Hi Clemens,
--Eric