![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 2 years ago
Closed 2 years ago
#9655 closed defect (duplicate)
Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0
| Reported by: | Owned by: | Eric Pettersen | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Window Toolkit | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-13.5-arm64-arm-64bit
ChimeraX Version: 1.6 (2023-03-23 07:59:11 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x0000000204392080 (most recent call first):
File "/Applications/ChimeraX-1.6.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 284 in event_loop
File "/Applications/ChimeraX-1.6.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 892 in init
File "/Applications/ChimeraX-1.6.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/__main__.py", line 1043 in
File "/Applications/ChimeraX-1.6.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.6.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
{"app_name":"ChimeraX","timestamp":"2023-08-28 20:15:07.00 -0400","app_version":"1.6.0","slice_uuid":"a5992708-d5b4-36ec-ac0a-e525f6105b56","build_version":"1.6.0.0","platform":1,"bundleID":"edu.ucsf.cgl.ChimeraX","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS 13.5 (22G74)","roots_installed":0,"name":"ChimeraX","incident_id":"F2A8E741-DD3E-49F4-A6BA-4037B62BDD41"}
{
"uptime" : 430000,
"procRole" : "Background",
"version" : 2,
"userID" : 1195785599,
"deployVersion" : 210,
"modelCode" : "Mac14,5",
"coalitionID" : 19447,
"osVersion" : {
"train" : "macOS 13.5",
"build" : "22G74",
"releaseType" : "User"
},
"captureTime" : "2023-08-28 20:14:56.2343 -0400",
"incident" : "F2A8E741-DD3E-49F4-A6BA-4037B62BDD41",
"pid" : 80347,
"translated" : false,
"cpuType" : "ARM-64",
"roots_installed" : 0,
"bug_type" : "309",
"procLaunch" : "2023-08-17 10:47:57.1630 -0400",
"procStartAbsTime" : 2412236487466,
"procExitAbsTime" : 10432316187361,
"procName" : "ChimeraX",
"procPath" : "\/Applications\/ChimeraX-1.6.app\/Contents\/MacOS\/ChimeraX",
"bundleInfo" : {"CFBundleShortVersionString":"1.6.0","CFBundleVersion":"1.6.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
"storeInfo" : {"deviceIdentifierForVendor":"5D7F61D5-4358-59F6-8958-D2D0504A73D5","thirdParty":true},
"parentProc" : "launchd",
"parentPid" : 1,
"coalitionName" : "edu.ucsf.cgl.ChimeraX",
"crashReporterKey" : "AAE09EAA-E991-08DE-E25C-56BCD904E286",
"codeSigningID" : "edu.ucsf.cgl.ChimeraX",
"codeSigningTeamID" : "LWV8X224YF",
"codeSigningFlags" : 570491649,
"codeSigningValidationCategory" : 6,
"codeSigningTrustLevel" : 0,
"wakeTime" : 5,
"sleepWakeUUID" : "7722D4FF-282D-40FF-ABD1-7266A09A3A27",
"sip" : "enabled",
"vmRegionInfo" : "0x18 is not in any region. Bytes before following region: 105554055790568\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600038000000-600040000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
"exception" : {"codes":"0x0000000000000001, 0x0000000000000018","rawCodes":[1,24],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS at 0x0000000000000018"},
"termination" : {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault: 11","byProc":"ChimeraX","byPid":80347},
"vmregioninfo" : "0x18 is not in any region. Bytes before following region: 105554055790568\n REGION TYPE START - END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT START\n---> \n MALLOC_NANO (reserved) 600038000000-600040000000 [128.0M] rw-\/rwx SM=NUL ...(unallocated)",
"extMods" : {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
"faultingThread" : 0,
"threads" : [{"triggered":true,"id":1903023,"threadState":{"x":[{"value":0},{"value":0},{"value":1},{"value":7133707693},{"value":6167901800},{"value":9983596656263545615},{"value":0},{"value":6167899688},{"value":673531937880896162},{"value":673531929227448866},{"value":78},{"value":0},{"value":49},{"value":18},{"value":4394582016},{"value":378077183},{"value":328},{"value":8739582880},{"value":0},{"value":11},{"value":8660787328,"symbolLocation":0,"symbol":"_main_thread"},{"value":259},{"value":8660787552,"symbolLocation":224,"symbol":"_main_thread"},{"value":4545797392},{"value":1},{"value":32769},{"value":32768},{"value":8660793760,"symbolLocation":0,"symbol":"_NSConcreteStackBlock"},{"value":0}],"flavor":"ARM_THREAD_STATE64","lr":{"value":7133527080},"cpsr":{"value":1073745920},"fp":{"value":6167901600},"sp":{"value":6167901568},"esr":{"value":1442840704,"description":" Address size fault"},"pc":{"value":7133300580,"matchesCrashFrame":1},"far":{"value":4303550928}},"name":"CrBrowserMain","queue":"com.apple.main-thread","frames":[{"imageOffset":38756,"symbol":"__pthread_kill","symbolLocation":8,"imageIndex":152},{"imageOffset":27688,"symbol":"pthread_kill","symbolLocation":288,"imageIndex":153},{"imageOffset":259180,"symbol":"raise","symbolLocation":32,"imageIndex":154},{"imageOffset":14884,"symbol":"_sigtramp","symbolLocation":56,"imageIndex":155},{"imageOffset":3459388,"symbol":"QMacCGContext::QMacCGContext(QPainter*)","symbolLocation":40,"imageIndex":48},{"imageOffset":43052,"imageIndex":69},{"imageOffset":73708,"imageIndex":69},{"imageOffset":464432,"symbol":"QCommonStyle::drawControl(QStyle::ControlElement, QStyleOption const*, QPainter*, QWidget const*) const","symbolLocation":2132,"imageIndex":47},{"imageOffset":63388,"imageIndex":69},{"imageOffset":710016,"imageIndex":47},{"imageOffset":1933144,"symbol":"QTabBar::paintEvent(QPaintEvent*)","symbolLocation":1584,"imageIndex":47},{"imageOffset":344492,"symbol":"QWidget::event(QEvent*)","symbolLocation":132,"imageIndex":47},{"imageOffset":1931192,"symbol":"QTabBar::event(QEvent*)","symbolLocation":736,"imageIndex":47},{"imageOffset":42768,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":272,"imageIndex":47},{"imageOffset":49644,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":3396,"imageIndex":47},{"imageOffset":1427128,"symbol":"sipQApplication::notify(QObject*, QEvent*)","symbolLocation":248,"imageIndex":46},{"imageOffset":429724,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":292,"imageIndex":44},{"imageOffset":291900,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":3312,"imageIndex":47},{"imageOffset":322252,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":864,"imageIndex":47},{"imageOffset":292156,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":3568,"imageIndex":47},{"imageOffset":322252,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":864,"imageIndex":47},{"imageOffset":292156,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":3568,"imageIndex":47},{"imageOffset":322252,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":864,"imageIndex":47},{"imageOffset":292156,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":3568,"imageIndex":47},{"imageOffset":322252,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":864,"imageIndex":47},{"imageOffset":292156,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":3568,"imageIndex":47},{"imageOffset":322252,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":864,"imageIndex":47},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":47},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":47},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":47},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":47},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":47},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":47},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":47},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":47},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":47},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":47},{"imageOffset":321980,"symbol":"QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList const&, int, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":592,"imageIndex":47},{"imageOffset":292156,"symbol":"QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags, QPainter*, QWidgetRepaintManager*)","symbolLocation":3568,"imageIndex":47},{"imageOffset":413000,"symbol":"QWidgetRepaintManager::paintAndFlush()","symbolLocation":3904,"imageIndex":47},{"imageOffset":413644,"symbol":"QWidgetRepaintManager::sync()","symbolLocation":252,"imageIndex":47},{"imageOffset":345676,"symbol":"QWidget::event(QEvent*)","symbolLocation":1316,"imageIndex":47},{"imageOffset":1508896,"symbol":"QMainWindow::event(QEvent*)","symbolLocation":248,"imageIndex":47},{"imageOffset":684736,"symbol":"sipQMainWindow::event(QEvent*)","symbolLocation":224,"imageIndex":46},{"imageOffset":42768,"symbol":"QApplicationPrivate::notify_helper(QObject*, QEvent*)","symbolLocation":272,"imageIndex":47},{"imageOffset":49644,"symbol":"QApplication::notify(QObject*, QEvent*)","symbolLocation":3396,"imageIndex":47},{"imageOffset":1427128,"symbol":"sipQApplication::notify(QObject*, QEvent*)","symbolLocation":248,"imageIndex":46},{"imageOffset":429724,"symbol":"QCoreApplication::notifyInternal2(QObject*, QEvent*)","symbolLocation":292,"imageIndex":44},{"imageOffset":399932,"symbol":"QWidgetRepaintManager::sendUpdateRequest(QWidget*, QWidgetRepaintManager::UpdateTime)","symbolLocation":604,"imageIndex":47},{"imageOffset":399228,"symbol":"void QWidgetRepaintManager::markDirty(QRect const&, QWidget*, QWidgetRepaintManager::UpdateTime, QWidgetRepaintManager::BufferState)","symbolLocation":1748,"imageIndex":47},{"imageOffset":438296,"imageIndex":47},{"imageOffset":730904,"imageIndex":44},{"imageOffset":812196,"symbol":"QWindowPrivate::emitScreenChangedRecursion(QScreen*)","symbolLocation":80,"imageIndex":48},{"imageOffset":770088,"symbol":"QScreen::~QScreen()","symbolLocation":700,"imageIndex":48},{"imageOffset":770192,"symbol":"QScreen::~QScreen()","symbolLocation":12,"imageIndex":48},{"imageOffset":854364,"symbol":"QWindowSystemInterface::handleScreenRemoved(QPlatformScreen*)","symbolLocation":36,"imageIndex":48},{"imageOffset":195752,"imageIndex":67},{"imageOffset":189688,"imageIndex":67},{"imageOffset":274400,"imageIndex":67},{"imageOffset":490932,"symbol":"QMetaMethod::invoke(QObject*, Qt::ConnectionType, QGenericReturnArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument, QGenericArgument) const","symbolLocation":1072,"imageIndex":44},{"imageOffset":287828,"imageIndex":67},{"imageOffset":475500,"symbol":"__CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__","symbolLocation":128,"imageIndex":156},{"imageOffset":1113836,"symbol":"___CFXRegistrationPost_block_invoke","symbolLocation":88,"imageIndex":156},{"imageOffset":1113652,"symbol":"_CFXRegistrationPost","symbolLocation":440,"imageIndex":156},{"imageOffset":283852,"symbol":"_CFXNotificationPost","symbolLocation":704,"imageIndex":156},{"imageOffset":39140,"symbol":"-[NSNotificationCenter postNotificationName:object:userInfo:]","symbolLocation":88,"imageIndex":157},{"imageOffset":2101064,"symbol":"__67-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]_block_invoke","symbolLocation":496,"imageIndex":158},{"imageOffset":512560,"symbol":"NSPerformVisuallyAtomicChange","symbolLocation":108,"imageIndex":158},{"imageOffset":2100556,"symbol":"-[NSWindow _updateSettingsSendingScreenChangeNotificationToScreen:]","symbolLocation":96,"imageIndex":158},{"imageOffset":3414552,"symbol":"-[NSWindow _screenChanged:]","symbolLocation":136,"imageIndex":158},{"imageOffset":3414384,"symbol":"-[NSWindow _displayChangedSoAdjustWindows:]","symbolLocation":112,"imageIndex":158},{"imageOffset":10154844,"symbol":"-[_NSFullScreenContentController displayChanged]","symbolLocation":28,"imageIndex":158},{"imageOffset":10827476,"symbol":"-[_NSFullScreenSpace displayChanged]","symbolLocation":48,"imageIndex":158},{"imageOffset":10822564,"symbol":"_fullScreenInstanceMovedSpaces","symbolLocation":208,"imageIndex":158},{"imageOffset":44492,"symbol":"(anonymous namespace)::notify_datagram_handler(unsigned int, CGSDatagramType, void*, unsigned long, void*)","symbolLocation":888,"imageIndex":159},{"imageOffset":3461824,"symbol":"CGSDatagramReadStream::dispatchMainQueueDatagrams()","symbolLocation":228,"imageIndex":159},{"imageOffset":3461564,"symbol":"invocation function for block in CGSDatagramReadStream::mainQueueWakeup()","symbolLocation":28,"imageIndex":159},{"imageOffset":10356,"symbol":"_dispatch_call_block_and_release","symbolLocation":32,"imageIndex":160},{"imageOffset":17408,"symbol":"_dispatch_client_callout","symbolLocation":20,"imageIndex":160},{"imageOffset":76792,"symbol":"_dispatch_main_queue_drain","symbolLocation":928,"imageIndex":160},{"imageOffset":75848,"symbol":"_dispatch_main_queue_callback_4CF","symbolLocation":44,"imageIndex":160},{"imageOffset":789588,"symbol":"__CFRUNLOOP_IS_SERVICING_THE_MAIN_DISPATCH_QUEUE__","symbolLocation":16,"imageIndex":156},{"imageOffset":517076,"symbol":"__CFRunLoopRun","symbolLocation":1992,"imageIndex":156},{"imageOffset":513208,"symbol":"CFRunLoopRunSpecific","symbolLocation":612,"imageIndex":156},{"imageOffset":200176,"symbol":"RunCurrentEventLoopInMode","symbolLocation":292,"imageIndex":161},{"imageOffset":199724,"symbol":"ReceiveNextEventCommon","symbolLocation":648,"imageIndex":161},{"imageOffset":199044,"symbol":"_BlockUntilNextEventMatchingListInModeWithFilter","symbolLocation":76,"imageIndex":161},{"imageOffset":235900,"symbol":"_DPSNextEvent","symbolLocation":636,"imageIndex":158},{"imageOffset":232216,"symbol":"-[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:]","symbolLocation":716,"imageIndex":158},{"imageOffset":184188,"symbol":"-[NSApplication run]","symbolLocation":464,"imageIndex":158},{"imageOffset":86032,"imageIndex":67},{"imageOffset":467648,"symbol":"QEventLoop::exec(QFlags)","symbolLocation":532,"imageIndex":44},{"imageOffset":431416,"symbol":"QCoreApplication::exec()","symbolLocation":128,"imageIndex":44},{"imageOffset":2498220,"symbol":"meth_QApplication_exec(_object*, _object*)","symbolLocation":96,"imageIndex":46},{"imageOffset":553436,"symbol":"cfunction_call","symbolLocation":172,"imageIndex":1},{"imageOffset":280688,"symbol":"_PyObject_MakeTpCall","symbolLocation":360,"imageIndex":1},{"imageOffset":1158088,"symbol":"call_function","symbolLocation":512,"imageIndex":1},{"imageOffset":1147400,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":23108,"imageIndex":1},{"imageOffset":282620,"symbol":"function_code_fastcall","symbolLocation":112,"imageIndex":1},{"imageOffset":290656,"symbol":"method_vectorcall","symbolLocation":168,"imageIndex":1},{"imageOffset":1157992,"symbol":"call_function","symbolLocation":416,"imageIndex":1},{"imageOffset":1147400,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":23108,"imageIndex":1},{"imageOffset":1161872,"symbol":"_PyEval_EvalCode","symbolLocation":2988,"imageIndex":1},{"imageOffset":282496,"symbol":"_PyFunction_Vectorcall","symbolLocation":256,"imageIndex":1},{"imageOffset":1157992,"symbol":"call_function","symbolLocation":416,"imageIndex":1},{"imageOffset":1147524,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":23232,"imageIndex":1},{"imageOffset":1161872,"symbol":"_PyEval_EvalCode","symbolLocation":2988,"imageIndex":1},{"imageOffset":1124092,"symbol":"PyEval_EvalCode","symbolLocation":80,"imageIndex":1},{"imageOffset":1111204,"symbol":"builtin_exec","symbolLocation":672,"imageIndex":1},{"imageOffset":551308,"symbol":"cfunction_vectorcall_FASTCALL","symbolLocation":232,"imageIndex":1},{"imageOffset":1157992,"symbol":"call_function","symbolLocation":416,"imageIndex":1},{"imageOffset":1147524,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":23232,"imageIndex":1},{"imageOffset":1161872,"symbol":"_PyEval_EvalCode","symbolLocation":2988,"imageIndex":1},{"imageOffset":282496,"symbol":"_PyFunction_Vectorcall","symbolLocation":256,"imageIndex":1},{"imageOffset":1157992,"symbol":"call_function","symbolLocation":416,"imageIndex":1},{"imageOffset":1147524,"symbol":"_PyEval_EvalFrameDefault","symbolLocation":23232,"imageIndex":1},{"imageOffset":1161872,"symbol":"_PyEval_EvalCode","symbolLocation":2988,"imageIndex":1},{"imageOffset":282496,"symbol":"_PyFunction_Vectorcall","symbolLocation":256,"imageIndex":1},{"imageOffset":1531556,"symbol":"pymain_run_module","symbolLocation":200,"imageIndex":1},{"imageOffset":1529064,"symbol":"Py_RunMain","symbolLocation":764,"imageIndex":1},{"imageOffset":1531220,"symbol":"pymain_main","symbolLocation":340,"imageIndex":1},{"imageOffset":1530868,"symbol":"Py_Main","symbolLocation":36,"imageIndex":1},{"imageOffset":15700,"symbol":"main","symbolLocation":128,"imageIndex":0},{"imageOffset":24360,"symbol":"start","symbolLocation":2236,"imageIndex":162}]},{"id":1903156,"name":"ThreadPoolServiceThread","frames":[{"imageOffset":52776,"symbol":"kevent64","symbolLocation":8,"imageIndex":152},{"imageOffset":62151504,"imageIndex":54},{"imageOffset":62151152,"imageIndex":54},{"imageOffset":61790700,"imageIndex":54},{"imageOffset":61535376,"imageIndex":54},{"imageOffset":61932820,"imageIndex":54},{"imageOffset":61835128,"imageIndex":54},{"imageOffset":61933196,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903159,"name":"Chrome_IOThread","frames":[{"imageOffset":52776,"symbol":"kevent64","symbolLocation":8,"imageIndex":152},{"imageOffset":62151504,"imageIndex":54},{"imageOffset":62151152,"imageIndex":54},{"imageOffset":61790700,"imageIndex":54},{"imageOffset":61535376,"imageIndex":54},{"imageOffset":61932820,"imageIndex":54},{"imageOffset":25214976,"imageIndex":54},{"imageOffset":61933196,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903160,"name":"NetworkConfigWatcher","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":62126188,"imageIndex":54},{"imageOffset":62125656,"imageIndex":54},{"imageOffset":61342164,"imageIndex":54},{"imageOffset":61790700,"imageIndex":54},{"imageOffset":61535376,"imageIndex":54},{"imageOffset":61932820,"imageIndex":54},{"imageOffset":61933196,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903164,"name":"Chrome_InProcGpuThread","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":62126188,"imageIndex":54},{"imageOffset":62125656,"imageIndex":54},{"imageOffset":61342164,"imageIndex":54},{"imageOffset":61790700,"imageIndex":54},{"imageOffset":61535376,"imageIndex":54},{"imageOffset":61932820,"imageIndex":54},{"imageOffset":61933196,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903165,"name":"Chrome_ChildIOThread","frames":[{"imageOffset":52776,"symbol":"kevent64","symbolLocation":8,"imageIndex":152},{"imageOffset":62151504,"imageIndex":54},{"imageOffset":62151152,"imageIndex":54},{"imageOffset":61790700,"imageIndex":54},{"imageOffset":61535376,"imageIndex":54},{"imageOffset":61932820,"imageIndex":54},{"imageOffset":102133716,"imageIndex":54},{"imageOffset":61933196,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903166,"name":"CompositorTileWorker1","frames":[{"imageOffset":18256,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30068,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":153},{"imageOffset":62096196,"imageIndex":54},{"imageOffset":92829352,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903167,"name":"ThreadPoolSingleThreadSharedForeground0","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":62126188,"imageIndex":54},{"imageOffset":61883116,"imageIndex":54},{"imageOffset":61885944,"imageIndex":54},{"imageOffset":61884860,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903168,"name":"NetworkConfigWatcher","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":62126188,"imageIndex":54},{"imageOffset":62125656,"imageIndex":54},{"imageOffset":61342164,"imageIndex":54},{"imageOffset":61790700,"imageIndex":54},{"imageOffset":61535376,"imageIndex":54},{"imageOffset":61932820,"imageIndex":54},{"imageOffset":61933196,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903170,"name":"VizCompositorThread","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":62126188,"imageIndex":54},{"imageOffset":61342064,"imageIndex":54},{"imageOffset":61790700,"imageIndex":54},{"imageOffset":61535376,"imageIndex":54},{"imageOffset":61932820,"imageIndex":54},{"imageOffset":61933196,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903171,"name":"NetworkService","frames":[{"imageOffset":52776,"symbol":"kevent64","symbolLocation":8,"imageIndex":152},{"imageOffset":62151504,"imageIndex":54},{"imageOffset":62151152,"imageIndex":54},{"imageOffset":61790700,"imageIndex":54},{"imageOffset":61535376,"imageIndex":54},{"imageOffset":61932820,"imageIndex":54},{"imageOffset":61933196,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903172,"name":"NetworkConfigWatcher","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":62126188,"imageIndex":54},{"imageOffset":62125656,"imageIndex":54},{"imageOffset":61342164,"imageIndex":54},{"imageOffset":61790700,"imageIndex":54},{"imageOffset":61535376,"imageIndex":54},{"imageOffset":61932820,"imageIndex":54},{"imageOffset":61933196,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903173,"name":"ThreadPoolSingleThreadForegroundBlocking1","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":62126188,"imageIndex":54},{"imageOffset":61883116,"imageIndex":54},{"imageOffset":61885944,"imageIndex":54},{"imageOffset":61884904,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903198,"name":"NetworkConfigWatcher","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":62126188,"imageIndex":54},{"imageOffset":62125656,"imageIndex":54},{"imageOffset":61342164,"imageIndex":54},{"imageOffset":61790700,"imageIndex":54},{"imageOffset":61535376,"imageIndex":54},{"imageOffset":61932820,"imageIndex":54},{"imageOffset":61933196,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903213,"name":"com.apple.NSEventThread","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":522212,"symbol":"__CFRunLoopServiceMachPort","symbolLocation":160,"imageIndex":156},{"imageOffset":516292,"symbol":"__CFRunLoopRun","symbolLocation":1208,"imageIndex":156},{"imageOffset":513208,"symbol":"CFRunLoopRunSpecific","symbolLocation":612,"imageIndex":156},{"imageOffset":1458004,"symbol":"_NSEventThread","symbolLocation":172,"imageIndex":158},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903255,"name":"MemoryInfra","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":62126188,"imageIndex":54},{"imageOffset":62125656,"imageIndex":54},{"imageOffset":61342164,"imageIndex":54},{"imageOffset":61790700,"imageIndex":54},{"imageOffset":61535376,"imageIndex":54},{"imageOffset":61932820,"imageIndex":54},{"imageOffset":61933196,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":1903256,"name":"ThreadPoolSingleThreadSharedBackgroundBlocking2","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":62126188,"imageIndex":54},{"imageOffset":61883116,"imageIndex":54},{"imageOffset":61885188,"imageIndex":54},{"imageOffset":61884728,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9245568,"frames":[{"imageOffset":18256,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30068,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":153},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":17},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9245569,"frames":[{"imageOffset":18256,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30068,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":153},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":17},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9245570,"frames":[{"imageOffset":18256,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30068,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":153},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":17},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9245571,"frames":[{"imageOffset":18256,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30068,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":153},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":17},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9245572,"frames":[{"imageOffset":18256,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30068,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":153},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":17},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9245573,"frames":[{"imageOffset":18256,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30068,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":153},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":17},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9245574,"frames":[{"imageOffset":18256,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30068,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":153},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":17},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9245575,"frames":[{"imageOffset":18256,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30068,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":153},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":17},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9245576,"frames":[{"imageOffset":18256,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30068,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":153},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":17},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9245577,"frames":[{"imageOffset":18256,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30068,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":153},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":17},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9245578,"frames":[{"imageOffset":18256,"symbol":"__psynch_cvwait","symbolLocation":8,"imageIndex":152},{"imageOffset":30068,"symbol":"_pthread_cond_wait","symbolLocation":1232,"imageIndex":153},{"imageOffset":1481568,"symbol":"blas_thread_server","symbolLocation":360,"imageIndex":17},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9425784,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":62126188,"imageIndex":54},{"imageOffset":61883116,"imageIndex":54},{"imageOffset":61885944,"imageIndex":54},{"imageOffset":61884684,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9436359,"name":"ThreadPoolForegroundWorker","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":62126188,"imageIndex":54},{"imageOffset":61883116,"imageIndex":54},{"imageOffset":61885944,"imageIndex":54},{"imageOffset":61884816,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9680970,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9738132,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9748622,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9786196,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9793290,"queue":"com.apple.opengl.cvmDoWork","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":129528,"symbol":"_dispatch_mach_send_and_wait_for_reply","symbolLocation":548,"imageIndex":160},{"imageOffset":130440,"symbol":"dispatch_mach_send_with_result_and_wait_for_reply","symbolLocation":60,"imageIndex":160},{"imageOffset":48188,"symbol":"xpc_connection_send_message_with_reply_sync","symbolLocation":264,"imageIndex":163},{"imageOffset":7712,"symbol":"cvms_element_build_and_get_internal","symbolLocation":256,"imageIndex":164},{"imageOffset":7416,"symbol":"cvm_deferred_build_modular(void*)","symbolLocation":408,"imageIndex":165},{"imageOffset":17408,"symbol":"_dispatch_client_callout","symbolLocation":20,"imageIndex":160},{"imageOffset":47752,"symbol":"_dispatch_lane_serial_drain","symbolLocation":668,"imageIndex":160},{"imageOffset":50680,"symbol":"_dispatch_lane_invoke","symbolLocation":384,"imageIndex":160},{"imageOffset":94788,"symbol":"_dispatch_workloop_worker_thread","symbolLocation":648,"imageIndex":160},{"imageOffset":12404,"symbol":"_pthread_wqthread","symbolLocation":288,"imageIndex":153},{"imageOffset":7572,"symbol":"start_wqthread","symbolLocation":8,"imageIndex":153}]},{"id":9794525,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9794526,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9794849,"name":"ThreadPoolBackgroundWorker","frames":[{"imageOffset":3924,"symbol":"mach_msg2_trap","symbolLocation":8,"imageIndex":152},{"imageOffset":78464,"symbol":"mach_msg2_internal","symbolLocation":80,"imageIndex":152},{"imageOffset":39864,"symbol":"mach_msg_overwrite","symbolLocation":604,"imageIndex":152},{"imageOffset":4816,"symbol":"mach_msg","symbolLocation":24,"imageIndex":152},{"imageOffset":62126188,"imageIndex":54},{"imageOffset":61883116,"imageIndex":54},{"imageOffset":61885188,"imageIndex":54},{"imageOffset":61884684,"imageIndex":54},{"imageOffset":62101416,"imageIndex":54},{"imageOffset":28584,"symbol":"_pthread_start","symbolLocation":148,"imageIndex":153},{"imageOffset":7584,"symbol":"thread_start","symbolLocation":8,"imageIndex":153}]},{"id":9794850,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9794955,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9794956,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9794957,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9794958,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9794959,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9794960,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9794961,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9794963,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9794964,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]},{"id":9794966,"frames":[{"imageOffset":7564,"symbol":"start_wqthread","symbolLocation":0,"imageIndex":153}]}],
"usedImages" : [
{
"source" : "P",
"arch" : "arm64",
"base" : 4298948608,
"CFBundleShortVersionString" : "1.6.0",
"CFBundleIdentifier" : "edu.ucsf.cgl.ChimeraX",
"size" : 16384,
"uuid" : "a5992708-d5b4-36ec-ac0a-e525f6105b56",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/MacOS\/ChimeraX",
"name" : "ChimeraX",
"CFBundleVersion" : "1.6.0.0"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306862080,
"CFBundleShortVersionString" : "3.9.11, (c) 2001-2021 Python Software Foundation.",
"CFBundleIdentifier" : "org.python.python",
"size" : 2555904,
"uuid" : "5ee765c2-b52f-3980-9781-73db1abd2bde",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/Python",
"name" : "Python",
"CFBundleVersion" : "3.9.11"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4301946880,
"size" : 16384,
"uuid" : "7c48bb52-2d6b-3e26-a51f-6c2a62306335",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_heapq.cpython-39-darwin.so",
"name" : "_heapq.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4301799424,
"size" : 32768,
"uuid" : "1aa5fe59-6d0e-30d4-a9c5-c6ed179cf80c",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/binascii.cpython-39-darwin.so",
"name" : "binascii.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4305371136,
"size" : 32768,
"uuid" : "7b8307ab-d97d-3a6a-afdf-d8c79bdd942c",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/zlib.cpython-39-darwin.so",
"name" : "zlib.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4305469440,
"size" : 16384,
"uuid" : "cbfd2b08-770e-3580-97e0-2daf6461baa8",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_bz2.cpython-39-darwin.so",
"name" : "_bz2.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306108416,
"size" : 196608,
"uuid" : "e1e5848d-f933-3ee9-8beb-6d659173d0a3",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_lzma.cpython-39-darwin.so",
"name" : "_lzma.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4305551360,
"size" : 16384,
"uuid" : "7e70b2d6-dede-31cf-88be-99c0ca47d3d8",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/grp.cpython-39-darwin.so",
"name" : "grp.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4305190912,
"size" : 32768,
"uuid" : "5c775732-b6c5-3893-a6bc-a29b3560786d",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_struct.cpython-39-darwin.so",
"name" : "_struct.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4305895424,
"size" : 49152,
"uuid" : "9d652743-0505-3051-b40c-4449ceb79f5b",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/math.cpython-39-darwin.so",
"name" : "math.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306026496,
"size" : 16384,
"uuid" : "5592bf68-8e5a-3e65-8bdd-e623dae22c34",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_bisect.cpython-39-darwin.so",
"name" : "_bisect.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306534400,
"size" : 16384,
"uuid" : "e27a9387-2920-3f65-92c2-a9c07a5cda1f",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_random.cpython-39-darwin.so",
"name" : "_random.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306386944,
"size" : 16384,
"uuid" : "0a8e0ece-ce43-3bad-9a29-14d9b8c08b73",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_sha512.cpython-39-darwin.so",
"name" : "_sha512.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306747392,
"size" : 16384,
"uuid" : "342ecfe4-85fe-3a35-a5fa-6638ba0da4ce",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/arrays\/_arrays.cpython-39-darwin.so",
"name" : "_arrays.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4312760320,
"size" : 458752,
"uuid" : "349a541d-35e3-33d6-9e97-3b6ac792cdbd",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/arrays\/lib\/libarrays.dylib",
"name" : "libarrays.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4306616320,
"size" : 32768,
"uuid" : "8505c6f7-3f27-3921-98d4-814f56455982",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_json.cpython-39-darwin.so",
"name" : "_json.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4323000320,
"size" : 2654208,
"uuid" : "c2f1d5d6-0c90-30e0-a381-d91c75711f25",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/core\/_multiarray_umath.cpython-39-darwin.so",
"name" : "_multiarray_umath.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4416487424,
"size" : 20709376,
"uuid" : "6b8373ed-7142-34ea-9b4b-9f502e8a6f33",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
"name" : "libopenblas64_.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4316692480,
"size" : 3112960,
"uuid" : "193af507-3eae-3ef7-8934-a1c352b48834",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libgfortran.5.dylib",
"name" : "libgfortran.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4312465408,
"size" : 49152,
"uuid" : "0110c4e2-f1ab-3304-bc10-93e1022cb4b9",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libgcc_s.2.dylib",
"name" : "libgcc_s.2.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4312580096,
"size" : 81920,
"uuid" : "e3bec047-88a6-3f78-a092-8b1069f35fdb",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_datetime.cpython-39-darwin.so",
"name" : "_datetime.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4313661440,
"size" : 98304,
"uuid" : "e19e24ba-e588-3dce-a086-8c56fd71eb01",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_pickle.cpython-39-darwin.so",
"name" : "_pickle.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4316463104,
"size" : 65536,
"uuid" : "fecc801c-9d79-351a-b833-8066018bcefb",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/core\/_multiarray_tests.cpython-39-darwin.so",
"name" : "_multiarray_tests.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4312334336,
"size" : 16384,
"uuid" : "f32bab21-320f-3999-9a9a-d34c2f953c79",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_posixsubprocess.cpython-39-darwin.so",
"name" : "_posixsubprocess.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4319985664,
"size" : 32768,
"uuid" : "ff7d40db-95e6-320a-b57f-faed8f2333d9",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/select.cpython-39-darwin.so",
"name" : "select.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4322754560,
"size" : 81920,
"uuid" : "2c150f5d-6630-3489-8b61-220f8b81a448",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_ctypes.cpython-39-darwin.so",
"name" : "_ctypes.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4394319872,
"size" : 98304,
"uuid" : "18f5e139-b1f9-3180-bf0d-71034335937d",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/linalg\/_umath_linalg.cpython-39-darwin.so",
"name" : "_umath_linalg.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4413472768,
"size" : 65536,
"uuid" : "c60c0689-8417-3601-8328-0a77a72a8031",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/fft\/_pocketfft_internal.cpython-39-darwin.so",
"name" : "_pocketfft_internal.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4415291392,
"size" : 458752,
"uuid" : "146f00bf-a86c-304b-9c61-c6f4f23e8a71",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/mtrand.cpython-39-darwin.so",
"name" : "mtrand.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4414144512,
"size" : 131072,
"uuid" : "664ed8e5-c6fc-3cae-acf5-13a04dc33c9e",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/bit_generator.cpython-39-darwin.so",
"name" : "bit_generator.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4416077824,
"size" : 212992,
"uuid" : "b2392406-be7c-30b3-b00c-dd70dc87d521",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/_common.cpython-39-darwin.so",
"name" : "_common.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4414390272,
"size" : 32768,
"uuid" : "9ed5556a-6dcd-3a65-a517-e4e4b81fb352",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_hashlib.cpython-39-darwin.so",
"name" : "_hashlib.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4414504960,
"size" : 344064,
"uuid" : "dd5422ba-21b8-364c-9a78-827318571a50",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/libssl.1.1.dylib",
"name" : "libssl.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4539842560,
"size" : 1687552,
"uuid" : "e8babe02-f50e-351e-a64c-70fd4c02141d",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/libcrypto.1.1.dylib",
"name" : "libcrypto.1.1.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4414046208,
"size" : 32768,
"uuid" : "0683dfb0-1a27-3bfd-9519-51dbe4d0ad0b",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_blake2.cpython-39-darwin.so",
"name" : "_blake2.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4543152128,
"size" : 311296,
"uuid" : "e75e1ef5-fd95-3b3f-95b1-ff05b418f48d",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/_bounded_integers.cpython-39-darwin.so",
"name" : "_bounded_integers.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4413865984,
"size" : 65536,
"uuid" : "cf1e1002-15f3-3b3c-b0e6-eb5483739413",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/_mt19937.cpython-39-darwin.so",
"name" : "_mt19937.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4415062016,
"size" : 49152,
"uuid" : "8559b659-7fa4-36f6-8d24-03151a863125",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/_philox.cpython-39-darwin.so",
"name" : "_philox.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4542480384,
"size" : 65536,
"uuid" : "4e2a888e-28d4-3e0a-88d2-5ac4f5e85e87",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/_pcg64.cpython-39-darwin.so",
"name" : "_pcg64.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4542627840,
"size" : 32768,
"uuid" : "f44c33eb-068f-39d2-b41e-9cc7ff6ec214",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/_sfc64.cpython-39-darwin.so",
"name" : "_sfc64.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4543578112,
"size" : 557056,
"uuid" : "701ddeb9-64ff-3c78-a162-02ea9251f8c2",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/random\/_generator.cpython-39-darwin.so",
"name" : "_generator.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4415193088,
"size" : 16384,
"uuid" : "cb698a25-6e7e-3d75-851c-fc5fcae677d0",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_opcode.cpython-39-darwin.so",
"name" : "_opcode.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4807655424,
"size" : 114688,
"uuid" : "2886fa8c-67fe-3264-8729-b5c90c269aec",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/geometry\/_geometry.cpython-39-darwin.so",
"name" : "_geometry.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5091885056,
"size" : 1654784,
"uuid" : "61f0bdbb-1502-3ef5-bf0c-da2c568c4193",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtCore.abi3.so",
"name" : "QtCore.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5075107840,
"size" : 4653056,
"uuid" : "8411e169-c5ca-3d70-9962-1ecf4565ae8d",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtCore.framework\/Versions\/A\/QtCore",
"name" : "QtCore"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4807458816,
"size" : 81920,
"uuid" : "3535e26b-2c48-31ff-87bd-7a11a1bb2b2e",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/sip.cpython-39-darwin.so",
"name" : "sip.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5311102976,
"size" : 3080192,
"uuid" : "7665a44d-b6d3-323b-bb24-6ce940fbfbeb",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtWidgets.abi3.so",
"name" : "QtWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5317525504,
"size" : 4538368,
"uuid" : "8969d043-f519-3f5e-8c7b-d70f69867f8b",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWidgets.framework\/Versions\/A\/QtWidgets",
"name" : "QtWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5298503680,
"size" : 6373376,
"uuid" : "e580e17d-2c19-39bf-bdd1-9f96d62b6172",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtGui.framework\/Versions\/A\/QtGui",
"name" : "QtGui"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5082464256,
"size" : 507904,
"uuid" : "e795c30c-73b0-3d7d-9c20-0cde8d11795c",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtDBus.framework\/Versions\/A\/QtDBus",
"name" : "QtDBus"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5095505920,
"size" : 1556480,
"uuid" : "5a3baf61-2631-373d-8faa-f7bdcc4dee4f",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtGui.abi3.so",
"name" : "QtGui.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5307252736,
"size" : 65536,
"uuid" : "672d90f4-f67e-3e52-93ad-9da65bd4284a",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtWebEngineWidgets.abi3.so",
"name" : "QtWebEngineWidgets.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5306925056,
"size" : 81920,
"uuid" : "a1e2479e-285e-348a-b215-186eb398abc0",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineWidgets.framework\/Versions\/A\/QtWebEngineWidgets",
"name" : "QtWebEngineWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5308416000,
"size" : 294912,
"uuid" : "597b5212-6e17-3c77-804d-64b089edd5f8",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtPrintSupport.framework\/Versions\/A\/QtPrintSupport",
"name" : "QtPrintSupport"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 11758551040,
"size" : 154959872,
"uuid" : "1b766dc4-2490-3425-8726-45387675bc14",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebEngineCore.framework\/Versions\/A\/QtWebEngineCore",
"name" : "QtWebEngineCore"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5334450176,
"size" : 3801088,
"uuid" : "a8318019-bcfe-31e3-a4ef-0c06b644f56f",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtQuick.framework\/Versions\/A\/QtQuick",
"name" : "QtQuick"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5307416576,
"size" : 393216,
"uuid" : "bf18b11a-9679-367d-a75d-3ac39709894a",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtOpenGL.framework\/Versions\/A\/QtOpenGL",
"name" : "QtOpenGL"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5310349312,
"size" : 507904,
"uuid" : "f60a7732-e6fd-3531-bee8-053628c12c76",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtQmlModels.framework\/Versions\/A\/QtQmlModels",
"name" : "QtQmlModels"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5308022784,
"size" : 180224,
"uuid" : "f10cd7b8-fbf6-3f9e-8a9d-6cb0d989664b",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtWebChannel.framework\/Versions\/A\/QtWebChannel",
"name" : "QtWebChannel"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5339709440,
"size" : 3637248,
"uuid" : "000421d5-d92e-32a9-bcad-7f94730b8a66",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtQml.framework\/Versions\/A\/QtQml",
"name" : "QtQml"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5308907520,
"size" : 1081344,
"uuid" : "f232088d-7d73-3597-ab6a-46682d4db172",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtNetwork.framework\/Versions\/A\/QtNetwork",
"name" : "QtNetwork"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5324783616,
"size" : 458752,
"uuid" : "45de9884-82be-3676-8fca-11ba46abd930",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtPositioning.framework\/Versions\/A\/QtPositioning",
"name" : "QtPositioning"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5323898880,
"size" : 81920,
"uuid" : "d36b54b4-46f4-3c48-969c-f0308500ce4e",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtQuickWidgets.framework\/Versions\/A\/QtQuickWidgets",
"name" : "QtQuickWidgets"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 4543004672,
"size" : 32768,
"uuid" : "8453e6d1-3b96-3db6-aedb-c5a4c2a22abc",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtWebChannel.abi3.so",
"name" : "QtWebChannel.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5327650816,
"size" : 491520,
"uuid" : "004380bd-9fda-3107-a0c3-836854990f97",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtNetwork.abi3.so",
"name" : "QtNetwork.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5324095488,
"size" : 212992,
"uuid" : "208ecaaa-cc8d-30ca-af3b-75667b15310a",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtWebEngineCore.abi3.so",
"name" : "QtWebEngineCore.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5326159872,
"size" : 163840,
"uuid" : "86e602e9-9007-36d3-b6fe-ad07d72e97b5",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtPrintSupport.abi3.so",
"name" : "QtPrintSupport.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5326536704,
"size" : 622592,
"uuid" : "9bbd9cd5-9744-3792-98aa-5f539f0bbb36",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/platforms\/libqcocoa.dylib",
"name" : "libqcocoa.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5332992000,
"CFBundleShortVersionString" : "1.0",
"CFBundleIdentifier" : "com.apple.AppleMetalOpenGLRenderer",
"size" : 442368,
"uuid" : "76243a19-d6d2-32ee-84d3-7bcfce93d66e",
"path" : "\/System\/Library\/Extensions\/AppleMetalOpenGLRenderer.bundle\/Contents\/MacOS\/AppleMetalOpenGLRenderer",
"name" : "AppleMetalOpenGLRenderer",
"CFBundleVersion" : "1"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5332647936,
"size" : 147456,
"uuid" : "24eae0c3-412b-3e2e-a94a-e55cf2c2eb3a",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/styles\/libqmacstyle.dylib",
"name" : "libqmacstyle.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5328781312,
"size" : 16384,
"uuid" : "3957e40d-4680-3cfe-bdbc-2cd7d75d88b6",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/fcntl.cpython-39-darwin.so",
"name" : "fcntl.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5367857152,
"size" : 163840,
"uuid" : "c300d432-9995-33a1-9ca3-bda766f91b26",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/pyexpat.cpython-39-darwin.so",
"name" : "pyexpat.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5349638144,
"size" : 65536,
"uuid" : "e3798f2d-56e0-3841-88c2-d7fef87405d2",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_socket.cpython-39-darwin.so",
"name" : "_socket.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5368348672,
"size" : 32768,
"uuid" : "07587faa-9c51-35d7-b774-63cc779579f9",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/array.cpython-39-darwin.so",
"name" : "array.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5332910080,
"size" : 16384,
"uuid" : "cfed1505-cef2-372b-abff-2a9183ec018e",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_queue.cpython-39-darwin.so",
"name" : "_queue.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5368463360,
"size" : 32768,
"uuid" : "0fd760ca-fc43-3633-8869-0a15ed7cc63d",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_csv.cpython-39-darwin.so",
"name" : "_csv.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5368266752,
"size" : 16384,
"uuid" : "c1f6524d-5178-3186-83fe-674e3fc1139d",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic_lib\/_load_libs.cpython-39-darwin.so",
"name" : "_load_libs.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5538627584,
"size" : 1097728,
"uuid" : "9dee03e7-402f-3331-a47d-58c5ff0b9f5f",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic_lib\/lib\/libatomstruct.dylib",
"name" : "libatomstruct.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5368135680,
"size" : 32768,
"uuid" : "e9c56de2-0673-3685-a1ac-9f1233dd056a",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic_lib\/lib\/libelement.dylib",
"name" : "libelement.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5534941184,
"size" : 16384,
"uuid" : "d598518e-d584-3e7a-8cca-8158788fd198",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic_lib\/lib\/libpyinstance.dylib",
"name" : "libpyinstance.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5535973376,
"size" : 180224,
"uuid" : "44264207-4e55-3340-9d33-1681043ff853",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic\/libmolc.dylib",
"name" : "libmolc.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5535023104,
"size" : 360448,
"uuid" : "54c0f177-7d69-317c-8f9e-f35ba1d3fe9c",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic\/cymol.cpython-39-darwin.so",
"name" : "cymol.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5535612928,
"size" : 98304,
"uuid" : "244b396b-d8da-3e34-9bdf-ef0dec8599af",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/tinyarray.cpython-39-darwin.so",
"name" : "tinyarray.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5368561664,
"size" : 49152,
"uuid" : "284b8731-a2c8-3514-ae27-d463d03920d2",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic\/cytmpl.cpython-39-darwin.so",
"name" : "cytmpl.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5542264832,
"size" : 409600,
"uuid" : "c21d0268-5f06-3a93-8baa-800a7499ef3b",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/map\/_map.cpython-39-darwin.so",
"name" : "_map.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5535858688,
"size" : 16384,
"uuid" : "b53f6785-3ed3-3c38-a2d9-01ec99a5c036",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/pdb_lib\/_load_libs.cpython-39-darwin.so",
"name" : "_load_libs.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5541642240,
"size" : 32768,
"uuid" : "7ff16478-6f30-39a1-8670-e855a0943943",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/pdb_lib\/lib\/libpdbconnect.dylib",
"name" : "libpdbconnect.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5542019072,
"size" : 98304,
"uuid" : "f0eaadfb-ddd6-3bee-9796-5878175aa83f",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_ssl.cpython-39-darwin.so",
"name" : "_ssl.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5541560320,
"size" : 16384,
"uuid" : "6e5d5c7b-21d3-36fb-a928-6b8dadc89167",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_scproxy.cpython-39-darwin.so",
"name" : "_scproxy.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5541429248,
"size" : 16384,
"uuid" : "e87f76a3-860e-33cb-bfb3-970652f58bf6",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/charset_normalizer\/md.cpython-39-darwin.so",
"name" : "md.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5545574400,
"size" : 147456,
"uuid" : "4768905e-52d2-3d6f-82e8-cb781c13c5e5",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/charset_normalizer\/md__mypyc.cpython-39-darwin.so",
"name" : "md__mypyc.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5548228608,
"size" : 1097728,
"uuid" : "fa737db9-044d-3482-b11d-82a5b37c9bba",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/unicodedata.cpython-39-darwin.so",
"name" : "unicodedata.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5545181184,
"size" : 32768,
"uuid" : "6c6dd46a-d736-351b-9280-67f5b0a10e43",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_multibytecodec.cpython-39-darwin.so",
"name" : "_multibytecodec.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5545099264,
"size" : 16384,
"uuid" : "80e77815-ba43-3ad3-a833-16901a94c077",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_uuid.cpython-39-darwin.so",
"name" : "_uuid.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5547540480,
"size" : 262144,
"uuid" : "89c6603a-85ef-3df0-a84b-ebb10bfde0f7",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/_decimal.cpython-39-darwin.so",
"name" : "_decimal.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5551292416,
"size" : 606208,
"uuid" : "a1c90f4d-ecb5-3434-9b71-504f959a64bf",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/_imaging.cpython-39-darwin.so",
"name" : "_imaging.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5552111616,
"size" : 524288,
"uuid" : "04e86d50-7ee3-3031-a704-5aee7fb0a241",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/.dylibs\/libopenjp2.2.5.0.dylib",
"name" : "libopenjp2.2.5.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5547950080,
"size" : 98304,
"uuid" : "1e32200a-b404-34fa-ad82-30a0fa724fbf",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/.dylibs\/libz.1.2.13.dylib",
"name" : "libz.1.2.13.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5552734208,
"size" : 507904,
"uuid" : "7f784df8-062a-3ce6-9b1b-db17c40e966a",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/.dylibs\/libtiff.5.dylib",
"name" : "libtiff.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5549981696,
"size" : 147456,
"uuid" : "4456996e-7ecd-34ec-9ef2-7bdf2921a961",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/.dylibs\/libxcb.1.1.0.dylib",
"name" : "libxcb.1.1.0.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5550260224,
"size" : 196608,
"uuid" : "a9c21fa8-f424-35b2-aea1-a16249317b69",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/.dylibs\/liblzma.5.dylib",
"name" : "liblzma.5.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5544968192,
"size" : 16384,
"uuid" : "c4277d3b-3bf8-35d7-8c64-3d68e5c3298d",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PIL\/.dylibs\/libXau.6.dylib",
"name" : "libXau.6.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5547458560,
"size" : 16384,
"uuid" : "04667be9-6977-31d5-b779-99f8b2c3f7c6",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/lib-dynload\/termios.cpython-39-darwin.so",
"name" : "termios.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5548113920,
"size" : 16384,
"uuid" : "e83c42de-475b-36fc-838c-1cbd53ed4f5d",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/matplotlib\/_c_internal_utils.cpython-39-darwin.so",
"name" : "_c_internal_utils.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5551063040,
"size" : 114688,
"uuid" : "4207204b-1a75-3903-8454-9b75eda67415",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/matplotlib\/_path.cpython-39-darwin.so",
"name" : "_path.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5560745984,
"size" : 589824,
"uuid" : "14d6b16d-4b60-3737-8567-fb268d4d61bc",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/matplotlib\/ft2font.cpython-39-darwin.so",
"name" : "ft2font.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5559549952,
"size" : 98304,
"uuid" : "5f786efa-8c9e-3feb-8e24-527df81d16bf",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/kiwisolver\/_cext.cpython-39-darwin.so",
"name" : "_cext.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5565677568,
"size" : 114688,
"uuid" : "af529281-f549-3535-a529-469314ad2115",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/matplotlib\/_image.cpython-39-darwin.so",
"name" : "_image.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5570592768,
"size" : 147456,
"uuid" : "831bcd47-2170-3035-a39e-9b612dc5f757",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/surface\/_surface.cpython-39-darwin.so",
"name" : "_surface.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5556240384,
"size" : 49152,
"uuid" : "69b9a9c7-7f79-3bf0-a358-985dc2076807",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/errorchecker.cpython-39-darwin.so",
"name" : "errorchecker.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5573050368,
"size" : 180224,
"uuid" : "b76ce204-4e31-33a3-8ec2-08a5d89f5ed3",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/arraydatatype.cpython-39-darwin.so",
"name" : "arraydatatype.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5572395008,
"size" : 212992,
"uuid" : "b358af6e-2d4e-3941-8bcf-b0b0c54241d1",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/wrapper.cpython-39-darwin.so",
"name" : "wrapper.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5560598528,
"size" : 49152,
"uuid" : "7d66e160-c17c-36b3-b5e6-301fed6f8908",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/formathandler.cpython-39-darwin.so",
"name" : "formathandler.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5565497344,
"size" : 32768,
"uuid" : "e757d1ad-8c53-346e-b259-77d4823e0316",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/latebind.cpython-39-darwin.so",
"name" : "latebind.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5570854912,
"size" : 114688,
"uuid" : "b4738644-c877-33df-9d92-1a7386d343d8",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/vbo.cpython-39-darwin.so",
"name" : "vbo.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5606719488,
"size" : 32768,
"uuid" : "e71c3de5-b310-3393-b099-ff78a411b384",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqgif.dylib",
"name" : "libqgif.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5606817792,
"size" : 32768,
"uuid" : "22be7df5-7bdf-37ed-8ab7-1f2029c6b483",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwbmp.dylib",
"name" : "libqwbmp.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5608112128,
"size" : 442368,
"uuid" : "07996527-d042-33be-ac0d-7a4604419102",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqwebp.dylib",
"name" : "libqwebp.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5606916096,
"size" : 32768,
"uuid" : "0d7001a7-bc8a-3567-959e-6f19d68ef11c",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqico.dylib",
"name" : "libqico.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5607014400,
"size" : 32768,
"uuid" : "8b3875f5-052d-3656-9e3f-172a9c76ec3d",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacheif.dylib",
"name" : "libqmacheif.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5608636416,
"size" : 262144,
"uuid" : "dc750c8d-0eaa-37b1-b0e9-3364410e49ac",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqjpeg.dylib",
"name" : "libqjpeg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5608980480,
"size" : 393216,
"uuid" : "9aca084c-6d63-3b98-be9d-e1fafd9b69aa",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtiff.dylib",
"name" : "libqtiff.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5607112704,
"size" : 32768,
"uuid" : "59735de3-cda7-3d80-af07-f996fa735b6b",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqsvg.dylib",
"name" : "libqsvg.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5609455616,
"size" : 229376,
"uuid" : "50928ce3-867e-39fe-a517-6c8e95f24c0c",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtSvg.framework\/Versions\/A\/QtSvg",
"name" : "QtSvg"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5607211008,
"size" : 32768,
"uuid" : "28853516-fc82-3cc8-ae4a-0e108a029bf6",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqpdf.dylib",
"name" : "libqpdf.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5609832448,
"size" : 7503872,
"uuid" : "5a1b6df8-ea04-3b6a-9c10-a23bc68efb5e",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/lib\/QtPdf.framework\/Versions\/A\/QtPdf",
"name" : "QtPdf"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5607309312,
"size" : 32768,
"uuid" : "1e416901-7fdb-3999-87e0-c433db485ad8",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqicns.dylib",
"name" : "libqicns.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5607407616,
"size" : 32768,
"uuid" : "a241350c-fd67-3e07-a820-1b7656dfa965",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqtga.dylib",
"name" : "libqtga.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5607505920,
"size" : 32768,
"uuid" : "7716c68e-cb20-3c7a-b6d7-196db6fca153",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/Qt6\/plugins\/imageformats\/libqmacjp2.dylib",
"name" : "libqmacjp2.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5574148096,
"size" : 49152,
"uuid" : "8e928412-9e96-32d4-b173-d99beb9fed0b",
"path" : "\/usr\/lib\/libobjc-trampolines.dylib",
"name" : "libobjc-trampolines.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5607604224,
"size" : 16384,
"uuid" : "c172cb7b-9414-3e05-98d3-e3df98ef8f32",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/core\/_mac_util.cpython-39-darwin.so",
"name" : "_mac_util.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 5669814272,
"CFBundleShortVersionString" : "3.0",
"CFBundleIdentifier" : "com.apple.security.csparser",
"size" : 131072,
"uuid" : "af79a0fa-e8a1-3134-bee8-c9567ed1e971",
"path" : "\/System\/Library\/Frameworks\/Security.framework\/Versions\/A\/PlugIns\/csparser.bundle\/Contents\/MacOS\/csparser",
"name" : "csparser",
"CFBundleVersion" : "60420.140.26"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5770903552,
"size" : 65536,
"uuid" : "fc5e5b8d-6d26-3a78-8feb-4bd6a43e4706",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/numpy_formathandler.cpython-39-darwin.so",
"name" : "numpy_formathandler.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5671632896,
"size" : 32768,
"uuid" : "9bf7e3b7-c5a0-3a18-8a12-ee4012a47df2",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/OpenGL_accelerate\/nones_formathandler.cpython-39-darwin.so",
"name" : "nones_formathandler.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6442254336,
"size" : 32768,
"uuid" : "741a95a2-c4dc-3ba3-bee2-0bcbe3139710",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/psutil\/_psutil_osx.abi3.so",
"name" : "_psutil_osx.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6100320256,
"size" : 16384,
"uuid" : "065bc7bc-cc26-3df8-a331-eedaf6a57935",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/psutil\/_psutil_posix.abi3.so",
"name" : "_psutil_posix.abi3.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5664210944,
"size" : 16384,
"uuid" : "997112e8-855e-344b-86ab-ceab352542fc",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/graphics\/_graphics.cpython-39-darwin.so",
"name" : "_graphics.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5517312000,
"size" : 81920,
"uuid" : "caf6a93a-5bae-3b7c-8f9a-9248a0cb317e",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/lz4\/_version.cpython-39-darwin.so",
"name" : "_version.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5690343424,
"size" : 180224,
"uuid" : "990922fe-e88a-3328-be36-ff9b2d95ff21",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/lz4\/frame\/_frame.cpython-39-darwin.so",
"name" : "_frame.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5666488320,
"size" : 131072,
"uuid" : "9c6580d2-2630-3f37-b36f-ec41984f56ef",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/core\/_serialize.cpython-39-darwin.so",
"name" : "_serialize.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5692850176,
"size" : 98304,
"uuid" : "fcd36a9e-ddef-34a1-a1b6-88ad2de2dda4",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/msgpack\/_cmsgpack.cpython-39-darwin.so",
"name" : "_cmsgpack.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5691932672,
"size" : 16384,
"uuid" : "fbf8d47b-2bb8-3f78-890a-f19dcbb40bad",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/linalg\/lapack_lite.cpython-39-darwin.so",
"name" : "lapack_lite.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5695668224,
"size" : 65536,
"uuid" : "52103497-3df9-3ee1-8c3e-eb9fa4e8884b",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/atomic\/_ribbons.cpython-39-darwin.so",
"name" : "_ribbons.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5699780608,
"size" : 409600,
"uuid" : "2cf8ba4c-d097-316e-b376-a467d48266ae",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/mmcif\/mmcif.cpython-39-darwin.so",
"name" : "mmcif.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 6080249856,
"size" : 409600,
"uuid" : "88a1569f-b660-3ec0-87a9-70cffceff24f",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/mmcif\/_mmcif.cpython-39-darwin.so",
"name" : "_mmcif.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5697699840,
"size" : 147456,
"uuid" : "bca6d8d4-5251-3b27-a818-029ac8d4b9b4",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/pdb\/_pdbio.cpython-39-darwin.so",
"name" : "_pdbio.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 11627675648,
"size" : 1589248,
"uuid" : "c5672f09-915e-3f0f-8e49-2062281dd942",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/lxml\/etree.cpython-39-darwin.so",
"name" : "etree.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5700386816,
"size" : 131072,
"uuid" : "230e85b9-62b9-3a23-888f-508b2bb21bb8",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/lxml\/_elementpath.cpython-39-darwin.so",
"name" : "_elementpath.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5700648960,
"size" : 16384,
"uuid" : "ea85992f-c986-369e-b77a-907d28556da6",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/alignment_algs\/_sw.cpython-39-darwin.so",
"name" : "_sw.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5751635968,
"size" : 16384,
"uuid" : "1c020283-72b1-3566-96e6-d60432be96a8",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/alignment_algs\/libalign_algs.dylib",
"name" : "libalign_algs.dylib"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5691015168,
"size" : 16384,
"uuid" : "b615a69c-844a-3bec-8117-373448fdb5c2",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/dssp\/_dssp.cpython-39-darwin.so",
"name" : "_dssp.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64",
"base" : 5692522496,
"size" : 32768,
"uuid" : "19fe003a-5977-398e-929f-87c8a17e9a3f",
"path" : "\/Applications\/ChimeraX-1.6.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/chimerax\/alignment_algs\/_nw.cpython-39-darwin.so",
"name" : "_nw.cpython-39-darwin.so"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7133261824,
"size" : 237560,
"uuid" : "08c5fe2a-b0bf-3ab6-bb42-460c18917d33",
"path" : "\/usr\/lib\/system\/libsystem_kernel.dylib",
"name" : "libsystem_kernel.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7133499392,
"size" : 53248,
"uuid" : "1f30fb9a-bdf9-32db-a709-8417666a7e45",
"path" : "\/usr\/lib\/system\/libsystem_pthread.dylib",
"name" : "libsystem_pthread.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7132049408,
"size" : 520184,
"uuid" : "949943e2-52cb-3c95-ab08-7ed984333d03",
"path" : "\/usr\/lib\/system\/libsystem_c.dylib",
"name" : "libsystem_c.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7133704192,
"size" : 28668,
"uuid" : "6d458354-3c39-3f35-a3bb-d01a78817b4a",
"path" : "\/usr\/lib\/system\/libsystem_platform.dylib",
"name" : "libsystem_platform.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7133917184,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.CoreFoundation",
"size" : 5087232,
"uuid" : "b3b2df49-2db8-370e-84ae-e0a2704515b8",
"path" : "\/System\/Library\/Frameworks\/CoreFoundation.framework\/Versions\/A\/CoreFoundation",
"name" : "CoreFoundation",
"CFBundleVersion" : "1979"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7150276608,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.Foundation",
"size" : 10248192,
"uuid" : "b7799cb6-0a3c-3c8b-a185-8cec55845b14",
"path" : "\/System\/Library\/Frameworks\/Foundation.framework\/Versions\/C\/Foundation",
"name" : "Foundation",
"CFBundleVersion" : "1979"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7186784256,
"CFBundleShortVersionString" : "6.9",
"CFBundleIdentifier" : "com.apple.AppKit",
"size" : 15794176,
"uuid" : "ab4a163e-3a53-3fde-a88d-130759291adb",
"path" : "\/System\/Library\/Frameworks\/AppKit.framework\/Versions\/C\/AppKit",
"name" : "AppKit",
"CFBundleVersion" : "2299.70.136"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7214178304,
"CFBundleShortVersionString" : "1.600.0",
"CFBundleIdentifier" : "com.apple.SkyLight",
"size" : 4374528,
"uuid" : "046a9ef4-9de4-34c4-a773-8b81523ec307",
"path" : "\/System\/Library\/PrivateFrameworks\/SkyLight.framework\/Versions\/A\/SkyLight",
"name" : "SkyLight"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7131742208,
"size" : 294912,
"uuid" : "9897030f-75d3-374b-8787-322d3d72e096",
"path" : "\/usr\/lib\/system\/libdispatch.dylib",
"name" : "libdispatch.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7293952000,
"CFBundleShortVersionString" : "2.1.1",
"CFBundleIdentifier" : "com.apple.HIToolbox",
"size" : 3358720,
"uuid" : "9bed5c79-f02f-3e0b-9fdb-57d955cc68ba",
"path" : "\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox",
"name" : "HIToolbox"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7129997312,
"size" : 583048,
"uuid" : "e7a99595-e0f8-34af-be8b-9347d0d658a4",
"path" : "\/usr\/lib\/dyld",
"name" : "dyld"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 7130603520,
"size" : 278528,
"uuid" : "33177e90-9bb2-36c5-9b60-21cbca32bb70",
"path" : "\/usr\/lib\/system\/libxpc.dylib",
"name" : "libxpc.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 8823791616,
"size" : 24572,
"uuid" : "627957c5-2136-32e0-8799-16f759aa6714",
"path" : "\/System\/Library\/Frameworks\/OpenGL.framework\/Versions\/A\/Libraries\/libCoreVMClient.dylib",
"name" : "libCoreVMClient.dylib"
},
{
"source" : "P",
"arch" : "arm64e",
"base" : 8823885824,
"size" : 12288,
"uuid" : "a728ae5f-744d-39e9-88dc-d2fc982156ba",
"path" : "\/System\/Library\/Frameworks\/OpenGL.framework\/Versions\/A\/Libraries\/libCVMSPluginSupport.dylib",
"name" : "libCVMSPluginSupport.dylib"
},
{
"size" : 0,
"source" : "A",
"base" : 0,
"uuid" : "00000000-0000-0000-0000-000000000000"
}
],
"sharedCache" : {
"base" : 7129333760,
"size" : 3553361920,
"uuid" : "9c875b0a-d532-3933-b1f0-f1ea72cedde2"
},
"vmSummary" : "ReadOnly portion of Libraries: Total=1.6G resident=0K(0%) swapped_out_or_unallocated=1.6G(100%)\nWritable regions: Total=8.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=8.0G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG backing stores 6864K 10 \nCG image 1808K 93 \nColorSync 592K 30 \nCoreAnimation 1904K 107 \nCoreGraphics 224K 14 \nCoreGraphics (reserved) 16K 1 reserved VM address space (unallocated)\nCoreServices 624K 2 \nCoreUI image data 5664K 57 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 6.0G 1302 \nMALLOC guard page 192K 11 \nMALLOC_MEDIUM (reserved) 1.0G 12 reserved VM address space (unallocated)\nMALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)\nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 56.8M 49 \nStack 168.2M 49 \nVM_ALLOCATE 349.4M 696 \nVM_ALLOCATE (reserved) 256.0M 3 reserved VM address space (unallocated)\n__AUTH 1850K 373 \n__AUTH_CONST 28.8M 607 \n__CTF 824 1 \n__DATA 20.3M 752 \n__DATA_CONST 39.0M 761 \n__DATA_DIRTY 1983K 233 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 831.4M 153 \n__OBJC_RO 66.4M 1 \n__OBJC_RW 2012K 1 \n__TEXT 852.4M 781 \ndyld private memory 272K 2 \nmapped file 246.6M 79 \nshared memory 3248K 31 \n=========== ======= ======= \nTOTAL 10.1G 6229 \nTOTAL, minus reserved VM space 8.6G 6229 \n",
"legacyInfo" : {
"threadTriggered" : {
"name" : "CrBrowserMain",
"queue" : "com.apple.main-thread"
}
},
"logWritingSignature" : "18057e587622bd37e81a368854adad8ca1a608f2",
"trialInfo" : {
"rollouts" : [
{
"rolloutId" : "63582c5f8a53461413999550",
"factorPackIds" : {
},
"deploymentId" : 240000002
},
{
"rolloutId" : "5f72dc58705eff005a46b3a9",
"factorPackIds" : {
},
"deploymentId" : 240000015
}
],
"experiments" : [
{
"treatmentId" : "3a3cf641-8471-4e4e-9ad4-81d0ede970fd",
"experimentId" : "64a84dae90d82611a0bd7d3d",
"deploymentId" : 400000004
},
{
"treatmentId" : "6dd670af-0633-45e4-ae5f-122ae4df02be",
"experimentId" : "64406ba83deb637ac8a04419",
"deploymentId" : 900000017
}
]
}
}
===== Log before crash start =====
UCSF ChimeraX version: 1.6 (2023-03-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open
> /Users/dout2/Downloads/InitialModels/h2B1-Apo_200_083_Protein_Mask_10x10.mrc
Opened h2B1-Apo_200_083_Protein_Mask_10x10.mrc as #1, grid size 200,200,200,
pixel 0.83, shown at level 1, step 1, values float32
> open /Users/dout2/Downloads/InitialModels/h2B1-Apo_200_083_Mask_10x10.mrc
Opened h2B1-Apo_200_083_Mask_10x10.mrc as #2, grid size 200,200,200, pixel
0.83, shown at level 1, step 1, values float32
> set bgColor white
> volume #1 level 0.9857
> volume #2 level 0.9695
> view
> close #1-2
> open /Users/dout2/Downloads/InitialModels/h2B1-Apo_region_536_200_083.mrc
Failed opening file
/Users/dout2/Downloads/InitialModels/h2B1-Apo_region_536_200_083.mrc:
File size 1736704 too small for grid size (200,200,200)
> open /Users/dout2/Downloads/InitialModels/h2B1-GDN_200_083.mrc
Opened h2B1-GDN_200_083.mrc as #1, grid size 200,200,200, pixel 0.83, shown at
level 0.0113, step 1, values float32
> open /Users/dout2/Downloads/InitialModels/h2B1-GDN_All_mask_200_083.mrc
Opened h2B1-GDN_All_mask_200_083.mrc as #2, grid size 200,200,200, pixel 0.83,
shown at level 1, step 1, values float32
> volume #1 level 0.0169
> open /Users/dout2/Downloads/InitialModels/h2B1-Apo_region_536_200_083.mrc
Failed opening file
/Users/dout2/Downloads/InitialModels/h2B1-Apo_region_536_200_083.mrc:
File size 1736704 too small for grid size (200,200,200)
> open /Users/dout2/Downloads/InitialModels/h2B1-Apo_region_536_200_083.mrc
Failed opening file
/Users/dout2/Downloads/InitialModels/h2B1-Apo_region_536_200_083.mrc:
File size 1736704 too small for grid size (200,200,200)
> open
> /Users/dout2/Downloads/InitialModels/h2B1-LMNG_region_536_lp15_0.00112.mrc
Opened h2B1-LMNG_region_536_lp15_0.00112.mrc as #3, grid size 200,200,200,
pixel 0.83, shown at level 0.00462, step 1, values float32
> volume #2 level 1
> volume #1 level 0.008052
> hide #!3 models
> show #!3 models
> volume #1 level 0.01195
> select add #3
2 models selected
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.58085,-0.80991,-0.081622,201.7,-0.17874,0.22472,-0.95789,157.43,0.79414,-0.5418,-0.27529,85.476
> view matrix models
> #3,-0.65613,-0.60705,-0.4483,221.86,-0.11831,0.66946,-0.73336,97.611,0.74531,-0.42814,-0.51108,99.839
> ui mousemode right "translate selected models"
> view matrix models
> #3,-0.65613,-0.60705,-0.4483,213.76,-0.11831,0.66946,-0.73336,103.14,0.74531,-0.42814,-0.51108,108.38
> view matrix models
> #3,-0.65613,-0.60705,-0.4483,218.12,-0.11831,0.66946,-0.73336,103.5,0.74531,-0.42814,-0.51108,109.76
> view matrix models
> #3,-0.65613,-0.60705,-0.4483,219.54,-0.11831,0.66946,-0.73336,102.46,0.74531,-0.42814,-0.51108,111.12
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.5289,-0.57414,-0.62501,221.19,0.060212,0.7092,-0.70243,82.086,0.84655,-0.40915,-0.34052,87.114
> view matrix models
> #3,-0.63255,-0.59214,-0.49925,220.64,-0.076238,0.68906,-0.72068,96.378,0.77076,-0.4178,-0.48101,105.7
> view matrix models
> #3,-0.47597,-0.54409,-0.69095,219.92,0.10382,0.7454,-0.65848,71.923,0.87331,-0.38515,-0.2983,79.462
> ui mousemode right "translate selected models"
> view matrix models
> #3,-0.47597,-0.54409,-0.69095,222.95,0.10382,0.7454,-0.65848,73.191,0.87331,-0.38515,-0.2983,79.842
> view matrix models
> #3,-0.47597,-0.54409,-0.69095,222.66,0.10382,0.7454,-0.65848,75.09,0.87331,-0.38515,-0.2983,79.639
> view matrix models
> #3,-0.47597,-0.54409,-0.69095,223.27,0.10382,0.7454,-0.65848,74.722,0.87331,-0.38515,-0.2983,79.835
> ui mousemode right "rotate selected models"
> view matrix models
> #3,-0.43094,-0.53747,-0.72486,221.88,-0.083361,0.82355,-0.56108,75.525,0.89852,-0.18137,-0.3997,69.633
> view matrix models
> #3,-0.55558,-0.59752,-0.57818,224.73,-0.26734,0.78683,-0.55626,93.124,0.78731,-0.15448,-0.59689,92.935
> ui mousemode right "translate selected models"
> view matrix models
> #3,-0.55558,-0.59752,-0.57818,222.44,-0.26734,0.78683,-0.55626,90.268,0.78731,-0.15448,-0.59689,93.174
> vop resample #3 onGrid #1
Opened h2B1-LMNG_region_536_lp15_0.00112.mrc resampled as #4, grid size
200,200,200, pixel 0.83, shown at step 1, values float32
> close #3
> volume #4 level 0.003042
> volume #4 level 0.00112
> volume #1 level 0.008186
> show #!2 models
> hide #!2 models
> select add #4
2 models selected
> view matrix models #4,1,0,0,2.3279,0,1,0,-0.39672,0,0,1,-5.7749
> view matrix models #4,1,0,0,1.4657,0,1,0,-4.2368,0,0,1,-4.4723
> ui mousemode right "rotate selected models"
> view matrix models
> #4,0.99915,0.039781,0.011152,-3.0524,-0.041017,0.98748,0.15234,-13.707,-0.0049521,-0.15267,0.98826,10.696
> ui mousemode right "translate selected models"
> view matrix models
> #4,0.99915,0.039781,0.011152,-2.5242,-0.041017,0.98748,0.15234,-14.706,-0.0049521,-0.15267,0.98826,7.7615
> vop resample #4 onGrid #1
Opened h2B1-LMNG_region_536_lp15_0.00112.mrc resampled resampled as #3, grid
size 200,200,200, pixel 0.83, shown at step 1, values float32
> close #4
> show #!2 models
> hide #!2 models
> select add #3
2 models selected
> view matrix models #3,1,0,0,0.73077,0,1,0,-0.95869,0,0,1,-5.9547
> show #!2 models
> hide #!2 models
> view matrix models #3,1,0,0,0.58643,0,1,0,-0.65131,0,0,1,-5.3452
> ui mousemode right "rotate selected models"
> view matrix models
> #3,0.51097,0.74697,-0.42537,14.387,-0.85036,0.51161,-0.12308,123.53,0.12568,0.42461,0.89661,-43.454
> ui tool show "Fit in Map"
> fitmap #3 inMap #1
Fit map h2B1-LMNG_region_536_lp15_0.00112.mrc resampled resampled in map
h2B1-GDN_200_083.mrc using 180382 points
correlation = 0.6646, correlation about mean = 0.1066, overlap = 5.459
steps = 200, shift = 12.4, angle = 31 degrees
Position of h2B1-LMNG_region_536_lp15_0.00112.mrc resampled resampled (#3)
relative to h2B1-GDN_200_083.mrc (#1) coordinates:
Matrix rotation and translation
0.62938933 0.50771743 -0.58829591 40.10468692
-0.77328723 0.33439890 -0.53870608 154.15519843
-0.07678496 0.79397757 0.60307851 -35.59247163
Axis 0.69483569 -0.26669200 -0.66789126
Axis point 0.00000000 112.28073278 152.64028403
Rotation angle (degrees) 73.53477388
Shift along axis 10.52611098
> undo
> view matrix models
> #3,0.99591,0.027233,0.086137,-8.7461,-0.030519,0.99885,0.037072,-1.1347,-0.085028,-0.039549,0.99559,5.6039
> ui mousemode right "translate selected models"
> view matrix models
> #3,0.99591,0.027233,0.086137,-9.2248,-0.030519,0.99885,0.037072,-0.7938,-0.085028,-0.039549,0.99559,9.59
> show #!2 models
> hide #!2 models
> vop resample #5 onGrid #1
> vop resample #3 onGrid #1
Opened h2B1-LMNG_region_536_lp15_0.00112.mrc resampled resampled resampled as
#4, grid size 200,200,200, pixel 0.83, shown at step 1, values float32
> close #3
> save /Users/dout2/Downloads/InitialModels/h2B1-GDN_Protein_200_083.mrc
> models #4
> show #!1 models
> volume #1 level 0.003793
> open /Users/dout2/Downloads/InitialModels/h2B1-Apo_200_083.mrc
Opened h2B1-Apo_200_083.mrc as #3, grid size 200,200,200, pixel 0.83, shown at
level 0.00411, step 1, values float32
> hide #!4 models
> volume #3 level 0.005579
> volume #3 level 0.006088
> open /Users/dout2/Downloads/InitialModels/h2B1-Apo_200_083_Mask.mrc
Opened h2B1-Apo_200_083_Mask.mrc as #5, grid size 200,200,200, pixel 0.83,
shown at level 1, step 1, values float32
> open /Users/dout2/Downloads/InitialModels/h2B1-Apo_200_083_Protein_Mask.mrc
Opened h2B1-Apo_200_083_Protein_Mask.mrc as #6, grid size 200,200,200, pixel
0.83, shown at level 1, step 1, values float32
> volume #5 level 0.9847
> volume #6 level 0.9762
> volume #3 level 0.003031
> show #!4 models
> hide #!4 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!1 models
> hide #!1 models
> hide #!6 models
> show #!4 models
> show #!1 models
> show #!2 models
> hide #!2 models
> show #!2 models
> hide #!2 models
> hide #!4 models
> show #!4 models
> hide #!1 models
> show #!1 models
> hide #!4 models
> show #!4 models
> hide #!1 models
> open /Users/dout2/Downloads/InitialModels/h2B1-GDN_Protein_mask_200_083.mrc
Opened h2B1-GDN_Protein_mask_200_083.mrc as #7, grid size 200,200,200, pixel
0.83, shown at level 1, step 1, values float32
> volume #7 level 1
> show #!1 models
> view
> ui tool show "Side View"
> hide #!4 models
> show #!2 models
> hide #!2 models
> hide #!1 models
> show #!1 models
> view
> hide #!1 models
> show #!1 models
> hide #!1 models
> show #!1 models
> hide #!7 models
> volume #1 level 0.01603
> show #!7 models
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> volume #1 level 0.004316
> hide #!1 models
> show #!5 models
> hide #!5 models
> show #!5 models
> hide #!5 models
> close #6
> close #5
> close #3
> show #!1 models
> volume #1 level 0.01212
> hide #!7 models
> show #!7 models
> hide #!7 models
> open /Users/dout2/Downloads/20230711Krios_mOCT1-HEPES-
> LMNG/job160/run_class001.mrc
Opened run_class001.mrc as #3, grid size 160,160,160, pixel 0.83, shown at
level 0.00436, step 1, values float32
> open /Users/dout2/Downloads/20230711Krios_mOCT1-HEPES-
> LMNG/job160/run_class001_angdist.bild
Opened BILD data containing 3063 objects
> hide #!1 models
> close #1-2
> close #4
> close #7
> view
> hide #5 models
> lighting soft
> lighting simple
> open "/Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/Compare
> with our structure.cxs"
Opened cryosparc_P4_J16__localfilter_240.mrc as #2, grid size 240,240,240,
pixel 0.553, shown at level 0.238, step 1, values float32
Opened cryosparc_P4_J89__localfilter_160.mrc as #3, grid size 160,160,160,
pixel 0.83, shown at level 0.134, step 1, values float32
Opened cryosparc_P4_J55__localfilter_160.mrc as #5, grid size 160,160,160,
pixel 0.83, shown at level 0.136, step 1, values float32
Opened rOAT1-AKG_8bw7_emd_16280.map as #7, grid size 288,288,288, pixel 0.832,
shown at level 0.514, step 1, values float32
Opened rOAT1-AKG_8omu_emd_16977.map as #9, grid size 288,288,288, pixel 0.832,
shown at level 0.397, step 1, values float32
Opened rOAT1-apo_8bvr_emd_16269.map as #11, grid size 288,288,288, pixel
0.832, shown at level 0.628, step 1, values float32
Opened rOAT1-PBD_8bvt_emd_16271.map as #13, grid size 288,288,288, pixel
0.832, shown at level 0.182, step 2, values float32
Opened rOAT1-TFV_8bvs_emd_16270.map as #15, grid size 288,288,288, pixel
0.832, shown at level 0.191, step 2, values float32
opened ChimeraX session
> show #!2 models
> hide #!2 models
> show #1 models
> view
> hide #1 models
> show #!4 models
> hide #!4 models
> show #6 models
> select clear
> select #6/B:601@O10
1 atom, 1 residue, 1 model selected
> select up
19 atoms, 19 bonds, 1 residue, 1 model selected
> view sel
> show #!14 models
> view
> ui tool show Matchmaker
> matchmaker #!14 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-PBD_8bvt.pdb, chain A (#14), sequence alignment score = 2439.7
RMSD between 487 pruned atom pairs is 0.832 angstroms; (across all 498 pairs:
0.989)
> view matrix models #6,1,0,0,-1.377,0,1,0,0.17197,0,0,1,-0.2168
> select clear
> select #6/B:601@C17
1 atom, 1 residue, 1 model selected
> select up
19 atoms, 19 bonds, 1 residue, 1 model selected
> view sel
> matchmaker #!8 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-AKG_8bw7.pdb, chain A (#8), sequence alignment score = 2492.5
RMSD between 483 pruned atom pairs is 0.880 angstroms; (across all 492 pairs:
0.934)
> matchmaker #!10 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-AKG_8omu.pdb, chain A (#10), sequence alignment score = 2456.5
RMSD between 480 pruned atom pairs is 0.876 angstroms; (across all 492 pairs:
0.968)
> matchmaker #!12 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-apo_8bvr.pdb, chain A (#12), sequence alignment score = 2447.5
RMSD between 481 pruned atom pairs is 0.838 angstroms; (across all 495 pairs:
0.921)
> matchmaker #!16 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-TFV_8bvs.pdb, chain A (#16), sequence alignment score = 2464.3
RMSD between 483 pruned atom pairs is 0.804 angstroms; (across all 495 pairs:
0.869)
> show #!16 models
> hide #!16 models
> show #!16 models
> hide #!16 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!16 models
> select
> #6/A:28,31,35,142,145,200,203,204,207,223,226,227,230,231,234,346,350,353,354,378,382,435,438,439,442,462,465,466,469
232 atoms, 216 bonds, 29 residues, 1 model selected
> show sel atoms
> save "/Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/Compare
> with our structure.cxs" includeMaps true
> color #16 #8b7338ff
> color #16 #897338ff
> color #16 #897354ff
> color #16 #89735fff
> color #16 #89805fff
> color #16 #896e5fff
> color #16 #926e5fff
> color #16 #9b6e5fff
> select add #6
3905 atoms, 3985 bonds, 515 residues, 1 model selected
> select subtract #6
Nothing selected
> select add #16
4799 atoms, 4916 bonds, 2 pseudobonds, 619 residues, 2 models selected
> color (#!16 & sel) byhetero
> select
> #/A:28,31,35,142,145,200,203,204,207,223,226,227,230,231,234,346,350,353,354,378,382,435,438,439,442,462,465,466,469
Expected an objects specifier or a keyword
> select
> :28,31,35,142,145,200,203,204,207,223,226,227,230,231,234,346,350,353,354,378,382,435,438,439,442,462,465,466,469
1966 atoms, 1824 bonds, 250 residues, 8 models selected
> show sel & #6#!14,16 atoms
> hide #!16 models
> hide #!14 models
> show #!14 models
> matchmaker #!14 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-PBD_8bvt.pdb, chain A (#14), sequence alignment score = 2439.7
RMSD between 487 pruned atom pairs is 0.832 angstroms; (across all 498 pairs:
0.989)
> matchmaker #!16 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-TFV_8bvs.pdb, chain A (#16), sequence alignment score = 2464.3
RMSD between 483 pruned atom pairs is 0.804 angstroms; (across all 495 pairs:
0.869)
> matchmaker #!12 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-apo_8bvr.pdb, chain A (#12), sequence alignment score = 2447.5
RMSD between 481 pruned atom pairs is 0.838 angstroms; (across all 495 pairs:
0.921)
> matchmaker #!10 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-AKG_8omu.pdb, chain A (#10), sequence alignment score = 2456.5
RMSD between 480 pruned atom pairs is 0.876 angstroms; (across all 492 pairs:
0.968)
> matchmaker #!8 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-AKG_8bw7.pdb, chain A (#8), sequence alignment score = 2492.5
RMSD between 483 pruned atom pairs is 0.880 angstroms; (across all 492 pairs:
0.934)
> hide #!14 models
> show #!16 models
> hide #6 models
> show #!14 models
> hide #!14 models
> hide #!16 models
> show #6 models
> select clear
> show #!14 models
> lighting soft
> show #!10 models
> select ::name="AKG"
10 atoms, 9 bonds, 1 residue, 1 model selected
> view sel
> show #6#!10,14 atoms
> undo
> select ::name="AKG"
10 atoms, 9 bonds, 1 residue, 1 model selected
> show #6#!10,14 atoms
> undo
> view
> hide #!14 models
> hide #6 models
> show #!8 models
> hide #!10 models
> show #!14 models
> show #6 models
> hide #!8 models
> select add #8
4748 atoms, 4863 bonds, 2 pseudobonds, 614 residues, 2 models selected
> select subtract #8
Nothing selected
> hide #!14 models
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
19 atoms, 19 bonds, 1 residue, 1 model selected
> view sel
> show #!8 models
> hide #!8 models
> show #!8 models
> show #!14 models
> show #!16 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!8 models
> show #!8 models
> hide #!12 models
> select ::name="CL"
2 atoms, 2 residues, 2 models selected
> show sel atoms
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select clear
> select #16/A:602@CL
1 atom, 1 residue, 1 model selected
> select #16/A:602@CL
1 atom, 1 residue, 1 model selected
> select clear
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select clear
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select clear
> select #16/A:602@CL
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select add #14
4518 atoms, 4615 bonds, 2 pseudobonds, 625 residues, 3 models selected
> select subtract #14
1 atom, 1 residue, 1 model selected
> select add #16
4799 atoms, 4916 bonds, 2 pseudobonds, 619 residues, 2 models selected
> select add #14
9316 atoms, 9531 bonds, 4 pseudobonds, 1243 residues, 4 models selected
> select add #12
14110 atoms, 14439 bonds, 6 pseudobonds, 1863 residues, 6 models selected
> select add #8
18858 atoms, 19302 bonds, 8 pseudobonds, 2477 residues, 8 models selected
> select add #6
22763 atoms, 23287 bonds, 8 pseudobonds, 2992 residues, 9 models selected
> select subtract #12
17969 atoms, 18379 bonds, 6 pseudobonds, 2372 residues, 7 models selected
> hide sel atoms
> select ::name="AKG"
10 atoms, 9 bonds, 1 residue, 1 model selected
> show sel atoms
> select ::name="CL"
2 atoms, 2 residues, 2 models selected
> show sel atoms
> select add #16
4800 atoms, 4916 bonds, 2 pseudobonds, 620 residues, 3 models selected
> select subtract #16
1 atom, 1 residue, 1 model selected
> select #16/A:602@CL
1 atom, 1 residue, 1 model selected
> select #16/A:602@CL
1 atom, 1 residue, 1 model selected
> select clear
> select #16/A:602@CL
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select ::name="LIG"
42 atoms, 42 bonds, 2 residues, 2 models selected
> show sel & #6 atoms
> select ::name="RTO"
19 atoms, 19 bonds, 1 residue, 1 model selected
> show sel atoms
> select ::name="TFO"
19 atoms, 20 bonds, 1 residue, 1 model selected
> show sel atoms
> select clear
> hide #!16 models
> show #!16 models
> hide #!16 models
> hide #!14 models
> show #!14 models
> show #!16 models
> hide #6 models
> show #6 models
> show #!4 models
> select clear
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
11 atoms, 10 bonds, 1 residue, 1 model selected
> hide sel atoms
> show sel atoms
> hide sel atoms
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/dout2/Desktop/movie1.mp4
Movie saved to /Users/dout2/Desktop/movie1.mp4
> hide #!16 models
> hide #!14 models
> hide #!8 models
> hide #6 models
> show #6 models
> select
> :28,31,35,142,145,200,203,204,207,223,226,227,230,231,234,346,350,353,354,378,382,435,438,439,442,462,465,466,469
1966 atoms, 1824 bonds, 250 residues, 8 models selected
> show sel & #6#!4 atoms
> hide sel & #6#!4 atoms
> show #!16 models
> show #!14 models
> show #!10 models
> hide #!10 models
> show #!8 models
> show #1 models
> view
> select clear
Drag select of 23 residues
> select clear
> matchmaker #1 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-apo-coot-4_real_space_refined_004.pdb, chain A (#1), sequence alignment
score = 2582.7
RMSD between 500 pruned atom pairs is 0.389 angstroms; (across all 500 pairs:
0.389)
> matchmaker #1 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-apo-coot-4_real_space_refined_004.pdb, chain A (#1), sequence alignment
score = 2582.7
RMSD between 500 pruned atom pairs is 0.389 angstroms; (across all 500 pairs:
0.389)
> matchmaker #1 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-apo-coot-4_real_space_refined_004.pdb, chain A (#1), sequence alignment
score = 2582.7
RMSD between 500 pruned atom pairs is 0.389 angstroms; (across all 500 pairs:
0.389)
> matchmaker #!4 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-PAH-coot-7_real_space_refined_007.pdb, chain A (#4), sequence alignment
score = 2547.2
RMSD between 494 pruned atom pairs is 0.541 angstroms; (across all 494 pairs:
0.541)
> matchmaker #!8 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-AKG_8bw7.pdb, chain A (#8), sequence alignment score = 2492.5
RMSD between 483 pruned atom pairs is 0.880 angstroms; (across all 492 pairs:
0.934)
> matchmaker #!10 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-AKG_8omu.pdb, chain A (#10), sequence alignment score = 2456.5
RMSD between 480 pruned atom pairs is 0.876 angstroms; (across all 492 pairs:
0.968)
> matchmaker #!12 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-apo_8bvr.pdb, chain A (#12), sequence alignment score = 2447.5
RMSD between 481 pruned atom pairs is 0.838 angstroms; (across all 495 pairs:
0.921)
> matchmaker #!14 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-PBD_8bvt.pdb, chain A (#14), sequence alignment score = 2439.7
RMSD between 487 pruned atom pairs is 0.832 angstroms; (across all 498 pairs:
0.989)
> matchmaker #!16 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-TFV_8bvs.pdb, chain A (#16), sequence alignment score = 2464.3
RMSD between 483 pruned atom pairs is 0.804 angstroms; (across all 495 pairs:
0.869)
> save "/Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/Compare
> with our structure.cxs" includeMaps true
> select clear
> select
> :28,31,35,142,145,200,203,204,207,223,226,227,230,231,234,346,350,353,354,378,382,435,438,439,442,462,465,466,469
1966 atoms, 1824 bonds, 250 residues, 8 models selected
> show sel & #1,6#!4,8,14,16 atoms
> select clear
> select ::name="AKG"
10 atoms, 9 bonds, 1 residue, 1 model selected
> hide #!16 models
> hide #!14 models
> hide #6 models
> hide #!4 models
> hide #1 models
> view sel
> select #8/A:227
4 atoms, 3 bonds, 1 residue, 1 model selected
> show sel atoms
> select clear
> hide #!8 models
> show #!4 models
> hide #!4 models
> show #6 models
> hide #6 models
> show #!8 models
> show #!7 models
> view
> select add #7
2 models selected
> view matrix models #7,1,0,0,-36.048,0,1,0,-57.002,0,0,1,-43.227
> ui mousemode right "rotate selected models"
> view matrix models
> #7,-0.66795,0.62893,-0.39786,126.1,0.6813,0.73189,0.013168,-103.71,0.29947,-0.26226,-0.91735,187.58
> view matrix models
> #7,-0.4798,0.59643,0.64348,-18.089,0.82458,0.055961,0.56296,-106.32,0.29976,0.80071,-0.51866,12.357
> view matrix models
> #7,-0.52351,-0.34401,0.77948,82.349,0.27498,-0.93413,-0.22758,170.05,0.80643,0.0952,0.58362,-95.083
> view matrix models
> #7,-0.31083,-0.81764,0.48461,150.63,-0.057776,-0.49267,-0.8683,233.09,0.94871,-0.29789,0.1059,-6.178
> view matrix models
> #7,-0.23651,-0.97114,0.030936,215.74,0.28098,-0.098839,-0.95461,158.36,0.93012,-0.21708,0.29624,-36.877
> view matrix models
> #7,-0.35413,-0.91884,0.17413,205.38,0.16914,-0.24605,-0.95438,188.53,0.91977,-0.30852,0.24254,-18.275
> ui mousemode right "translate selected models"
> view matrix models
> #7,-0.35413,-0.91884,0.17413,200.43,0.16914,-0.24605,-0.95438,188.63,0.91977,-0.30852,0.24254,-40.45
> view matrix models
> #7,-0.35413,-0.91884,0.17413,196.88,0.16914,-0.24605,-0.95438,189.66,0.91977,-0.30852,0.24254,-37.373
> view matrix models
> #7,-0.35413,-0.91884,0.17413,193.59,0.16914,-0.24605,-0.95438,189.73,0.91977,-0.30852,0.24254,-33.699
> view matrix models
> #7,-0.35413,-0.91884,0.17413,196.46,0.16914,-0.24605,-0.95438,189.46,0.91977,-0.30852,0.24254,-37.728
> view matrix models
> #7,-0.35413,-0.91884,0.17413,196.58,0.16914,-0.24605,-0.95438,187.09,0.91977,-0.30852,0.24254,-40.121
> view matrix models
> #7,-0.35413,-0.91884,0.17413,198.44,0.16914,-0.24605,-0.95438,188.26,0.91977,-0.30852,0.24254,-37.343
> ui mousemode right "rotate selected models"
> view matrix models
> #7,-0.26315,-0.91847,0.29525,173.36,0.1482,-0.34089,-0.92835,198.75,0.9533,-0.20054,0.22583,-51.965
> ui tool show "Fit in Map"
> fitmap #7 inMap #5
Fit map rOAT1-AKG_8bw7_emd_16280.map in map
cryosparc_P4_J55__localfilter_160.mrc using 36334 points
correlation = 0.6898, correlation about mean = 0.4442, overlap = 6999
steps = 76, shift = 2.49, angle = 6.77 degrees
Position of rOAT1-AKG_8bw7_emd_16280.map (#7) relative to
cryosparc_P4_J55__localfilter_160.mrc (#5) coordinates:
Matrix rotation and translation
-0.18514202 -0.94582948 0.26670025 170.30685051
0.08128383 -0.28520123 -0.95501476 202.77297048
0.97934435 -0.15513494 0.12968338 -51.08266521
Axis 0.53895668 -0.48017751 0.69206594
Axis point 46.26900426 145.40872259 0.00000000
Rotation angle (degrees) 132.09253462
Shift along axis -40.93157825
> select clear
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> view sel
> fitmap #8 inMap #7
Fit molecule rOAT1-AKG_8bw7.pdb (#8) to map rOAT1-AKG_8bw7_emd_16280.map (#7)
using 4748 atoms
average map value = 0.6152, steps = 52
shifted from previous position = 1.37
rotated from previous position = 0.365 degrees
atoms outside contour = 2313, contour level = 0.51433
Position of rOAT1-AKG_8bw7.pdb (#8) relative to rOAT1-AKG_8bw7_emd_16280.map
(#7) coordinates:
Matrix rotation and translation
0.99999987 -0.00029192 -0.00044187 0.10650603
0.00029139 0.99999925 -0.00119303 0.10176166
0.00044222 0.00119290 0.99999920 -0.19755122
Axis 0.91398689 -0.33867000 0.22345154
Axis point 0.00000000 169.17719005 90.50923993
Rotation angle (degrees) 0.07478432
Shift along axis 0.01873837
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> show sel atoms
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select clear
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> show sel atoms
> hide sel atoms
> hide #!8 models
> hide #!7 models
> select add #8
4748 atoms, 4863 bonds, 2 pseudobonds, 614 residues, 2 models selected
> select subtract #8
Nothing selected
> show #6 models
> show #!5 models
> volume #5 level 0.1927
> fitmap #6 inMap #5
Fit molecule rOAT1-PBD-coot-4_real_space_refined_004.pdb (#6) to map
cryosparc_P4_J55__localfilter_160.mrc (#5) using 3905 atoms
average map value = 0.3521, steps = 56
shifted from previous position = 1.42
rotated from previous position = 0.0512 degrees
atoms outside contour = 1233, contour level = 0.19268
Position of rOAT1-PBD-coot-4_real_space_refined_004.pdb (#6) relative to
cryosparc_P4_J55__localfilter_160.mrc (#5) coordinates:
Matrix rotation and translation
0.99999961 0.00031734 0.00082049 -0.06413452
-0.00031721 0.99999994 -0.00015651 0.02835017
-0.00082053 0.00015625 0.99999965 0.05609006
Axis 0.17502166 0.91830279 -0.35508787
Axis point 66.11473996 0.00000000 77.10818900
Rotation angle (degrees) 0.05119419
Shift along axis -0.00510779
> color #5 #b2ffff82 models
> color #5 #b2ffff81 models
> color #5 #b2ffffce models
> color #5 #b2ffffcd models
> view
Drag select of 5 cryosparc_P4_J55__localfilter_160.mrc , 4 atoms, 3 residues,
5 bonds
> select clear
> hide #!5 models
> select #6/A:466@CD
1 atom, 1 residue, 1 model selected
> select up
11 atoms, 10 bonds, 1 residue, 1 model selected
> view sel
> show #!7 models
> hide #!7 models
> show #!5 models
> hide #6 models
> show #6 models
> hide #!5 models
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
19 atoms, 19 bonds, 1 residue, 1 model selected
> view sel
> show #!5 models
> volume #5 level 0.3052
> show #!8 models
> select ::name="CL"
2 atoms, 2 residues, 2 models selected
> show sel & #!8 atoms
> hide #!8 models
> select add #8
4749 atoms, 4863 bonds, 2 pseudobonds, 615 residues, 3 models selected
> hide #6 models
> hide #!5 models
> select subtract #8
1 atom, 1 residue, 1 model selected
> show #1 models
> show #!2 models
> fitmap #1 inMap #2
Fit molecule rOAT1-apo-coot-4_real_space_refined_004.pdb (#1) to map
cryosparc_P4_J16__localfilter_240.mrc (#2) using 3942 atoms
average map value = 1.007, steps = 64
shifted from previous position = 1.27
rotated from previous position = 0.342 degrees
atoms outside contour = 266, contour level = 0.23806
Position of rOAT1-apo-coot-4_real_space_refined_004.pdb (#1) relative to
cryosparc_P4_J16__localfilter_240.mrc (#2) coordinates:
Matrix rotation and translation
1.00000000 -0.00003468 -0.00003690 0.00161997
0.00003467 0.99999999 -0.00011321 0.00083435
0.00003691 0.00011321 0.99999999 -0.00970127
Axis 0.91284205 -0.29757638 0.27958485
Axis point 0.00000000 82.03089401 3.46963304
Rotation angle (degrees) 0.00710604
Shift along axis -0.00148184
> color #2 #b2b2b2cc models
> volume #2 level 0.4884
> show #!8 models
> hide #!8 models
> show #!8 models
> matchmaker #!8 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-AKG_8bw7.pdb, chain A (#8), sequence alignment score = 2492.5
RMSD between 483 pruned atom pairs is 0.880 angstroms; (across all 492 pairs:
0.934)
> matchmaker #!8 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-AKG_8bw7.pdb, chain A (#8), sequence alignment score = 2492.5
RMSD between 483 pruned atom pairs is 0.880 angstroms; (across all 492 pairs:
0.934)
> hide #!8 models
> volume #2 level 0.5809
> hide #!2 models
> hide #1 models
> show #!8 models
> show #!7 models
> show #6 models
> hide #!7 models
> hide #6 models
> select #8/A:463
7 atoms, 6 bonds, 1 residue, 1 model selected
> show sel atoms
> select clear
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select #8/A:466@NH1
1 atom, 1 residue, 1 model selected
> ui tool show Distances
No distances to delete!
Exactly two atoms must be selected!
> select clear
> select #8/A:466@NH1
1 atom, 1 residue, 1 model selected
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select subtract #8/A:602@CL
Nothing selected
> select add #8/A:466@NH1
1 atom, 1 residue, 1 model selected
Exactly two atoms must be selected!
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select add #8/A:466@NH1
2 atoms, 2 residues, 1 model selected
> distance #8/A:602@CL #8/A:466@NH1
Distance between rOAT1-AKG_8bw7.pdb #8/A CL 602 CL and ARG 466 NH1: 3.468Å
> select #8/A:462@OG
1 atom, 1 residue, 1 model selected
> select add #8/A:602@CL
2 atoms, 2 residues, 1 model selected
> distance #8/A:462@OG #8/A:602@CL
Distance between rOAT1-AKG_8bw7.pdb #8/A SER 462 OG and CL 602 CL: 4.399Å
> select clear
> select add #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select add #8/A:463@OG1
2 atoms, 2 residues, 1 model selected
> distance #8/A:602@CL #8/A:463@OG1
Distance between rOAT1-AKG_8bw7.pdb #8/A CL 602 CL and THR 463 OG1: 8.777Å
> select clear
Unsupported scale factor (0.000000) detected on Display0
QPainter::begin: Paint device returned engine == 0, type: 3
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.6 (2023-03-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/Compare
> with our structure.cxs"
Opened cryosparc_P4_J16__localfilter_240.mrc as #2, grid size 240,240,240,
pixel 0.553, shown at level 0.238, step 1, values float32
Opened cryosparc_P4_J89__localfilter_160.mrc as #3, grid size 160,160,160,
pixel 0.83, shown at level 0.134, step 1, values float32
Opened cryosparc_P4_J55__localfilter_160.mrc as #5, grid size 160,160,160,
pixel 0.83, shown at level 0.136, step 1, values float32
Opened rOAT1-AKG_8bw7_emd_16280.map as #7, grid size 288,288,288, pixel 0.832,
shown at level 0.514, step 1, values float32
Opened rOAT1-AKG_8omu_emd_16977.map as #9, grid size 288,288,288, pixel 0.832,
shown at level 0.397, step 1, values float32
Opened rOAT1-apo_8bvr_emd_16269.map as #11, grid size 288,288,288, pixel
0.832, shown at level 0.628, step 1, values float32
Opened rOAT1-PBD_8bvt_emd_16271.map as #13, grid size 288,288,288, pixel
0.832, shown at level 0.182, step 2, values float32
Opened rOAT1-TFV_8bvs_emd_16270.map as #15, grid size 288,288,288, pixel
0.832, shown at level 0.191, step 2, values float32
Log from Sun Aug 27 22:20:39 2023UCSF ChimeraX version: 1.6 (2023-03-23)
© 2016-2023 Regents of the University of California. All rights reserved.
> open "/Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/Compare
> with our structure.cxs"
Opened cryosparc_P4_J16__localfilter_240.mrc as #2, grid size 240,240,240,
pixel 0.553, shown at level 0.238, step 1, values float32
Opened cryosparc_P4_J89__localfilter_160.mrc as #3, grid size 160,160,160,
pixel 0.83, shown at level 0.134, step 1, values float32
Opened cryosparc_P4_J55__localfilter_160.mrc as #5, grid size 160,160,160,
pixel 0.83, shown at level 0.136, step 1, values float32
Opened rOAT1-AKG_8bw7_emd_16280.map as #7, grid size 288,288,288, pixel 0.832,
shown at level 0.514, step 1, values float32
Opened rOAT1-AKG_8omu_emd_16977.map as #9, grid size 288,288,288, pixel 0.832,
shown at level 0.397, step 1, values float32
Opened rOAT1-apo_8bvr_emd_16269.map as #11, grid size 288,288,288, pixel
0.832, shown at level 0.628, step 1, values float32
Opened rOAT1-PBD_8bvt_emd_16271.map as #13, grid size 288,288,288, pixel
0.832, shown at level 0.182, step 2, values float32
Opened rOAT1-TFV_8bvs_emd_16270.map as #15, grid size 288,288,288, pixel
0.832, shown at level 0.191, step 2, values float32
Log from Fri Jul 21 12:35:41 2023UCSF ChimeraX version: 1.6 (2023-03-23)
© 2016-2023 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/dout2/Downloads/cryosparc_P19_J22__localfilter.mrc format mrc
Opened cryosparc_P19_J22__localfilter.mrc as #1, grid size 256,256,256, pixel
0.83, shown at level 0.0383, step 1, values float32
> close session
> open
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/rOAT1-apo_8bvr_emd_16269.map
Opened rOAT1-apo_8bvr_emd_16269.map as #1, grid size 288,288,288, pixel 0.832,
shown at level 0.196, step 2, values float32
> volume #1 step 1
> volume #1 level 0.5376
> close #1
> open EMD-16271
'EMD-16271' has no suffix
> open 8bvt
Summary of feedback from opening 8bvt fetched from pdb
---
notes | Fetching compressed mmCIF 8bvt from
http://files.rcsb.org/download/8bvt.cif
Fetching CCD RTO from
https://files.wwpdb.org/pub/pdb/refdata/chem_comp/O/RTO/RTO.cif
8bvt title:
Cryo-EM structure of rat SLC22A6 bound to probenecid [more info...]
Chain information for 8bvt #1
---
Chain | Description | UniProt
A | Solute carrier family 22 member 6 | S22A6_RAT 1-541
B | Synthetic nanobody (Sybody) |
Non-standard residues in 8bvt #1
---
RTO — 4-(dipropylsulfamoyl)benzoic acid
> open 16721
'16721' has no suffix
> open emdb:16721
Summary of feedback from opening 16721 fetched from emdb
---
note | Fetching compressed map 16721 from
ftp://ftp.ebi.ac.uk/pub/databases/emdb/structures/EMD-16721/map/emd_16721.map.gz
Opened emdb 16721 as #2, grid size 320,320,320, pixel 1.19, shown at level
0.00406, step 2, values float32
> volume #2 step 1
> volume #2 level 0.004057
> volume #2 level 0.006513
> volume #2 level 0.00849
> set bgColor white
> close #2
> open emd:16721
No such database 'emd'
> open
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/rOAT1-PBD_8bvt_emd_16271.map
Opened rOAT1-PBD_8bvt_emd_16271.map as #2, grid size 288,288,288, pixel 0.832,
shown at level 0.182, step 2, values float32
> open
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/rOAT1-PBD_8bvt.pdb
rOAT1-PBD_8bvt.pdb title:
Cryo-em structure of rat SLC22A6 bound to probenecid [more info...]
Chain information for rOAT1-PBD_8bvt.pdb #3
---
Chain | Description | UniProt
A | solute carrier family 22 member 6 | S22A6_RAT 1-541
B | synthetic nanobody (sybody) |
Non-standard residues in rOAT1-PBD_8bvt.pdb #3
---
RTO — 4-(dipropylsulfamoyl)benzoic acid
> close #1
> volume #2 step 1
> volume #2 level 0.3522
> close #2-3
> open
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/OAT1/cryoEM/rOAT1-apo_20220519_cryoSPARC/model/rOAT1-apo-
> coot-4_real_space_refined_004.pdb
Chain information for rOAT1-apo-coot-4_real_space_refined_004.pdb #1
---
Chain | Description
A | No description available
> open
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/OAT1/cryoEM/rOAT1-apo_20220519_cryoSPARC/J12_2.05A_clip-240/cryosparc_P4_J16__localfilter_240.mrc
Opened cryosparc_P4_J16__localfilter_240.mrc as #2, grid size 240,240,240,
pixel 0.553, shown at level 0.238, step 1, values float32
> open
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/OAT1/cryoEM/rOAT1-PAH_20220730_20230218/cryosparc_P4_J89__localfilter_160.mrc
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/OAT1/cryoEM/rOAT1-PAH_20220730_20230218/rOAT1-PAH-
> coot-7_real_space_refined_007.pdb
Opened cryosparc_P4_J89__localfilter_160.mrc as #3, grid size 160,160,160,
pixel 0.83, shown at level 0.134, step 1, values float32
Chain information for rOAT1-PAH-coot-7_real_space_refined_007.pdb #4
---
Chain | Description
A | No description available
> open
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/OAT1/cryoEM/rOAT1-PBD_20230217/cryosparc_P4_J55__localfilter_160.mrc
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/OAT1/cryoEM/rOAT1-PBD_20230217/rOAT1-PBD-
> coot-4_real_space_refined_004.pdb
Opened cryosparc_P4_J55__localfilter_160.mrc as #5, grid size 160,160,160,
pixel 0.83, shown at level 0.131, step 1, values float32
Chain information for rOAT1-PBD-coot-4_real_space_refined_004.pdb #6
---
Chain | Description
A | No description available
> open
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/rOAT1-AKG_8bw7_emd_16280.map
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/rOAT1-AKG_8bw7.pdb
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/rOAT1-AKG_8omu_emd_16977.map
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/rOAT1-AKG_8omu.pdb
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/rOAT1-apo_8bvr_emd_16269.map
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/rOAT1-apo_8bvr.pdb
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/rOAT1-PBD_8bvt_emd_16271.map
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/rOAT1-PBD_8bvt.pdb
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/rOAT1-TFV_8bvs_emd_16270.map
> /Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/rOAT1-TFV_8bvs.pdb
Opened rOAT1-AKG_8bw7_emd_16280.map as #7, grid size 288,288,288, pixel 0.832,
shown at level 0.199, step 2, values float32
rOAT1-AKG_8bw7.pdb title:
Cryo-em structure of rat SLC22A6 bound to α-ketoglutaric acid [more info...]
Chain information for rOAT1-AKG_8bw7.pdb #8
---
Chain | Description | UniProt
A | solute carrier family 22 member 6 | S22A6_RAT 1-542
B | synthetic nanobody (sybody) |
Non-standard residues in rOAT1-AKG_8bw7.pdb #8
---
AKG — 2-oxoglutaric acid
CL — chloride ion
Opened rOAT1-AKG_8omu_emd_16977.map as #9, grid size 288,288,288, pixel 0.832,
shown at level 0.196, step 2, values float32
rOAT1-AKG_8omu.pdb title:
Cryo-em structure of rat SLC22A6 bound to α-ketoglutaric acid In A low
occupancy state [more info...]
Chain information for rOAT1-AKG_8omu.pdb #10
---
Chain | Description | UniProt
A | solute carrier family 22 member 6 | S22A6_RAT 1-541
B | synthetic nanobody (sybody) |
Opened rOAT1-apo_8bvr_emd_16269.map as #11, grid size 288,288,288, pixel
0.832, shown at level 0.196, step 2, values float32
rOAT1-apo_8bvr.pdb title:
Cryo-em structure of rat SLC22A6 In the apo state [more info...]
Chain information for rOAT1-apo_8bvr.pdb #12
---
Chain | Description | UniProt
A | solute carrier family 22 member 6 | S22A6_RAT 1-542
B | synthetic nanobody (sybody) |
Non-standard residues in rOAT1-apo_8bvr.pdb #12
---
PO4 — phosphate ion
Opened rOAT1-PBD_8bvt_emd_16271.map as #13, grid size 288,288,288, pixel
0.832, shown at level 0.182, step 2, values float32
rOAT1-PBD_8bvt.pdb title:
Cryo-em structure of rat SLC22A6 bound to probenecid [more info...]
Chain information for rOAT1-PBD_8bvt.pdb #14
---
Chain | Description | UniProt
A | solute carrier family 22 member 6 | S22A6_RAT 1-541
B | synthetic nanobody (sybody) |
Non-standard residues in rOAT1-PBD_8bvt.pdb #14
---
RTO — 4-(dipropylsulfamoyl)benzoic acid
Opened rOAT1-TFV_8bvs_emd_16270.map as #15, grid size 288,288,288, pixel
0.832, shown at level 0.191, step 2, values float32
rOAT1-TFV_8bvs.pdb title:
Cryo-em structure of rat SLC22A6 bound to tenofovir [more info...]
Chain information for rOAT1-TFV_8bvs.pdb #16
---
Chain | Description | UniProt
A | solute carrier family 22 member 6 | S22A6_RAT 1-542
B | synthetic nanobody (sybody) |
Non-standard residues in rOAT1-TFV_8bvs.pdb #16
---
CL — chloride ion
TFO — [2-(6-amino-9H-purin-9-yl)-1-methylethoxy]methylphosphonic acid
(tenofovir)
> hide #1 models
> hide #!2 models
> hide #!3 models
> hide #!4 models
> hide #!5 models
> hide #6 models
> hide #!7 models
> hide #!8 models
> hide #!9 models
> hide #!10 models
> hide #!11 models
> hide #!12 models
> hide #!13 models
> hide #!14 models
> hide #!15 models
> hide #!16 models
> show #!7 models
> show #!8 models
> volume #5 level 0.1359
> volume #7 step 1
> volume #7 level 0.3473
> volume #7 level 1.729
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
10 atoms, 9 bonds, 1 residue, 1 model selected
> volume #7 level 0.6347
> volume #7 level 0.3844
> volume #7 level 0.5698
> view sel
> volume #7 color #b2b2ffb3
> select #8:442
11 atoms, 11 bonds, 1 residue, 1 model selected
> show sel atoms
> select #8:438
11 atoms, 11 bonds, 1 residue, 1 model selected
> show sel atoms
> select
> #8:28,31,35,142,145,200,203,204,207,223,226,227,230,231,234,346,350,353,354,378,382,435,438,439,442,462,465,466,469
255 atoms, 237 bonds, 32 residues, 1 model selected
> show sel atoms
> volume #7 level 0.5698
> select clear
> lighting soft
[Repeated 1 time(s)]
> lighting simple
> lighting soft
> lighting simple
> lighting soft
> lighting simple
> lighting soft
> lighting simple
> lighting soft
> lighting simple
> lighting soft
> lighting simple
> volume #7 style mesh
> volume #7 style surface
> volume #7 style mesh
> volume #1 style mesh level 0.8
No volumes specified
> volume #7 style mesh level 0.8
> volume #7 style mesh level 1
> volume #7 level 0.4901
> volume #7 style mesh level 1 color red level 1.2 color 0,50,80
> volume #7 level 1 level 1.2
> volume #7 level 0.9073 level 1.2
> volume #7 style mesh level
Missing "level" keyword's argument
> hide #!7 models
> show #!7 models
> hide #!7 models
> show #!7 models
> close #7.1-2
> hide #7 models
> show #7 models
> volume #7 level 0.7554
> select up
10 atoms, 9 bonds, 1 residue, 1 model selected
> view sel
> select clear
> volume #7 level 0.5143
> volume #7 color #b2b2ff85
> select
> #8:28,31,35,142,145,200,203,204,207,223,226,227,230,231,234,346,350,353,354,378,382,435,438,439,442,462,465,466,469
255 atoms, 237 bonds, 32 residues, 1 model selected
> show sel atoms
> select clear
> hide #!8 models
> hide #!7 models
> show #!10 models
> show #!9 models
> select add #10
4737 atoms, 4854 bonds, 2 pseudobonds, 612 residues, 2 models selected
> view sel
> volume #9 step 1
> volume #9 level 0.3973
> hide #!10 models
> select subtract #10
Nothing selected
> show #!10 models
> hide #!9 models
> show #!11 models
> volume #11 step 1
> volume #11 level 0.6276
> show #!8 models
> hide #!8 models
> hide #!11 models
> hide #!10 models
> save "/Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/Compare
> with our structure.cxs" includeMaps true
——— End of log from Fri Jul 21 12:35:41 2023 ———
opened ChimeraX session
> show #!2 models
> hide #!2 models
> show #1 models
> view
> hide #1 models
> show #!4 models
> hide #!4 models
> show #6 models
> select clear
> select #6/B:601@O10
1 atom, 1 residue, 1 model selected
> select up
19 atoms, 19 bonds, 1 residue, 1 model selected
> view sel
> show #!14 models
> view
> ui tool show Matchmaker
> matchmaker #!14 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-PBD_8bvt.pdb, chain A (#14), sequence alignment score = 2439.7
RMSD between 487 pruned atom pairs is 0.832 angstroms; (across all 498 pairs:
0.989)
> view matrix models #6,1,0,0,-1.377,0,1,0,0.17197,0,0,1,-0.2168
> select clear
[Repeated 1 time(s)]
> select #6/B:601@C17
1 atom, 1 residue, 1 model selected
> select up
19 atoms, 19 bonds, 1 residue, 1 model selected
> view sel
> matchmaker #!8 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-AKG_8bw7.pdb, chain A (#8), sequence alignment score = 2492.5
RMSD between 483 pruned atom pairs is 0.880 angstroms; (across all 492 pairs:
0.934)
> matchmaker #!10 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-AKG_8omu.pdb, chain A (#10), sequence alignment score = 2456.5
RMSD between 480 pruned atom pairs is 0.876 angstroms; (across all 492 pairs:
0.968)
> matchmaker #!12 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-apo_8bvr.pdb, chain A (#12), sequence alignment score = 2447.5
RMSD between 481 pruned atom pairs is 0.838 angstroms; (across all 495 pairs:
0.921)
> matchmaker #!16 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-TFV_8bvs.pdb, chain A (#16), sequence alignment score = 2464.3
RMSD between 483 pruned atom pairs is 0.804 angstroms; (across all 495 pairs:
0.869)
> show #!16 models
> hide #!16 models
> show #!16 models
> hide #!16 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!12 models
> show #!16 models
> select
> #6/A:28,31,35,142,145,200,203,204,207,223,226,227,230,231,234,346,350,353,354,378,382,435,438,439,442,462,465,466,469
232 atoms, 216 bonds, 29 residues, 1 model selected
> show sel atoms
> save "/Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/Compare
> with our structure.cxs" includeMaps true
> color #16 #8b7338ff
> color #16 #897338ff
> color #16 #897354ff
> color #16 #89735fff
> color #16 #89805fff
> color #16 #896e5fff
> color #16 #926e5fff
> color #16 #9b6e5fff
> select add #6
3905 atoms, 3985 bonds, 515 residues, 1 model selected
> select subtract #6
Nothing selected
> select add #16
4799 atoms, 4916 bonds, 2 pseudobonds, 619 residues, 2 models selected
> color (#!16 & sel) byhetero
> select
> #/A:28,31,35,142,145,200,203,204,207,223,226,227,230,231,234,346,350,353,354,378,382,435,438,439,442,462,465,466,469
Expected an objects specifier or a keyword
> select
> :28,31,35,142,145,200,203,204,207,223,226,227,230,231,234,346,350,353,354,378,382,435,438,439,442,462,465,466,469
1966 atoms, 1824 bonds, 250 residues, 8 models selected
> show sel & #6#!14,16 atoms
> hide #!16 models
> hide #!14 models
> show #!14 models
> matchmaker #!14 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-PBD_8bvt.pdb, chain A (#14), sequence alignment score = 2439.7
RMSD between 487 pruned atom pairs is 0.832 angstroms; (across all 498 pairs:
0.989)
> matchmaker #!16 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-TFV_8bvs.pdb, chain A (#16), sequence alignment score = 2464.3
RMSD between 483 pruned atom pairs is 0.804 angstroms; (across all 495 pairs:
0.869)
> matchmaker #!12 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-apo_8bvr.pdb, chain A (#12), sequence alignment score = 2447.5
RMSD between 481 pruned atom pairs is 0.838 angstroms; (across all 495 pairs:
0.921)
> matchmaker #!10 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-AKG_8omu.pdb, chain A (#10), sequence alignment score = 2456.5
RMSD between 480 pruned atom pairs is 0.876 angstroms; (across all 492 pairs:
0.968)
> matchmaker #!8 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-AKG_8bw7.pdb, chain A (#8), sequence alignment score = 2492.5
RMSD between 483 pruned atom pairs is 0.880 angstroms; (across all 492 pairs:
0.934)
> hide #!14 models
> show #!16 models
> hide #6 models
> show #!14 models
> hide #!14 models
> hide #!16 models
> show #6 models
> select clear
> show #!14 models
> lighting soft
> show #!10 models
> select ::name="AKG"
10 atoms, 9 bonds, 1 residue, 1 model selected
> view sel
> show #6#!10,14 atoms
> undo
> select ::name="AKG"
10 atoms, 9 bonds, 1 residue, 1 model selected
> show #6#!10,14 atoms
> undo
> view
> hide #!14 models
> hide #6 models
> show #!8 models
> hide #!10 models
> show #!14 models
> show #6 models
> hide #!8 models
> select add #8
4748 atoms, 4863 bonds, 2 pseudobonds, 614 residues, 2 models selected
> select subtract #8
Nothing selected
> hide #!14 models
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
19 atoms, 19 bonds, 1 residue, 1 model selected
> view sel
> show #!8 models
> hide #!8 models
> show #!8 models
> show #!14 models
> show #!16 models
> show #!12 models
> hide #!12 models
> show #!12 models
> hide #!8 models
> show #!8 models
> hide #!12 models
> select ::name="CL"
2 atoms, 2 residues, 2 models selected
> show sel atoms
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select clear
> select #16/A:602@CL
1 atom, 1 residue, 1 model selected
> select #16/A:602@CL
1 atom, 1 residue, 1 model selected
> select clear
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select clear
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select #8/A:602@CL
1 atom, 1 residue, 1 model selected
> select clear
> select #16/A:602@CL
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select add #14
4518 atoms, 4615 bonds, 2 pseudobonds, 625 residues, 3 models selected
> select subtract #14
1 atom, 1 residue, 1 model selected
> select add #16
4799 atoms, 4916 bonds, 2 pseudobonds, 619 residues, 2 models selected
> select add #14
9316 atoms, 9531 bonds, 4 pseudobonds, 1243 residues, 4 models selected
> select add #12
14110 atoms, 14439 bonds, 6 pseudobonds, 1863 residues, 6 models selected
> select add #8
18858 atoms, 19302 bonds, 8 pseudobonds, 2477 residues, 8 models selected
> select add #6
22763 atoms, 23287 bonds, 8 pseudobonds, 2992 residues, 9 models selected
> select subtract #12
17969 atoms, 18379 bonds, 6 pseudobonds, 2372 residues, 7 models selected
> hide sel atoms
> select ::name="AKG"
10 atoms, 9 bonds, 1 residue, 1 model selected
> show sel atoms
> select ::name="CL"
2 atoms, 2 residues, 2 models selected
> show sel atoms
> select add #16
4800 atoms, 4916 bonds, 2 pseudobonds, 620 residues, 3 models selected
> select subtract #16
1 atom, 1 residue, 1 model selected
> select #16/A:602@CL
1 atom, 1 residue, 1 model selected
> select #16/A:602@CL
1 atom, 1 residue, 1 model selected
> select clear
> select #16/A:602@CL
1 atom, 1 residue, 1 model selected
> hide sel atoms
> select ::name="LIG"
42 atoms, 42 bonds, 2 residues, 2 models selected
> show sel & #6 atoms
> select ::name="RTO"
19 atoms, 19 bonds, 1 residue, 1 model selected
> show sel atoms
> select ::name="TFO"
19 atoms, 20 bonds, 1 residue, 1 model selected
> show sel atoms
> select clear
> hide #!16 models
> show #!16 models
> hide #!16 models
> hide #!14 models
> show #!14 models
> show #!16 models
> hide #6 models
> show #6 models
> show #!4 models
> select clear
[Repeated 3 time(s)]
> select up
2 atoms, 1 bond, 1 residue, 1 model selected
> select up
11 atoms, 10 bonds, 1 residue, 1 model selected
> hide sel atoms
[Repeated 1 time(s)]
> show sel atoms
> hide sel atoms
> movie record
> turn y 2 180
> wait 180
> movie encode /Users/dout2/Desktop/movie1.mp4
Movie saved to /Users/dout2/Desktop/movie1.mp4
> hide #!16 models
> hide #!14 models
> hide #!8 models
> hide #6 models
> show #6 models
> select
> :28,31,35,142,145,200,203,204,207,223,226,227,230,231,234,346,350,353,354,378,382,435,438,439,442,462,465,466,469
1966 atoms, 1824 bonds, 250 residues, 8 models selected
> show sel & #6#!4 atoms
> hide sel & #6#!4 atoms
> show #!16 models
> show #!14 models
> show #!10 models
> hide #!10 models
> show #!8 models
> show #1 models
> view
> select clear
Drag select of 23 residues
> select clear
[Repeated 1 time(s)]
> matchmaker #1 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-apo-coot-4_real_space_refined_004.pdb, chain A (#1), sequence alignment
score = 2582.7
RMSD between 500 pruned atom pairs is 0.389 angstroms; (across all 500 pairs:
0.389)
> matchmaker #1 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-apo-coot-4_real_space_refined_004.pdb, chain A (#1), sequence alignment
score = 2582.7
RMSD between 500 pruned atom pairs is 0.389 angstroms; (across all 500 pairs:
0.389)
> matchmaker #1 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-apo-coot-4_real_space_refined_004.pdb, chain A (#1), sequence alignment
score = 2582.7
RMSD between 500 pruned atom pairs is 0.389 angstroms; (across all 500 pairs:
0.389)
> matchmaker #!4 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-PAH-coot-7_real_space_refined_007.pdb, chain A (#4), sequence alignment
score = 2547.2
RMSD between 494 pruned atom pairs is 0.541 angstroms; (across all 494 pairs:
0.541)
> matchmaker #!8 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-AKG_8bw7.pdb, chain A (#8), sequence alignment score = 2492.5
RMSD between 483 pruned atom pairs is 0.880 angstroms; (across all 492 pairs:
0.934)
> matchmaker #!10 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-AKG_8omu.pdb, chain A (#10), sequence alignment score = 2456.5
RMSD between 480 pruned atom pairs is 0.876 angstroms; (across all 492 pairs:
0.968)
> matchmaker #!12 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-apo_8bvr.pdb, chain A (#12), sequence alignment score = 2447.5
RMSD between 481 pruned atom pairs is 0.838 angstroms; (across all 495 pairs:
0.921)
> matchmaker #!14 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-PBD_8bvt.pdb, chain A (#14), sequence alignment score = 2439.7
RMSD between 487 pruned atom pairs is 0.832 angstroms; (across all 498 pairs:
0.989)
> matchmaker #!16 to #6
Parameters
---
Chain pairing | bb
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker rOAT1-PBD-coot-4_real_space_refined_004.pdb, chain A (#6) with
rOAT1-TFV_8bvs.pdb, chain A (#16), sequence alignment score = 2464.3
RMSD between 483 pruned atom pairs is 0.804 angstroms; (across all 495 pairs:
0.869)
> save "/Users/dout2/Documents/Manuscripts/rOAT1_2023/rOAT1_SimonLab/Compare
> with our structure.cxs" includeMaps true
——— End of log from Sun Aug 27 22:20:39 2023 ———
opened ChimeraX session
OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M2 Max
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.4.2, Qt 6.4.2
Qt runtime version: 6.4.3
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: Mac14,5
Model Number: MPHG3LL/A
Chip: Apple M2 Max
Total Number of Cores: 12 (8 performance and 4 efficiency)
Memory: 32 GB
System Firmware Version: 8422.141.2
OS Loader Version: 8422.141.2
Software:
System Software Overview:
System Version: macOS 13.5 (22G74)
Kernel Version: Darwin 22.6.0
Time since boot: 14 days, 43 minutes
Graphics/Displays:
Apple M2 Max:
Chipset Model: Apple M2 Max
Type: GPU
Bus: Built-In
Total Number of Cores: 30
Vendor: Apple (0x106b)
Metal Support: Metal 3
Displays:
Color LCD:
Display Type: Built-in Liquid Retina XDR Display
Resolution: 3024 x 1964 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
R240HY:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60.00Hz
Mirror: Off
Online: Yes
Rotation: Supported
Installed Packages:
alabaster: 0.7.13
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.2.1
Babel: 2.12.1
backcall: 0.2.0
beautifulsoup4: 4.11.2
blockdiag: 3.0.0
build: 0.10.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 3.1.0
ChimeraX-AddCharge: 1.5.9
ChimeraX-AddH: 2.2.3
ChimeraX-AlignmentAlgorithms: 2.0.1
ChimeraX-AlignmentHdrs: 3.3.1
ChimeraX-AlignmentMatrices: 2.1
ChimeraX-Alignments: 2.9.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.1
ChimeraX-Atomic: 1.43.10
ChimeraX-AtomicLibrary: 10.0.6
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3.2
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.8
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.2
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3.1
ChimeraX-ChemGroup: 2.0.1
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.3
ChimeraX-CommandLine: 1.2.5
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.6
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.4.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.3
ChimeraX-Dicom: 1.2
ChimeraX-DistMonitor: 1.3.3
ChimeraX-DockPrep: 1.1.1
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ESMFold: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.3
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.4
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0.1
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.2
ChimeraX-MatchMaker: 2.0.12
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1.1
ChimeraX-mmCIF: 2.12
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.9
ChimeraX-ModelPanel: 1.3.7
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.2
ChimeraX-MouseModes: 1.2
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nifti: 1.0
ChimeraX-NRRD: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.10.1
ChimeraX-PDB: 2.7
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenderByAttr: 1.1
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 3.0
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0.1
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0.1
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.8.3
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10.2
ChimeraX-STL: 1.0.1
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0.1
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Topography: 1.0
ChimeraX-ToQuest: 1.0
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.28.4
ChimeraX-uniprot: 2.2.2
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.2
ChimeraX-WebServices: 1.1.1
ChimeraX-Zone: 1.0.1
colorama: 0.4.6
comm: 0.1.3
contourpy: 1.0.7
cxservices: 1.2.2
cycler: 0.11.0
Cython: 0.29.33
debugpy: 1.6.7
decorator: 5.1.1
docutils: 0.19
executing: 1.2.0
filelock: 3.9.0
fonttools: 4.39.3
funcparserlib: 1.0.1
grako: 3.16.5
h5py: 3.8.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.35
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 6.6.0
ipykernel: 6.21.1
ipython: 8.10.0
ipython-genutils: 0.2.0
ipywidgets: 8.0.6
jedi: 0.18.2
Jinja2: 3.1.2
jupyter-client: 8.0.2
jupyter-core: 5.3.0
jupyterlab-widgets: 3.0.7
kiwisolver: 1.4.4
line-profiler: 4.0.2
lxml: 4.9.2
lz4: 4.3.2
MarkupSafe: 2.1.2
matplotlib: 3.6.3
matplotlib-inline: 0.1.6
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.2
networkx: 2.8.8
nibabel: 5.0.1
nptyping: 2.5.0
numexpr: 2.8.4
numpy: 1.23.5
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.3.0
pip: 23.0
pkginfo: 1.9.6
platformdirs: 3.5.0
prompt-toolkit: 3.0.38
psutil: 5.9.4
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.14.0
pynrrd: 1.0.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
pyproject-hooks: 1.0.0
PyQt6-commercial: 6.4.2
PyQt6-Qt6: 6.4.3
PyQt6-sip: 13.4.1
PyQt6-WebEngine-commercial: 6.4.0
PyQt6-WebEngine-Qt6: 6.4.3
python-dateutil: 2.8.2
pytz: 2023.3
pyzmq: 25.0.2
qtconsole: 5.4.0
QtPy: 2.3.1
RandomWords: 0.4.0
requests: 2.28.2
scipy: 1.9.3
setuptools: 67.4.0
setuptools-scm: 7.0.5
sfftk-rw: 0.7.3
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
soupsieve: 2.4.1
sphinx: 6.1.3
sphinx-autodoc-typehints: 1.22
sphinxcontrib-applehelp: 1.0.4
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.1
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.6.2
tables: 3.7.0
tcia-utils: 1.2.0
tifffile: 2022.10.10
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.3.1
traitlets: 5.9.0
typing-extensions: 4.5.0
tzdata: 2023.3
urllib3: 1.26.15
wcwidth: 0.2.6
webcolors: 1.12
wheel: 0.38.4
wheel-filename: 1.4.1
widgetsnbextension: 4.0.7
zipp: 3.15.0
Change History (2)
comment:1 by , 2 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Window Toolkit |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crashed in QTabBar::paintEvent(), QPainter::begin: Paint device returned engine == 0 |
comment:2 by , 2 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | accepted → closed |
Note:
See TracTickets
for help on using tickets.
