![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Oct 27, 2022:
- 8:20 PM Ticket #7907 (Allow Collada scene export) created by
- Kristen said at today's NIAID / ChimeraX meeting that in addition to …
- 8:15 PM NIAID2022 edited by
- (diff)
- 7:45 PM 2022-10-27 edited by
- (diff)
- 7:34 PM Ticket #7905 (Bus Error computing surface of 2cse biological assembly) closed by
- limitation: I duplicated this crash and reported in #7906. It is using 69 Gbytes …
- 7:20 PM Ticket #7906 (Crash making SES surface for 1 million atom 2cse virus) closed by
- duplicate
- 7:14 PM Ticket #7906 (Crash making SES surface for 1 million atom 2cse virus) created by
- […] ChimeraX-2022-10-27-190959.ips
- 6:49 PM Ticket #7895 (Graphics crash, macOS 12.6, Intel Iris Plus Graphics 645) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 6:25 PM Ticket #7905 (Bus Error computing surface of 2cse biological assembly) created by
- […]
- 5:57 PM Ticket #7882 (MatchMaker: 'NoneType' object has no attribute 'setChecked') closed by
- fixed: Fix will be in tomorrow's release candidate and daily build. Fix: …
- 4:16 PM Ticket #7748 (Cloud documentation) closed by
- fixed: https://chimerax.readthedocs.io/en/latest/
- 4:11 PM Ticket #7858 (pip command puts packages in ~/Library/Python and not ...) closed by
- fixed: Fixed in …
- 3:55 PM Ticket #7904 (RCSB biological unit: PDBx/mmCIF styling lost) created by
- Opening the attached biological unit downloaded from the RCSB results …
- 3:15 PM Ticket #7903 (Info from sym command) created by
- It would be useful if the sym command reported how many copies it …
- 3:09 PM Ticket #7381 (ISOLDE GUI startup: __init__() got an unexpected keyword argument ...) closed by
- fixed: See https://peps.python.org/pep-0440/#compatible-release. …
- 3:00 PM Ticket #7830 (Can't install ChimeraX 1.5 on Ubuntu 22) closed by
- fixed: This is fixed. And is in the daily builds since October 21st.
- 2:37 PM Ticket #7902 (Crash destroying tool during garbage collection) created by
- […]
- 2:20 PM Ticket #7810 (UNK residues that should not be UNK) closed by
- nonchimerax: The RCSB will be releasing a corrected version of 3j5q next week..
- 2:19 PM Ticket #7888 (Grouping model hidden) closed by
- fixed: The fixed bundle is on the Toolshed now. Will mail the wheel separately.
- 2:10 PM NIAID2022 edited by
- (diff)
- 2:06 PM Ticket #7901 (PDB QS 2CSE) created by
- […] logs (10).txt
- 2:05 PM Ticket #7900 (4v4u.cif hangs then fails) created by
- […] logs (9).txt 4v4u.cif
- 2:02 PM Ticket #7899 (FW: Hanging on PDB file) created by
- […] 1fvm-monomer-blue.pdb logs (8).txt
- 2:02 PM Ticket #7898 (FW: Hanging QS PDB 6CGV) created by
- […] logs (7).txt
- 1:33 PM Ticket #7897 (Hanging 6B1T) created by
- […] logs (6).txt
- 1:32 PM NIAID2022 edited by
- (diff)
- 1:30 PM NIAID2022 edited by
- (diff)
- 12:54 PM Ticket #7896 (DICOM: volume models not assigned unique colors) created by
- If you open a DICOM folder with more than one series, they are all …
- 12:10 PM Dev2022-10-27 edited by
- (diff)
- 11:24 AM Dev2022-10-27 edited by
- (diff)
- 11:22 AM Ticket #7895 (Graphics crash, macOS 12.6, Intel Iris Plus Graphics 645) created by
- […]
- 11:07 AM Dev2022-10-27 created by
- 11:05 AM DeveloperMeetings edited by
- (diff)
- 11:02 AM Ticket #7889 (Error for render involving missing attrs) closed by
- fixed: Wasn't handling structures where the attribute was missing correctly.
- 10:23 AM Ticket #7894 (Probable hang on Linux) closed by
- can't reproduce
- 10:21 AM Ticket #7893 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 10:20 AM Ticket #7892 (Negative decimal places for distance format) closed by
- duplicate: Duplicate #7881
- 6:57 AM Ticket #7894 (Probable hang on Linux) created by
- […]
- 4:26 AM Ticket #7893 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
Oct 26, 2022:
- 6:54 PM Ticket #7884 (CIF file: atom_site category: Missing column 'label_asym_id) closed by
- limitation: This is a limitation. Added a warning saying small-molecule CIF files …
- 5:17 PM Ticket #7892 (Negative decimal places for distance format) created by
- […]
- 5:09 PM Ticket #7891 (hide/show slow with many structures) created by
- Using the 14,000 structure Mol2 file attached to ticket #7890 and with …
- 5:06 PM Ticket #7890 (Slow Mol2 reading) created by
- Reading the attached 14,000 structure Mol2 file takes >6 minutes on my …
- 4:45 PM Ticket #7889 (Error for render involving missing attrs) created by
- […] 3models.cxs
- 2:14 PM Ticket #7888 (Grouping model hidden) created by
- […]
- 1:25 PM Ticket #7887 (ViewDockX error reading mol2 file: KeyError: None) closed by
- fixed: Fixed in next daily build and 1.5 release candidate: …
- 12:09 PM Ticket #7887 (ViewDockX error reading mol2 file: KeyError: None) created by
- […] AcCAA.mol2
- 11:48 AM Ticket #7886 (Optional PDB fields) created by
- Have optional/variant PDB fields like segment ID, formal charge, etc. …
- 11:42 AM Ticket #7885 (unwanted whole-chain selection) created by
- […]
- 11:17 AM Ticket #7884 (CIF file: atom_site category: Missing column 'label_asym_id) created by
- […] 9253.cif
- 10:56 AM Ticket #7877 (Graphics crash, macOS 12.4, Intel Iris Plus Graphics 645) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:52 AM Ticket #7871 (Graphics crash, macOS 11.4, Intel Iris Plus Graphics) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 10:03 AM Ticket #7883 (Saving various files: No space left on device) closed by
- nonchimerax: In current versions of ChimeraX, this will be a UserError
- 9:23 AM Ticket #7881 (Negative decimal places for distance format) closed by
- can't reproduce: If negative decimal places was indeed the problem, I don't know how …
- 9:09 AM Ticket #7880 (No error reported) closed by
- invalid
- 9:08 AM Ticket #7879 (Permission Denied saving MRC file) closed by
- fixed: In current versions, this is a UserError.
- 9:01 AM Ticket #7876 (Crash destroying Qt widget during garbage collection) closed by
- can't reproduce: Seems to be correlated with using XMAS
- 5:08 AM Ticket #7883 (Saving various files: No space left on device) created by
- […]
- 2:43 AM Ticket #7882 (MatchMaker: 'NoneType' object has no attribute 'setChecked') created by
- […]
- 2:25 AM Ticket #7881 (Negative decimal places for distance format) created by
- […]
- 12:24 AM Ticket #7880 (No error reported) created by
- […]
Oct 25, 2022:
- 8:32 PM Ticket #7879 (Permission Denied saving MRC file) created by
- […]
- 6:11 PM Ticket #5366 (Volume contour level for NIH 3D printable surface) closed by
- fixed
- 6:11 PM Ticket #5366 (Volume contour level for NIH 3D printable surface) reopened by
- 5:59 PM Ticket #5366 (Volume contour level for NIH 3D printable surface) closed by
- fixed: The current code detects if the threshold level hides two much of the …
- 5:34 PM Ticket #7863 (Histogram: super(type, obj): obj must be an instance or subtype of type) closed by
- fixed
- 4:46 PM Ticket #7878 ('show' unexpectedly showing whole chains) created by
- […]
- 4:28 PM Ticket #7877 (Graphics crash, macOS 12.4, Intel Iris Plus Graphics 645) created by
- […]
- 4:24 PM ChangeLog edited by
- (diff)
- 4:23 PM ChangeLog edited by
- (diff)
- 4:22 PM ChangeLog edited by
- (diff)
- 2:56 PM Ticket #7876 (Crash destroying Qt widget during garbage collection) created by
- […]
- 2:31 PM Ticket #7875 (XMAS: AttributeError: 'Tabular' object has no attribute 'peptide_pairs') created by
- […]
- 2:26 PM Ticket #7715 (DICOM: TypeError: %d format: a number is required, not NoneType) closed by
- fixed: Left out the modality but did reword it to be more concise as in the …
- 2:23 PM Ticket #7860 (Add other bundles' lib dirs to rpaths) closed by
- fixed: I was able to build that bundle after adding the import to pdb_lib. So …
- 2:21 PM Ticket #7874 (Improve ambient shadows with transparent surface) created by
- […] 7rpi_surf.png
- 12:26 PM Ticket #7873 (ISOLDE: wrapped C/C++ object of type WinAutoResizeQComboBox has been ...) created by
- […]
- 11:57 AM Ticket #7872 (Add surface smooth command) closed by
- fixed: Done in ChimeraX daily builds, not in 1.5. Syntax is […] with …
- 11:53 AM Ticket #7872 (Add surface smooth command) created by
- Add the equivalent of the Chimera "sop smooth" command to smooth any …
- 11:27 AM Ticket #7871 (Graphics crash, macOS 11.4, Intel Iris Plus Graphics) created by
- […]
- 11:14 AM Ticket #7870 (Add segmentation surfaces smoothing) closed by
- fixed: Done. Added to ChimeraX 1.5 and daily builds. I added an option …
- 11:06 AM Ticket #7870 (Add segmentation surfaces smoothing) created by
- […]
- 10:10 AM 2022-10-27 created by
- 10:09 AM 2022-10-20 edited by
- (diff)
- 10:08 AM DeveloperMeetings edited by
- (diff)
- 9:12 AM Ticket #7869 (Problem fetching mmCIF template: URL can't contain control characters) closed by
- duplicate: duplicate of #6508
- 9:09 AM Ticket #7868 (Crash in modal dialog exec()) closed by
- can't reproduce
- 9:07 AM Ticket #7867 (Crash showing Rapid Access at startup) closed by
- can't reproduce: Seems to be Linux a lot
- 9:05 AM Ticket #7866 (Crash in event loop after MatchMaker) closed by
- can't reproduce
- 8:55 AM Ticket #7865 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:52 AM Ticket #7864 (Crash showing Rapid Access at startup) closed by
- can't reproduce
- 8:49 AM Ticket #7861 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:48 AM Ticket #7859 (Crash in event loop) closed by
- can't reproduce
- 7:15 AM Ticket #7869 (Problem fetching mmCIF template: URL can't contain control characters) created by
- […]
- 3:48 AM Ticket #7868 (Crash in modal dialog exec()) created by
- […]
- 2:49 AM Ticket #7867 (Crash showing Rapid Access at startup) created by
- […]
- 2:11 AM Ticket #7866 (Crash in event loop after MatchMaker) created by
- […]
- 1:48 AM Ticket #7865 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Oct 24, 2022:
- 6:29 PM Ticket #7864 (Crash showing Rapid Access at startup) created by
- […]
- 6:14 PM Ticket #7863 (Histogram: super(type, obj): obj must be an instance or subtype of type) created by
- […]
- 5:14 PM Ticket #7862 (No way to set segmentation colors when coloring image style volume) created by
- […]
- 4:57 PM Ticket #7861 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 4:51 PM Ticket #7860 (Add other bundles' lib dirs to rpaths) created by
- Trying to install mmcif into a virtual environment for readthedocs, I …
- 4:24 PM Dev2022-10-24 edited by
- (diff)
- 3:23 PM Ticket #7826 (Charge addition problem for FRD) closed by
- fixed: Due to an overzealous optimization, the backbone C of the FRD residue …
- 2:20 PM Ticket #7859 (Crash in event loop) created by
- […]
- 2:10 PM Ticket #7715 (DICOM: TypeError: %d format: a number is required, not NoneType) reopened by
- Mostly fixed but changing warning text as in comments 6 and 7 still to …
- 12:42 PM Ticket #7854 (Error opening ORCA file: KeyError: 'multiplicity') closed by
- fixed
- 12:01 PM Ticket #7728 (chimerax daily logs many errors in nogui mode) closed by
- fixed: I personally don't like imports in functions because in long (>500 …
- 11:47 AM Ticket #7856 (Crash saving PNG) closed by
- can't reproduce: I am not sure why ChimeraX crashed when saving an image. I don't …
- 11:37 AM Ticket #7849 (MPEG conversion failed) closed by
- not a bug: ffmpeg failed due to no disk space av_interleaved_write_frame(): No …
- 11:35 AM Ticket #7858 (pip command puts packages in ~/Library/Python and not ...) created by
- 11:08 AM Ticket #7827 (Hydrogen added to C terminus) closed by
- fixed: Was expecting the OXT to be missing, not the O. Now the code handles …
- 9:39 AM Ticket #7855 (Version conflict opening MTZ file in 1.5) closed by
- duplicate: Sorry about this - due to my misunderstanding of the Python dependency …
- 9:38 AM Ticket #7853 (transparency not working) closed by
- not a bug: Hello Guipeun Kang, Your transparency command is wrong ... should be …
- 9:28 AM Ticket #7852 ('Sequence' object has no attribute 'structure') closed by
- duplicate: Essentially a duplicate of #7851
- 8:59 AM Ticket #7850 (MPEG conversion failed) closed by
- duplicate
- 8:00 AM Ticket #7857 (OpenMM binary compatibility) created by
- […]
- 3:43 AM Ticket #7856 (Crash saving PNG) created by
- […]
- 2:46 AM Ticket #7855 (Version conflict opening MTZ file in 1.5) created by
- […]
Oct 23, 2022:
- 11:36 AM Ticket #7854 (Error opening ORCA file: KeyError: 'multiplicity') created by
- […] test.out
- 11:30 AM Ticket #7853 (transparency not working) created by
- […] [[Image(...)]]
- 7:08 AM Ticket #7852 ('Sequence' object has no attribute 'structure') created by
- […]
- 7:07 AM Ticket #7851 ('Sequence' object has no attribute 'structure') created by
- […]
- 1:52 AM Ticket #7850 (MPEG conversion failed) created by
- […]
- 1:52 AM Ticket #7849 (MPEG conversion failed) created by
- […]
Oct 21, 2022:
- 1:54 PM Ticket #7833 (problems w/ complex atomspec in "show" command) closed by
- fixed: Fixed in 1.6 and daily builds. Not in 1.5. Structure atomspec_zone() …
- 1:36 PM Ticket #7847 (typed command text erased) closed by
- fixed: Fix …
- 11:32 AM Ticket #7839 (Save MRC file: could not broadcast input array from shape) closed by
- not a bug: This error saving an MRC file is because the original map file whose …
- 11:14 AM Ticket #7848 (log errors/warning don't go to log tool if there are startup args) created by
- Startup errors/warnings are not shown in the log tool if there are …
- 10:55 AM Ticket #7821 (Crash showing Rapid access at startup) closed by
- can't reproduce
- 10:55 AM Ticket #7821 (Crash showing Rapid access at startup) reopened by
- 10:50 AM Ticket #7821 (Crash showing Rapid access at startup) closed by
- fixed: Removed the workaround (which simplifies the code).
- 10:31 AM Ticket #7847 (typed command text erased) created by
- […]
- 10:27 AM Ticket #7846 (Crash destroying Qt widget during garbage collection) closed by
- can't reproduce: Possibly related to XMAS
- 10:26 AM Ticket #7846 (Crash destroying Qt widget during garbage collection) created by
- […]
- 10:24 AM Ticket #7845 (Crash in event loop in NSTextInputContext) closed by
- can't reproduce
- 10:23 AM Ticket #7845 (Crash in event loop in NSTextInputContext) created by
- […]
- 10:23 AM Ticket #7844 (Crash in event loop in NSTextInputContext) closed by
- can't reproduce
- 10:21 AM Ticket #7844 (Crash in event loop in NSTextInputContext) created by
- […]
- 10:13 AM Ticket #7843 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:12 AM Ticket #7843 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 9:29 AM Ticket #7842 (Crash in garbage collection) closed by
- can't reproduce
- 9:27 AM Ticket #7842 (Crash in garbage collection) created by
- […]
- 9:26 AM Ticket #7841 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.4, before Python upgrade
- 9:25 AM Ticket #7841 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 9:23 AM Ticket #7840 (Crash in event loop) closed by
- can't reproduce
- 6:13 AM Ticket #7840 (Crash in event loop) created by
- […]
- 3:00 AM Ticket #7839 (Save MRC file: could not broadcast input array from shape) created by
- […]
Oct 20, 2022:
- 10:07 PM Ticket #7266 (Renew Windows code signing certificate, expires July 29, 2022) closed by
- fixed: New renewal date is Jul 29 23:59:59 2025 GMT
- 7:10 PM 2022-10-20 edited by
- (diff)
- 5:35 PM Ticket #7838 (Shell: 'QContextMenuEvent' object has no attribute 'globalPosition') closed by
- can't reproduce: I tried with my mouse and couldn't reproduce it either. If it …
- 5:18 PM Ticket #7838 (Shell: 'QContextMenuEvent' object has no attribute 'globalPosition') created by
- […]
- 3:15 PM Ticket #7834 (Python shell: 'QContextMenuEvent' object has no attribute 'globalPosition') closed by
- can't reproduce: The error occurs in code that is in an "if event.type() == …
- 2:51 PM Ticket #7837 (Pick Blobs: 'PickedModel' object has no attribute 'triangle_number') closed by
- fixed: Fix: …
- 12:11 PM Ticket #7836 (Opening new session in old version) closed by
- duplicate
- 10:45 AM Ticket #7829 (Crash when Rapid Access shown) closed by
- duplicate
- 8:20 AM Ticket #7730 (Buried Volume: KeyError: 'Ni') closed by
- fixed
- 8:19 AM Ticket #7822 (SEQCROW: memory reporting: unsupported operand type(s) for *: ...) closed by
- fixed
- 8:19 AM Ticket #7814 (SEQCROW: substitute: list.remove(x): x not in list) closed by
- fixed
- 7:44 AM Ticket #7837 (Pick Blobs: 'PickedModel' object has no attribute 'triangle_number') created by
- […]
- 12:48 AM Ticket #7836 (Opening new session in old version) created by
- […]
Oct 19, 2022:
- 6:23 PM Ticket #7835 (marker fromMesh does not make mesh if there is no edge masking) closed by
- fixed: Fixed in 1.5. Code was simply ignoring all edges if the edge mask was …
- 6:21 PM Ticket #7835 (marker fromMesh does not make mesh if there is no edge masking) created by
- […]
- 6:04 PM Ticket #7834 (Python shell: 'QContextMenuEvent' object has no attribute 'globalPosition') created by
- […]
- 5:45 PM Ticket #7833 (problems w/ complex atomspec in "show" command) created by
- I was surprised that neither of these commands do anything: show (#2 …
- 5:42 PM Ticket #7832 (Show volume outline box in with red,green,blue edges for x,y,z axes) created by
- Begin forwarded message: From: Shayne Quinn via ChimeraX-users …
- 5:06 PM Dev2022-10-24 edited by
- (diff)
- 5:05 PM Dev2022-10-24 created by
- 5:05 PM DeveloperMeetings edited by
- (diff)
- 4:54 PM Ticket #7828 (Make map eraser sphere a Surface model so measure commands work on it) closed by
- fixed: Done. Made map eraser sphere a Surface model. Also made measure …
- 4:51 PM Ticket #7831 (Make measure center command work on surfaces) closed by
- fixed: Done.
- 4:51 PM Ticket #7831 (Make measure center command work on surfaces) created by
- Have measure center report the area weighted center of surfaces. …
- 4:12 PM Ticket #7830 (Can't install ChimeraX 1.5 on Ubuntu 22) created by
- Issue reported on ChimeraX GitHub …
- 2:26 PM Ticket #7829 (Crash when Rapid Access shown) created by
- […]
- 1:49 PM Ticket #7828 (Make map eraser sphere a Surface model so measure commands work on it) created by
- […]
- 1:42 PM Ticket #7823 (Crossfade: images do not match) closed by
- can't reproduce: One error I see in your ChimeraX Log is […] This is because you …
- 1:21 PM Ticket #7827 (Hydrogen added to C terminus) created by
- In 1e6j, a hydrogen gets added to the C terminus of chain L
- 1:16 PM Ticket #7826 (Charge addition problem for FRD) created by
- Charge addition for FRD in 2AOJ gets 119 electrons whereas in Chimera …
- 12:59 PM Ticket #7825 (Make getcrd give a warning or error if no atoms are specified.) created by
- […]
- 12:07 PM 2022-10-13 edited by
- (diff)
- 12:00 PM 2022-10-13 edited by
- (diff)
- 12:00 PM 2022-10-20 created by
- 11:59 AM 2022-10-13 edited by
- (diff)
- 11:55 AM DeveloperMeetings edited by
- (diff)
- 11:38 AM Ticket #7824 (Toolshed install of wiggle wheel file error installing dependencies) created by
- […] wiggle-0.2.2-py3-none-any.whl
- 10:43 AM Ticket #7820 (Unintelligible web service error message) closed by
- duplicate
- 10:41 AM Ticket #7819 (Crash in registration dialog after opening dozens of 2400 nucleotide ...) closed by
- can't reproduce
- 10:05 AM Ticket #7818 (Crash using File→Open on Windows and/or in return statement and/or ...) closed by
- can't reproduce
- 9:50 AM Ticket #7461 (Blast Results dialog: add buttons for same actions as in context menu) closed by
- fixed: Will be changed in tomorrow's build
- 9:46 AM Ticket #7816 (Crash creating QWebEngineProfile at startup) closed by
- duplicate
- 9:44 AM Ticket #7815 (Embedding Unicode characters) closed by
- not a bug: Hi Tianjun, That's not how Unicode characters are specified in …
- 8:58 AM Ticket #7776 (Toolshed install fails on umap-learn PyPi dependency) closed by
- fixed: Thanks to Greg finding a bug in the Python option parsing and fixing …
- 8:21 AM Ticket #7823 (Crossfade: images do not match) created by
- […]
- 8:07 AM Ticket #7822 (SEQCROW: memory reporting: unsupported operand type(s) for *: ...) created by
- […]
- 3:47 AM Ticket #7821 (Crash showing Rapid access at startup) created by
- […]
Oct 18, 2022:
- 10:53 PM Ticket #7820 (Unintelligible web service error message) created by
- […]
- 3:30 PM Ticket #7819 (Crash in registration dialog after opening dozens of 2400 nucleotide ...) created by
- […]
- 8:52 AM Ticket #7818 (Crash using File→Open on Windows and/or in return statement and/or ...) created by
- […]
- 7:55 AM Ticket #7817 (ArtiaX: open RELION: invalid literal for int() with base 10: 'stack') created by
- […]
- 6:40 AM Ticket #7816 (Crash creating QWebEngineProfile at startup) created by
- […]
- 4:28 AM Ticket #7806 (Deprecation warnings) closed by
- fixed: I *think* I've gotten all of mine now (numpy.bool, numpy.int and …
Oct 17, 2022:
- 9:14 PM Ticket #7815 (Embedding Unicode characters) created by
- […]
- 7:31 PM Ticket #7461 (Blast Results dialog: add buttons for same actions as in context menu) reopened by
- It's mostly done, but there are minor text fixes suggested in the last …
- 7:07 PM Ticket #7814 (SEQCROW: substitute: list.remove(x): x not in list) created by
- […]
- 5:13 PM Ticket #7811 (Make initial color of molecular surfaces match ribbons) closed by
- fixed: Done. In 1.6, not in 1.5. Made the initial molecular surface color …
- 5:11 PM Dev2022-10-17 edited by
- (diff)
- 4:50 PM Ticket #7812 (Make Mole file reader gives spheres unique residue numbers) closed by
- fixed: Fixed in 1.5. Code was making a fake Structure, Residue and Atoms. …
- 4:47 PM Ticket #7813 (Complain when multiple default openers exist for a suffix) created by
- Multiple default openers results in an arbitrary opener being used. …
- 4:44 PM Ticket #7812 (Make Mole file reader gives spheres unique residue numbers) created by
- […]
- 3:49 PM Dev2022-10-10 edited by
- (diff)
- 3:49 PM Dev2022-10-17 edited by
- (diff)
- 3:28 PM Dev2022-10-17 created by
- 3:26 PM DeveloperMeetings edited by
- (diff)
- 2:25 PM Ticket #7811 (Make initial color of molecular surfaces match ribbons) created by
- Currently the initial color of molecular surfaces uses color by chain …
- 2:15 PM Ticket #7810 (UNK residues that should not be UNK) created by
- […]
- 2:12 PM Ticket #7807 (Add a color surfaces "fromribbons" option) closed by
- fixed: Done. I added a color "fromribbons" option that only colors surfaces …
- 12:49 PM Ticket #7809 (Basic Actions session save: 'QEventLoop' object has no attribute 'exec_') closed by
- duplicate
- 12:49 PM Ticket #7808 (Basic Actions session save: 'QEventLoop' object has no attribute 'exec_') closed by
- duplicate
- 12:42 PM Ticket #7809 (Basic Actions session save: 'QEventLoop' object has no attribute 'exec_') created by
- […]
- 12:36 PM Ticket #7808 (Basic Actions session save: 'QEventLoop' object has no attribute 'exec_') created by
- […]
- 11:59 AM Ticket #7807 (Add a color surfaces "fromribbons" option) created by
- Want to color a molecular surface to match the ribbon color. There is …
- 11:02 AM Ticket #7806 (Deprecation warnings) created by
- […]
- 10:53 AM Ticket #7805 (Unintelligible web service error message) closed by
- duplicate
- 10:49 AM Ticket #7804 (New pseudobond not shown) closed by
- fixed: Hi Tony, Thanks for reporting this. It got fixed back on September …
- 10:40 AM Ticket #7802 (Crash in event loop) closed by
- can't reproduce
- 10:28 AM Ticket #7800 (Tool instance→windows map out of date) closed by
- can't reproduce
- 9:43 AM Ticket #7799 (Restore new session in old version) closed by
- not a bug
- 9:39 AM Ticket #7798 (Basic Actions session save: 'QEventLoop' object has no attribute 'exec_') closed by
- duplicate
- 6:53 AM Ticket #7805 (Unintelligible web service error message) created by
- […]
Oct 16, 2022:
- 9:54 PM Ticket #7804 (New pseudobond not shown) created by
- […]
- 1:14 PM Ticket #7803 (Install ISOLDE into ChimeraX 1.5) created by
- […]
- 10:22 AM Ticket #7802 (Crash in event loop) created by
- […]
- 4:41 AM Ticket #7801 (Out of memory opening 7f1q) created by
- […]
Oct 15, 2022:
- 8:12 AM Ticket #7800 (Tool instance→windows map out of date) created by
- […]
- 4:17 AM Ticket #7799 (Restore new session in old version) created by
- […]
- 1:55 AM Ticket #7798 (Basic Actions session save: 'QEventLoop' object has no attribute 'exec_') created by
- […]
Oct 14, 2022:
- 3:59 PM ChangeLog edited by
- (diff)
- 2:09 PM ChangeLog edited by
- (diff)
- 1:40 PM ChangeLog edited by
- (diff)
- 1:19 PM Ticket #7797 ('Sequence' object has no attribute '_changes_cb') closed by
- fixed: Hi Carter, Thanks for reporting this problem. I have committed a fix …
- 12:16 PM Ticket #7760 (ChimeraX build error caused by ChimeraX user site-packages setuptools ...) closed by
- fixed
- 12:10 PM Ticket #7797 ('Sequence' object has no attribute '_changes_cb') created by
- […]
- 11:34 AM Ticket #7794 (Graphics crash, macOS 11.6, Intel Iris Plus Graphics 640) closed by
- nonchimerax: Apple Intel graphics driver crash.
- 11:26 AM Ticket #7790 (glClear: invalid operation) closed by
- nonchimerax: This is almost surely a graphics driver problem. I see you are using …
- 9:44 AM Ticket #7795 (Basic Actions session save: 'QEventLoop' object has no attribute 'exec_') closed by
- duplicate: Hi, Thanks for reporting this problem. It has been fixed and the fix …
- 9:38 AM Ticket #7793 (Crash in event loop) closed by
- can't reproduce
- 9:36 AM Ticket #7792 (Crash in QMainWindow::removeDockWidget) closed by
- can't reproduce
- 8:10 AM Ticket #7796 (Crash showing Rapid Access at startup) created by
- […]
- 7:37 AM Ticket #7795 (Basic Actions session save: 'QEventLoop' object has no attribute 'exec_') created by
- […]
Oct 13, 2022:
- 11:33 PM Ticket #7794 (Graphics crash, macOS 11.6, Intel Iris Plus Graphics 640) created by
- […]
- 9:59 PM Ticket #7793 (Crash in event loop) created by
- […]
- 9:27 PM Ticket #7792 (Crash in QMainWindow::removeDockWidget) created by
- […]
- 7:06 PM Ticket #7791 (mlp surfaces option uses wrong atoms) closed by
- fixed: Fixed in 1.5 and daily builds. Made mlp command use the specified …
- 6:52 PM Ticket #7791 (mlp surfaces option uses wrong atoms) created by
- […]
- 3:39 PM Ticket #7790 (glClear: invalid operation) created by
- […]
- 2:39 PM Ticket #7787 (ChimeraX not starting up in Desktop folder on Windows) closed by
- fixed: Fixed in ChimeraX 1.5 and daily builds. Made it start on Desktop. I …
- 2:10 PM Ticket #7789 (UniProt fetch: HTTP Error 405: Not Allowed) closed by
- duplicate: Hi Charles, UniProt changed the API to their website since the …
- 2:08 PM Ticket #7788 (Crash in fork()) closed by
- limitation: Hi Juan, Thanks for reporting this problem. It seems to be an issue …
- 2:03 PM NIAID2022 edited by
- (diff)
- 1:54 PM Ticket #7786 (Crash in event loop) closed by
- can't reproduce
- 1:36 PM NIAID2022 edited by
- (diff)
- 12:58 PM Ticket #7785 (Crash destroying window) closed by
- can't reproduce: My best guess is that the red close button is getting pressed after …
- 12:40 PM Ticket #7789 (UniProt fetch: HTTP Error 405: Not Allowed) created by
- […] MILLION_DOLLAR_MOLECULE.pdb
- 11:01 AM Ticket #7788 (Crash in fork()) created by
- […]
- 6:55 AM Ticket #7787 (ChimeraX not starting up in Desktop folder on Windows) created by
- […]
Oct 12, 2022:
- 10:35 PM Ticket #7786 (Crash in event loop) created by
- […]
- 7:06 PM Ticket #7779 (Session save/restore vseries slider) closed by
- worksforme: The volume series slider is already restored in ChimeraX 1.4.
- 6:55 PM Ticket #7785 (Crash destroying window) created by
- […]
- 6:45 PM Ticket #7778 (Session save/restore mseries slider) closed by
- fixed: Done. In ChimeraX 1.6, not in 1.5. Model series slider now saved in …
- 6:01 PM Ticket #7575 (Coordset slider save/restore in session) closed by
- fixed: Done. Coordinate set sliders are now saved in sessions.
- 5:32 PM Ticket #6646 (RFE: show modality of DICOM (medical imaging) data) closed by
- fixed: I think it's a safe assumption that the body part is the same for all …
- 5:12 PM Ticket #1364 (Coordset slider gui should sync with coordset command) closed by
- fixed: Fixed. Not sure when this was fixed, probably eons ago.
- 3:17 PM Ticket #7783 (Crash in event loop after "interfaces" command) closed by
- can't reproduce: Probably Qt or PyQt bug.
- 3:14 PM Ticket #7782 (Crash in event loop in QtWebEngineCore) closed by
- can't reproduce: Was in event loop and crashed in QtWebEngineCore. Probably Qt or PyQt bug.
- 3:12 PM Ticket #7780 (Error in glClearColor) closed by
- can't reproduce: Probably graphics driver problem. Old ChimeraX 1.1.
- 3:05 PM 2022-10-13 edited by
- (diff)
- 3:03 PM Ticket #7500 (Make matchmaker command use nucleic matrix by default for RNA/DNA) closed by
- fixed: Change in daily build, not 1.5 branch.
- 1:16 PM Ticket #7659 (Don't block to check for updates) closed by
- fixed: Fix by not turning on a synchronous check when there is no available …
- 12:13 PM Ticket #7784 (Windows nogui output: underlying buffer has been detached) closed by
- can't reproduce: Was able to install SEQROW in a fresh ChimeraX 1.4.
- 11:02 AM Ticket #7777 (tile resets lighting) closed by
- not a bug: That is intentional. The tile command sets the rotation mouse mode to …
- 9:49 AM Ticket #7784 (Windows nogui output: underlying buffer has been detached) created by
- […]
- 9:22 AM Ticket #7781 (Session reset: 'Tasks' object has no attribute 'remove') closed by
- duplicate: Duplicate of #7602
- 9:15 AM Ticket #7783 (Crash in event loop after "interfaces" command) created by
- […]
- 6:53 AM Ticket #7782 (Crash in event loop in QtWebEngineCore) created by
- […]
- 4:07 AM Ticket #7781 (Session reset: 'Tasks' object has no attribute 'remove') created by
- […]
- 1:07 AM Ticket #7780 (Error in glClearColor) created by
- […]
Oct 11, 2022:
- 8:08 PM Ticket #7633 (Should we drop macOS 10.14 for the ChimeraX 1.5 release?) closed by
- fixed: Decided we should keep support for macOS 10.14 for the ChimeraX 1.5 …
- 5:49 PM Ticket #7779 (Session save/restore vseries slider) created by
- The vseries slider should restore from a session if it was present …
- 5:48 PM Ticket #7778 (Session save/restore mseries slider) created by
- The mseries slider should restore from a session if it was present …
- 3:21 PM Ticket #7777 (tile resets lighting) created by
- […]
- 2:13 PM Ticket #7776 (Toolshed install fails on umap-learn PyPi dependency) created by
- […] wiggle-0.2.2-py3-none-any.whl
- 10:57 AM Ticket #7774 (Error starting VR) closed by
- nonchimerax: PyOpenVR error on initialization 1002, probably “Oculus Link Not …
- 10:36 AM Ticket #7772 ("close session" with multiple models rotating: Cannot multiply Place ...) closed by
- fixed: Fixed. Closing a model when that model was being rotated with a …
- 10:24 AM 2022-10-13 created by
- 10:22 AM DeveloperMeetings edited by
- (diff)
- 10:04 AM Ticket #7775 (Crash showing Rapid Access) closed by
- can't reproduce
- 10:02 AM Ticket #7773 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.4, pre-Python upgrade
- 9:14 AM Ticket #7775 (Crash showing Rapid Access) created by
- […]
- 6:46 AM Ticket #7774 (Error starting VR) created by
- […]
- 3:56 AM Ticket #7773 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Oct 10, 2022:
- 5:02 PM Dev2022-10-10 edited by
- (diff)
- 5:00 PM Ticket #7765 (Match-map key is plain Sequence) closed by
- can't reproduce: Hi Yesenia, Thanks for reporting this problem. I'm not sure how to …
- 2:59 PM Dev2022-10-10 created by
- 2:59 PM DeveloperMeetings edited by
- (diff)
- 2:39 PM Ticket #7772 ("close session" with multiple models rotating: Cannot multiply Place ...) created by
- […]
- 2:34 PM Ticket #7771 (View command ignores volume planes) closed by
- fixed: Fixed. The object bounds was returning None for a volume image model …
- 2:09 PM Ticket #7764 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: Hi Alessandro, Thanks for reporting this problem. It is fixed in the …
- 2:04 PM Ticket #7761 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: pre-Python upgrade
- 2:01 PM Ticket #7770 (Add "replace" option to alphafold contacts command) closed by
- fixed: Done. I added two options "replace" (default true) and "name" …
- 1:50 PM Ticket #7771 (View command ignores volume planes) created by
- […]
- 11:46 AM Ticket #7770 (Add "replace" option to alphafold contacts command) created by
- […]
- 11:09 AM Ticket #7715 (DICOM: TypeError: %d format: a number is required, not NoneType) closed by
- fixed: OK, …
- 11:09 AM Ticket #7752 (DICOM Browser created Tools / Volume data menu, should be Tools / ...) closed by
- fixed: Fixed as of …
- 9:51 AM Ticket #7769 (Crash reading mmCIF) created by
- […]
- 9:15 AM Ticket #7768 (_openmm.new_Context: bad allocation) created by
- […]
Oct 9, 2022:
Oct 8, 2022:
- 10:52 PM Ticket #7766 (OpenMMException: Error initializing context: clCreateCommandQueue) created by
- […]
- 7:03 AM Ticket #7765 (Match-map key is plain Sequence) created by
- […]
- 5:37 AM Ticket #7764 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Oct 7, 2022:
- 10:03 PM Ticket #7759 (CollabFold: module 'jax' has no attribute 'tree_multimap') closed by
- fixed: Fixed. No need to update ChimeraX because fix is in server script so …
- 9:32 PM Ticket #7763 (Missing log messages in second AlphaFold prediction) created by
- […]
- 9:27 PM Ticket #7762 (Pin versions of all ColabFold dependencies so AlphaFold prediction ...) created by
- Currently ColabFold does not specify exact versions for most of its …
- 4:52 PM Ticket #7761 (Crash using File→Open on Windows and/or in return statement) created by
- […]
- 3:49 PM Ticket #7760 (ChimeraX build error caused by ChimeraX user site-packages setuptools ...) created by
- A ChimeraX build-from-scratch (with build directory deleted) failed …
- 1:02 PM Ticket #7759 (CollabFold: module 'jax' has no attribute 'tree_multimap') created by
- […]
- 11:12 AM Ticket #7758 (Crash during application exit) closed by
- nonchimerax: Qt or PyQt clean-up problem. It is a know problem that PyQt does not …
- 10:45 AM Ticket #7751 (Segger session save: invalid literal for int) closed by
- duplicate: The session failed to save because a non-integer values was typed into …
- 9:51 AM Ticket #7757 (Crash when asking to register) closed by
- can't reproduce
- 9:08 AM Ticket #7754 (Seeming infinite recursion drawing seq canvas) closed by
- can't reproduce
- 4:50 AM Ticket #7758 (Crash during application exit) created by
- […]
- 4:45 AM Ticket #7757 (Crash when asking to register) created by
- […]
- 3:51 AM Ticket #7756 (Stopping simulation: 'NoneType' object has no attribute 'atoms') created by
- […]
- 3:07 AM Ticket #7755 (Floating window behavior) created by
- […]
- 1:05 AM Ticket #7754 (Seeming infinite recursion drawing seq canvas) created by
- […]
Oct 6, 2022:
- 7:26 PM 2022-10-6 edited by
- (diff)
- 7:17 PM Ticket #7753 (Allow saving CCP4 maps with integer origin) closed by
- fixed: Done. Can save maps as .map or .ccp4 file in CCP4 format that uses …
- 7:15 PM Ticket #7753 (Allow saving CCP4 maps with integer origin) created by
- Jaime Fraser wanted to open two CCP4 x-ray maps, align the first to …
- 6:42 PM Ticket #7752 (DICOM Browser created Tools / Volume data menu, should be Tools / ...) created by
- […]
- 5:12 PM Ticket #7750 (Tug: All atoms within a residue must be contiguous) closed by
- not a bug: The error message says "All atoms within a residue must be …
- 4:56 PM Ticket #7749 (Various movie problems) closed by
- not a bug: This error is because you are running the "movie duplicate" command …
- 12:39 PM Ticket #5585 (Problem opening file hyperlinked in Excel in ChimeraX) closed by
- can't reproduce
- 12:30 PM Ticket #7751 (Segger session save: invalid literal for int) created by
- […]
- 10:59 AM 2022-10-6 edited by
- (diff)
- 10:50 AM Ticket #7747 (wrapped C/C++ object of type ChainMenuButton has been deleted) closed by
- duplicate
- 10:48 AM Ticket #7746 (wrapped C/C++ object of type ChainMenuButton has been deleted) closed by
- duplicate
- 9:18 AM Ticket #7750 (Tug: All atoms within a residue must be contiguous) created by
- […]
- 5:04 AM Ticket #7749 (Various movie problems) created by
- […]
- 12:08 AM Ticket #7748 (Cloud documentation) created by
- We might consider hosting documentation on GitHub Pages or ReadTheDocs …
Oct 5, 2022:
- 11:42 PM 2022-10-6 edited by
- (diff)
- 11:22 PM Ticket #7747 (wrapped C/C++ object of type ChainMenuButton has been deleted) created by
- […]
- 11:20 PM Ticket #7746 (wrapped C/C++ object of type ChainMenuButton has been deleted) created by
- […]
- 6:21 PM Ticket #7745 ("make clean": too many args) closed by
- fixed: I don't think that would have worked either, because calling `make …
- 5:17 PM Ticket #7745 ("make clean": too many args) created by
- Basically any bundle, but addh for example: …
- 2:53 PM Ticket #7727 (AlphaFold database settings should not update at startup) closed by
- not a bug: It is not great to have ISOLDE doing stuff every time ChimeraX starts …
- 2:06 PM Ticket #7742 (Crash in event loop after volume command) closed by
- can't reproduce: Could be a graphics driver crash. Intel graphics. Large 1024 x 1024 …
- 1:11 PM Ticket #7744 (Maestro pose viewer file: KeyError: 'i_m_residue_number') created by
- […]
- 12:55 PM Ticket #7743 (KeyError in floating-tool dict after de-iconfiy) created by
- […]
- 11:36 AM Ticket #7742 (Crash in event loop after volume command) created by
- […]
- 11:34 AM Ticket #7735 (Spin movie: No usable temporary directory found) closed by
- nonchimerax: No disk space. We have probably 10 of these reports over the last few …
- 11:22 AM Ticket #7726 (Crash in glDrawElementsInstanced) closed by
- nonchimerax: The Apple Intel graphics driver crashed. Unfortunately Apple's Intel …
- 11:05 AM Ticket #7741 (Crash in event loop) closed by
- can't reproduce
- 11:04 AM Ticket #7740 (Crash in event loop after session opened) closed by
- can't reproduce
- 10:50 AM Ticket #7738 (Crash in event loop) closed by
- can't reproduce
- 10:49 AM Ticket #7737 (Crash in QMainWindow::removeDockWidget) closed by
- can't reproduce: No log or Python-side traceback.
- 10:46 AM Ticket #7736 (Spin movie: No usable temporary directory found) closed by
- duplicate
- 10:41 AM Ticket #7734 (QMainWindowLayout::tabPosition called with out-of-bounds value '0') closed by
- duplicate
- 10:41 AM Ticket #7733 (QMainWindowLayout::tabPosition called with out-of-bounds value '0') closed by
- duplicate
- 10:40 AM Ticket #7732 (QMainWindowLayout::tabPosition called with out-of-bounds value '0') closed by
- duplicate: Tried again, this time on a Windows machine (snow). Still no dice.
- 10:21 AM Ticket #7731 (QMainWindowLayout::tabPosition called with out-of-bounds value '0') closed by
- can't reproduce: Tried to reproduce by have Basic Actions autostart in 1.3 and closing …
- 9:20 AM Ticket #7741 (Crash in event loop) created by
- […]
- 8:52 AM Ticket #7740 (Crash in event loop after session opened) created by
- […]
- 7:15 AM Ticket #7739 (QPainter::begin: Paint device returned engine == 0, type: 2) created by
- […]
- 6:49 AM Ticket #7738 (Crash in event loop) created by
- […]
- 6:49 AM Ticket #7737 (Crash in QMainWindow::removeDockWidget) created by
- […]
- 5:09 AM Ticket #7736 (Spin movie: No usable temporary directory found) created by
- […]
- 5:09 AM Ticket #7735 (Spin movie: No usable temporary directory found) created by
- […]
- 5:07 AM Ticket #7734 (QMainWindowLayout::tabPosition called with out-of-bounds value '0') created by
- […]
- 5:07 AM Ticket #7733 (QMainWindowLayout::tabPosition called with out-of-bounds value '0') created by
- […]
- 5:04 AM Ticket #7732 (QMainWindowLayout::tabPosition called with out-of-bounds value '0') created by
- […]
- 5:04 AM Ticket #7731 (QMainWindowLayout::tabPosition called with out-of-bounds value '0') created by
- […]
Oct 4, 2022:
- 7:31 PM Ticket #7730 (Buried Volume: KeyError: 'Ni') created by
- […]
- 7:10 PM Ticket #7461 (Blast Results dialog: add buttons for same actions as in context menu) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/0088eb25500e7ff50dd56d6f426ae8 …
- 7:08 PM Ticket #7708 (RFE: Normalize the git repository) closed by
- fixed: Added .gitattributes
- 6:17 PM Ticket #7719 ('-o' is not a legal uname option on Mac) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/3e332740254fe9ace1b007c576bd88 …
- 5:40 PM Ticket #7729 (SyntaxError on startup in core/decorators.py) closed by
- fixed: [https://github.com/RBVI/ChimeraX/commit/4ecd4174d311a144d07b0065db59cb …
- 5:31 PM Ticket #7729 (SyntaxError on startup in core/decorators.py) created by
- […]
- 3:54 PM Ticket #7728 (chimerax daily logs many errors in nogui mode) created by
- On plato, running chimerax --nogui, which is encapsulated in a CentOS …
- 12:10 PM Ticket #7727 (AlphaFold database settings should not update at startup) created by
- […]
- 12:03 PM Ticket #7726 (Crash in glDrawElementsInstanced) created by
- […]
- 11:13 AM Ticket #7463 (Additional phenix/douse enhancements) closed by
- fixed
- 10:53 AM Ticket #7724 (Crash in Qt event loop after setting volume contour level) closed by
- can't reproduce: Possibly a graphics driver crash.
- 10:49 AM Ticket #7722 (Maps in sessions with invalid cell angles) closed by
- nonchimerax: Hi Matt, MRC files have a header that says what the angles are …
- 10:32 AM Ticket #7723 (Crash in fork) closed by
- limitation: Hi Lori, The emulation that your Mac uses to run Intel binaries on …
- 10:28 AM Ticket #7725 (Update to AlphaFold database version 4) created by
- Begin forwarded message: From: Sameer Velankar via pdb-l …
- 10:21 AM Ticket #7724 (Crash in Qt event loop after setting volume contour level) created by
- […]
- 9:59 AM 2022-10-6 created by
- 9:58 AM DeveloperMeetings edited by
- (diff)
- 9:56 AM Ticket #7723 (Crash in fork) created by
- […]
- 9:41 AM Ticket #7721 (Session save: Basic Actions: 'QEventLoop' object has no attribute 'exec_') closed by
- duplicate: Hi David, Thanks for reporting this problem. It is fixed in the …
- 9:33 AM Ticket #7720 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 8:58 AM Ticket #7722 (Maps in sessions with invalid cell angles) created by
- […] PCR_average_Movie.cxs
- 6:49 AM Ticket #7721 (Session save: Basic Actions: 'QEventLoop' object has no attribute 'exec_') created by
- […]
- 1:57 AM Ticket #7720 (Crash using File→Open on Windows and/or in return statement) created by
- […]
Oct 3, 2022:
- 7:01 PM Dev2022-10-3 edited by
- (diff)
- 6:30 PM Ticket #5954 (Add Phenix douse tool to add waters) closed by
- fixed
- 6:09 PM Ticket #7689 (Crash closing tool) closed by
- can't reproduce: I changed some code that _may_ fix this problem, though I was never …
- 5:43 PM Ticket #7719 ('-o' is not a legal uname option on Mac) created by
- detectOS.make now has this line: SHORT_OS := $(shell uname -o) '-o' …
- 5:22 PM Ticket #7716 (All residues in MAE file erroneously non-standard) closed by
- fixed: Fixed. Maestro reader was including a trailing space in residue …
- 3:56 PM Ticket #4663 (Make native Apple M1 CPU distribution) closed by
- fixed: Tom was able to get an M1 build and a Universal build up as daily builds.
- 3:55 PM Ticket #6778 (Integrate arm64 macOS into ChimeraX's build/deployment system) closed by
- fixed: Tom was able to hook an M1 build into the build system.
- 3:11 PM Dev2022-10-3 edited by
- (diff)
- 3:03 PM Dev2022-10-3 edited by
- (diff)
- 2:47 PM Ticket #7718 (Document the Linux compiler used for ChimeraX releases and daily builds) created by
- Tristan Croll needs to know the compiler used to compile ChimeraX on …
- 2:25 PM Ticket #7717 (Global hide/show hitting dead tool) closed by
- can't reproduce
- 2:14 PM Dev2022-10-3 edited by
- (diff)
- 1:23 PM Ticket #7717 (Global hide/show hitting dead tool) created by
- […]
- 1:18 PM Ticket #7716 (All residues in MAE file erroneously non-standard) created by
- […] glide-dock_lps_xp_mod4_6.mae
- 12:35 PM Ticket #7715 (DICOM: TypeError: %d format: a number is required, not NoneType) created by
- […]
- 9:40 AM Ticket #7714 (Morph: 'set' object has no attribute 'items') closed by
- duplicate: Hi Feixia, This bug was fixed on Thursday, so get a new daily build …
- 9:33 AM Ticket #7713 ('SaveModelOptionWidget' object has no attribute '_name') closed by
- duplicate
- 9:32 AM Ticket #7712 (Crash in fork) closed by
- limitation
- 9:31 AM Ticket #7711 (Long atom spec crashes ChimeraX) closed by
- duplicate
- 9:30 AM Ticket #7710 (Long atom spec crashes ChimeraX) closed by
- duplicate: Duplicate of #4842
- 9:17 AM Ticket #7714 (Morph: 'set' object has no attribute 'items') created by
- […]
- 6:57 AM Ticket #7713 ('SaveModelOptionWidget' object has no attribute '_name') created by
- […]
Oct 2, 2022:
- 8:56 PM Ticket #7712 (Crash in fork) created by
- […]
- 7:04 PM Ticket #6926 (Problem fetching mmCIF template: URL can't contain control characters) closed by
- duplicate
- 6:56 PM Ticket #7017 (networkx: no libbz2) closed by
- fixed
Oct 1, 2022:
- 9:37 PM Ticket #7711 (Long atom spec crashes ChimeraX) created by
- […]
- 9:36 PM Ticket #7710 (Long atom spec crashes ChimeraX) created by
- […]
- 8:22 AM Ticket #7709 (Simulation stop: 'NoneType' object has no attribute 'atoms') created by
- […]
Sep 30, 2022:
- 4:48 PM Ticket #7708 (RFE: Normalize the git repository) created by
- I mentioned in the group meeting that I was investigating development …
- 3:38 PM Ticket #7705 (Web services not starting) closed by
- fixed: Great. Glad to hear that it works now.
- 3:16 PM 2022-9-29 edited by
- (diff)
- 1:39 PM Ticket #7707 (Make "wait" command with no arguments work with mseries command) created by
- […]
- 1:20 PM Ticket #7706 (Web services not starting) closed by
- duplicate
- 12:49 PM NIAID2022 edited by
- (diff)
- 12:00 PM Ticket #7706 (Web services not starting) created by
- […]
- 12:00 PM Ticket #7705 (Web services not starting) created by
- […]
- 11:37 AM Ticket #7704 (chain.from_seqres not set from PDB file) closed by
- fixed: Bug was side effect of PDB 2-character chain ID support -- the …
Sep 29, 2022:
- 10:59 PM Ticket #7704 (chain.from_seqres not set from PDB file) created by
- After "open 3fx2 format pdb", if you start the shell and do: […] …
- 7:12 PM 2022-9-29 edited by
- (diff)
- 4:07 PM Dev2022-10-3 created by
- 4:06 PM DeveloperMeetings edited by
- (diff)
- 4:05 PM DeveloperMeetings edited by
- (diff)
- 2:56 PM Ticket #7695 (Bug in matchmaker secondary structure code revamp) closed by
- fixed: Fix will be in tomorrow's daily build.
- 2:12 PM NIAID2022 edited by
- (diff)
- 2:09 PM NIAID2022 edited by
- (diff)
- 2:04 PM NIAID2022 edited by
- (diff)
- 1:59 PM NIAID2022 edited by
- (diff)
- 1:57 PM NIAID2022 edited by
- (diff)
- 1:35 PM NIAID2022 edited by
- (diff)
- 10:56 AM Ticket #7701 (glGetFramebufferAttachmentParameteriv: invalid enumerant') closed by
- nonchimerax: The is ChimeraX error is a graphics driver problem. The only way to …
- 10:52 AM Ticket #7703 (Bug in matchmaker secondary structure code revamp) closed by
- duplicate: Duplicate of #7695 -- adding Elaine to recipient list for that ticket.
- 10:49 AM Ticket #7702 (Unknown crash) closed by
- can't reproduce: Run directly from .dmg
- 10:49 AM Ticket #7697 (Crash during window resize in QOpenGLContext.makeCurrent()) closed by
- can't reproduce: Crashed making opengl context current. Could be a Qt bug, could be an …
- 10:45 AM Ticket #7700 (Unknown crash) closed by
- can't reproduce
- 10:44 AM Ticket #7699 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce
- 10:44 AM Ticket #7699 (Crash using File→Open dialog on Windows and/or returning from function) reopened by
- 10:43 AM Ticket #7699 (Crash using File→Open dialog on Windows and/or returning from function) closed by
- can't reproduce: 1.3
- 10:36 AM Ticket #7696 (Bug in matchmaker secondary structure code revamp) closed by
- duplicate
- 10:33 AM Ticket #7694 (Crash making connection callback) closed by
- can't reproduce: 1.1.1, so probably long fixed
- 10:29 AM Ticket #7692 (ChimeraX hangs at startup for minutes when Toolshed not responding) closed by
- duplicate: Duplicate of #7659. Updating recipient list for that ticket to …
- 10:19 AM Ticket #7703 (Bug in matchmaker secondary structure code revamp) created by
- […]
- 10:01 AM Ticket #7702 (Unknown crash) created by
- […]
- 9:44 AM Ticket #7701 (glGetFramebufferAttachmentParameteriv: invalid enumerant') created by
- […]
- 5:15 AM Ticket #7700 (Unknown crash) created by
- […]
- 2:41 AM Ticket #7699 (Crash using File→Open dialog on Windows and/or returning from function) created by
- […]
Sep 28, 2022:
- 11:50 PM Ticket #7698 (More compact VR Toolbar user interface) created by
- The ChimeraX toolbar is the most useful GUI in VR but is cumbersome to …
- 9:26 PM Ticket #7697 (Crash during window resize in QOpenGLContext.makeCurrent()) created by
- […]
- 8:26 PM Ticket #7696 (Bug in matchmaker secondary structure code revamp) created by
- […]
- 7:17 PM Ticket #7695 (Bug in matchmaker secondary structure code revamp) created by
- […] 5o2k.pdb
- 6:21 PM Ticket #7694 (Crash making connection callback) created by
- […]
- 6:16 PM Ticket #7693 (VR flickers with Quest 2 and AirLink or link cable) created by
- The Quest 2 headset exhibits jitter running ChimeraX with connection …
- 5:47 PM Ticket #7690 (Fetching maps from EMDB: ftp connection refused) closed by
- can't reproduce: Today EMDB fetch is working. The EMDB help desk also replied today …
- 5:41 PM Ticket #7692 (ChimeraX hangs at startup for minutes when Toolshed not responding) created by
- When plato was down for maintenance today I started a recent ChimeraX …
- 4:05 PM Ticket #7691 (Clipper closing possible already-closed model during session reset) created by
- […]
Sep 27, 2022:
- 4:35 PM Ticket #7690 (Fetching maps from EMDB: ftp connection refused) created by
- […]
- 3:55 PM Ticket #7683 (Water placement traceback when cannot find Phenix) closed by
- fixed: Made toolshed not rethrow ToolshedError if the originating error is a …
- 3:47 PM Ticket #7689 (Crash closing tool) created by
- […]
- 1:36 PM Ticket #7661 (Crash deleting atoms) closed by
- not a bug: Hi Loc, Thanks for sending the session. If you type "delete atoms" …
- 11:50 AM Ticket #7688 (Crash saving PNG) closed by
- duplicate: Same user has reported this same crash 5 times in past week. It has …
- 11:42 AM Ticket #7688 (Crash saving PNG) created by
- […]
- 11:19 AM Ticket #7687 (Unknown crash) closed by
- can't reproduce: Was running from .dmg
- 10:46 AM Ticket #7687 (Unknown crash) created by
- […]
- 10:21 AM Ticket #7686 (Crash in event loop) closed by
- can't reproduce
- 10:19 AM Ticket #7685 (Crash in atom-spec parser) closed by
- duplicate
- 10:17 AM Ticket #7684 (Crash using File→Open on Windows and/or in return statement) closed by
- can't reproduce: 1.3
- 10:14 AM Ticket #7681 (Crash getting previous crash info?) closed by
- can't reproduce: Guessing the crash reporter due to the Diagnostics::~Diagnostics() in …
- 10:10 AM Ticket #7680 (Crash in atom-spec parser) closed by
- duplicate: Probable duplicate of #4842
- 9:27 AM Ticket #7686 (Crash in event loop) created by
- […]
- 9:14 AM 2022-9-29 edited by
- (diff)
- 9:14 AM 2022-9-29 created by
- 9:12 AM DeveloperMeetings edited by
- (diff)
- 8:55 AM Ticket #7685 (Crash in atom-spec parser) created by
- […]
- 4:19 AM Ticket #7684 (Crash using File→Open on Windows and/or in return statement) created by
- […]
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