4v4u.cif hangs then fails

[kristen.browne@…]

This looks similar to the hangs that we were seeing with PDB QS:
27 October 2022,09:48:30           prefect.ShellTask            INFO     Using preset: Initial Styles / Original Look
27 October 2022,09:48:42           prefect.ShellTask            INFO     INFO:
27 October 2022,09:48:42           prefect.ShellTask            INFO     Preset implemented in Python; no expansion to individual ChimeraX commands available.
27 October 2022,11:26:50           prefect.ShellTask            INFO              /tmp/prefect-yq6ku7pa: line 1:    52 Killed                  /usr/bin/chimerax --offscreen --exit --script '/usr/local/lib/python3.9/site-packages/nih_3d_workflows/flows/chimerax_flow/chimera_x_scripts/cx_unified.py --outdir /tmp/nih3d_job_wv0sokow --voxel_size_file /tmp/nih3d_job_wv0sokow/voxel_size.json --pixel_spacing_file /tmp/nih3d_job_wv0sokow/pixel_spacing.json --molecule_size_file /tmp/nih3d_job_wv0sokow/molecule_size.json --pdb 4V4U'

Kristen Browne, MSc, MscBMC
Contractor - MSC, Inc. | A Guidehouse Company
3D Modeling and Biovisualization Specialist
Bioinformatics and Computational Biosciences Branch (BCBB)<https://www.niaid.nih.gov/research/bioinformatics-computational-biosciences-branch>
OCICB/OSMO/OD/NIAID/NIH

5601 Fishers Lane, Room 4A60
Rockville, MD 20852
Office 202-253-5228

logs (9).txt​

4v4u.cif​

[kristen.browne@…]

Added by email2trac

[kristen.browne@…]

Added by email2trac

[Eric Pettersen]

5 million atoms

[Eric Pettersen]

Due to the changes in #7901, operations on this structure now finish in a matter of minutes rather than hours.