Version conflict opening MTZ file in 1.5

[pierre.montaville@…]

The following bug report has been submitted:
Platform:        Windows-10-10.0.22621
ChimeraX Version: 1.5rc202210210730 (2022-10-21 07:30:10 UTC)
Description
When trying to open a mtz file, or executing 'open 7nxq structureFactor t' command, I have this error message from the log  : 
Traceback (most recent call last):   File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\cmd_line\tool.py", line 319, in execute     cmd.run(cmd_text)   File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run     result = ci.function(session, **kw_args)   File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\open_command\cmd.py", line 118, in cmd_open     models = Command(session, registry=registry).run(provider_cmd_text, log=log)[0]   File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\core\commands\cli.py", line 2897, in run     result = ci.function(session, **kw_args)   File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\open_command\cmd.py", line 153, in provider_open     models, status = collated_open(session, database_name, ident,   File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\open_command\cmd.py", line 457, in collated_open     return remember_data_format()   File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\open_command\cmd.py", line 428, in remember_data_format     models, status = func(*func_args, **func_kw)   File "C:\Program Files\ChimeraX\bin\lib\site-packages\chimerax\mmcif\__init__.py", line 75, in fetch     return fetcher(session, ident, ignore_cache=ignore_cache, **kw)   File "src\mmcif.pyx", line 341, in chimerax.mmcif.mmcif.fetch_mmcif   File "C:\Users\Pierre\AppData\Local\UCSF\ChimeraX\1.5\site-packages\chimerax\clipper\__init__.py", line 32, in <module>     __version__ = _version()   File "C:\Users\Pierre\AppData\Local\UCSF\ChimeraX\1.5\site-packages\chimerax\clipper\__init__.py", line 30, in _version     return pkg_resources.require('ChimeraX-Clipper')[0].version   File "C:\Program Files\ChimeraX\bin\lib\site-packages\pkg_resources\__init__.py", line 909, in require     needed = self.resolve(parse_requirements(requirements))   File "C:\Program Files\ChimeraX\bin\lib\site-packages\pkg_resources\__init__.py", line 800, in resolve     raise VersionConflict(dist, req).with_context(dependent_req) pkg_resources.ContextualVersionConflict: (ChimeraX-AtomicLibrary 8.0.2 (c:\program files\chimerax\bin\lib\site-packages), Requirement.parse('ChimeraX-AtomicLibrary~=7.0'), {'ChimeraX-Clipper'}) pkg_resources.ContextualVersionConflict: (ChimeraX-AtomicLibrary 8.0.2 (c:\program files\chimerax\bin\lib\site-packages), Requirement.parse('ChimeraX-AtomicLibrary~=7.0'), {'ChimeraX-Clipper'}) File "C:\Program Files\ChimeraX\bin\lib\site-packages\pkg_resources\__init__.py", line 800, in resolve raise VersionConflict(dist, req).with_context(dependent_req) 

Log:
Startup Errors  
---  
error | Bundle 'ChimeraX-ISOLDE' custom initialization failed  
warning | Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 490, in get_module  
m = importlib.import_module(self.package_name)  
File "C:\Program Files\ChimeraX\bin\lib\importlib\\__init__.py", line 127, in
import_module  
return _bootstrap._gcd_import(name[level:], package, level)  
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import  
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load  
File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked  
File "<frozen importlib._bootstrap>", line 680, in _load_unlocked  
File "<frozen importlib._bootstrap_external>", line 850, in exec_module  
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed  
File "C:\Users\Pierre\AppData\Local\UCSF\ChimeraX\1.5\site-
packages\chimerax\isolde\\__init__.py", line 51, in <module>  
__version__ = _version()  
File "C:\Users\Pierre\AppData\Local\UCSF\ChimeraX\1.5\site-
packages\chimerax\isolde\\__init__.py", line 49, in _version  
return pkg_resources.require('ChimeraX-ISOLDE')[0].version  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\pkg_resources\\__init__.py", line 909, in require  
needed = self.resolve(parse_requirements(requirements))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\pkg_resources\\__init__.py", line 800, in resolve  
raise VersionConflict(dist, req).with_context(dependent_req)  
pkg_resources.ContextualVersionConflict: (ChimeraX-AtomicLibrary 8.0.2
(c:\program files\chimerax\bin\lib\site-packages),
Requirement.parse('ChimeraX-AtomicLibrary~=7.0'), {'ChimeraX-ISOLDE',
'ChimeraX-Clipper'})  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 364, in initialize  
api = self._get_api(session.logger)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 509, in _get_api  
m = self.get_module()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 492, in get_module  
raise ToolshedError("Error importing bundle %s's module: %s" % (self.name,
str(e)))  
chimerax.core.toolshed.ToolshedError: Error importing bundle ChimeraX-ISOLDE's
module: (ChimeraX-AtomicLibrary 8.0.2 (c:\program files\chimerax\bin\lib\site-
packages), Requirement.parse('ChimeraX-AtomicLibrary~=7.0'), {'ChimeraX-
ISOLDE', 'ChimeraX-Clipper'})  
  
UCSF ChimeraX version: 1.5rc202210210730 (2022-10-21)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open C:/Users/Pierre/Downloads/7nxq_phases.mtz

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 490, in get_module  
m = importlib.import_module(self.package_name)  
File "C:\Program Files\ChimeraX\bin\lib\importlib\\__init__.py", line 127, in
import_module  
return _bootstrap._gcd_import(name[level:], package, level)  
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import  
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load  
File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked  
File "<frozen importlib._bootstrap>", line 680, in _load_unlocked  
File "<frozen importlib._bootstrap_external>", line 850, in exec_module  
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed  
File "C:\Users\Pierre\AppData\Local\UCSF\ChimeraX\1.5\site-
packages\chimerax\clipper\\__init__.py", line 32, in <module>  
__version__ = _version()  
File "C:\Users\Pierre\AppData\Local\UCSF\ChimeraX\1.5\site-
packages\chimerax\clipper\\__init__.py", line 30, in _version  
return pkg_resources.require('ChimeraX-Clipper')[0].version  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\pkg_resources\\__init__.py", line 909, in require  
needed = self.resolve(parse_requirements(requirements))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\pkg_resources\\__init__.py", line 800, in resolve  
raise VersionConflict(dist, req).with_context(dependent_req)  
pkg_resources.ContextualVersionConflict: (ChimeraX-AtomicLibrary 8.0.2
(c:\program files\chimerax\bin\lib\site-packages),
Requirement.parse('ChimeraX-AtomicLibrary~=7.0'), {'ChimeraX-Clipper'})  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\dialog.py", line 162, in _qt_safe  
run(session, "open " + " ".join([FileNameArg.unparse(p) for p in paths]) + (""  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\run.py", line 38, in run  
results = command.run(text, log=log, return_json=return_json)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 81, in cmd_open  
provider_args = mgr.open_args(data_format)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\manager.py", line 213, in open_args  
opener_info = self.opener_info(data_format)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\manager.py", line 222, in opener_info  
return provider_info.bundle_info.run_provider(self.session,
provider_info.name, self)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 385, in run_provider  
api = self._get_api(session.logger)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 509, in _get_api  
m = self.get_module()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 492, in get_module  
raise ToolshedError("Error importing bundle %s's module: %s" % (self.name,
str(e)))  
chimerax.core.toolshed.ToolshedError: Error importing bundle ChimeraX-
Clipper's module: (ChimeraX-AtomicLibrary 8.0.2 (c:\program
files\chimerax\bin\lib\site-packages), Requirement.parse('ChimeraX-
AtomicLibrary~=7.0'), {'ChimeraX-Clipper'})  
  
chimerax.core.toolshed.ToolshedError: Error importing bundle ChimeraX-
Clipper's module: (ChimeraX-AtomicLibrary 8.0.2 (c:\program
files\chimerax\bin\lib\site-packages), Requirement.parse('ChimeraX-
AtomicLibrary~=7.0'), {'ChimeraX-Clipper'})  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 492, in get_module  
raise ToolshedError("Error importing bundle %s's module: %s" % (self.name,
str(e)))  
  
See log for complete Python traceback.  
  

> open C:\chimeraX\7nxq.pdb format pdb

7nxq.pdb title:  
Structure of the pentameric C-terminal domain of the capsid protein from
kaposi'S sarcoma-associated herpesvirus (KSHV) [more info...]  
  
Chain information for 7nxq.pdb #1  
---  
Chain | Description | UniProt  
A B C D E F G H I J | capsid vertex component 2 | Q76RI7_HHV8  
  
Non-standard residues in 7nxq.pdb #1  
---  
ACT — acetate ion  
  

> volume style mesh

No volumes specified  

> toolshed show

> ui tool show Updates

Errors may have occurred when running pip:  

pip standard error:  
\---  
  
[notice] A new release of pip available: 22.2.2 -> 22.3  
[notice] To update, run: C:\Program Files\ChimeraX\bin\ChimeraX.exe -m pip
install --upgrade pip  
\---  

pip standard output:  
\---  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Collecting ChimeraX-Clipper==0.18.0  
Using cached
https://cxtoolshed.rbvi.ucsf.edu/media/chimeraxclipper/releases/0.18.0/ChimeraX_Clipper-0.18.0-cp39-cp39-win_amd64.whl
(22.8 MB)  
Installing collected packages: ChimeraX-Clipper  
Attempting uninstall: ChimeraX-Clipper  
Found existing installation: ChimeraX-Clipper 0.18.0  
Uninstalling ChimeraX-Clipper-0.18.0:  
Successfully uninstalled ChimeraX-Clipper-0.18.0  
Successfully installed ChimeraX-Clipper-0.18.0  
\---  

Successfully installed ChimeraX-Clipper-0.18.0  
Installed ChimeraX-Clipper (0.18.0)  
Installed ChimeraX-ISOLDE (1.4)  
Replacing data format 'MTZ' as defined by ChimeraX-Clipper with definition
from ChimeraX-Clipper  

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 490, in get_module  
m = importlib.import_module(self.package_name)  
File "C:\Program Files\ChimeraX\bin\lib\importlib\\__init__.py", line 127, in
import_module  
return _bootstrap._gcd_import(name[level:], package, level)  
File "<frozen importlib._bootstrap>", line 1030, in _gcd_import  
File "<frozen importlib._bootstrap>", line 1007, in _find_and_load  
File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked  
File "<frozen importlib._bootstrap>", line 680, in _load_unlocked  
File "<frozen importlib._bootstrap_external>", line 850, in exec_module  
File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed  
File "C:\Users\Pierre\AppData\Local\UCSF\ChimeraX\1.5\site-
packages\chimerax\isolde\\__init__.py", line 51, in <module>  
__version__ = _version()  
File "C:\Users\Pierre\AppData\Local\UCSF\ChimeraX\1.5\site-
packages\chimerax\isolde\\__init__.py", line 49, in _version  
return pkg_resources.require('ChimeraX-ISOLDE')[0].version  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\pkg_resources\\__init__.py", line 909, in require  
needed = self.resolve(parse_requirements(requirements))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\pkg_resources\\__init__.py", line 800, in resolve  
raise VersionConflict(dist, req).with_context(dependent_req)  
pkg_resources.ContextualVersionConflict: (ChimeraX-AtomicLibrary 8.0.2
(c:\program files\chimerax\bin\lib\site-packages),
Requirement.parse('ChimeraX-AtomicLibrary~=7.0'), {'ChimeraX-ISOLDE',
'ChimeraX-Clipper'})  
  
During handling of the above exception, another exception occurred:  
  
Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 364, in initialize  
api = self._get_api(session.logger)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 509, in _get_api  
m = self.get_module()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\toolshed\info.py", line 492, in get_module  
raise ToolshedError("Error importing bundle %s's module: %s" % (self.name,
str(e)))  
chimerax.core.toolshed.ToolshedError: Error importing bundle ChimeraX-ISOLDE's
module: (ChimeraX-AtomicLibrary 8.0.2 (c:\program files\chimerax\bin\lib\site-
packages), Requirement.parse('ChimeraX-AtomicLibrary~=7.0'), {'ChimeraX-
ISOLDE', 'ChimeraX-Clipper'})  
  

ChimeraX-ISOLDE (installed) [version: 1.4] [api package: chimerax.isolde]
[category: General] [tool: ISOLDE [categories: General] [synopsis: Interactive
Molecular Dynamics Flexible Fitting (iMDFF)]] [tool: Ramachandran Plot
[categories: Validation] [synopsis: Interactive Ramachandran plot]] [command:
isolde [categories: General] [synopsis: Command-line control of ISOLDE
simulations]] [command: rama [categories: General] [synopsis: Live
Ramachandran validation of models]] [command: rota [categories: General]
[synopsis: Live rotamer validation of models]] [command: ~rama [categories:
General] [synopsis: Turn off live Ramachandran validation of models]]
[command: ~rota [categories: General] [synopsis: Turn off live rotamer
validation of models]]: custom initialization failed  

> open 7nxq structureFactors true

Traceback (most recent call last):  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\cmd_line\tool.py", line 319, in execute  
cmd.run(cmd_text)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 118, in cmd_open  
models = Command(session, registry=registry).run(provider_cmd_text,
log=log)[0]  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run  
result = ci.function(session, **kw_args)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 153, in provider_open  
models, status = collated_open(session, database_name, ident,  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 457, in collated_open  
return remember_data_format()  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\open_command\cmd.py", line 428, in remember_data_format  
models, status = func(*func_args, **func_kw)  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\chimerax\mmcif\\__init__.py", line 75, in fetch  
return fetcher(session, ident, ignore_cache=ignore_cache, **kw)  
File "src\mmcif.pyx", line 341, in chimerax.mmcif.mmcif.fetch_mmcif  
File "C:\Users\Pierre\AppData\Local\UCSF\ChimeraX\1.5\site-
packages\chimerax\clipper\\__init__.py", line 32, in <module>  
__version__ = _version()  
File "C:\Users\Pierre\AppData\Local\UCSF\ChimeraX\1.5\site-
packages\chimerax\clipper\\__init__.py", line 30, in _version  
return pkg_resources.require('ChimeraX-Clipper')[0].version  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\pkg_resources\\__init__.py", line 909, in require  
needed = self.resolve(parse_requirements(requirements))  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\pkg_resources\\__init__.py", line 800, in resolve  
raise VersionConflict(dist, req).with_context(dependent_req)  
pkg_resources.ContextualVersionConflict: (ChimeraX-AtomicLibrary 8.0.2
(c:\program files\chimerax\bin\lib\site-packages),
Requirement.parse('ChimeraX-AtomicLibrary~=7.0'), {'ChimeraX-Clipper'})  
  
pkg_resources.ContextualVersionConflict: (ChimeraX-AtomicLibrary 8.0.2
(c:\program files\chimerax\bin\lib\site-packages),
Requirement.parse('ChimeraX-AtomicLibrary~=7.0'), {'ChimeraX-Clipper'})  
  
File "C:\Program Files\ChimeraX\bin\lib\site-
packages\pkg_resources\\__init__.py", line 800, in resolve  
raise VersionConflict(dist, req).with_context(dependent_req)  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 512.59
OpenGL renderer: NVIDIA GeForce RTX 3050 Ti Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

Python: 3.9.11
Locale: fr_FR.cp1252
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: windows

Manufacturer: ASUSTeK COMPUTER INC.
Model: Vivobook_ASUSLaptop M7600QE_M7600QE
OS: Microsoft Windows 11 Famille (Build 22621)
Memory: 33,721,905,152
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 9 5900HX with Radeon Graphics        
OSLanguage: fr-FR

Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    asttokens: 2.0.8
    Babel: 2.10.3
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2022.9.24
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.1.3
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.6
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.41.4
    ChimeraX-AtomicLibrary: 8.0.2
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-Clipper: 0.18.0
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5rc202210210730
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ISOLDE: 1.4
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-Phenix: 0.3
    ChimeraX-PhenixUI: 1.0.5
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.2.1
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-XMAS: 1.1.2
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    comtypes: 1.1.10
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.3
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.1.1
    filelock: 3.7.1
    fonttools: 4.37.4
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.0.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 4.11.2
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.3
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    prompt-toolkit: 3.0.31
    psutil: 5.9.1
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.5
    pywin32: 303
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.2.1
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.5.1
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    urllib3: 1.26.12
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    WMI: 1.5.1
    zipp: 3.9.0

[Tristan Croll]

Sorry about this - due to my misunderstanding of the Python dependency version syntax, ISOLDE 1.4 and the corresponding Clipper version were erroneously specified as being compatible with all ChimeraX versions <2.0 rather than <1.5. I'm working on getting a new 1.5-compatible release out soon... bear with me!