Opened 3 years ago

Closed 3 years ago

#7797 closed defect (fixed)

'Sequence' object has no attribute '_changes_cb'

Reported by: carter.teal@… Owned by: pett
Priority: normal Milestone:
Component: Sequence Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.5.dev202210140204 (2022-10-14 02:04:31 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.5.dev202210140204 (2022-10-14)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/carterteal/Downloads/ChimeraX/AlphaFold/prediction_2/best_model.pdb
> format pdb

Chain information for best_model.pdb #1  
---  
Chain | Description  
B | No description available  
C | No description available  
  

> sequence chain #1/B

Alignment identifier is 1/B  

> ui tool show "Modeller Comparative"

> open https://www.rbvi.ucsf.edu/chimerax/tutorials.html

Opened https://www.rbvi.ucsf.edu/chimerax/tutorials.html  

> ui tool show "AlphaFold Error Plot"

> alphafold pae #1 file
> /Users/carterteal/Downloads/ChimeraX/AlphaFold/prediction_2/best_model_pae.json

> ui tool show AlphaFold

> ui tool show ViewDockX

No suitable models found for ViewDockX  

> ui tool show Distances

> alphafold contacts /A toResidues /B

No residues specified for alphafold contacts  

> alphafold contacts /C toResidues /B

> show atoms

[Repeated 1 time(s)]

> hide atoms

> coulombic

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for best_model.pdb_B SES surface #1.2: minimum, -12.22, mean
-0.06, maximum 10.09  
Coulombic values for best_model.pdb_C SES surface #1.3: minimum, -15.20, mean
-1.66, maximum 8.20  
To also show corresponding color key, enter the above coulombic command and
add key true  

> rainbow

> show cartoons

> hide atoms

> coulombic

Coulombic values for best_model.pdb_B SES surface #1.2: minimum, -12.22, mean
-0.06, maximum 10.09  
Coulombic values for best_model.pdb_C SES surface #1.3: minimum, -15.20, mean
-1.66, maximum 8.20  
To also show corresponding color key, enter the above coulombic command and
add key true  

> coulombic

Coulombic values for best_model.pdb_B SES surface #1.2: minimum, -12.22, mean
-0.06, maximum 10.09  
Coulombic values for best_model.pdb_C SES surface #1.3: minimum, -15.20, mean
-1.66, maximum 8.20  
To also show corresponding color key, enter the above coulombic command and
add key true  

> color bynucleotide

> nucleotides atoms

> style nucleic stick

Changed 0 atom styles  

> nucleotides tube/slab shape box

> show cartoons

> hide atoms

> hide surfaces

> color bynucleotide

> style sphere

Changed 984 atom styles  

> color bychain

> color bypolymer

> color bychain

> color byhetero

> hbonds reveal true

93 hydrogen bonds found  

> ~hbonds

Alignment identifier is 1/B  
Alignment identifier is 1/C  
Destroying pre-existing alignment with identifier 1/B  
Alignment identifier is 1/B  
Destroying pre-existing alignment with identifier 1/C  
Alignment identifier is 1/C  
Destroying pre-existing alignment with identifier 1/B  
Alignment identifier is 1/B  
Destroying pre-existing alignment with identifier 1/C  
Alignment identifier is 1/C  

> select /C:20-21

15 atoms, 15 bonds, 2 residues, 1 model selected  

> select /C:20-21

15 atoms, 15 bonds, 2 residues, 1 model selected  

> select /C:20

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select /C:17-20

26 atoms, 26 bonds, 4 residues, 1 model selected  

> show sel cartoons

> nucleotides sel tube/slab shape box

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel fill

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel fill

> style nucleic & sel stick

Changed 0 atom styles  

> style sel sphere

Changed 26 atom styles  

> style sel ball

Changed 26 atom styles  

> rainbow sel

[Repeated 1 time(s)]

> nucleotides sel fill

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel ladder

[Repeated 1 time(s)]

> nucleotides sel tube/slab shape box

[Repeated 1 time(s)]

> show sel atoms

[Repeated 1 time(s)]

> show sel cartoons

[Repeated 2 time(s)]

> hide sel atoms

> hide sel cartoons

[Repeated 3 time(s)]

> show sel cartoons

> style sel stick

Changed 26 atom styles  

> style sel stick

Changed 26 atom styles  

> style sel stick

Changed 26 atom styles  

> style sel ball

Changed 26 atom styles  

> style sel ball

Changed 26 atom styles  

> style sel ball

Changed 26 atom styles  

> hide sel surfaces

[Repeated 3 time(s)]

> ~hbonds

[Repeated 3 time(s)]

> interfaces select & ~solvent

Missing or invalid "atoms" argument: invalid atoms specifier  

> interfaces select & ~solvent

Missing or invalid "atoms" argument: invalid atoms specifier  

> interfaces select & ~solvent

Missing or invalid "atoms" argument: invalid atoms specifier  

> interfaces select & ~solvent

Missing or invalid "atoms" argument: invalid atoms specifier  

> mlp sel

Map values for surface "best_model.pdb_C SES surface": minimum -28.65, mean
-4.35, maximum 20.97  
To also show corresponding color key, enter the above mlp command and add key
true  

> color sel bypolymer

> coulombic sel

Coulombic values for best_model.pdb_C SES surface #1.3: minimum, -15.20, mean
-1.66, maximum 8.20  
To also show corresponding color key, enter the above coulombic command and
add key true  

> mlp sel

Map values for surface "best_model.pdb_C SES surface": minimum -28.65, mean
-4.35, maximum 20.97  
To also show corresponding color key, enter the above mlp command and add key
true  

> color bfactor sel

26 atoms, 4 residues, 1 surfaces, atom bfactor range 72.1 to 82.2  

> color bfactor sel

26 atoms, 4 residues, 1 surfaces, atom bfactor range 72.1 to 82.2  

> mlp sel

Map values for surface "best_model.pdb_C SES surface": minimum -28.65, mean
-4.35, maximum 20.97  
To also show corresponding color key, enter the above mlp command and add key
true  

> coulombic sel

Coulombic values for best_model.pdb_C SES surface #1.3: minimum, -15.20, mean
-1.66, maximum 8.20  
To also show corresponding color key, enter the above coulombic command and
add key true  

> color sel bynucleotide

[Repeated 1 time(s)]

> color sel byhetero

[Repeated 2 time(s)]

> show sel cartoons

[Repeated 1 time(s)]

> hide sel cartoons

[Repeated 4 time(s)]

> hide sel atoms

[Repeated 1 time(s)]

> style sel stick

Changed 26 atom styles  

> style sel stick

Changed 26 atom styles  

> style sel stick

Changed 26 atom styles  

> style sel sphere

Changed 26 atom styles  

> style sel sphere

Changed 26 atom styles  

> style sel sphere

Changed 26 atom styles  

> set bgColor white

> lighting simple

> lighting soft

> lighting full

> lighting soft

> style sel sphere

Changed 26 atom styles  

> style sel sphere

Changed 26 atom styles  

> style sel sphere

Changed 26 atom styles  

> style sel sphere

Changed 26 atom styles  

> style sel sphere

Changed 26 atom styles  

> style sel sphere

Changed 26 atom styles  

> style sel sphere

Changed 26 atom styles  

> style sel stick

Changed 26 atom styles  

> style sel stick

Changed 26 atom styles  

> style sel stick

Changed 26 atom styles  

> style sel ball

Changed 26 atom styles  

> nucleotides sel tube/slab shape box

> style sel stick

Changed 26 atom styles  

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel fill

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel fill

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel fill

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel fill

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel tube/slab shape box

[Repeated 3 time(s)]

> nucleotides sel ladder

[Repeated 4 time(s)]

> show sel surfaces

> hide sel surfaces

[Repeated 2 time(s)]

> show sel surfaces

> hide sel surfaces

> show sel cartoons

> hide sel cartoons

> show sel cartoons

> hide sel atoms

[Repeated 4 time(s)]

> close session

Traceback (most recent call last):  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
Error processing trigger "changes":  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
Error processing trigger "changes":  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
Error processing trigger "changes":  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
Error processing trigger "changes":  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
Error processing trigger "changes":  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
Error processing trigger "changes":  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
Error processing trigger "changes":  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
Error processing trigger "changes":  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
  
See log for complete Python traceback.  
  
Traceback (most recent call last):  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke  
return self._func(self._name, data)  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
Error processing trigger "changes":  
AttributeError: 'Sequence' object has no attribute '_changes_cb'  
  
File
"/private/var/folders/s0/fsyd878n46n8gwbj7lsqt4jr0000gn/T/AppTranslocation/27E36511-821A-4422-97C3-DFC4C509F5B2/d/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/atomic/molobject.py", line 1045, in proxy_handler  
s._changes_cb(*args)  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 INTEL-18.8.4
OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655
OpenGL vendor: Intel Inc.

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro15,2
      Processor Name: Quad-Core Intel Core i5
      Processor Speed: 2.3 GHz
      Number of Processors: 1
      Total Number of Cores: 4
      L2 Cache (per Core): 256 KB
      L3 Cache: 6 MB
      Hyper-Threading Technology: Enabled
      Memory: 8 GB
      System Firmware Version: 1731.140.2.0.0 (iBridge: 19.16.16066.0.0,0)
      OS Loader Version: 540.120.3~19

Software:

    System Software Overview:

      System Version: macOS 12.5.1 (21G83)
      Kernel Version: Darwin 21.6.0
      Time since boot: 25 days 4:55

Graphics/Displays:

    Intel Iris Plus Graphics 655:

      Chipset Model: Intel Iris Plus Graphics 655
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3ea5
      Revision ID: 0x0001
      Metal Family: Supported, Metal GPUFamily macOS 2
      Displays:
        ASUS VZ279:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: J4LMTJ004350
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Connection Type: DVI or HDMI
          Adapter Firmware Version: 0.00


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    asttokens: 2.0.8
    Babel: 2.10.3
    backcall: 0.2.0
    blockdiag: 3.0.0
    build: 0.8.0
    certifi: 2021.10.8
    cftime: 1.6.2
    charset-normalizer: 2.1.1
    ChimeraX-AddCharge: 1.4
    ChimeraX-AddH: 2.2
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.2
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.3
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.43.1
    ChimeraX-AtomicLibrary: 8.0.2
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.3
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.2
    ChimeraX-BondRot: 2.0.1
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.7.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.3.1
    ChimeraX-ChangeChains: 1.0.2
    ChimeraX-CheckWaters: 1.3
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.3
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.2
    ChimeraX-CommandLine: 1.2.4
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.5.dev202210140204
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.3
    ChimeraX-DockPrep: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.1
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-Label: 1.1.7
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.2
    ChimeraX-Map: 1.1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.1
    ChimeraX-MatchMaker: 2.0.9
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.2
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.8
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.6
    ChimeraX-ModelPanel: 1.3.6
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.1
    ChimeraX-MouseModes: 1.1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.9.1
    ChimeraX-PDB: 2.6.8
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.0
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.7.3
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.1
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.10
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.1.3
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.24.2
    ChimeraX-uniprot: 2.2.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.1.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.1
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.5
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.32
    debugpy: 1.6.3
    decorator: 5.1.1
    docutils: 0.19
    entrypoints: 0.4
    executing: 1.1.1
    filelock: 3.7.1
    fonttools: 4.37.4
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.4
    ihm: 0.33
    imagecodecs: 2022.7.31
    imagesize: 1.4.1
    importlib-metadata: 5.0.0
    ipykernel: 6.15.3
    ipython: 8.4.0
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.1.2
    jupyter-client: 7.3.4
    jupyter-core: 4.11.1
    kiwisolver: 1.4.4
    line-profiler: 3.5.1
    lxml: 4.9.1
    lz4: 4.0.2
    MarkupSafe: 2.1.1
    matplotlib: 3.5.2
    matplotlib-inline: 0.1.6
    msgpack: 1.0.4
    nest-asyncio: 1.5.6
    netCDF4: 1.6.0
    networkx: 2.8.5
    numexpr: 2.8.3
    numpy: 1.23.1
    openvr: 1.23.701
    packaging: 21.3
    ParmEd: 3.4.3
    parso: 0.8.3
    pep517: 0.13.0
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.2.0
    pip: 22.2.2
    pkginfo: 1.8.3
    prompt-toolkit: 3.0.31
    psutil: 5.9.1
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    pycollada: 0.7.2
    pydicom: 2.3.0
    Pygments: 2.12.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.1
    PyQt6-Qt6: 6.3.2
    PyQt6-sip: 13.4.0
    PyQt6-WebEngine-commercial: 6.3.1
    PyQt6-WebEngine-Qt6: 6.3.2
    python-dateutil: 2.8.2
    pytz: 2022.4
    pyzmq: 24.0.1
    qtconsole: 5.3.1
    QtPy: 2.2.1
    RandomWords: 0.4.0
    requests: 2.28.1
    scipy: 1.9.0
    setuptools: 65.1.1
    setuptools-scm: 7.0.5
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 5.1.1
    sphinx-autodoc-typehints: 1.19.1
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    stack-data: 0.5.1
    tables: 3.7.0
    tifffile: 2022.7.31
    tinyarray: 1.2.4
    tomli: 2.0.1
    tornado: 6.2
    traitlets: 5.3.0
    typing-extensions: 4.4.0
    urllib3: 1.26.12
    wcwidth: 0.2.5
    webcolors: 1.12
    wheel: 0.37.1
    wheel-filename: 1.4.1
    zipp: 3.9.0

Change History (2)

comment:1 by pett, 3 years ago

Cc: Tom Goddard added
Component: Unassigned → Sequence
Owner: set to pett
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → 'Sequence' object has no attribute '_changes_cb'

comment:2 by pett, 3 years ago

Resolution: → fixed
Status: accepted → closed

Hi Carter,

Thanks for reporting this problem. I have committed a fix and the fix will be in tomorrow's daily build.

--Eric

Eric Pettersen
UCSF Computer Graphics Lab

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