Opened 3 years ago

Closed 3 years ago

Last modified 3 years ago

#7819 closed defect (can't reproduce)

Crash in registration dialog after opening dozens of 2400 nucleotide structures

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Core Version:
Keywords: Cc: Greg Couch, Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Illegal instruction

Current thread 0x0000000202b17600 (most recent call first):
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/ask.py", line 67 in _ask_gui
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/ask.py", line 30 in ask
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/registration/nag.py", line 220 in _ask_to_register
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/registration/nag.py", line 214 in _delayed_ask
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 134 in invoke
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 217 in _activate
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 186 in activate
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/triggerset.py", line 354 in activate_trigger
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 54 in draw_new_frame
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/core/updateloop.py", line 139 in _redraw_timer_callback
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in 
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
  File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main


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{
  "uptime" : 69000,
  "procLaunch" : "2022-10-19 00:23:05.1909 +0200",
  "procRole" : "Background",
  "version" : 2,
  "userID" : 503,
  "deployVersion" : 210,
  "modelCode" : "MacBookPro18,3",
  "procStartAbsTime" : 1666388974268,
  "coalitionID" : 1785,
  "osVersion" : {
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    "build" : "21G83",
    "releaseType" : "User"
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  "captureTime" : "2022-10-19 00:24:19.2888 +0200",
  "incident" : "ED840749-E793-4250-8E61-F3EF0DD6E2E7",
  "bug_type" : "309",
  "pid" : 38162,
  "procExitAbsTime" : 1668167056736,
  "translated" : true,
  "cpuType" : "X86-64",
  "procName" : "ChimeraX",
  "procPath" : "\/Applications\/ChimeraX-1.4.app\/Contents\/MacOS\/ChimeraX",
  "bundleInfo" : {"CFBundleShortVersionString":"1.4.0","CFBundleVersion":"1.4.0.0","CFBundleIdentifier":"edu.ucsf.cgl.ChimeraX"},
  "storeInfo" : {"deviceIdentifierForVendor":"27FE96DF-D4A9-56D7-A6E5-DF0C60091B82","thirdParty":true},
  "parentProc" : "launchd",
  "parentPid" : 1,
  "coalitionName" : "edu.ucsf.cgl.ChimeraX",
  "crashReporterKey" : "6306DB86-CB16-5CDC-2098-CD66C7DB2439",
  "wakeTime" : 2984,
  "sleepWakeUUID" : "7CCC72B1-E1C4-4382-B280-29EC2B0E95AB",
  "sip" : "enabled",
  "isCorpse" : 1,
  "exception" : {"codes":"0x0000000000000001, 0x0000000000000000","rawCodes":[1,0],"type":"EXC_BAD_INSTRUCTION","signal":"SIGILL"},
  "ktriageinfo" : "VM - pmap_enter failed with resource shortage\nVM - pmap_enter failed with resource shortage\nVM - pmap_enter failed with resource shortage\nVM - pmap_enter failed with resource shortage\nVM - pmap_enter failed with resource shortage\n",
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  "faultingThread" : 0,
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    "path" : "\/Applications\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/PyQt6\/QtCore.abi3.so",
    "name" : "QtCore.abi3.so"
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    "path" : "\/Applications\/ChimeraX-1.4.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.9\/lib\/python3.9\/site-packages\/numpy\/.dylibs\/libopenblas64_.0.dylib",
    "name" : "libopenblas64_.0.dylib"
  },
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],
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}


Log:
UCSF ChimeraX version: 1.4 (2022-06-03)  
© 2016-2022 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/lmonari/Documents/RNA_origami/nanotubes/8H/-14_9_X/data_pattern_99_zip3/pattern_99_zip3_commands.cxc

> open pattern_99_zip3_15.pdb

Summary of feedback from opening pattern_99_zip3_15.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_15.pdb #1  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_30.pdb

Summary of feedback from opening pattern_99_zip3_30.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_30.pdb #2  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_45.pdb

Summary of feedback from opening pattern_99_zip3_45.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_45.pdb #3  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_60.pdb

Summary of feedback from opening pattern_99_zip3_60.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_60.pdb #4  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_75.pdb

Summary of feedback from opening pattern_99_zip3_75.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_75.pdb #5  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_90.pdb

Summary of feedback from opening pattern_99_zip3_90.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_90.pdb #6  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_105.pdb

Summary of feedback from opening pattern_99_zip3_105.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_105.pdb #7  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_120.pdb

Summary of feedback from opening pattern_99_zip3_120.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_120.pdb #8  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_135.pdb

Summary of feedback from opening pattern_99_zip3_135.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_135.pdb #9  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_150.pdb

Summary of feedback from opening pattern_99_zip3_150.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_150.pdb #10  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_165.pdb

Summary of feedback from opening pattern_99_zip3_165.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_165.pdb #11  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_180.pdb

Summary of feedback from opening pattern_99_zip3_180.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_180.pdb #12  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_195.pdb

Summary of feedback from opening pattern_99_zip3_195.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_195.pdb #13  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_210.pdb

Summary of feedback from opening pattern_99_zip3_210.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_210.pdb #14  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_225.pdb

Summary of feedback from opening pattern_99_zip3_225.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_225.pdb #15  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_240.pdb

Summary of feedback from opening pattern_99_zip3_240.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_240.pdb #16  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_255.pdb

Summary of feedback from opening pattern_99_zip3_255.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_255.pdb #17  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_270.pdb

Summary of feedback from opening pattern_99_zip3_270.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_270.pdb #18  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_285.pdb

Summary of feedback from opening pattern_99_zip3_285.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_285.pdb #19  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_300.pdb

Summary of feedback from opening pattern_99_zip3_300.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_300.pdb #20  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_315.pdb

Summary of feedback from opening pattern_99_zip3_315.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_315.pdb #21  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_330.pdb

Summary of feedback from opening pattern_99_zip3_330.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_330.pdb #22  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_345.pdb

Summary of feedback from opening pattern_99_zip3_345.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_345.pdb #23  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_360.pdb

Summary of feedback from opening pattern_99_zip3_360.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_360.pdb #24  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_375.pdb

Summary of feedback from opening pattern_99_zip3_375.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_375.pdb #25  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_390.pdb

Summary of feedback from opening pattern_99_zip3_390.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_390.pdb #26  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_405.pdb

Summary of feedback from opening pattern_99_zip3_405.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_405.pdb #27  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_420.pdb

Summary of feedback from opening pattern_99_zip3_420.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_420.pdb #28  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_435.pdb

Summary of feedback from opening pattern_99_zip3_435.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_435.pdb #29  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_450.pdb

Summary of feedback from opening pattern_99_zip3_450.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_450.pdb #30  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_465.pdb

Summary of feedback from opening pattern_99_zip3_465.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_465.pdb #31  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_480.pdb

Summary of feedback from opening pattern_99_zip3_480.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_480.pdb #32  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_495.pdb

Summary of feedback from opening pattern_99_zip3_495.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_495.pdb #33  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_510.pdb

Summary of feedback from opening pattern_99_zip3_510.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_510.pdb #34  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_525.pdb

Summary of feedback from opening pattern_99_zip3_525.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_525.pdb #35  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_540.pdb

Summary of feedback from opening pattern_99_zip3_540.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_540.pdb #36  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_555.pdb

Summary of feedback from opening pattern_99_zip3_555.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_555.pdb #37  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_570.pdb

Summary of feedback from opening pattern_99_zip3_570.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_570.pdb #38  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_585.pdb

Summary of feedback from opening pattern_99_zip3_585.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_585.pdb #39  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_600.pdb

Summary of feedback from opening pattern_99_zip3_600.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_600.pdb #40  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_615.pdb

Summary of feedback from opening pattern_99_zip3_615.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_615.pdb #41  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_630.pdb

Summary of feedback from opening pattern_99_zip3_630.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_630.pdb #42  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_645.pdb

Summary of feedback from opening pattern_99_zip3_645.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_645.pdb #43  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_660.pdb

Summary of feedback from opening pattern_99_zip3_660.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_660.pdb #44  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_675.pdb

Summary of feedback from opening pattern_99_zip3_675.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_675.pdb #45  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_690.pdb

Summary of feedback from opening pattern_99_zip3_690.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_690.pdb #46  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_705.pdb

Summary of feedback from opening pattern_99_zip3_705.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_705.pdb #47  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_720.pdb

Summary of feedback from opening pattern_99_zip3_720.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_720.pdb #48  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_735.pdb

Summary of feedback from opening pattern_99_zip3_735.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_735.pdb #49  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_750.pdb

Summary of feedback from opening pattern_99_zip3_750.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_750.pdb #50  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_765.pdb

Summary of feedback from opening pattern_99_zip3_765.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_765.pdb #51  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_780.pdb

Summary of feedback from opening pattern_99_zip3_780.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_780.pdb #52  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_795.pdb

Summary of feedback from opening pattern_99_zip3_795.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_795.pdb #53  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_810.pdb

Summary of feedback from opening pattern_99_zip3_810.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_810.pdb #54  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_825.pdb

Summary of feedback from opening pattern_99_zip3_825.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_825.pdb #55  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_840.pdb

Summary of feedback from opening pattern_99_zip3_840.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_840.pdb #56  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_855.pdb

Summary of feedback from opening pattern_99_zip3_855.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_855.pdb #57  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_870.pdb

Summary of feedback from opening pattern_99_zip3_870.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_870.pdb #58  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_885.pdb

Summary of feedback from opening pattern_99_zip3_885.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_885.pdb #59  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_900.pdb

Summary of feedback from opening pattern_99_zip3_900.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_900.pdb #60  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_915.pdb

Summary of feedback from opening pattern_99_zip3_915.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_915.pdb #61  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_930.pdb

Summary of feedback from opening pattern_99_zip3_930.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_930.pdb #62  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_945.pdb

Summary of feedback from opening pattern_99_zip3_945.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_945.pdb #63  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_960.pdb

Summary of feedback from opening pattern_99_zip3_960.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_960.pdb #64  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_975.pdb

Summary of feedback from opening pattern_99_zip3_975.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_975.pdb #65  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_990.pdb

Summary of feedback from opening pattern_99_zip3_990.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_990.pdb #66  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1005.pdb

Summary of feedback from opening pattern_99_zip3_1005.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1005.pdb #67  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1020.pdb

Summary of feedback from opening pattern_99_zip3_1020.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1020.pdb #68  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1035.pdb

Summary of feedback from opening pattern_99_zip3_1035.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1035.pdb #69  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1050.pdb

Summary of feedback from opening pattern_99_zip3_1050.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1050.pdb #70  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1065.pdb

Summary of feedback from opening pattern_99_zip3_1065.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1065.pdb #71  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1080.pdb

Summary of feedback from opening pattern_99_zip3_1080.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1080.pdb #72  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1095.pdb

Summary of feedback from opening pattern_99_zip3_1095.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1095.pdb #73  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1110.pdb

Summary of feedback from opening pattern_99_zip3_1110.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1110.pdb #74  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1125.pdb

Summary of feedback from opening pattern_99_zip3_1125.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1125.pdb #75  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1140.pdb

Summary of feedback from opening pattern_99_zip3_1140.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1140.pdb #76  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1155.pdb

Summary of feedback from opening pattern_99_zip3_1155.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1155.pdb #77  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1170.pdb

Summary of feedback from opening pattern_99_zip3_1170.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1170.pdb #78  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1185.pdb

Summary of feedback from opening pattern_99_zip3_1185.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1185.pdb #79  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1200.pdb

Summary of feedback from opening pattern_99_zip3_1200.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1200.pdb #80  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1215.pdb

Summary of feedback from opening pattern_99_zip3_1215.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1215.pdb #81  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1230.pdb

Summary of feedback from opening pattern_99_zip3_1230.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1230.pdb #82  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1245.pdb

Summary of feedback from opening pattern_99_zip3_1245.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1245.pdb #83  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1260.pdb

Summary of feedback from opening pattern_99_zip3_1260.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1260.pdb #84  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1275.pdb

Summary of feedback from opening pattern_99_zip3_1275.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1275.pdb #85  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1290.pdb

Summary of feedback from opening pattern_99_zip3_1290.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1290.pdb #86  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1305.pdb

Summary of feedback from opening pattern_99_zip3_1305.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1305.pdb #87  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1320.pdb

Summary of feedback from opening pattern_99_zip3_1320.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1320.pdb #88  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1335.pdb

Summary of feedback from opening pattern_99_zip3_1335.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1335.pdb #89  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1350.pdb

Summary of feedback from opening pattern_99_zip3_1350.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1350.pdb #90  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1365.pdb

Summary of feedback from opening pattern_99_zip3_1365.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1365.pdb #91  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1380.pdb

Summary of feedback from opening pattern_99_zip3_1380.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1380.pdb #92  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1395.pdb

Summary of feedback from opening pattern_99_zip3_1395.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1395.pdb #93  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1410.pdb

Summary of feedback from opening pattern_99_zip3_1410.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1410.pdb #94  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1425.pdb

Summary of feedback from opening pattern_99_zip3_1425.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1425.pdb #95  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1440.pdb

Summary of feedback from opening pattern_99_zip3_1440.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1440.pdb #96  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1455.pdb

Summary of feedback from opening pattern_99_zip3_1455.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1455.pdb #97  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1470.pdb

Summary of feedback from opening pattern_99_zip3_1470.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1470.pdb #98  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1485.pdb

Summary of feedback from opening pattern_99_zip3_1485.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1485.pdb #99  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1500.pdb

Summary of feedback from opening pattern_99_zip3_1500.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1500.pdb #100  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1515.pdb

Summary of feedback from opening pattern_99_zip3_1515.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1515.pdb #101  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1530.pdb

Summary of feedback from opening pattern_99_zip3_1530.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1530.pdb #102  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1545.pdb

Summary of feedback from opening pattern_99_zip3_1545.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1545.pdb #103  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1560.pdb

Summary of feedback from opening pattern_99_zip3_1560.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1560.pdb #104  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1575.pdb

Summary of feedback from opening pattern_99_zip3_1575.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1575.pdb #105  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1590.pdb

Summary of feedback from opening pattern_99_zip3_1590.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1590.pdb #106  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1605.pdb

Summary of feedback from opening pattern_99_zip3_1605.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1605.pdb #107  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1620.pdb

Summary of feedback from opening pattern_99_zip3_1620.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1620.pdb #108  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1635.pdb

Summary of feedback from opening pattern_99_zip3_1635.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1635.pdb #109  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1650.pdb

Summary of feedback from opening pattern_99_zip3_1650.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1650.pdb #110  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1665.pdb

Summary of feedback from opening pattern_99_zip3_1665.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1665.pdb #111  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1680.pdb

Summary of feedback from opening pattern_99_zip3_1680.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1680.pdb #112  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1695.pdb

Summary of feedback from opening pattern_99_zip3_1695.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1695.pdb #113  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1710.pdb

Summary of feedback from opening pattern_99_zip3_1710.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1710.pdb #114  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1725.pdb

Summary of feedback from opening pattern_99_zip3_1725.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1725.pdb #115  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1740.pdb

Summary of feedback from opening pattern_99_zip3_1740.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1740.pdb #116  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1755.pdb

Summary of feedback from opening pattern_99_zip3_1755.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1755.pdb #117  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1770.pdb

Summary of feedback from opening pattern_99_zip3_1770.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1770.pdb #118  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1785.pdb

Summary of feedback from opening pattern_99_zip3_1785.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1785.pdb #119  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1800.pdb

Summary of feedback from opening pattern_99_zip3_1800.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1800.pdb #120  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1815.pdb

Summary of feedback from opening pattern_99_zip3_1815.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1815.pdb #121  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1830.pdb

Summary of feedback from opening pattern_99_zip3_1830.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1830.pdb #122  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1845.pdb

Summary of feedback from opening pattern_99_zip3_1845.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1845.pdb #123  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1860.pdb

Summary of feedback from opening pattern_99_zip3_1860.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1860.pdb #124  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1875.pdb

Summary of feedback from opening pattern_99_zip3_1875.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1875.pdb #125  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1890.pdb

Summary of feedback from opening pattern_99_zip3_1890.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1890.pdb #126  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1905.pdb

Summary of feedback from opening pattern_99_zip3_1905.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1905.pdb #127  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1920.pdb

Summary of feedback from opening pattern_99_zip3_1920.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1920.pdb #128  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1935.pdb

Summary of feedback from opening pattern_99_zip3_1935.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1935.pdb #129  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1950.pdb

Summary of feedback from opening pattern_99_zip3_1950.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1950.pdb #130  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1965.pdb

Summary of feedback from opening pattern_99_zip3_1965.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1965.pdb #131  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1980.pdb

Summary of feedback from opening pattern_99_zip3_1980.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1980.pdb #132  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_1995.pdb

Summary of feedback from opening pattern_99_zip3_1995.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_1995.pdb #133  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2010.pdb

Summary of feedback from opening pattern_99_zip3_2010.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2010.pdb #134  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2025.pdb

Summary of feedback from opening pattern_99_zip3_2025.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2025.pdb #135  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2040.pdb

Summary of feedback from opening pattern_99_zip3_2040.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2040.pdb #136  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2055.pdb

Summary of feedback from opening pattern_99_zip3_2055.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2055.pdb #137  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2070.pdb

Summary of feedback from opening pattern_99_zip3_2070.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2070.pdb #138  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2085.pdb

Summary of feedback from opening pattern_99_zip3_2085.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2085.pdb #139  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2100.pdb

Summary of feedback from opening pattern_99_zip3_2100.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2100.pdb #140  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2115.pdb

Summary of feedback from opening pattern_99_zip3_2115.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2115.pdb #141  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2130.pdb

Summary of feedback from opening pattern_99_zip3_2130.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2130.pdb #142  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2145.pdb

Summary of feedback from opening pattern_99_zip3_2145.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2145.pdb #143  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2160.pdb

Summary of feedback from opening pattern_99_zip3_2160.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2160.pdb #144  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2175.pdb

Summary of feedback from opening pattern_99_zip3_2175.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2175.pdb #145  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2190.pdb

Summary of feedback from opening pattern_99_zip3_2190.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2190.pdb #146  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2205.pdb

Summary of feedback from opening pattern_99_zip3_2205.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2205.pdb #147  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2220.pdb

Summary of feedback from opening pattern_99_zip3_2220.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2220.pdb #148  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2235.pdb

Summary of feedback from opening pattern_99_zip3_2235.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2235.pdb #149  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2250.pdb

Summary of feedback from opening pattern_99_zip3_2250.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2250.pdb #150  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2265.pdb

Summary of feedback from opening pattern_99_zip3_2265.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2265.pdb #151  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2280.pdb

Summary of feedback from opening pattern_99_zip3_2280.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2280.pdb #152  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2295.pdb

Summary of feedback from opening pattern_99_zip3_2295.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2295.pdb #153  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2310.pdb

Summary of feedback from opening pattern_99_zip3_2310.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2310.pdb #154  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2325.pdb

Summary of feedback from opening pattern_99_zip3_2325.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2325.pdb #155  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2340.pdb

Summary of feedback from opening pattern_99_zip3_2340.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2340.pdb #156  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2355.pdb

Summary of feedback from opening pattern_99_zip3_2355.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2355.pdb #157  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2370.pdb

Summary of feedback from opening pattern_99_zip3_2370.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2370.pdb #158  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2385.pdb

Summary of feedback from opening pattern_99_zip3_2385.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2385.pdb #159  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2400.pdb

Summary of feedback from opening pattern_99_zip3_2400.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2400.pdb #160  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2415.pdb

Summary of feedback from opening pattern_99_zip3_2415.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2415.pdb #161  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2430.pdb

Summary of feedback from opening pattern_99_zip3_2430.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2430.pdb #162  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2445.pdb

Summary of feedback from opening pattern_99_zip3_2445.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2445.pdb #163  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2460.pdb

Summary of feedback from opening pattern_99_zip3_2460.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2460.pdb #164  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2475.pdb

Summary of feedback from opening pattern_99_zip3_2475.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2475.pdb #165  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2490.pdb

Summary of feedback from opening pattern_99_zip3_2490.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2490.pdb #166  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2505.pdb

Summary of feedback from opening pattern_99_zip3_2505.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2505.pdb #167  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2520.pdb

Summary of feedback from opening pattern_99_zip3_2520.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2520.pdb #168  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2535.pdb

Summary of feedback from opening pattern_99_zip3_2535.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2535.pdb #169  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2550.pdb

Summary of feedback from opening pattern_99_zip3_2550.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2550.pdb #170  
---  
Chain | Description  
A | No description available  
  

> open pattern_99_zip3_2565.pdb

Summary of feedback from opening pattern_99_zip3_2565.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
REMARK - File Generated by RNA_vis.pl - written by Cody Geary  
  
Ignored bad PDB record found on line 2  
REMARK - Building a total of 2410 nts.  
  
Chain information for pattern_99_zip3_2565.pdb #171  
---  
Chain | Description  
A | No description available  
  

> color blue #171

Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels',
'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword  




OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1 Pro
OpenGL vendor: Apple

Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro18,3
      Processor Name: Unknown
      Processor Speed: 2.4 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache: 16 MB
      Memory: 16 GB

Software:

    System Software Overview:

      System Version: macOS 12.5.1 (21G83)
      Kernel Version: Darwin 21.6.0
      Time since boot: 1 day 14:49

Graphics/Displays:

    Apple M1 Pro:

      Chipset Model: Apple M1 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 14
      Vendor: Apple (0x106b)
      Metal Family: Supported, Metal GPUFamily Apple 7
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal


Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    appnope: 0.1.3
    Babel: 2.10.1
    backcall: 0.2.0
    blockdiag: 3.0.0
    certifi: 2021.10.8
    cftime: 1.6.0
    charset-normalizer: 2.0.12
    ChimeraX-AddCharge: 1.2.3
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2.1
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.4.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.39.1
    ChimeraX-AtomicLibrary: 7.0
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.1
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.1.1
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.7
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.1
    ChimeraX-CommandLine: 1.2.3
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.4
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.1
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.2
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.5
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.6
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.7
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.5.5
    ChimeraX-ModelPanel: 1.3.2
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.9
    ChimeraX-PDB: 2.6.6
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.8
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.0.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.1
    ChimeraX-ToolshedUtils: 1.2.1
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.18.3
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.1.2
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    cxservices: 1.2
    cycler: 0.11.0
    Cython: 0.29.26
    debugpy: 1.6.0
    decorator: 5.1.1
    docutils: 0.17.1
    entrypoints: 0.4
    filelock: 3.4.2
    fonttools: 4.33.3
    funcparserlib: 1.0.0
    grako: 3.16.5
    h5py: 3.7.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.27
    imagecodecs: 2021.11.20
    imagesize: 1.3.0
    ipykernel: 6.6.1
    ipython: 7.31.1
    ipython-genutils: 0.2.0
    jedi: 0.18.1
    Jinja2: 3.0.3
    jupyter-client: 7.1.0
    jupyter-core: 4.10.0
    kiwisolver: 1.4.2
    line-profiler: 3.4.0
    lxml: 4.7.1
    lz4: 3.1.10
    MarkupSafe: 2.1.1
    matplotlib: 3.5.1
    matplotlib-inline: 0.1.3
    msgpack: 1.0.3
    nest-asyncio: 1.5.5
    netCDF4: 1.5.8
    networkx: 2.6.3
    numexpr: 2.8.1
    numpy: 1.22.1
    openvr: 1.16.802
    packaging: 21.0
    ParmEd: 3.4.3
    parso: 0.8.3
    pexpect: 4.8.0
    pickleshare: 0.7.5
    Pillow: 9.0.1
    pip: 21.3.1
    pkginfo: 1.8.2
    prompt-toolkit: 3.0.29
    psutil: 5.9.0
    ptyprocess: 0.7.0
    pycollada: 0.7.2
    pydicom: 2.2.2
    Pygments: 2.11.2
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.9
    PyQt6-commercial: 6.3.0
    PyQt6-Qt6: 6.3.0
    PyQt6-sip: 13.3.1
    PyQt6-WebEngine-commercial: 6.3.0
    PyQt6-WebEngine-Qt6: 6.3.0
    python-dateutil: 2.8.2
    pytz: 2022.1
    pyzmq: 23.1.0
    qtconsole: 5.3.0
    QtPy: 2.1.0
    RandomWords: 0.3.0
    requests: 2.27.1
    scipy: 1.7.3
    setuptools: 59.8.0
    sfftk-rw: 0.7.2
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.3.2
    sphinx-autodoc-typehints: 1.15.2
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-community: 1.0.0
    tables: 3.7.0
    tifffile: 2021.11.2
    tinyarray: 1.2.4
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.9
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.1
    wheel-filename: 1.3.0

Change History (3)

comment:1 by pett, 3 years ago

Cc: Greg Couch Tom Goddard added
Component: Unassigned → Core
Owner: set to pett
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Crash in registration dialog after opening dozens of 2400 nucleotide structures

comment:2 by pett, 3 years ago

Resolution: → can't reproduce
Status: accepted → closed

comment:3 by Tom Goddard, 3 years ago

Crashed doing some sub-eventloop processing asking to register.

The included Log is not for this crash. It is the log for the next time they ran ChimeraX where apparently they did a bunch of stuff before deciding to report the preceding crash. Unclear why the Log for the crash was not included.

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