Opened 3 years ago

Closed 3 years ago

Last modified 3 years ago

#7823 closed defect (can't reproduce)

Crossfade: images do not match

Reported by: zhf4001@… Owned by: Tom Goddard
Priority: normal Milestone:
Component: Scenes/Animation Version:
Keywords: Cc:
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.22000
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
(Describe the actions that caused this problem to occur here)

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open
> D:\\\TMEM16\\\nhTMEM16\\\WT\\\DOPCDOPG_Ca\\\segmentation\\\segmentation_all_lipids_100422-v6.cxs

Opened nhWT_Closed_combined map-071222_lipids_all_v2.mrc as #3, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0556, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v3.mrc as #4, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0702, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v4.mrc as #5, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.08, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v5.mrc as #6, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0158, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipid918.mrc as #7, grid size 36,98,36,
pixel 0.825,0.825,0.825, shown at level 0.0157, step 1, values float32  
Opened nhWT_Closed_combined map-071222_lipid918_partial.mrc as #8, grid size
24,82,24, pixel 0.825,0.825,0.825, shown at level 0.000318, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_protein.mrc as #2, grid size
112,174,128, pixel 0.825,0.825,0.825, shown at level 2.04, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v9.mrc as #1, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.0852, step 1, values
float32  
Opened nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v3.mrc as #14, grid size
162,176,90, pixel 0.825,0.825,0.825, shown at level 0.008, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v10.mrc as #15, grid size
128,142,80, pixel 0.825,0.825,0.825, shown at level 0.038, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v11.mrc as #9, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.05, step 1, values
float32  
Log from Tue Oct 4 15:54:32 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open
> D:\\\TMEM16\\\nhTMEM16\\\WT\\\DOPCDOPG_Ca\\\segmentation\\\segmentation_all_lipids_091822-v4.cxs

Opened nhWT_Closed_combined map-071222_lipids_all_v2.mrc as #3, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0556, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v3.mrc as #4, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0702, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v4.mrc as #5, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.08, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v5.mrc as #6, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0158, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipid918.mrc as #7, grid size 36,98,36,
pixel 0.825,0.825,0.825, shown at level 0.0157, step 1, values float32  
Opened nhWT_Closed_combined map-071222_lipid918_partial.mrc as #8, grid size
24,82,24, pixel 0.825,0.825,0.825, shown at level 0.000318, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_protein.mrc as #2, grid size
112,174,128, pixel 0.825,0.825,0.825, shown at level 2.04, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v9.mrc as #1, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.0852, step 1, values
float32  
Opened nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v3.mrc as #14, grid size
162,176,90, pixel 0.825,0.825,0.825, shown at level 0.008, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v10.mrc as #15, grid size
128,142,80, pixel 0.825,0.825,0.825, shown at level 0.038, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v11.mrc as #9, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.05, step 1, values
float32  
Log from Sun Sep 18 09:06:05 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open
> D:\\\TMEM16\\\nhTMEM16\\\WT\\\DOPCDOPG_Ca\\\segmentation\\\segmentation_all_lipids_071722-v3.cxs

Opened nhWT_Closed_combined map-071222_lipids_all_v2.mrc as #3, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0556, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v3.mrc as #4, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0702, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v4.mrc as #5, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.08, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v5.mrc as #6, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0158, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipid918.mrc as #7, grid size 36,98,36,
pixel 0.825,0.825,0.825, shown at level 0.0157, step 1, values float32  
Opened nhWT_Closed_combined map-071222_lipid918_partial.mrc as #8, grid size
24,82,24, pixel 0.825,0.825,0.825, shown at level 0.000318, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_protein.mrc as #2, grid size
112,174,128, pixel 0.825,0.825,0.825, shown at level 2.04, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v9.mrc as #1, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.0852, step 1, values
float32  
Opened nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v3.mrc as #14, grid size
162,176,90, pixel 0.825,0.825,0.825, shown at level 0.00809, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v10.mrc as #15, grid size
128,142,80, pixel 0.825,0.825,0.825, shown at level 0.038, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v11.mrc as #9, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.038, step 1, values
float32  
Log from Tue Jul 19 16:52:25 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open
> D:\\\TMEM16\\\nhTMEM16\\\WT\\\DOPCDOPG_Ca\\\segmentation\\\segmentation_all_lipids_071722-v2.cxs

Opened nhWT_Closed_combined map-071222_lipids_all_v2.mrc as #3, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0556, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v3.mrc as #4, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0702, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v4.mrc as #5, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.08, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v5.mrc as #6, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0158, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipid918.mrc as #7, grid size 36,98,36,
pixel 0.825,0.825,0.825, shown at level 0.0157, step 1, values float32  
Opened nhWT_Closed_combined map-071222_lipid918_partial.mrc as #8, grid size
24,82,24, pixel 0.825,0.825,0.825, shown at level 0.000318, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v6.mrc as #9, grid size
128,142,86, pixel 0.825,0.825,0.825, shown at level 0.0442, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v7.mrc as #10, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.0419, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_protein.mrc as #2, grid size
112,174,128, pixel 0.825,0.825,0.825, shown at level 2.04, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v8.mrc as #11, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.03, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v9.mrc as #1, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.0522, step 1, values
float32  
Log from Sun Jul 17 01:58:24 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  

> open
> D:\\\TMEM16\\\nhTMEM16\\\WT\\\DOPCDOPG_Ca\\\segmentation\\\segmentation_all_lipids_071722.cxs

Opened nhWT_Closed_combined map-071222_lipids_all_v2.mrc as #3, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0556, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v3.mrc as #4, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0702, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v4.mrc as #5, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.08, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v5.mrc as #6, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.0158, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipid918.mrc as #7, grid size 36,98,36,
pixel 0.825,0.825,0.825, shown at level 0.0157, step 1, values float32  
Opened nhWT_Closed_combined map-071222_lipid918_partial.mrc as #8, grid size
24,82,24, pixel 0.825,0.825,0.825, shown at level 0.000318, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v6.mrc as #9, grid size
128,142,86, pixel 0.825,0.825,0.825, shown at level 0.0442, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v7.mrc as #10, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.0419, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_protein.mrc as #2, grid size
112,174,128, pixel 0.825,0.825,0.825, shown at level 2.04, step 1, values
float32  
Opened nhWT_Closed_combined map-071222_lipids_all_v8.mrc as #11, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.0359, step 1, values
float32  
Log from Sun Jul 17 01:38:40 2022UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> "D:\\\TMEM16\\\nhTMEM16\\\WT\\\DOPCDOPG_Ca\\\segmentation\\\nhWT_Closed_combined
> map-071222_liipids_all_v1.mrc"

Opened nhWT_Closed_combined map-071222_liipids_all_v1.mrc as #1, grid size
144,162,124, pixel 0.825,0.825,0.825, shown at level 0.236, step 1, values
float32  

> volume #1 level 0.1403

> lighting soft

> volume #1 level 0.1066

> lighting simple

> lighting full

> lighting soft

> volume #1 level 0.07287

> color #1 red models transparency 0

> color #1 #aa0000 models transparency 0

> set bgColor white

> color #1 #aa8496 models transparency 0

> color #1 #aa475d models transparency 0

> color #1 #aa343c models transparency 0

> open
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nh16_WT_closed_DO_Final.pdb

Chain information for nh16_WT_closed_DO_Final.pdb #2  
---  
Chain | Description  
A B | No description available  
  

> volume #1 level 0.07849

> open "D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v2.mrc"

Opened nhWT_Closed_combined map-071222_lipids_all_v2.mrc as #3, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.347, step 1, values
float32  

> volume #3 level 0.1076

> volume #3 level 0.06084

> volume #3 color #9bff9e

> lighting soft

> lighting simple

> lighting soft

> volume #3 level 0.05564

> open "D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v3.mrc"

Opened nhWT_Closed_combined map-071222_lipids_all_v3.mrc as #4, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.345, step 1, values
float32  

> volume #4 level 0.09175

> volume #4 color #ffcb81

> volume #4 color #75ff3a

> volume #4 color #4cc6ff

> volume #4 color #ffdd55

> volume #4 color #ff557f

> volume #4 color #aa557f

> volume #4 color #55aaff

[Repeated 1 time(s)]

> volume #4 color red

> volume #4 color #ff007f

> volume #4 color #ff0019

> volume #4 color #ff77ab

> volume #4 level 0.0702

[Repeated 1 time(s)]

> open "D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v4.mrc"

Opened nhWT_Closed_combined map-071222_lipids_all_v4.mrc as #5, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.341, step 1, values
float32  

> volume #5 level 0.08537

> volume #5 color #ff4174

> volume #5 level 0.08004

[Repeated 1 time(s)]

> open "D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v5.mrc"

Opened nhWT_Closed_combined map-071222_lipids_all_v5.mrc as #6, grid size
122,142,84, pixel 0.825,0.825,0.825, shown at level 0.337, step 1, values
float32  

> volume #6 level 0.0634

> volume #6 level 0.1108

> volume #6 level 0.05286

> volume #6 color #ff75f4

> volume #6 color #ff5ae1

> volume #6 color #f894ff

> volume #6 color #aaffa1

> volume #6 color #a8ff9e

> volume #6 level 0.1792

> volume #6 level 0.03162

> open "D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipid918.mrc"

Opened nhWT_Closed_combined map-071222_lipid918.mrc as #7, grid size 36,98,36,
pixel 0.825,0.825,0.825, shown at level 1.69e-05, step 1, values float32  

> volume #7 level 0.0107

> volume #7 level 0.01573

> open "D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipid918_partial.mrc"

Opened nhWT_Closed_combined map-071222_lipid918_partial.mrc as #8, grid size
24,82,24, pixel 0.825,0.825,0.825, shown at level 1.22e-06, step 1, values
float32  

> volume #6 level 0.06323

> volume #8 level 0.0003644

> volume #8 level 0.0006809

> volume #8 level 0.0003178

> open "D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v6.mrc"

Opened nhWT_Closed_combined map-071222_lipids_all_v6.mrc as #9, grid size
128,142,86, pixel 0.825,0.825,0.825, shown at level 0.451, step 1, values
float32  

> volume #9 level 0.08837

> volume #9 level 0.07071

> volume #9 level 0.04421

> open "D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v7.mrc"

Opened nhWT_Closed_combined map-071222_lipids_all_v7.mrc as #10, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.43, step 1, values
float32  

> volume #10 level 0.1036

> volume #10 level 0.07015

> volume #10 level 0.1036

> volume #10 level 0.07015

> volume #10 level 0.04504

> lighting simple

> lighting soft

> lighting full

> lighting soft

> volume #10 level 0.01674

> volume #10 level 0.02511

> lighting full

> lighting soft

> color #2 #eb90df transparency 0

> color #2 #eb6bde transparency 0

> color #2 #eb8ce2 transparency 0

> color #2 #eb6ede transparency 0

> color #10 #94e57e models transparency 0

> color #10 #dee58d models transparency 0

> color #10 #6bbae5 models transparency 0

> lighting soft

> close #2

> open "D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_protein.mrc"

Opened nhWT_Closed_combined map-071222_protein.mrc as #2, grid size
112,174,128, pixel 0.825,0.825,0.825, shown at level 7.15, step 1, values
float32  

> volume #2 level 2.143

> volume #2 level 0.6699

> volume #2 level 2.208

> volume #10 level 0.01674

> volume #10 level 0.04185

[Repeated 1 time(s)]

> open "D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v8.mrc"

Opened nhWT_Closed_combined map-071222_lipids_all_v8.mrc as #11, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.357, step 1, values
float32  

> volume #11 level 0.0414

[Repeated 1 time(s)]

> volume #2 color #81a8cc

> volume #11 color #b21e61

> volume #2 color #cccccc

> volume #2 color #b9b9b9

> volume #11 color #b94a62

> volume #11 color red

> volume #11 color #ff007f

> volume #11 color #507fa3

> volume #11 color #4c85a3

> volume #11 color #5b9fc3

> volume #11 color #c36d6d

> volume #11 color #c35050

> volume #11 level 0.01988

> volume #6 level 0.01581

> volume #11 level 0.007172

> volume #11 level 0.03586

> volume #2 level 2.863

> volume #2 level 2.405

> volume #2 level 2.077

> volume #2 level 2.045

> close #1

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/segmentation_all_lipids_071722.cxs

——— End of log from Sun Jul 17 01:38:40 2022 ———

opened ChimeraX session  

> volume #11 level 0.02

> volume #11 level 0.01

> volume #11 level 0.03

> ui tool show "Side View"

> save D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/groove-view.tif width
> 1340 height 775 supersample 3

> save D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/groove-view.tif width
> 2000 height 1157 supersample 3

> save D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/side-view.tif width 2000
> height 1157 supersample 3

> save D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/top-view.tif width 2000
> height 1157 supersample 3

> open "D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v9.mrc"

Opened nhWT_Closed_combined map-071222_lipids_all_v9.mrc as #1, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.416, step 1, values
float32  

> volume #1 color #b25a54

> volume #1 color #b24031

> volume #1 level 0.05215

> open
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/lipids_in_model_resi901-918.pdb

> volume #1 color #b2aa6a

> volume #1 color #54adb2

> volume #1 color #64b256

> volume #1 color #6abe5c

> volume #1 color #5cb9be

> volume #1 color #be5ca4

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/segmentation_all_lipids_071722-v2.cxs

——— End of log from Sun Jul 17 01:58:24 2022 ———

opened ChimeraX session  

> lighting soft

> lighting full

> lighting soft

> lighting simple

> lighting soft

> open
> D:/TMEM16/nhTMEM16/lowpass_filtered_maps/nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v1.mrc

Opened nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v1.mrc as #13, grid size
152,168,84, pixel 0.825,0.825,0.825, shown at level 0.0173, step 1, values
float32  

> volume #13 level 0.0008683

> volume #13 level 0.0004135

> volume #1 color white

> volume #1 color #ff77fd

> volume #13 color #ff77fd

> volume #13 color #9d499d

> volume #13 color #cc5fcc

> close #13

> open
> D:/TMEM16/nhTMEM16/lowpass_filtered_maps/nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v2.mrc

Opened nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v2.mrc as #13, grid size
152,168,84, pixel 0.825,0.825,0.825, shown at level 0.0181, step 1, values
float32  

> volume #13 level 0.001102

> volume #13 color #d3664a

> volume #1 color #ff995e

> volume #1 color white

> volume #1 color #ff995e

> volume #1 color #87e9ff

> volume #1 color #ff5479

> volume #1 color white

> volume #1 color #c4acff

> volume #1 color #ff7366

> volume #1 color #ff7070

> volume #1 color #ff995e

> volume #1 color #ff7070

[Repeated 1 time(s)]

> volume #1 color #ff995e

> volume #13 color #ff995e

> transparency #13 50

> transparency #13 80

> volume #13 level 0.005822

> volume #13 level 0.001828

> volume #1 color #ff7070

> volume #13 color #ff707033

> volume #1 level 0.1431

> volume #1 level 0.06042

> volume #1 level 0.01908

> transparency #13 90

> transparency #13 80

> volume #13 color #ffffff33

> volume #13 color #75000233

> volume #13 color #62000233

> volume #13 color #a6010333

> volume #13 color #a6090c33

> volume #1 color #a6090c

> volume #1 color #fa0e16

> volume #1 color #fa946c

> volume #13 level 0.007015

> volume #13 level 0.007223

> volume #13 level 0.00577

> volume #13 level 0.008104

> open
> D:/TMEM16/nhTMEM16/lowpass_filtered_maps/nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v3.mrc

Opened nhWT_Ca2+_closed_3DRct286_C2_LP10_membrane_v3.mrc as #14, grid size
162,176,90, pixel 0.825,0.825,0.825, shown at level 0.0263, step 1, values
float32  

> volume #14 level 0.02625

> volume #14 level 0.004769

> volume #14 color #ff995e

> transparency #14 80

> volume #14 level 0.005614

> show #!6 models

> hide #!1 models

> show #!1 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> show #!1 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!6 models

> hide #!6 models

> show #!8 models

> hide #!8 models

> show #!3 models

> hide #!3 models

> show #!3 models

> hide #!3 models

> ui tool show "Side View"

> volume #14 level 0.008714

> volume #1 level 0.08522

> open "D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v10.mrc"

Opened nhWT_Closed_combined map-071222_lipids_all_v10.mrc as #15, grid size
128,142,80, pixel 0.825,0.825,0.825, shown at level 0.385, step 1, values
float32  

> volume #15 level 0.02332

> volume #15 level 0.06261

> volume #15 level 0.03904

> open "D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v11.mrc"

Opened nhWT_Closed_combined map-071222_lipids_all_v11.mrc as #16, grid size
128,142,80, pixel 0.825,0.825,0.825, shown at level 0.101, step 1, values
float32  

> volume #16 level 0.02904

> volume #16 level 0.01634

> volume #16 level 0.01271

> close #16

> volume #15 color #ff995e

> volume #15 level 0.08618

> volume #15 level 0.0469

> volume #15 level 0.01547

> volume #15 level 0.01571

> volume #15 level 0.08643

> volume #15 level 0.06286

> volume #15 level 0.055

> volume #15 level 0.03929

> volume #15 level 0.08

> volume #15 level 0.038

> close #13

> close #11

> close #10

> close #9

> open "D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/nhWT_Closed_combined
> map-071222_lipids_all_v11.mrc"

Opened nhWT_Closed_combined map-071222_lipids_all_v11.mrc as #9, grid size
128,142,82, pixel 0.825,0.825,0.825, shown at level 0.411, step 1, values
float32  

> volume #9 level 0.09106

> volume #9 level 0.038

> volume #9 color #ff995e

> volume #9 color #53eeff

> volume #9 color #3cb4ff

> volume #9 color #38aaf0

> volume #9 color #f04c0b

> volume #9 color #a6090c

> volume #9 color #aa0000

> volume #9 color #9e0000

> volume #9 color #ff007f

> volume #9 color #ff557f

> volume #9 color #9f0101

> volume #9 color #530019

> volume #9 color #a30a0a

> volume #9 color white

> volume #9 color #a30a0a

> volume #14 color #a30a0a33

> volume #14 color #a50a0a33

> volume #9 color #cf0d0d

> volume #9 color yellow

> volume #9 color #b6b600

> volume #9 color white

> volume #9 color #c7c733

> volume #14 color #c7c73333

> volume #14 color #c7ab1e33

> volume #14 color #b1c7a233

> volume #14 color #5500ff33

> volume #9 color #1a22c7

> volume #9 color #5796c7

> volume #9 color #6cb3ff

> volume #9 color #558cc8

> volume #9 color blue

> volume #9 color #55aaff

> volume #9 color #c7c733

> volume #9 color #ff55ff

> volume #9 color #cc91b7

> volume #9 color white

> volume #9 color #ac6da0

> volume #9 color #d98aca

> volume #9 color #ff995e

> volume #9 color #ac6da0

> volume #9 color #ffa2ee

> volume #9 color #ee8c58

> volume #9 color #ac6da0

> volume #9 color #dc8ccd

> volume #14 color #dc8ccd33

> volume #14 color #6cb3ff33

> volume #14 color #ff995e33

> volume #9 color #ff995e

> volume #9 color #6cb3ff

> volume #9 color #dc8ccd

> volume #9 color #a30a0a

> volume #9 color #dc8ccd

> volume #14 color #a30a0a33

> volume #14 color #dc8ccd33

> volume #14 color #ff995e33

> volume #14 color #ff547933

> volume #14 color #ff995e33

> volume #14 color #dc8ccd33

> volume #14 color #ff995e33

> volume #9 color #ff995e

> volume #9 color #a30a0a

> volume #14 color #a30a0a33

> volume #14 color #ff101033

> volume #14 color #84080833

> volume #14 color #a30a0a33

> volume #9 color #b30b0b

> volume #9 color #b30000

> volume #9 color #b30003

> volume #9 color #b31920

> volume #9 color #b32528

> volume #14 color #b3252833

> volume #14 color #eb313733

> volume #9 color #a12126

> volume #14 color #a1212633

> volume #14 color #ff995e33

> volume #9 color #ff995e

> volume #9 color #6cb3ff

> volume #14 color #a1212633

> volume #14 color #ff547933

> volume #14 color #dc8ccd33

> volume #14 color #c7c73333

> volume #14 color #ff995e33

> volume #9 color #dc8ccd

> volume #9 color #ff7070

> volume #9 color #ff995e

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/segmentation_all_lipids_071722-v3.cxs

> volume #9 color #b36a42

> volume #9 color #fa935c

> volume #9 color white

> volume #9 color #ffba5a

> volume #14 color #ffba5a33

> transparency #14 60

> transparency #14 90

> transparency #14 70

> transparency #14 80

> volume #14 level 0.005403

> volume #14 level 0.008009

> ui tool show "Side View"

> volume #14 level 0.008087

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/segmentation_all_lipids_071722-v3.cxs
> includeMaps true

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_side_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_side_v1.tif
> width 2000 height 1095 supersample 3

> ui tool show "Side View"

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_groove_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_groove_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_top_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_top_v1.tif
> width 2000 height 1095 supersample 3

> ui tool show "Model Panel"

> hide #12 models

> show #12 models

> hide #12 models

> show #12 models

> hide #12 models

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_top_v1.tif
> width 1415 height 775 supersample 1

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_top_v1.tif
> width 1415 height 775 supersample 4

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_top_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_top_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_side_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_side_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_groove_v1.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lipids+protein_groove_v1.tif
> width 2000 height 1095 supersample 3

> transparency #14 90

> transparency #14 85

> transparency #14 90

> transparency #14 86

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_groove_v2.tif
> width 2000 height 1095 supersample 3

> transparency #14 90

> transparency #14 86

> transparency #14 90

> transparency #14 86

> transparency #14 90

> transparency #14 86

> transparency #14 90

> transparency #14 86

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_side_v2.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/figures/lp_membrane+lipids+protein_top_v2.tif
> width 2000 height 1095 supersample 3

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/segmentation_all_lipids_071722-v3.cxs

——— End of log from Tue Jul 19 16:52:25 2022 ———

opened ChimeraX session  

> hide #!2 models

> show #!2 models

> color #2 #4169E1

> volume #14 level 0.009

> volume #14 level 0.008

> volume #9 level 0.03

> volume #9 level 0.04

> volume #9 level 0.05

> show #!1 models

> hide #!1 models

> show #!15 models

> hide #!15 models

> show #12 models

> hide #12 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> show #!8 models

> hide #!8 models

> ui tool show "Model Panel"

> show #12 models

> hide #12 models

> hide #!9 models

> show #12 models

> hide #12 models

> show #12 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> color #12 #c5cd81 transparency 0

> color #12 #a7cd2a transparency 0

> hide #!9 models

> show #!9 models

> hide #!9 models

> color #12 byelement

> color #12 yellow transparency 0

> color #12 byhetero

> hide #!14 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> color #9 yellow models transparency 0

> show #!9 models

> hide #!9 models

> color #9 #ffba5a models transparency 0

> show #!9 models

> hide #!9 models

> show #!9 models

> show #!14 models

> hide #12 models

> show #12 models

> hide #12 models

> show #12 models

> hide #!14 models

> show #!14 models

> hide #!14 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> hide #!9 models

> show #!9 models

> volume #9 level 0.045

> volume #9 level 0.05

> volume #9 level 0.06

> volume #9 level 0.05

> hide #12 models

> show #!14 models

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/segmentation_all_lipids_091822-v4.cxs

——— End of log from Sun Sep 18 09:06:05 2022 ———

opened ChimeraX session  

> color #2 #4184e1 models transparency 0

> color #2 #2674e1 models transparency 0

> color #2 #246fd7 models transparency 0

> color #2 #226dd7 models transparency 0

> color #2 #4f22d7 models transparency 0

> color #2 #3600d7 models transparency 0

> color #2 #4000ff models transparency 0

> color #2 #d700ff models transparency 0

> color #2 #d7d7ff models transparency 0

> color #2 #d7d7d7 models transparency 0

> lighting soft

> lighting full

> lighting soft

> lighting simple

> lighting soft

> hide #!9 models

> show #!9 models

> hide #!14 models

> show #!14 models

> ui tool show "Side View"

> save
> D:/TMEM16/nhTMEM16/WT/DOPCDOPG_Ca/segmentation/segmentation_all_lipids_100422-v6.cxs
> includeMaps true

——— End of log from Tue Oct 4 15:54:32 2022 ———

opened ChimeraX session  

> transparency #14 0

> movie record

> movie crossfade 25

> transparency #14 80

> turn y 1 90

> wait

Error processing trigger "frame drawn":  
movie crossfade cannot be used until one frame has been recorded.  

> turn -y 1 90

> wait

> turn x 1 90

> wait

> turn -x 1 90

> movie encode C:\Users\fengz/Desktop/spin5.mp4

Movie encoding failed because no images were recorded.  

> movie record

> movie crossfade 25

> transparency #14 80

> turn y 1 90

> wait

> turn -y 1 90

> wait

> turn x 1 90

> wait

> turn -x 1 90

> movie encode

Movie encoding failed because no images were recorded.  

> transparency #14 0

> movie record

> movie crossfade 25

> transparency #14 80

> turn y 1 90

> turn -y 1 90

> turn x 1 90

> turn -x 1 90

> movie encode

Movie encoding failed because no images were recorded.  

> movie encode

Movie encoding failed because no images were recorded.  

> movie encode

Movie encoding failed because no images were recorded.  

> movie record

> movie crossfade 25

> transparency #14 80

> turn y 1 90

> wait 20

> turn -y 1 90

> wait 20

> turn x 1 90

> wait 20

> turn -x 1 90

> movie encode

Movie encoding failed because no images were recorded.  

> movie encode

Movie encoding failed because no images were recorded.  

> movie stop

Not currently recording  

> movie encode

Movie encoding failed because no images were recorded.  

> turn -x 1 90

> turn x 1 90

> transparency #14 0

> movie record

> movie crossfade 25

> transparency #14 80

Traceback (most recent call last):  
File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\core\triggerset.py", line
134, in invoke  
return self._func(self._name, data)  
File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\movie\movie.py", line
177, in capture_image  
self.save_crossfade_images()  
File "D:\ChimeraX 1.3\bin\lib\site-packages\chimerax\movie\movie.py", line
206, in save_crossfade_images  
imagef = Image.blend(image1, image2, float(f)/(frames-1))  
File "D:\ChimeraX 1.3\bin\lib\site-packages\PIL\Image.py", line 3067, in blend  
return im1._new(core.blend(im1.im, im2.im, alpha))  
ValueError: images do not match  
  
Error processing trigger "frame drawn":  
ValueError: images do not match  
  
File "D:\ChimeraX 1.3\bin\lib\site-packages\PIL\Image.py", line 3067, in blend  
return im1._new(core.blend(im1.im, im2.im, alpha))  
  
See log for complete Python traceback.  
  




OpenGL version: 3.3.0 NVIDIA 512.72
OpenGL renderer: NVIDIA GeForce RTX 3060 Laptop GPU/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: Alienware
Model: Alienware m15 Ryzen Ed. R5
OS: Microsoft Windows 11 Home (Build 22000)
Memory: 16,483,872,768
MaxProcessMemory: 137,438,953,344
CPU: 16 AMD Ryzen 7 5800H with Radeon Graphics         
OSLanguage: en-US
Locale: ('en_US', 'cp1252')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (3)

comment:1 by Eric Pettersen, 3 years ago

Component: Unassigned → Scenes/Animation
Owner: set to Tom Goddard
Platform: → all
Project: → ChimeraX
Status: new → assigned
Summary: ChimeraX bug report submission → Crossfade: images do not match

Reported by Zhang Feng

comment:2 by Tom Goddard, 3 years ago

Resolution: → can't reproduce
Status: assigned → closed

One error I see in your ChimeraX Log is

Error processing trigger "frame drawn":  
movie crossfade cannot be used until one frame has been recorded.

This is because you have commands

movie record
movie crossfade 25

That won't work in a movie recording script because no frame has been recorded to start the crossfade. It would need to use "wait 1" to draw one frame like this

movie record
wait 1
movie crossfade

I'm not sure if that is the cause of the traceback and error at the end. That error seems to be something else, like you resized the window in the middle of a crossfade.

It also seems like you might be hand typing these movie commands. The movie command is usually only used in a command script (*.cxc) file. It is not designed to be a realtime screen capture because it does not record frames continuously -- it only records them when the wait command is used or other actions cause the graphics to be drawn. So if you want to make a movie, put the commands in a text file with *.cxc suffix and open that in ChimeraX.

in reply to:  3 ; comment:3 by zhf4001@…, 3 years ago 

Got it! Thanks so much for the information!

Best,
Zhang
________________________________
From: ChimeraX <ChimeraX-bugs-admin@cgl.ucsf.edu>
Sent: Wednesday, October 19, 2022 4:42 PM
Cc: goddard@cgl.ucsf.edu <goddard@cgl.ucsf.edu>; Zhang Feng <zhf4001@med.cornell.edu>
Subject: [EXTERNAL] Re: [ChimeraX] #7823: Crossfade: images do not match

#7823: Crossfade: images do not match
---------------------------------------+-------------------------
          Reporter:  zhf4001@…         |      Owner:  Tom Goddard
              Type:  defect            |     Status:  closed
          Priority:  normal            |  Milestone:
         Component:  Scenes/Animation  |    Version:
        Resolution:  can't reproduce   |   Keywords:
        Blocked By:                    |   Blocking:
Notify when closed:                    |   Platform:  all
           Project:  ChimeraX          |
---------------------------------------+-------------------------
Changes (by Tom Goddard):

 * status:  assigned => closed
 * resolution:   => can't reproduce


Comment:

 One error I see in your ChimeraX Log is

 {{{
 Error processing trigger "frame drawn":
 movie crossfade cannot be used until one frame has been recorded.
 }}}

 This is because you have commands

 movie record
 movie crossfade 25

 That won't work in a movie recording script because no frame has been
 recorded to start the crossfade.  It would need to use "wait 1" to draw
 one frame like this

 movie record
 wait 1
 movie crossfade

 I'm not sure if that is the cause of the traceback and error at the end.
 That error seems to be something else, like you resized the window in the
 middle of a crossfade.

 It also seems like you might be hand typing these movie commands.  The
 movie command is usually only used in a command script (*.cxc) file.  It
 is not designed to be a realtime screen capture because it does not record
 frames continuously -- it only records them when the wait command is used
 or other actions cause the graphics to be drawn.  So if you want to make a
 movie, put the commands in a text file with *.cxc suffix and open that in
 ChimeraX.

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