Opened 3 years ago

Closed 3 years ago

#7793 closed defect (can't reproduce)

Crash in event loop

Reported by: chimerax-bug-report@… Owned by: pett
Priority: normal Milestone:
Component: Core Version:
Keywords: Cc: Tom Goddard
Blocked By: Blocking:
Notify when closed: Platform: all
Project: ChimeraX

Description 

The following bug report has been submitted:
Platform:        Windows-10-10.0.18363
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Windows fatal exception: access violation

Current thread 0x00003b94 (most recent call first):
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: access violation

Current thread 0x00003b94 (most recent call first):
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: access violation

Current thread 0x00003b94 (most recent call first):
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: access violation

Current thread 0x00003b94 (most recent call first):
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: access violation

Current thread 0x00003b94 (most recent call first):
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
Windows fatal exception: access violation

Current thread 0x00003b94 (most recent call first):
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\chimerax\ui\gui.py", line 301 in event_loop
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 867 in init
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\site-packages\ChimeraX_main.py", line 1018 in 
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\runpy.py", line 87 in _run_code
  File "D:\Program Files (x86)\ChimeraX 1.3\bin\lib\runpy.py", line 197 in _run_module_as_main
===== Log before crash start =====
> open E:/huawei/HaozhuoDownloads/PTH1R/mollecule/xiaofenzi/20221013-11.cxs

Opened ZLH_xwide.mrc as #2, grid size 256,256,256, pixel 0.824, shown at level
0.0147, step 1, values float32  
Opened ZLH_xwide.mrc 0 as #3.1, grid size 256,256,256, pixel 0.824, shown at
level 0.0147, step 1, values float32  
Opened ZLH_xwide.mrc 1 as #3.2, grid size 256,256,256, pixel 0.824, shown at
level 0.0147, step 1, values float32  
Opened ZLH_xwide.mrc 2 as #3.3, grid size 256,256,256, pixel 0.824, shown at
level 0.0147, step 1, values float32  
Opened ZLH_xwide.mrc 3 as #3.4, grid size 256,256,256, pixel 0.824, shown at
level 0.0147, step 1, values float32  
Opened ZLH_xwide.mrc 4 as #3.5, grid size 256,256,256, pixel 0.824, shown at
level 0.0147, step 1, values float32  
Opened ZLH_xwide.mrc 5 as #3.6, grid size 256,256,256, pixel 0.824, shown at
level 0.0147, step 1, values float32  
Opened ZLH_xwide.mrc 6 as #3.7, grid size 256,256,256, pixel 0.824, shown at
level 0.0265, step 1, values float32  
opened ChimeraX session  

> save E:/huawei/HaozhuoDownloads/PTH1R/mollecule/xiaofenzi/20221014-1.cxs

> open "E:/huawei/HaozhuoDownloads/PTH1R/mollecule/duotai/PTH34-PTH1R-G112
> Model2_2-coot-21xuyuanjia erliujian2.pdb"

Chain information for PTH34-PTH1R-G112 Model2_2-coot-21xuyuanjia
erliujian2.pdb #4  
---  
Chain | Description  
A | No description available  
B | No description available  
G | No description available  
N | No description available  
P | No description available  
R | No description available  
  

> matchmaker 4# to 1#

Missing or invalid "matchAtoms" argument: invalid atoms specifier  

> hide #!1 models

> hide #!4 atoms

> show #!4 cartoons

> matchmaker #4 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker PCO371_1_lg-coot-12.pdb, chain B (#1) with PTH34-PTH1R-G112
Model2_2-coot-21xuyuanjia erliujian2.pdb, chain B (#4), sequence alignment
score = 1755.9  
RMSD between 340 pruned atom pairs is 0.504 angstroms; (across all 341 pairs:
0.518)  
  

> show #!1 models

> hide #!2 models

> open "E:/huawei/HaozhuoDownloads/PTH1R/mollecule/duotai/PTHrP-PTH1R-Gs
> complex2-Lip-10-coot-18xuyuanjiaerliujian2.pdb"

Summary of feedback from opening
E:/huawei/HaozhuoDownloads/PTH1R/mollecule/duotai/PTHrP-PTH1R-Gs
complex2-Lip-10-coot-18xuyuanjiaerliujian2.pdb  
---  
warnings | End residue of secondary structure not found: HELIX 3 3 GLN A 213
PHE A 215 1 3  
Start residue of secondary structure not found: HELIX 4 4 LEU A 233 TRP A 244
1 12  
Start residue of secondary structure not found: HELIX 5 5 GLN A 261 ALA A 270
1 10  
Start residue of secondary structure not found: HELIX 6 6 PRO A 280 PHE A 282
1 3  
Start residue of secondary structure not found: HELIX 7 7 PRO A 299 THR A 317
1 19  
Start residue of secondary structure not found: HELIX 8 8 ASN A 338 TYR A 358
1 21  
5 messages similar to the above omitted  
  
Chain information for PTHrP-PTH1R-Gs
complex2-Lip-10-coot-18xuyuanjiaerliujian2.pdb #5  
---  
Chain | Description  
A | No description available  
B | No description available  
G | No description available  
N | No description available  
P | No description available  
R | No description available  
  

> hide #!1 models

> hide #!3 models

> hide #!3.7 models

> hide #!4 models

> hide #!5 atoms

> show #!5 cartoons

> show #!4 models

> show #!1 models

> matchmaker #5 to #1

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker PCO371_1_lg-coot-12.pdb, chain B (#1) with PTHrP-PTH1R-Gs
complex2-Lip-10-coot-18xuyuanjiaerliujian2.pdb, chain B (#5), sequence
alignment score = 1737.9  
RMSD between 338 pruned atom pairs is 0.490 angstroms; (across all 341 pairs:
0.544)  
  

> matchmaker #5/R to #1/R

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker PCO371_1_lg-coot-12.pdb, chain R (#1) with PTHrP-PTH1R-Gs
complex2-Lip-10-coot-18xuyuanjiaerliujian2.pdb, chain R (#5), sequence
alignment score = 1250.6  
RMSD between 188 pruned atom pairs is 0.916 angstroms; (across all 257 pairs:
2.625)  
  

> matchmaker #4/R to #1/R

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker PCO371_1_lg-coot-12.pdb, chain R (#1) with PTH34-PTH1R-G112
Model2_2-coot-21xuyuanjia erliujian2.pdb, chain R (#4), sequence alignment
score = 1266  
RMSD between 190 pruned atom pairs is 0.885 angstroms; (across all 257 pairs:
2.709)  
  

> ui tool show "Side View"

> hide #4.1 models

> hide #5.1 models

> save E:/huawei/HaozhuoDownloads/PTH1R/mollecule/xiaofenzi/20221014-2.cxs

> hide #!5 models

> hide #!4 models

> hide #!1 models

> show #!5 models

> open "E:/huawei/HaozhuoDownloads/PTH1R/mollecule/PTH1R paper2/20220928.cxs"

opened ChimeraX session  

> open "E:/huawei/HaozhuoDownloads/PTH1R/mollecule/PTH1R
> paper2/20220909-4.cxs"

opened ChimeraX session  

> hide #!3 models

> show #!8 models

> show #!7 models

> show #!7-8 cartoons

> hide #!8 models

> hide #!7 models

> show #!8 models

> open E:/huawei/HaozhuoDownloads/PTH1R/mollecule/xiaofenzi/20221014-2.cxs

Opened ZLH_xwide.mrc as #2, grid size 256,256,256, pixel 0.824, shown at level
0.0147, step 1, values float32  
Opened ZLH_xwide.mrc 0 as #3.1, grid size 256,256,256, pixel 0.824, shown at
level 0.0147, step 1, values float32  
Opened ZLH_xwide.mrc 1 as #3.2, grid size 256,256,256, pixel 0.824, shown at
level 0.0147, step 1, values float32  
Opened ZLH_xwide.mrc 2 as #3.3, grid size 256,256,256, pixel 0.824, shown at
level 0.0147, step 1, values float32  
Opened ZLH_xwide.mrc 3 as #3.4, grid size 256,256,256, pixel 0.824, shown at
level 0.0147, step 1, values float32  
Opened ZLH_xwide.mrc 4 as #3.5, grid size 256,256,256, pixel 0.824, shown at
level 0.0147, step 1, values float32  
Opened ZLH_xwide.mrc 5 as #3.6, grid size 256,256,256, pixel 0.824, shown at
level 0.0147, step 1, values float32  
Opened ZLH_xwide.mrc 6 as #3.7, grid size 256,256,256, pixel 0.824, shown at
level 0.0265, step 1, values float32  
opened ChimeraX session  

> open "E:/huawei/HaozhuoDownloads/PTH1R/mollecule/duotai/PTHrP-PTH1R-Gs
> complex2-Lip-10-coot-18xuyuanjiaerliujian.pdb"

Chain information for PTHrP-PTH1R-Gs
complex2-Lip-10-coot-18xuyuanjiaerliujian.pdb #6  
---  
Chain | Description  
A | No description available  
B | No description available  
G | No description available  
N | No description available  
P | No description available  
R | No description available  
  

> hide #!1 models

> hide #!4 models

> hide #!5 models

> hide #!6 atoms

> show #!6 cartoons

> matchmaker #6/R to #1/R

Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker PCO371_1_lg-coot-12.pdb, chain R (#1) with PTHrP-PTH1R-Gs
complex2-Lip-10-coot-18xuyuanjiaerliujian.pdb, chain R (#6), sequence
alignment score = 1250.6  
RMSD between 188 pruned atom pairs is 0.916 angstroms; (across all 257 pairs:
2.625)  
  

> show #!1 models

> show #!5 models

> show #!4 models

> hide #!5 models

> save E:/huawei/HaozhuoDownloads/PTH1R/mollecule/xiaofenzi/20221014-2.cxs

> select #4/R

3142 atoms, 3242 bonds, 4 pseudobonds, 367 residues, 2 models selected  

> color (#!4 & sel) cyan

> color (#!4 & sel) medium blue

> ui tool show "Color Actions"

> color sel slate blue

> color sel rebecca purple

> color sel royal blue

> color sel deep sky blue

> color sel royal blue

> hide #!6 models

> color sel sky blue

> lighting soft

> lighting simple

> lighting full

> transparency 0 cartoons

> cartoon style width 1.5 thickness 0.3

> color sel royal blue

> select #4/P

289 atoms, 294 bonds, 34 residues, 1 model selected  

> color sel light coral

> select #6/R

3029 atoms, 3119 bonds, 3 pseudobonds, 369 residues, 2 models selected  

> select #6/R

3029 atoms, 3119 bonds, 3 pseudobonds, 369 residues, 2 models selected  

> show #!6 models

> color sel purple

> color sel light slate gray

> color sel peru

> color sel dark khaki

> color sel olive

> color sel dark khaki

> select clear

> select #6/P

302 atoms, 308 bonds, 36 residues, 1 model selected  

> ui tool show "Color Actions"

> color sel hot pink

> color sel sienna

> color sel gold

> color sel sandy brown

> color sel green yellow

> color sel olive drab

> lighting simple

> lighting soft

> lighting full

> lighting simple

> lighting soft

> lighting full

> color sel orange red

> color sel red

> color sel maroon

> color sel fire brick

> color sel brown

> color sel chocolate

> color sel coral

> color sel indian red

> color sel dark salmon

> color sel salmon

> color sel medium violet red

> color sel dark orchid

> color sel medium violet red

> select #6/R

3029 atoms, 3119 bonds, 3 pseudobonds, 369 residues, 2 models selected  

> color sel light blue

> color sel burly wood

> color sel dark khaki

> color sel dark goldenrod

> color sel dark khaki

> color sel yellow green

> color sel dark khaki

> select clear

> select #4/A

1950 atoms, 1989 bonds, 1 pseudobond, 235 residues, 2 models selected  

> color sel olive drab

> color sel dark salmon

> hide #!6 models

> select #4/B

2615 atoms, 2662 bonds, 341 residues, 1 model selected  

> color sel olive

> color sel olive drab

> color sel khaki

> select #4/G

437 atoms, 443 bonds, 57 residues, 1 model selected  

> color sel pale green

> color sel dark sea green

> select #4/N

984 atoms, 1005 bonds, 129 residues, 1 model selected  

> color sel dark gray

> color sel tan

> color sel plum

> show #!6 models

> select #6/R

3029 atoms, 3119 bonds, 3 pseudobonds, 369 residues, 2 models selected  

> color sel burly wood

> undo

> select #6/A

1950 atoms, 1989 bonds, 1 pseudobond, 235 residues, 2 models selected  

> color sel burly wood

> color sel thistle

> color sel violet

> color sel peru

> color sel deep sky blue

> color sel chocolate

> color sel lime

> color sel pale violet red

> color sel purple

> color sel magenta

> select #6/B

2616 atoms, 2663 bonds, 341 residues, 1 model selected  

> color sel tan

> color sel rosy brown

> lighting soft

> color sel dark green

> color sel forest green

> select #6/G

436 atoms, 442 bonds, 57 residues, 1 model selected  

> color sel forest green

> color sel light sky blue

> lighting simple

> lighting soft

> lighting full

> color sel aquamarine

> color sel pale green

> select #6/N

983 atoms, 1005 bonds, 129 residues, 1 model selected  

> color sel silver

> color sel powder blue

> color sel blue violet

> color sel slate blue

> select #6/B

2616 atoms, 2663 bonds, 341 residues, 1 model selected  

> color sel rosy brown

> color sel orchid

> color sel wheat

> color sel beige

> color sel white smoke

> color sel mint cream

> color sel pink

> color sel dark violet

> color sel pale violet red

> color sel medium purple

> color sel dark magenta

> color sel purple

> select clear

> save 20221014-PTH1R-1.tif width 2000 height 2000 supersample 3
> transparentBackground true

> transparency 10 cartoons

> save 20221014-PTH1R-2.tif width 2000 height 2000 supersample 3
> transparentBackground true

> ui tool show "Side View"

> save 20221014-PTH1R-2.tif width 2000 height 2000 supersample 3
> transparentBackground true

> transparency 5 cartoons

> save 20221014-PTH1R-3.tif width 2000 height 2000 supersample 3
> transparentBackground true

> hide #6.1 models

> save 20221014-PTH1R-3.tif width 2000 height 2000 supersample 3
> transparentBackground true

> select #4/A

1950 atoms, 1989 bonds, 1 pseudobond, 235 residues, 2 models selected  

> color sel orchid

> color sel blue violet

> save E:/huawei/HaozhuoDownloads/PTH1R/mollecule/xiaofenzi/20221014-3.cxs

> select #1/B#4/B#5/B#6/B

10463 atoms, 10651 bonds, 1364 residues, 4 models selected  

> cartoon hide (#!1,4,6 & sel)

> select #1/B#4/B#5/B#6/B

10463 atoms, 10651 bonds, 1364 residues, 4 models selected  

> select #1/G#4/G#5/G#6/G

1745 atoms, 1769 bonds, 228 residues, 4 models selected  

> cartoon hide (#!1,4,6 & sel)

> select #1/N#4/N#5/N#6/N

3930 atoms, 4016 bonds, 516 residues, 4 models selected  

> cartoon hide (#!1,4,6 & sel)

> save 20221014-PTH1R-4.tif width 2000 height 2000 supersample 3
> transparentBackground true

> hide #!6 models

> show #!6 models


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.3 (2021-12-08)  
© 2016-2021 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 3.3.0 NVIDIA 513.29
OpenGL renderer: NVIDIA GeForce MX150/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Manufacturer: LENOVO
Model: 20L6A09YCD
OS: Microsoft Windows 10 家庭中文版 (Build 18363)
Memory: 17,027,555,328
MaxProcessMemory: 137,438,953,344
CPU: 8 Intel(R) Core(TM) i7-8550U CPU @ 1.80GHz
OSLanguage: zh-CN
Locale: ('zh_CN', 'cp936')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
    alabaster: 0.7.12
    appdirs: 1.4.4
    Babel: 2.9.1
    backcall: 0.2.0
    blockdiag: 2.0.1
    certifi: 2021.10.8
    cftime: 1.5.1.1
    charset-normalizer: 2.0.9
    ChimeraX-AddCharge: 1.2.2
    ChimeraX-AddH: 2.1.11
    ChimeraX-AlignmentAlgorithms: 2.0
    ChimeraX-AlignmentHdrs: 3.2
    ChimeraX-AlignmentMatrices: 2.0
    ChimeraX-Alignments: 2.2.3
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.0.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.0
    ChimeraX-Atomic: 1.31
    ChimeraX-AtomicLibrary: 4.2
    ChimeraX-AtomSearch: 2.0
    ChimeraX-AtomSearchLibrary: 1.0
    ChimeraX-AxesPlanes: 2.0
    ChimeraX-BasicActions: 1.1
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.0
    ChimeraX-BondRot: 2.0
    ChimeraX-BugReporter: 1.0
    ChimeraX-BuildStructure: 2.6.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.1
    ChimeraX-ButtonPanel: 1.0
    ChimeraX-CageBuilder: 1.0
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.2
    ChimeraX-ChemGroup: 2.0
    ChimeraX-Clashes: 2.2.2
    ChimeraX-ColorActions: 1.0
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5
    ChimeraX-CommandLine: 1.1.5
    ChimeraX-ConnectStructure: 2.0
    ChimeraX-Contacts: 1.0
    ChimeraX-Core: 1.3
    ChimeraX-CoreFormats: 1.1
    ChimeraX-coulombic: 1.3.2
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0
    ChimeraX-DataFormats: 1.2.2
    ChimeraX-Dicom: 1.0
    ChimeraX-DistMonitor: 1.1.5
    ChimeraX-DistUI: 1.0
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ExperimentalCommands: 1.0
    ChimeraX-FileHistory: 1.0
    ChimeraX-FunctionKey: 1.0
    ChimeraX-Geometry: 1.1
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1
    ChimeraX-Hbonds: 2.1.2
    ChimeraX-Help: 1.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0
    ChimeraX-Label: 1.1
    ChimeraX-ListInfo: 1.1.1
    ChimeraX-Log: 1.1.4
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.8.1
    ChimeraX-Map: 1.1
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0
    ChimeraX-MapFilter: 2.0
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1
    ChimeraX-Markers: 1.0
    ChimeraX-Mask: 1.0
    ChimeraX-MatchMaker: 2.0.4
    ChimeraX-MDcrds: 2.6
    ChimeraX-MedicalToolbar: 1.0.1
    ChimeraX-Meeting: 1.0
    ChimeraX-MLP: 1.1
    ChimeraX-mmCIF: 2.4
    ChimeraX-MMTF: 2.1
    ChimeraX-Modeller: 1.2.6
    ChimeraX-ModelPanel: 1.2.1
    ChimeraX-ModelSeries: 1.0
    ChimeraX-Mol2: 2.0
    ChimeraX-Morph: 1.0
    ChimeraX-MouseModes: 1.1
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nucleotides: 2.0.2
    ChimeraX-OpenCommand: 1.7
    ChimeraX-PDB: 2.6.5
    ChimeraX-PDBBio: 1.0
    ChimeraX-PDBLibrary: 1.0.2
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.0.1
    ChimeraX-PubChem: 2.1
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1
    ChimeraX-RemoteControl: 1.0
    ChimeraX-ResidueFit: 1.0
    ChimeraX-RestServer: 1.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 2.0.1
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.4.6
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0
    ChimeraX-Shortcuts: 1.1
    ChimeraX-ShowAttr: 1.0
    ChimeraX-ShowSequences: 1.0
    ChimeraX-SideView: 1.0
    ChimeraX-Smiles: 2.1
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.6.1
    ChimeraX-STL: 1.0
    ChimeraX-Storm: 1.0
    ChimeraX-Struts: 1.0
    ChimeraX-Surface: 1.0
    ChimeraX-SwapAA: 2.0
    ChimeraX-SwapRes: 2.1
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1
    ChimeraX-ToolshedUtils: 1.2
    ChimeraX-Tug: 1.0
    ChimeraX-UI: 1.13.7
    ChimeraX-uniprot: 2.2
    ChimeraX-UnitCell: 1.0
    ChimeraX-ViewDockX: 1.0.1
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0
    ChimeraX-WebServices: 1.0
    ChimeraX-Zone: 1.0
    colorama: 0.4.4
    comtypes: 1.1.10
    cxservices: 1.1
    cycler: 0.11.0
    Cython: 0.29.24
    decorator: 5.1.0
    docutils: 0.17.1
    filelock: 3.0.12
    funcparserlib: 0.3.6
    grako: 3.16.5
    h5py: 3.6.0
    html2text: 2020.1.16
    idna: 3.3
    ihm: 0.21
    imagecodecs: 2021.4.28
    imagesize: 1.3.0
    ipykernel: 5.5.5
    ipython: 7.23.1
    ipython-genutils: 0.2.0
    jedi: 0.18.0
    Jinja2: 3.0.1
    jupyter-client: 6.1.12
    jupyter-core: 4.9.1
    kiwisolver: 1.3.2
    lxml: 4.6.3
    lz4: 3.1.3
    MarkupSafe: 2.0.1
    matplotlib: 3.4.3
    matplotlib-inline: 0.1.3
    msgpack: 1.0.2
    netCDF4: 1.5.7
    networkx: 2.6.3
    numexpr: 2.8.0
    numpy: 1.21.2
    openvr: 1.16.801
    packaging: 21.3
    ParmEd: 3.2.0
    parso: 0.8.3
    pickleshare: 0.7.5
    Pillow: 8.3.2
    pip: 21.2.4
    pkginfo: 1.7.1
    prompt-toolkit: 3.0.23
    psutil: 5.8.0
    pycollada: 0.7.1
    pydicom: 2.1.2
    Pygments: 2.10.0
    PyOpenGL: 3.1.5
    PyOpenGL-accelerate: 3.1.5
    pyparsing: 3.0.6
    PyQt5-commercial: 5.15.2
    PyQt5-sip: 12.8.1
    PyQtWebEngine-commercial: 5.15.2
    python-dateutil: 2.8.2
    pytz: 2021.3
    pywin32: 228
    pyzmq: 22.3.0
    qtconsole: 5.1.1
    QtPy: 1.11.3
    RandomWords: 0.3.0
    requests: 2.26.0
    scipy: 1.7.1
    setuptools: 57.5.0
    sfftk-rw: 0.7.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    Sphinx: 4.2.0
    sphinx-autodoc-typehints: 1.12.0
    sphinxcontrib-applehelp: 1.0.2
    sphinxcontrib-blockdiag: 2.0.0
    sphinxcontrib-devhelp: 1.0.2
    sphinxcontrib-htmlhelp: 2.0.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.3
    sphinxcontrib-serializinghtml: 1.1.5
    suds-jurko: 0.6
    tables: 3.6.1
    tifffile: 2021.4.8
    tinyarray: 1.2.3
    tornado: 6.1
    traitlets: 5.1.1
    urllib3: 1.26.7
    wcwidth: 0.2.5
    webcolors: 1.11.1
    wheel: 0.37.0
    wheel-filename: 1.3.0
    WMI: 1.5.1

Change History (2)

comment:1 by pett, 3 years ago

Cc: Tom Goddard added
Component: Unassigned → Core
Owner: set to pett
Platform: → all
Project: → ChimeraX
Status: new → accepted
Summary: ChimeraX bug report submission → Crash in event loop

comment:2 by pett, 3 years ago

Resolution: → can't reproduce
Status: accepted → closed
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