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Opened 3 years ago
Closed 3 years ago
#7798 closed defect (duplicate)
Basic Actions session save: 'QEventLoop' object has no attribute 'exec_'
| Reported by: | Owned by: | Zach Pearson | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Sessions | Version: | |
| Keywords: | Cc: | ||
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: Windows-10-10.0.19044
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> ui tool show Registration
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requested you will be helping us document the impact this software is having
in the scientific community. The information you supplied will only be used
for reporting summary usage statistics; no individual data will be released.
Seyran-M@ulster.ac.uk is subscribed to the ChimeraX announcements list
> open "C:/Users/PC/Desktop/Hydrogel Chronic Wounds/review second round/figure
> templates/keratin filaments/3tnu.pdb"
3tnu.pdb title:
Heterocomplex of coil 2B domains of human intermediate filament proteins,
keratin 5 (KRT5) and keratin 14 (KRT14) [more info...]
Chain information for 3tnu.pdb #1
---
Chain | Description | UniProt
A | keratin, type I cytoskeletal 14 | K1C14_HUMAN
B | keratin, type II cytoskeletal 5 | K2C5_HUMAN
> set bgColor white
> open "C:/Users/PC/Desktop/Hydrogel Chronic Wounds/review second round/figure
> templates/keratin filaments/6ec0.pdb"
6ec0.pdb title:
Crystal structure of the wild-type heterocomplex between coil 1B domains of
human intermediate filament proteins keratin 1 (KRT1) and keratin 10 (KRT10)
[more info...]
Chain information for 6ec0.pdb #2
---
Chain | Description | UniProt
A | keratin 1 | H6VRG1_HUMAN
B | keratin, type I cytoskeletal 10 | K1C10_HUMAN
Non-standard residues in 6ec0.pdb #2
---
CD — cadmium ion
CO — cobalt (II) ion
NI — nickel (II) ion
> open "C:/Users/PC/Desktop/Hydrogel Chronic Wounds/review second round/figure
> templates/keratin filaments/3tnu.pdb"
3tnu.pdb title:
Heterocomplex of coil 2B domains of human intermediate filament proteins,
keratin 5 (KRT5) and keratin 14 (KRT14) [more info...]
Chain information for 3tnu.pdb #3
---
Chain | Description | UniProt
A | keratin, type I cytoskeletal 14 | K1C14_HUMAN
B | keratin, type II cytoskeletal 5 | K2C5_HUMAN
> select clear
> select
6496 atoms, 6464 bonds, 6 pseudobonds, 634 residues, 4 models selected
> select clear
> close session
> open "C:\Users\PC\Desktop\Hydrogel Chronic Wounds\review second round\figure
> templates\keratin filaments\3tnu.pdb" format pdb
3tnu.pdb title:
Heterocomplex of coil 2B domains of human intermediate filament proteins,
keratin 5 (KRT5) and keratin 14 (KRT14) [more info...]
Chain information for 3tnu.pdb #1
---
Chain | Description | UniProt
A | keratin, type I cytoskeletal 14 | K1C14_HUMAN
B | keratin, type II cytoskeletal 5 | K2C5_HUMAN
> set bgColor white
> hide surfaces
> select
1510 atoms, 1508 bonds, 191 residues, 1 model selected
> hide sel surfaces
> hide sel cartoons
> show sel cartoons
> hide sel atoms
[Repeated 1 time(s)]
> show sel atoms
> hide sel atoms
> color sel bychain
> color sel byhetero
> show sel surfaces
> save "C:/Users/PC/Desktop/Hydrogel Chronic Wounds/review second
> round/compile/Keratin 7 14.bmp" width 787 height 507 supersample 3
> hide sel surfaces
> transparency (#!1 & sel) 50
> transparency (#!1 & sel) 90
> select ::name="CYS"
18 atoms, 15 bonds, 3 residues, 1 model selected
> show sel surfaces
> style sel sphere
Changed 18 atom styles
> style sel sphere
Changed 18 atom styles
> show sel surfaces
> select
1510 atoms, 1508 bonds, 191 residues, 1 model selected
> show sel surfaces
> hide sel surfaces
> select ::name="CYS"
18 atoms, 15 bonds, 3 residues, 1 model selected
> style sel sphere
Changed 18 atom styles
> style sel ball
Changed 18 atom styles
> style sel sphere
Changed 18 atom styles
> ui mousemode right "mark surface"
> marker #2 position 32,40.3,46.47 color yellow radius 1
> ui mousemode right "mark surface"
> marker #2 position 58.4,40.35,66.5 color yellow radius 1
> select ::name="CYS"
18 atoms, 15 bonds, 3 residues, 1 model selected
> ui mousemode right "mark surface"
> ui mousemode right "mark plane"
> ui mousemode right "mark surface"
[Repeated 1 time(s)]
> marker #2 position 18.61,35.04,29.51 color yellow radius 1
> ui mousemode right "resize markers"
[Repeated 11 time(s)]
> ui mousemode right "link markers"
> ui mousemode right "mark center"
> ui mousemode right "mark surface"
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> color sel bypolymer
> rainbow sel
> coulombic sel
Using Amber 20 recommended default charges and atom types for standard
residues
Assigning partial charges to residue mark (net charge +0) with am1-bcc method
Could not determine GAFF type for atom markers #2/M mark 3 M
Coulombic values for markers_M SES surface #2.1: minimum, 0.00, mean 0.00,
maximum 0.00
To also show corresponding color key, enter the above coulombic command and
add key true
> nucleotides sel atoms
> style nucleic & sel stick
Changed 0 atom styles
> marker #2 position 58.75,40.76,65.66 color yellow radius 1
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> ui mousemode right select
> select #2/M:4@M
1 atom, 1 residue, 1 model selected
> ui mousemode right "delete markers"
[Repeated 1 time(s)]
> ui mousemode right "mark surface"
> ui mousemode right "move markers"
> marker change #2:4 position 58.56,40.55,65.86
> marker change #2:4 position 59.04,42.41,62.64
[Repeated 1 time(s)]
> ui mousemode right "delete markers"
> marker delete #2:4
> ui mousemode right rotate
> ui mousemode right select
> ui mousemode right zoom
> ui mousemode right translate
> ui mousemode right "resize markers"
> marker change #2:2 radius 1
[Repeated 2 time(s)]
> ui mousemode right "mark plane"
> ui mousemode right select
> select #2/M:2@M
1 atom, 1 residue, 1 model selected
> ui mousemode right "resize markers"
> marker change #2:2 radius 1
> marker change #2:2 radius 2
> marker change #2:1 radius 1
> ui mousemode right select
> marker change #2:2 radius 2
> ui mousemode right "mark plane"
> ui mousemode right "mark maximum"
> ui mousemode right "mark plane"
> ui mousemode right select
> select #2/M:1@M
1 atom, 1 residue, 1 model selected
> marker change #2:1 radius 2
> select #2/M:3@M
1 atom, 1 residue, 1 model selected
> marker change #2:3 radius 2
> select clear
> ui mousemode right rotate
> ui mousemode right select
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> select clear
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> ui mousemode right translate
> ui mousemode right select
> ui mousemode right "mark plane"
> ui mousemode right "mark surface"
> marker #2 position 66.95,34.17,86.02 color yellow radius 2
> marker #2 position 66.8,36.12,86.43 color yellow radius 2
> marker change #2:6 color #55ff00
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> ui mousemode right rotate
> ui mousemode right "rotate selected models"
> ui mousemode right rotate
> ui mousemode right select
> ui mousemode right "mark surface"
> marker #2 position 55.96,32.21,73.31 color #55ff00 radius 2
> ui mousemode right translate
> ui mousemode right rotate
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> ui mousemode right zoom
> select up
1463 atoms, 1467 bonds, 179 residues, 3 models selected
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> ui mousemode right translate
> ui mousemode right "mark surface"
> marker #2 position 5.036,44.59,14.13 color #55ff00 radius 2
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> marker #2 position 0.8222,45.15,12.08 color #55ff00 radius 2
> ui mousemode right rotate
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> ui mousemode right "mark surface"
> marker #2 position 0.2938,40.88,18.35 color #55ff00 radius 2
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> marker #2 position 12.12,37.28,33.3 color #55ff00 radius 2
> undo
> marker #2 position 12.04,35.35,32.76 color #55ff00 radius 2
> ui mousemode right "delete markers"
> ui mousemode right "mark surface"
> ui mousemode right "delete markers"
> marker delete #2:12
> ui mousemode right "mark plane"
> ui mousemode right "mark surface"
> ui mousemode right "delete markers"
> ui mousemode right select
> ui mousemode right "delete markers"
[Repeated 1 time(s)]
> marker delete #2:11
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> ui mousemode right "mark surface"
> marker #2 position 12.15,37.35,33.6 color #55ff00 radius 2
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> ui mousemode right "mark surface"
[Repeated 1 time(s)]
> marker #2 position 31.7,41.49,50.17 color #55ff00 radius 2
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> ui mousemode right "mark surface"
> marker #2 position 40,38.65,59.54 color #55ff00 radius 2
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> ui mousemode right rotate
> ui mousemode right "mark surface"
> marker #2 position 59.94,36.3,70.25 color #55ff00 radius 2
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> select ::name="MET"
72 atoms, 63 bonds, 9 residues, 1 model selected
> ui mousemode right "delete markers"
> marker delete #2:6
> marker delete #2:5
> ui mousemode right "mark surface"
> marker #2 position 66.79,34.12,85.69 color #55ff00 radius 2
> ui mousemode right translate
> select
> ::name="ALA"::name="ARG"::name="ASN"::name="ASP"::name="CYS"::name="GLN"::name="GLU"::name="GLY"::name="HIS"::name="ILE"::name="LEU"::name="LYS"::name="MET"::name="SER"::name="THR"::name="TYR"::name="VAL"
1504 atoms, 1508 bonds, 185 residues, 1 model selected
> select ::name="TYR"
60 atoms, 60 bonds, 5 residues, 1 model selected
> select ::name="TYR"
60 atoms, 60 bonds, 5 residues, 1 model selected
> ui mousemode right "mark surface"
[Repeated 1 time(s)]
> marker #2 position 87.46,34.38,93.02 color #55ff00 radius 2
> marker change #2:18 color #ff5500
> select ::name="TYR"
60 atoms, 60 bonds, 5 residues, 1 model selected
> ui mousemode right "mark surface"
> marker #2 position 67.56,36.33,77.34 color #ff5500 radius 2
> select ::name="TYR"
60 atoms, 60 bonds, 5 residues, 1 model selected
> select up
1463 atoms, 1467 bonds, 179 residues, 3 models selected
> select ::name="TYR"
60 atoms, 60 bonds, 5 residues, 1 model selected
> marker #2 position 29.4,36.79,47.74 color #ff5500 radius 2
> select ::name="TYR"
60 atoms, 60 bonds, 5 residues, 1 model selected
> select ::name="TYR"
60 atoms, 60 bonds, 5 residues, 1 model selected
> ui mousemode right "mark surface"
> marker #2 position 82.38,33.76,98.88 color #ff5500 radius 2
> select ::name="TYR"
60 atoms, 60 bonds, 5 residues, 1 model selected
> marker #2 position 63.6,32.31,80.32 color #ff5500 radius 2
> select ::name="TYR"
60 atoms, 60 bonds, 5 residues, 1 model selected
> undo
[Repeated 2 time(s)]
> ui mousemode right rotate
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected models"
> ui tool show "Basic Actions"
> ui tool show "Color Actions"
> ui mousemode right translate
> ui mousemode right rotate
> ui tool show "Color Key"
> ui mousemode right "color key"
> ui mousemode right rotate
> ui tool show "Color Key"
> ui mousemode right "color key"
> ui mousemode right rotate
> ui tool show "Color Key"
> ui mousemode right "color key"
> key delete
> ui mousemode right rotate
> save "C:/Users/PC/Desktop/Hydrogel Chronic Wounds/review second
> round/compile/keratin marked .cxs"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 225, in take_snapshot
self.add_webview_state(data)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 260, in add_webview_state
event_loop.exec_()
AttributeError: 'QEventLoop' object has no attribute 'exec_'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 625, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x000002914D5C5E80> -> <chimerax.basic_actions.tool.BasicActionsTool object at
0x000002916C8D5070> 'Basic Actions': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
ValueError: error processing: 'tools' -> -> 'Basic Actions': Error while
saving session data for 'tools' -> -> 'Basic Actions'
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 225, in take_snapshot
self.add_webview_state(data)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 260, in add_webview_state
event_loop.exec_()
AttributeError: 'QEventLoop' object has no attribute 'exec_'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 116, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 51, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 75, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 90, in provider_save
saver_info.save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core_formats\\__init__.py", line 84, in save
return cxs_save(session, path, **kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 625, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x000002914D5C5E80> -> <chimerax.basic_actions.tool.BasicActionsTool object at
0x000002916C8D5070> 'Basic Actions': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
ValueError: error processing: 'tools' -> -> 'Basic Actions': Error while
saving session data for 'tools' -> -> 'Basic Actions'
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
> save "C:/Users/PC/Desktop/Hydrogel Chronic Wounds/review second
> round/compile/keratin.cxs"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 225, in take_snapshot
self.add_webview_state(data)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 260, in add_webview_state
event_loop.exec_()
AttributeError: 'QEventLoop' object has no attribute 'exec_'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 625, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x000002914D5C5E80> -> <chimerax.basic_actions.tool.BasicActionsTool object at
0x000002916C8D5070> 'Basic Actions': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
ValueError: error processing: 'tools' -> -> 'Basic Actions': Error while
saving session data for 'tools' -> -> 'Basic Actions'
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 225, in take_snapshot
self.add_webview_state(data)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 260, in add_webview_state
event_loop.exec_()
AttributeError: 'QEventLoop' object has no attribute 'exec_'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 116, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 51, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 75, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 90, in provider_save
saver_info.save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core_formats\\__init__.py", line 84, in save
return cxs_save(session, path, **kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 625, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x000002914D5C5E80> -> <chimerax.basic_actions.tool.BasicActionsTool object at
0x000002916C8D5070> 'Basic Actions': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
ValueError: error processing: 'tools' -> -> 'Basic Actions': Error while
saving session data for 'tools' -> -> 'Basic Actions'
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
> select
1527 atoms, 1508 bonds, 208 residues, 2 models selected
> save "C:/Users/PC/Desktop/Hydrogel Chronic Wounds/review second
> round/compile/keratin.cxs"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 225, in take_snapshot
self.add_webview_state(data)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 260, in add_webview_state
event_loop.exec_()
AttributeError: 'QEventLoop' object has no attribute 'exec_'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 625, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x000002914D5C5E80> -> <chimerax.basic_actions.tool.BasicActionsTool object at
0x000002916C8D5070> 'Basic Actions': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
ValueError: error processing: 'tools' -> -> 'Basic Actions': Error while
saving session data for 'tools' -> -> 'Basic Actions'
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 225, in take_snapshot
self.add_webview_state(data)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 260, in add_webview_state
event_loop.exec_()
AttributeError: 'QEventLoop' object has no attribute 'exec_'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 116, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 51, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 75, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 90, in provider_save
saver_info.save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core_formats\\__init__.py", line 84, in save
return cxs_save(session, path, **kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 625, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x000002914D5C5E80> -> <chimerax.basic_actions.tool.BasicActionsTool object at
0x000002916C8D5070> 'Basic Actions': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
ValueError: error processing: 'tools' -> -> 'Basic Actions': Error while
saving session data for 'tools' -> -> 'Basic Actions'
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
> ui tool show "Basic Actions"
> save "C:/Users/PC/Desktop/Hydrogel Chronic Wounds/review second
> round/compile/keratin.cxs"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 225, in take_snapshot
self.add_webview_state(data)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 260, in add_webview_state
event_loop.exec_()
AttributeError: 'QEventLoop' object has no attribute 'exec_'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 625, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x000002914D5C5E80> -> <chimerax.basic_actions.tool.BasicActionsTool object at
0x000002916C8D5070> 'Basic Actions': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
ValueError: error processing: 'tools' -> -> 'Basic Actions': Error while
saving session data for 'tools' -> -> 'Basic Actions'
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 225, in take_snapshot
self.add_webview_state(data)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 260, in add_webview_state
event_loop.exec_()
AttributeError: 'QEventLoop' object has no attribute 'exec_'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 116, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 51, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 75, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 90, in provider_save
saver_info.save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core_formats\\__init__.py", line 84, in save
return cxs_save(session, path, **kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 625, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x000002914D5C5E80> -> <chimerax.basic_actions.tool.BasicActionsTool object at
0x000002916C8D5070> 'Basic Actions': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
ValueError: error processing: 'tools' -> -> 'Basic Actions': Error while
saving session data for 'tools' -> -> 'Basic Actions'
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
> ui tool show "Basic Actions"
> save "C:/Users/PC/Desktop/Hydrogel Chronic Wounds/review second
> round/compile/x.cxs"
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 225, in take_snapshot
self.add_webview_state(data)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 260, in add_webview_state
event_loop.exec_()
AttributeError: 'QEventLoop' object has no attribute 'exec_'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 625, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x000002914D5C5E80> -> <chimerax.basic_actions.tool.BasicActionsTool object at
0x000002916C8D5070> 'Basic Actions': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
ValueError: error processing: 'tools' -> -> 'Basic Actions': Error while
saving session data for 'tools' -> -> 'Basic Actions'
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 285, in process
data = sm.take_snapshot(obj, session, self.state_flags)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 225, in take_snapshot
self.add_webview_state(data)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\basic_actions\tool.py", line 260, in add_webview_state
event_loop.exec_()
AttributeError: 'QEventLoop' object has no attribute 'exec_'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 262, in discovery
self.processed[key] = self.process(obj, parents)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 290, in process
raise RuntimeError(msg) from e
RuntimeError: Error while saving session data for 'tools' ->
<chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 116, in <lambda>
lambda *args, ses=session: show_save_file_dialog(ses), tool_tip="Save output
file",
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 127, in show_save_file_dialog
_dlg.display(session, **kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\dialog.py", line 51, in display
run(session, cmd)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\run.py", line 38, in run
results = command.run(text, log=log, return_json=return_json)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 75, in cmd_save
Command(session, registry=registry).run(provider_cmd_text, log=log)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\commands\cli.py", line 2897, in run
result = ci.function(session, **kw_args)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\save_command\cmd.py", line 90, in provider_save
saver_info.save(session, path, **provider_kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core_formats\\__init__.py", line 84, in save
return cxs_save(session, path, **kw)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 896, in save
session.save(output, version=version, include_maps=include_maps)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 625, in save
mgr.discovery(self._state_containers)
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
ValueError: error processing: 'tools' -> <chimerax.core.tools.Tools object at
0x000002914D5C5E80> -> <chimerax.basic_actions.tool.BasicActionsTool object at
0x000002916C8D5070> 'Basic Actions': Error while saving session data for
'tools' -> <chimerax.core.tools.Tools object at 0x000002914D5C5E80> ->
<chimerax.basic_actions.tool.BasicActionsTool object at 0x000002916C8D5070>
'Basic Actions'
ValueError: error processing: 'tools' -> -> 'Basic Actions': Error while
saving session data for 'tools' -> -> 'Basic Actions'
File "C:\Program Files\ChimeraX 1.4\bin\lib\site-
packages\chimerax\core\session.py", line 266, in discovery
raise ValueError("error processing: %s: %s" % (_obj_stack(parents, obj), e))
See log for complete Python traceback.
OpenGL version: 3.3.0 NVIDIA 425.31
OpenGL renderer: GeForce GT 720M/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation
Python: 3.9.11
Locale: tr_TR.cp1254
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: windows
Manufacturer: ASUSTeK COMPUTER INC.
Model: X550CC
OS: Microsoft Windows 10 Home Single Language (Build 19044)
Memory: 8,469,925,888
MaxProcessMemory: 137,438,953,344
CPU: 4 Intel(R) Core(TM) i7-3537U CPU @ 2.00GHz
OSLanguage: tr-TR
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2022.5.18.1
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.18.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
comtypes: 1.1.10
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openvr: 1.16.802
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pywin32: 303
pyzmq: 23.1.0
qtconsole: 5.3.0
QtPy: 2.1.0
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
WMI: 1.5.1
Change History (2)
comment:1 by , 3 years ago
| Component: | Unassigned → Sessions |
|---|---|
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → assigned |
| Summary: | ChimeraX bug report submission → Basic Actions session save: 'QEventLoop' object has no attribute 'exec_' |
comment:2 by , 3 years ago
| Resolution: | → duplicate |
|---|---|
| Status: | assigned → closed |
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