The following bug report has been submitted:
Platform: macOS-10.14.6-x86_64-i386-64bit
ChimeraX Version: 1.4 (2022-06-03 23:39:42 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Current thread 0x000000011e63a5c0 (most recent call first):
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/cycler.py", line 389 in by_key
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/colors.py", line 180 in to_rgba
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/patches.py", line 361 in _set_facecolor
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/patches.py", line 373 in set_facecolor
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/patches.py", line 99 in __init__
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/spines.py", line 53 in __init__
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/spines.py", line 437 in linear_spine
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/axes/_base.py", line 1141 in
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/axes/_base.py", line 1141 in _gen_axes_spines
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/axes/_base.py", line 621 in __init__
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/_api/deprecation.py", line 456 in wrapper
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/axes/_subplots.py", line 34 in __init__
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/figure.py", line 772 in add_subplot
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/figure.py", line 1515 in gca
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/matplotlib/pyplot.py", line 2262 in gca
File "/Users/tarren/Library/Application Support/ChimeraX/1.4/site-packages/seaborn/categorical.py", line 2412 in boxenplot
File "/Users/tarren/Library/Application Support/ChimeraX/1.4/site-packages/chimerax/xmas/tool.py", line 1109 in create_distance_plot
File "/Users/tarren/Library/Application Support/ChimeraX/1.4/site-packages/chimerax/xmas/tool.py", line 1243 in get_names
File "/Users/tarren/Library/Application Support/ChimeraX/1.4/site-packages/chimerax/xmas/tool.py", line 1012 in
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 318 in event_loop
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 870 in init
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1021 in
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [79339]
Path: /Applications/ChimeraX-1.4.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.4.0 (1.4.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [79339]
User ID: 501
Date/Time: 2022-10-28 10:37:18.743 +1300
OS Version: Mac OS X 10.14.6 (18G9323)
Report Version: 12
Anonymous UUID: 36A3038F-997C-5506-BFC6-7DC6750245E2
Sleep/Wake UUID: B65E50B0-885D-49AC-B5C8-B9589E8573FC
Time Awake Since Boot: 2400000 seconds
Time Since Wake: 5800 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x000078c806022648
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0x78c806022648:
Stack 0000700015b93000-0000700015c15000 [ 520K] rw-/rwx SM=COW thread 20
-->
MALLOC_TINY 00007fe58cc00000-00007fe58d000000 [ 4096K] rw-/rwx SM=PRV
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 libsystem_kernel.dylib 0x00007fff6aafd2c2 __pthread_kill + 10
1 libsystem_pthread.dylib 0x00007fff6abb8bf1 pthread_kill + 284
2 libsystem_c.dylib 0x00007fff6aa1ad8a raise + 26
3 libsystem_platform.dylib 0x00007fff6abadb5d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 QtWidgets 0x000000011b7c7dc7 QGridLayout::~QGridLayout() + 39
6 QtWidgets.abi3.so 0x000000011b238438 non-virtual thunk to sipQGridLayout::~sipQGridLayout() + 56
7 QtWidgets 0x000000011b7a3960 QBoxLayout::~QBoxLayout() + 176
8 QtWidgets.abi3.so 0x000000011b2ad307 sipQVBoxLayout::~sipQVBoxLayout() + 55
9 QtWidgets 0x000000011b7d898a QWidget::~QWidget() + 634
10 QtWidgets.abi3.so 0x000000011b2caf17 sipQWidget::~sipQWidget() + 55
11 QtCore 0x00000001191db29f QObjectPrivate::deleteChildren() + 159
12 QtWidgets 0x000000011b7d8c10 QWidget::~QWidget() + 1280
13 QtWidgets.abi3.so 0x000000011b2caf17 sipQWidget::~sipQWidget() + 55
14 QtCore 0x00000001191db29f QObjectPrivate::deleteChildren() + 159
15 QtWidgets 0x000000011b7d8c10 QWidget::~QWidget() + 1280
16 QtWidgets.abi3.so 0x000000011b27e407 sipQDockWidget::~sipQDockWidget() + 55
17 sip.cpython-39-darwin.so 0x000000011b1162e7 forgetObject + 183
18 sip.cpython-39-darwin.so 0x000000011b115fd5 sipWrapper_dealloc + 37
19 org.python.python 0x000000010ebb9b3b subtype_dealloc + 1019
20 org.python.python 0x000000010eb988c2 dict_dealloc + 162
21 org.python.python 0x000000010ebcb97f subtype_clear + 239
22 org.python.python 0x000000010eca6c29 collect + 3193
23 org.python.python 0x000000010eca73c2 _PyObject_GC_Alloc + 338
24 org.python.python 0x000000010eca7435 _PyObject_GC_New + 21
25 org.python.python 0x000000010ebb05c5 set_iter + 21
26 org.python.python 0x000000010eb50689 PyObject_GetIter + 25
27 org.python.python 0x000000010ec3ba77 _PyEval_EvalFrameDefault + 23463
28 org.python.python 0x000000010eb66d28 function_code_fastcall + 104
29 org.python.python 0x000000010ec3ee0c call_function + 732
30 org.python.python 0x000000010ec3c27e _PyEval_EvalFrameDefault + 25518
31 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
32 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
33 org.python.python 0x000000010ec3ee0c call_function + 732
34 org.python.python 0x000000010ec3c2a2 _PyEval_EvalFrameDefault + 25554
35 org.python.python 0x000000010eb66d28 function_code_fastcall + 104
36 org.python.python 0x000000010ec3ee0c call_function + 732
37 org.python.python 0x000000010ec3c27e _PyEval_EvalFrameDefault + 25518
38 org.python.python 0x000000010eb66d28 function_code_fastcall + 104
39 org.python.python 0x000000010ec3ee0c call_function + 732
40 org.python.python 0x000000010ec3c27e _PyEval_EvalFrameDefault + 25518
41 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
42 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
43 org.python.python 0x000000010eb68db2 method_vectorcall + 274
44 org.python.python 0x000000010ec3c989 _PyEval_EvalFrameDefault + 27321
45 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
46 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
47 org.python.python 0x000000010eb66415 _PyObject_FastCallDictTstate + 293
48 org.python.python 0x000000010eb66f98 _PyObject_Call_Prepend + 152
49 org.python.python 0x000000010ebc0b05 slot_tp_init + 165
50 org.python.python 0x000000010ebbbfb9 type_call + 345
51 org.python.python 0x000000010eb66adc _PyObject_Call + 140
52 org.python.python 0x000000010ec3c989 _PyEval_EvalFrameDefault + 27321
53 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
54 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
55 org.python.python 0x000000010eb68d6a method_vectorcall + 202
56 org.python.python 0x000000010ec3ee0c call_function + 732
57 org.python.python 0x000000010ec3c2a2 _PyEval_EvalFrameDefault + 25554
58 org.python.python 0x000000010eb77ffa gen_send_ex + 234
59 org.python.python 0x000000010eb50740 PyIter_Next + 16
60 org.python.python 0x000000010eb9e718 mutablemapping_add_pairs + 392
61 org.python.python 0x000000010eb9e56d mutablemapping_update_arg + 605
62 org.python.python 0x000000010eb9e293 mutablemapping_update + 83
63 org.python.python 0x000000010eb9d49c odict_init + 92
64 org.python.python 0x000000010ebbbfb9 type_call + 345
65 org.python.python 0x000000010eb665b7 _PyObject_MakeTpCall + 359
66 org.python.python 0x000000010ec3ee9c call_function + 876
67 org.python.python 0x000000010ec3c34b _PyEval_EvalFrameDefault + 25723
68 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
69 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
70 org.python.python 0x000000010ec3ee0c call_function + 732
71 org.python.python 0x000000010ec3c27e _PyEval_EvalFrameDefault + 25518
72 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
73 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
74 org.python.python 0x000000010ec3c989 _PyEval_EvalFrameDefault + 27321
75 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
76 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
77 org.python.python 0x000000010ec3c989 _PyEval_EvalFrameDefault + 27321
78 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
79 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
80 org.python.python 0x000000010eb66415 _PyObject_FastCallDictTstate + 293
81 org.python.python 0x000000010eb66f98 _PyObject_Call_Prepend + 152
82 org.python.python 0x000000010ebc0b05 slot_tp_init + 165
83 org.python.python 0x000000010ebbbfb9 type_call + 345
84 org.python.python 0x000000010eb66adc _PyObject_Call + 140
85 org.python.python 0x000000010ec3c989 _PyEval_EvalFrameDefault + 27321
86 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
87 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
88 org.python.python 0x000000010eb68e59 method_vectorcall + 441
89 org.python.python 0x000000010ec3c989 _PyEval_EvalFrameDefault + 27321
90 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
91 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
92 org.python.python 0x000000010eb68db2 method_vectorcall + 274
93 org.python.python 0x000000010ec3c989 _PyEval_EvalFrameDefault + 27321
94 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
95 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
96 org.python.python 0x000000010ec3ee0c call_function + 732
97 org.python.python 0x000000010ec3c2a2 _PyEval_EvalFrameDefault + 25554
98 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
99 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
100 org.python.python 0x000000010ec3ee0c call_function + 732
101 org.python.python 0x000000010ec3c3e8 _PyEval_EvalFrameDefault + 25880
102 org.python.python 0x000000010eb66d28 function_code_fastcall + 104
103 org.python.python 0x000000010eb68d6a method_vectorcall + 202
104 org.python.python 0x000000010ec3ee0c call_function + 732
105 org.python.python 0x000000010ec3c34b _PyEval_EvalFrameDefault + 25723
106 org.python.python 0x000000010eb66d28 function_code_fastcall + 104
107 org.python.python 0x000000010ec3ee0c call_function + 732
108 org.python.python 0x000000010ec3c27e _PyEval_EvalFrameDefault + 25518
109 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
110 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
111 QtCore.abi3.so 0x0000000118ed1607 PyQtSlot::call(_object*, _object*) const + 39
112 QtCore.abi3.so 0x0000000118ed1516 PyQtSlot::invoke(void**, _object*, void*, bool) const + 358
113 QtCore.abi3.so 0x0000000118ed2445 PyQtSlotProxy::unislot(void**) + 85
114 QtCore.abi3.so 0x0000000118ed23ba PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58
115 QtCore 0x00000001191e39e7 0x119127000 + 772583
116 QtWidgets 0x000000011b8bfaaf 0x11b787000 + 1280687
117 QtWidgets 0x000000011b8bf94c 0x11b787000 + 1280332
118 QtWidgets 0x000000011b8c0a09 QAbstractButton::mouseReleaseEvent(QMouseEvent*) + 185
119 QtWidgets.abi3.so 0x000000011b299369 sipQPushButton::mouseReleaseEvent(QMouseEvent*) + 121
120 QtWidgets 0x000000011b7e9615 QWidget::event(QEvent*) + 389
121 QtWidgets.abi3.so 0x000000011b299c7f sipQPushButton::event(QEvent*) + 191
122 QtWidgets 0x000000011b795067 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
123 QtWidgets 0x000000011b7975a2 QApplication::notify(QObject*, QEvent*) + 6002
124 QtWidgets.abi3.so 0x000000011b2b7829 sipQApplication::notify(QObject*, QEvent*) + 233
125 QtCore 0x0000000119192dca QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
126 QtWidgets 0x000000011b795777 QApplicationPrivate::sendMouseEvent(QWidget*, QMouseEvent*, QWidget*, QWidget*, QWidget**, QPointer&, bool, bool) + 935
127 QtWidgets 0x000000011b80033e 0x11b787000 + 496446
128 QtWidgets 0x000000011b7ff195 0x11b787000 + 491925
129 QtWidgets 0x000000011b795067 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 247
130 QtWidgets 0x000000011b796023 QApplication::notify(QObject*, QEvent*) + 499
131 QtWidgets.abi3.so 0x000000011b2b7829 sipQApplication::notify(QObject*, QEvent*) + 233
132 QtCore 0x0000000119192dca QCoreApplication::notifyInternal2(QObject*, QEvent*) + 170
133 QtGui 0x000000011be39c7c QGuiApplicationPrivate::processMouseEvent(QWindowSystemInterfacePrivate::MouseEvent*) + 2332
134 QtGui 0x000000011be8541c QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 444
135 libqcocoa.dylib 0x000000011de9767b 0x11de7d000 + 108155
136 com.apple.CoreFoundation 0x00007fff3e8f039b __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
137 com.apple.CoreFoundation 0x00007fff3e8f0341 __CFRunLoopDoSource0 + 108
138 com.apple.CoreFoundation 0x00007fff3e8d3c0b __CFRunLoopDoSources0 + 195
139 com.apple.CoreFoundation 0x00007fff3e8d31d5 __CFRunLoopRun + 1189
140 com.apple.CoreFoundation 0x00007fff3e8d2ade CFRunLoopRunSpecific + 455
141 com.apple.HIToolbox 0x00007fff3db311ab RunCurrentEventLoopInMode + 292
142 com.apple.HIToolbox 0x00007fff3db30ded ReceiveNextEventCommon + 355
143 com.apple.HIToolbox 0x00007fff3db30c76 _BlockUntilNextEventMatchingListInModeWithFilter + 64
144 com.apple.AppKit 0x00007fff3bec8e89 _DPSNextEvent + 1135
145 com.apple.AppKit 0x00007fff3bec7b77 -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1361
146 com.apple.AppKit 0x00007fff3bec1c94 -[NSApplication run] + 699
147 libqcocoa.dylib 0x000000011de9648c 0x11de7d000 + 103564
148 QtCore 0x000000011919c516 QEventLoop::exec(QFlags) + 486
149 QtCore 0x00000001191933e5 QCoreApplication::exec() + 133
150 QtWidgets.abi3.so 0x000000011b3a490a meth_QApplication_exec(_object*, _object*) + 90
151 org.python.python 0x000000010eba571d cfunction_call + 125
152 org.python.python 0x000000010eb665b7 _PyObject_MakeTpCall + 359
153 org.python.python 0x000000010ec3ee9c call_function + 876
154 org.python.python 0x000000010ec3c2a2 _PyEval_EvalFrameDefault + 25554
155 org.python.python 0x000000010eb66d28 function_code_fastcall + 104
156 org.python.python 0x000000010eb68d6a method_vectorcall + 202
157 org.python.python 0x000000010ec3ee0c call_function + 732
158 org.python.python 0x000000010ec3c2a2 _PyEval_EvalFrameDefault + 25554
159 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
160 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
161 org.python.python 0x000000010ec3ee0c call_function + 732
162 org.python.python 0x000000010ec3c34b _PyEval_EvalFrameDefault + 25723
163 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
164 org.python.python 0x000000010ec35dab PyEval_EvalCode + 139
165 org.python.python 0x000000010ec32c12 builtin_exec + 626
166 org.python.python 0x000000010eba5023 cfunction_vectorcall_FASTCALL + 195
167 org.python.python 0x000000010ec3ee0c call_function + 732
168 org.python.python 0x000000010ec3c34b _PyEval_EvalFrameDefault + 25723
169 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
170 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
171 org.python.python 0x000000010ec3ee0c call_function + 732
172 org.python.python 0x000000010ec3c34b _PyEval_EvalFrameDefault + 25723
173 org.python.python 0x000000010ec3fb03 _PyEval_EvalCode + 2611
174 org.python.python 0x000000010eb66cb1 _PyFunction_Vectorcall + 289
175 org.python.python 0x000000010eca5870 pymain_run_module + 208
176 org.python.python 0x000000010eca4f87 Py_RunMain + 1431
177 org.python.python 0x000000010eca558f pymain_main + 223
178 org.python.python 0x000000010eca549b Py_Main + 43
179 edu.ucsf.cgl.ChimeraX 0x000000010eb1ddc8 main + 120
180 libdyld.dylib 0x00007fff6a9c23d5 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff6aafa866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6abb956e _pthread_cond_wait + 722
2 libopenblas64_.0.dylib 0x000000010ff8649f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 2:: ThreadPoolServiceThread
0 libsystem_kernel.dylib 0x00007fff6aaff0a2 kevent64 + 10
1 QtWebEngineCore 0x00000001225c55ca 0x11e663000 + 66463178
2 QtWebEngineCore 0x00000001225c54c7 0x11e663000 + 66462919
3 QtWebEngineCore 0x000000012254219c 0x11e663000 + 65925532
4 QtWebEngineCore 0x00000001224f9ff8 0x11e663000 + 65630200
5 QtWebEngineCore 0x0000000122564458 0x11e663000 + 66065496
6 QtWebEngineCore 0x000000012254b84d 0x11e663000 + 65964109
7 QtWebEngineCore 0x00000001225645ea 0x11e663000 + 66065898
8 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
9 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
11 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 3:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 QtWebEngineCore 0x00000001225939c6 0x11e663000 + 66259398
3 QtWebEngineCore 0x0000000122557d5f 0x11e663000 + 66014559
4 QtWebEngineCore 0x000000012255880c 0x11e663000 + 66017292
5 QtWebEngineCore 0x000000012255837d 0x11e663000 + 66016125
6 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
7 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 4:: Chrome_IOThread
0 libsystem_kernel.dylib 0x00007fff6aaff0a2 kevent64 + 10
1 QtWebEngineCore 0x00000001225c55ca 0x11e663000 + 66463178
2 QtWebEngineCore 0x00000001225c54c7 0x11e663000 + 66462919
3 QtWebEngineCore 0x000000012254219c 0x11e663000 + 65925532
4 QtWebEngineCore 0x00000001224f9ff8 0x11e663000 + 65630200
5 QtWebEngineCore 0x0000000122564458 0x11e663000 + 66065496
6 QtWebEngineCore 0x000000012148ae32 0x11e663000 + 48397874
7 QtWebEngineCore 0x00000001225645ea 0x11e663000 + 66065898
8 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
9 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
11 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 5:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 QtWebEngineCore 0x00000001225939c6 0x11e663000 + 66259398
3 QtWebEngineCore 0x000000012259378f 0x11e663000 + 66258831
4 QtWebEngineCore 0x00000001224c9089 0x11e663000 + 65429641
5 QtWebEngineCore 0x000000012254219c 0x11e663000 + 65925532
6 QtWebEngineCore 0x00000001224f9ff8 0x11e663000 + 65630200
7 QtWebEngineCore 0x0000000122564458 0x11e663000 + 66065496
8 QtWebEngineCore 0x00000001225645ea 0x11e663000 + 66065898
9 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
10 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 6:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 QtWebEngineCore 0x00000001225939c6 0x11e663000 + 66259398
3 QtWebEngineCore 0x0000000122557d5f 0x11e663000 + 66014559
4 QtWebEngineCore 0x000000012255880c 0x11e663000 + 66017292
5 QtWebEngineCore 0x000000012255840d 0x11e663000 + 66016269
6 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
7 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 7:: ThreadPoolForegroundWorker
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 QtWebEngineCore 0x00000001225939c6 0x11e663000 + 66259398
3 QtWebEngineCore 0x0000000122557d5f 0x11e663000 + 66014559
4 QtWebEngineCore 0x000000012255880c 0x11e663000 + 66017292
5 QtWebEngineCore 0x000000012255840d 0x11e663000 + 66016269
6 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
7 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 8:: CompositorTileWorker1
0 libsystem_kernel.dylib 0x00007fff6aafa866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6abb956e _pthread_cond_wait + 722
2 QtWebEngineCore 0x000000012258b8bb 0x11e663000 + 66226363
3 QtWebEngineCore 0x000000012465c55d 0x11e663000 + 100635997
4 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
5 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
6 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
7 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 9:: Chrome_InProcGpuThread
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 QtWebEngineCore 0x00000001225939c6 0x11e663000 + 66259398
3 QtWebEngineCore 0x00000001224c9028 0x11e663000 + 65429544
4 QtWebEngineCore 0x000000012254219c 0x11e663000 + 65925532
5 QtWebEngineCore 0x00000001224f9ff8 0x11e663000 + 65630200
6 QtWebEngineCore 0x0000000122564458 0x11e663000 + 66065496
7 QtWebEngineCore 0x00000001225645ea 0x11e663000 + 66065898
8 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
9 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
11 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 10:: Chrome_ChildIOThread
0 libsystem_kernel.dylib 0x00007fff6aaff0a2 kevent64 + 10
1 QtWebEngineCore 0x00000001225c55ca 0x11e663000 + 66463178
2 QtWebEngineCore 0x00000001225c54c7 0x11e663000 + 66462919
3 QtWebEngineCore 0x000000012254219c 0x11e663000 + 65925532
4 QtWebEngineCore 0x00000001224f9ff8 0x11e663000 + 65630200
5 QtWebEngineCore 0x0000000122564458 0x11e663000 + 66065496
6 QtWebEngineCore 0x00000001225645ea 0x11e663000 + 66065898
7 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
8 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 11:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 QtWebEngineCore 0x00000001225939c6 0x11e663000 + 66259398
3 QtWebEngineCore 0x000000012259378f 0x11e663000 + 66258831
4 QtWebEngineCore 0x00000001224c9089 0x11e663000 + 65429641
5 QtWebEngineCore 0x000000012254219c 0x11e663000 + 65925532
6 QtWebEngineCore 0x00000001224f9ff8 0x11e663000 + 65630200
7 QtWebEngineCore 0x0000000122564458 0x11e663000 + 66065496
8 QtWebEngineCore 0x00000001225645ea 0x11e663000 + 66065898
9 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
10 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 12:: VizCompositorThread
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 QtWebEngineCore 0x00000001225939c6 0x11e663000 + 66259398
3 QtWebEngineCore 0x00000001224c9028 0x11e663000 + 65429544
4 QtWebEngineCore 0x000000012254219c 0x11e663000 + 65925532
5 QtWebEngineCore 0x00000001224f9ff8 0x11e663000 + 65630200
6 QtWebEngineCore 0x0000000122564458 0x11e663000 + 66065496
7 QtWebEngineCore 0x00000001225645ea 0x11e663000 + 66065898
8 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
9 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
10 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
11 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 13:: NetworkService
0 libsystem_kernel.dylib 0x00007fff6aaff0a2 kevent64 + 10
1 QtWebEngineCore 0x00000001225c55ca 0x11e663000 + 66463178
2 QtWebEngineCore 0x00000001225c54c7 0x11e663000 + 66462919
3 QtWebEngineCore 0x000000012254219c 0x11e663000 + 65925532
4 QtWebEngineCore 0x00000001224f9ff8 0x11e663000 + 65630200
5 QtWebEngineCore 0x0000000122564458 0x11e663000 + 66065496
6 QtWebEngineCore 0x00000001225645ea 0x11e663000 + 66065898
7 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
8 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
9 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
10 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 14:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 QtWebEngineCore 0x00000001225939c6 0x11e663000 + 66259398
3 QtWebEngineCore 0x000000012259378f 0x11e663000 + 66258831
4 QtWebEngineCore 0x00000001224c9089 0x11e663000 + 65429641
5 QtWebEngineCore 0x000000012254219c 0x11e663000 + 65925532
6 QtWebEngineCore 0x00000001224f9ff8 0x11e663000 + 65630200
7 QtWebEngineCore 0x0000000122564458 0x11e663000 + 66065496
8 QtWebEngineCore 0x00000001225645ea 0x11e663000 + 66065898
9 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
10 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 15:: ThreadPoolSingleThreadForegroundBlocking0
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 QtWebEngineCore 0x00000001225939c6 0x11e663000 + 66259398
3 QtWebEngineCore 0x0000000122557d5f 0x11e663000 + 66014559
4 QtWebEngineCore 0x000000012255880c 0x11e663000 + 66017292
5 QtWebEngineCore 0x000000012255846d 0x11e663000 + 66016365
6 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
7 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 16:: NetworkConfigWatcher
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 QtWebEngineCore 0x00000001225939c6 0x11e663000 + 66259398
3 QtWebEngineCore 0x000000012259378f 0x11e663000 + 66258831
4 QtWebEngineCore 0x00000001224c9089 0x11e663000 + 65429641
5 QtWebEngineCore 0x000000012254219c 0x11e663000 + 65925532
6 QtWebEngineCore 0x00000001224f9ff8 0x11e663000 + 65630200
7 QtWebEngineCore 0x0000000122564458 0x11e663000 + 66065496
8 QtWebEngineCore 0x00000001225645ea 0x11e663000 + 66065898
9 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
10 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 17:: ThreadPoolBackgroundWorker
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 QtWebEngineCore 0x00000001225939c6 0x11e663000 + 66259398
3 QtWebEngineCore 0x0000000122557d5f 0x11e663000 + 66014559
4 QtWebEngineCore 0x000000012255880c 0x11e663000 + 66017292
5 QtWebEngineCore 0x000000012255837d 0x11e663000 + 66016125
6 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
7 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 18:: MemoryInfra
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 QtWebEngineCore 0x00000001225939c6 0x11e663000 + 66259398
3 QtWebEngineCore 0x000000012259378f 0x11e663000 + 66258831
4 QtWebEngineCore 0x00000001224c9089 0x11e663000 + 65429641
5 QtWebEngineCore 0x000000012254219c 0x11e663000 + 65925532
6 QtWebEngineCore 0x00000001224f9ff8 0x11e663000 + 65630200
7 QtWebEngineCore 0x0000000122564458 0x11e663000 + 66065496
8 QtWebEngineCore 0x00000001225645ea 0x11e663000 + 66065898
9 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
10 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
11 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
12 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 19:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 QtWebEngineCore 0x00000001225939c6 0x11e663000 + 66259398
3 QtWebEngineCore 0x0000000122557d5f 0x11e663000 + 66014559
4 QtWebEngineCore 0x000000012255853a 0x11e663000 + 66016570
5 QtWebEngineCore 0x00000001225583ad 0x11e663000 + 66016173
6 QtWebEngineCore 0x000000012258c4a8 0x11e663000 + 66229416
7 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 20:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff3e8d3e0e __CFRunLoopServiceMachPort + 328
3 com.apple.CoreFoundation 0x00007fff3e8d337c __CFRunLoopRun + 1612
4 com.apple.CoreFoundation 0x00007fff3e8d2ade CFRunLoopRunSpecific + 455
5 com.apple.AppKit 0x00007fff3bed0bae _NSEventThread + 175
6 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 21:
0 libsystem_kernel.dylib 0x00007fff6aafa866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6abb956e _pthread_cond_wait + 722
2 interpreter.cpython-39-darwin.so 0x000000013fa90fe3 th_worker(void*) + 115
3 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 22:
0 libsystem_kernel.dylib 0x00007fff6aafa866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6abb956e _pthread_cond_wait + 722
2 interpreter.cpython-39-darwin.so 0x000000013fa90fe3 th_worker(void*) + 115
3 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 23:
0 libsystem_kernel.dylib 0x00007fff6aafa866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6abb956e _pthread_cond_wait + 722
2 interpreter.cpython-39-darwin.so 0x000000013fa90fe3 th_worker(void*) + 115
3 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 24:
0 libsystem_kernel.dylib 0x00007fff6aafa866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6abb956e _pthread_cond_wait + 722
2 interpreter.cpython-39-darwin.so 0x000000013fa90fe3 th_worker(void*) + 115
3 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 25:
0 libsystem_kernel.dylib 0x00007fff6aafa866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6abb956e _pthread_cond_wait + 722
2 libopenblas.0.dylib 0x000000014285fa9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 26:: JavaScriptCore bmalloc scavenger
0 libsystem_kernel.dylib 0x00007fff6aafa866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff6abb956e _pthread_cond_wait + 722
2 libc++.1.dylib 0x00007fff67bf1a0a std::__1::condition_variable::wait(std::__1::unique_lock&) + 18
3 com.apple.JavaScriptCore 0x00007fff41dcdc42 void std::__1::condition_variable_any::wait >(std::__1::unique_lock&) + 82
4 com.apple.JavaScriptCore 0x00007fff41dd1d4b bmalloc::Scavenger::threadRunLoop() + 139
5 com.apple.JavaScriptCore 0x00007fff41dd1579 bmalloc::Scavenger::threadEntryPoint(bmalloc::Scavenger*) + 9
6 com.apple.JavaScriptCore 0x00007fff41dd2ee7 void* std::__1::__thread_proxy >, void (*)(bmalloc::Scavenger*), bmalloc::Scavenger*> >(void*) + 39
7 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
8 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
9 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 27:: com.apple.coreanimation.render-server
0 libsystem_kernel.dylib 0x00007fff6aaf721a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff6aaf7768 mach_msg + 60
2 com.apple.QuartzCore 0x00007fff493c6942 CA::Render::Server::server_thread(void*) + 865
3 com.apple.QuartzCore 0x00007fff493c65d6 thread_fun(void*) + 25
4 libsystem_pthread.dylib 0x00007fff6abb62eb _pthread_body + 126
5 libsystem_pthread.dylib 0x00007fff6abb9249 _pthread_start + 66
6 libsystem_pthread.dylib 0x00007fff6abb540d thread_start + 13
Thread 28:
0 libsystem_pthread.dylib 0x00007fff6abb53f0 start_wqthread + 0
Thread 29:
0 libsystem_pthread.dylib 0x00007fff6abb53f0 start_wqthread + 0
Thread 30:
0 libsystem_pthread.dylib 0x00007fff6abb53f0 start_wqthread + 0
Thread 31:
0 libsystem_pthread.dylib 0x00007fff6abb53f0 start_wqthread + 0
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000011e63a5c0 rcx: 0x000000010f03da48 rdx: 0x0000000000000000
rdi: 0x0000000000000307 rsi: 0x000000000000000b rbp: 0x000000010f03da80 rsp: 0x000000010f03da48
r8: 0x000000010f03df48 r9: 0x6ea46f26b868ba31 r10: 0x000000011e63a66c r11: 0x0000000000000287
r12: 0x0000000000000307 r13: 0x000000013e284040 r14: 0x000000000000000b r15: 0x000000000000002d
rip: 0x00007fff6aafd2c2 rfl: 0x0000000000000286 cr2: 0x000000010f03df48
Logical CPU: 0
Error Code: 0x02000148
Trap Number: 133
Binary Images:
0x10eb1d000 - 0x10eb1dff3 +edu.ucsf.cgl.ChimeraX (1.4.0 - 1.4.0.0) /Applications/ChimeraX-1.4.app/Contents/MacOS/ChimeraX
0x10eb27000 - 0x10ed8ffff +org.python.python (3.9.11, [c] 2001-2021 Python Software Foundation. - 3.9.11) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/Python
0x10f203000 - 0x10f205fff +_heapq.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_heapq.cpython-39-darwin.so
0x10f34f000 - 0x10f353ff7 +binascii.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/binascii.cpython-39-darwin.so
0x10f3a6000 - 0x10f3abfff +zlib.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/zlib.cpython-39-darwin.so
0x10f3f5000 - 0x10f3f7fff +_bz2.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bz2.cpython-39-darwin.so
0x10f401000 - 0x10f432fff +_lzma.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_lzma.cpython-39-darwin.so
0x10f444000 - 0x10f445fff +grp.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/grp.cpython-39-darwin.so
0x10f44f000 - 0x10f454ff7 +_struct.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_struct.cpython-39-darwin.so
0x10f463000 - 0x10f46bfff +math.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/math.cpython-39-darwin.so
0x10f479000 - 0x10f47aff7 +_bisect.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_bisect.cpython-39-darwin.so
0x10f484000 - 0x10f485fff +_random.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_random.cpython-39-darwin.so
0x10f4cf000 - 0x10f4d3fff +_sha512.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_sha512.cpython-39-darwin.so
0x10f5ae000 - 0x10f5aefff +_arrays.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/_arrays.cpython-39-darwin.so
0x10f5b5000 - 0x10f656ff7 +libarrays.dylib (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/arrays/lib/libarrays.dylib
0x10f73a000 - 0x10f73ffff +_json.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/lib-dynload/_json.cpython-39-darwin.so
0x10f749000 - 0x10fb10ff3 +_multiarray_umath.cpython-39-darwin.so (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/core/_multiarray_umath.cpython-39-darwin.so
0x10fc55000 - 0x1138deb47 +libopenblas64_.0.dylib (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libopenblas64_.0.dylib
0x113b9a000 - 0x113cb1ff7 +libgfortran.3.dylib (0) /Applications/ChimeraX-1.4.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/numpy/.dylibs/libgfortran.3.dylib
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0x7fff4b45f000 - 0x7fff4cde5ff7 com.apple.WebCore (14607 - 14607.3.9) /System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/WebCore.framework/Versions/A/WebCore
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0x7fff656e0000 - 0x7fff65898ffb com.apple.UIFoundation (1.0 - 551.5) /System/Library/PrivateFrameworks/UIFoundation.framework/Versions/A/UIFoundation
0x7fff658e6000 - 0x7fff658ecffb com.apple.URLFormatting (59 - 59.47) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff66514000 - 0x7fff665edfff com.apple.ViewBridge (407 - 407) /System/Library/PrivateFrameworks/ViewBridge.framework/Versions/A/ViewBridge
0x7fff66a30000 - 0x7fff66ca2ffb libAWDSupportFramework.dylib (2131) /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libAWDSupportFramework.dylib
0x7fff66ca3000 - 0x7fff66cb4fff libprotobuf-lite.dylib (2131) /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libprotobuf-lite.dylib
0x7fff66cb5000 - 0x7fff66d0ffff libprotobuf.dylib (2131) /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libprotobuf.dylib
0x7fff66d10000 - 0x7fff66d51ff7 com.apple.awd (1.0 - 930.11) /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/WirelessDiagnostics
0x7fff66dc5000 - 0x7fff66dc8fff com.apple.dt.XCTTargetBootstrap (1.0 - 14490.66) /System/Library/PrivateFrameworks/XCTTargetBootstrap.framework/Versions/A/XCTTargetBootstrap
0x7fff671c9000 - 0x7fff671cbffb com.apple.loginsupport (1.0 - 1) /System/Library/PrivateFrameworks/login.framework/Versions/A/Frameworks/loginsupport.framework/Versions/A/loginsupport
0x7fff671cc000 - 0x7fff671e1fff com.apple.login (3.0 - 3.0) /System/Library/PrivateFrameworks/login.framework/Versions/A/login
0x7fff67218000 - 0x7fff67249ffb com.apple.contacts.vCard (1.0 - ???) /System/Library/PrivateFrameworks/vCard.framework/Versions/A/vCard
0x7fff67405000 - 0x7fff67419ffb libAccessibility.dylib (2402.95) /usr/lib/libAccessibility.dylib
0x7fff67495000 - 0x7fff674c9fff libCRFSuite.dylib (41.15.4) /usr/lib/libCRFSuite.dylib
0x7fff674cc000 - 0x7fff674d6ff7 libChineseTokenizer.dylib (28.15.3) /usr/lib/libChineseTokenizer.dylib
0x7fff674d7000 - 0x7fff67560fff libCoreStorage.dylib (546.50.2) /usr/lib/libCoreStorage.dylib
0x7fff67564000 - 0x7fff67565ffb libDiagnosticMessagesClient.dylib (107) /usr/lib/libDiagnosticMessagesClient.dylib
0x7fff6759c000 - 0x7fff677f3ff3 libFosl_dynamic.dylib (18.3.4) /usr/lib/libFosl_dynamic.dylib
0x7fff67813000 - 0x7fff6781afff libMatch.1.dylib (31.200.1) /usr/lib/libMatch.1.dylib
0x7fff67844000 - 0x7fff67863fff libMobileGestalt.dylib (645.270.1) /usr/lib/libMobileGestalt.dylib
0x7fff67864000 - 0x7fff67864fff libOpenScriptingUtil.dylib (179.1) /usr/lib/libOpenScriptingUtil.dylib
0x7fff679a4000 - 0x7fff679a5ffb libSystem.B.dylib (1252.250.1) /usr/lib/libSystem.B.dylib
0x7fff679a6000 - 0x7fff67a20ff7 libTelephonyUtilDynamic.dylib (3705) /usr/lib/libTelephonyUtilDynamic.dylib
0x7fff67a21000 - 0x7fff67a22fff libThaiTokenizer.dylib (2.15.1) /usr/lib/libThaiTokenizer.dylib
0x7fff67a34000 - 0x7fff67a4affb libapple_nghttp2.dylib (1.24.1) /usr/lib/libapple_nghttp2.dylib
0x7fff67a4b000 - 0x7fff67a74ffb libarchive.2.dylib (54.250.1) /usr/lib/libarchive.2.dylib
0x7fff67a75000 - 0x7fff67af4fff libate.dylib (1.13.8) /usr/lib/libate.dylib
0x7fff67af8000 - 0x7fff67af8ff3 libauto.dylib (187) /usr/lib/libauto.dylib
0x7fff67bca000 - 0x7fff67bdaffb libbsm.0.dylib (39.200.18) /usr/lib/libbsm.0.dylib
0x7fff67bdb000 - 0x7fff67be8fff libbz2.1.0.dylib (38.200.3) /usr/lib/libbz2.1.0.dylib
0x7fff67be9000 - 0x7fff67c3cff7 libc++.1.dylib (400.9.4) /usr/lib/libc++.1.dylib
0x7fff67c3d000 - 0x7fff67c52ff7 libc++abi.dylib (400.17) /usr/lib/libc++abi.dylib
0x7fff67c53000 - 0x7fff67c53ff3 libcharset.1.dylib (51.200.6) /usr/lib/libcharset.1.dylib
0x7fff67c54000 - 0x7fff67c64ffb libcmph.dylib (6.15.1) /usr/lib/libcmph.dylib
0x7fff67c65000 - 0x7fff67c7dffb libcompression.dylib (52.250.2) /usr/lib/libcompression.dylib
0x7fff67ef2000 - 0x7fff67f08fff libcoretls.dylib (155.220.1) /usr/lib/libcoretls.dylib
0x7fff67f09000 - 0x7fff67f0aff3 libcoretls_cfhelpers.dylib (155.220.1) /usr/lib/libcoretls_cfhelpers.dylib
0x7fff680a8000 - 0x7fff681a0ff7 libcrypto.35.dylib (22.260.1) /usr/lib/libcrypto.35.dylib
0x7fff682a2000 - 0x7fff683a2fcb libcrypto.42.dylib (22.260.1) /usr/lib/libcrypto.42.dylib
0x7fff683a3000 - 0x7fff683aeff7 libcsfde.dylib (546.50.2) /usr/lib/libcsfde.dylib
0x7fff683b6000 - 0x7fff6840cff3 libcups.2.dylib (462.16) /usr/lib/libcups.2.dylib
0x7fff68435000 - 0x7fff68489ff7 libcurl.4.dylib (105.200.6) /usr/lib/libcurl.4.dylib
0x7fff68541000 - 0x7fff68541fff libenergytrace.dylib (17.200.1) /usr/lib/libenergytrace.dylib
0x7fff68542000 - 0x7fff6855bffb libexpat.1.dylib (16.1.2) /usr/lib/libexpat.1.dylib
0x7fff68569000 - 0x7fff6856afff libffi.dylib (18.1) /usr/lib/libffi.dylib
0x7fff68573000 - 0x7fff68578ff7 libgermantok.dylib (17.15.2) /usr/lib/libgermantok.dylib
0x7fff68579000 - 0x7fff6857eff7 libheimdal-asn1.dylib (520.270.8) /usr/lib/libheimdal-asn1.dylib
0x7fff685a9000 - 0x7fff68699fff libiconv.2.dylib (51.200.6) /usr/lib/libiconv.2.dylib
0x7fff6869a000 - 0x7fff688fbffb libicucore.A.dylib (62141.0.1) /usr/lib/libicucore.A.dylib
0x7fff68948000 - 0x7fff68949fff liblangid.dylib (128.15.1) /usr/lib/liblangid.dylib
0x7fff6894a000 - 0x7fff68962ff3 liblzma.5.dylib (10.200.3) /usr/lib/liblzma.5.dylib
0x7fff6897a000 - 0x7fff68a1eff7 libmecab.1.0.0.dylib (779.24.1) /usr/lib/libmecab.1.0.0.dylib
0x7fff68a1f000 - 0x7fff68c23fff libmecabra.dylib (779.24.1) /usr/lib/libmecabra.dylib
0x7fff68dfb000 - 0x7fff6914cff7 libnetwork.dylib (1229.250.15) /usr/lib/libnetwork.dylib
0x7fff691de000 - 0x7fff69963fdf libobjc.A.dylib (756.2) /usr/lib/libobjc.A.dylib
0x7fff69964000 - 0x7fff69965fff libodfde.dylib (24.50.1) /usr/lib/libodfde.dylib
0x7fff69975000 - 0x7fff69979ffb libpam.2.dylib (22.200.1) /usr/lib/libpam.2.dylib
0x7fff6997c000 - 0x7fff699b1fff libpcap.A.dylib (79.250.4) /usr/lib/libpcap.A.dylib
0x7fff69a07000 - 0x7fff69a0afff libpmenergy.dylib (194.267.1) /usr/lib/libpmenergy.dylib
0x7fff69a0b000 - 0x7fff69a0dfff libpmsample.dylib (194.267.1) /usr/lib/libpmsample.dylib
0x7fff69aca000 - 0x7fff69ae2ffb libresolv.9.dylib (65.200.3) /usr/lib/libresolv.9.dylib
0x7fff69ae4000 - 0x7fff69b1fff3 libsandbox.1.dylib (851.270.6) /usr/lib/libsandbox.1.dylib
0x7fff69b20000 - 0x7fff69b32ff7 libsasl2.2.dylib (211.1) /usr/lib/libsasl2.2.dylib
0x7fff69b33000 - 0x7fff69b34ff7 libspindump.dylib (267.3) /usr/lib/libspindump.dylib
0x7fff69b35000 - 0x7fff69d12fff libsqlite3.dylib (274.26) /usr/lib/libsqlite3.dylib
0x7fff69dd6000 - 0x7fff69e05fff libssl.44.dylib (22.260.1) /usr/lib/libssl.44.dylib
0x7fff69f2b000 - 0x7fff69f2eff7 libutil.dylib (51.200.4) /usr/lib/libutil.dylib
0x7fff69f2f000 - 0x7fff69f3cfff libxar.1.dylib (417.1) /usr/lib/libxar.1.dylib
0x7fff69f41000 - 0x7fff6a024fff libxml2.2.dylib (32.20) /usr/lib/libxml2.2.dylib
0x7fff6a025000 - 0x7fff6a04dff3 libxslt.1.dylib (16.7.3) /usr/lib/libxslt.1.dylib
0x7fff6a04e000 - 0x7fff6a060ff7 libz.1.dylib (70.200.4) /usr/lib/libz.1.dylib
0x7fff6a844000 - 0x7fff6a848ff3 libcache.dylib (81) /usr/lib/system/libcache.dylib
0x7fff6a849000 - 0x7fff6a853ff3 libcommonCrypto.dylib (60118.250.2) /usr/lib/system/libcommonCrypto.dylib
0x7fff6a854000 - 0x7fff6a85bff7 libcompiler_rt.dylib (63.4) /usr/lib/system/libcompiler_rt.dylib
0x7fff6a85c000 - 0x7fff6a865ff7 libcopyfile.dylib (146.250.1) /usr/lib/system/libcopyfile.dylib
0x7fff6a866000 - 0x7fff6a8ebfff libcorecrypto.dylib (602.260.3) /usr/lib/system/libcorecrypto.dylib
0x7fff6a972000 - 0x7fff6a9abff7 libdispatch.dylib (1008.270.1) /usr/lib/system/libdispatch.dylib
0x7fff6a9ac000 - 0x7fff6a9d8ff7 libdyld.dylib (655.1.1) /usr/lib/system/libdyld.dylib
0x7fff6a9d9000 - 0x7fff6a9d9ffb libkeymgr.dylib (30) /usr/lib/system/libkeymgr.dylib
0x7fff6a9da000 - 0x7fff6a9e6ff3 libkxld.dylib (4903.278.70) /usr/lib/system/libkxld.dylib
0x7fff6a9e7000 - 0x7fff6a9e7ff7 liblaunch.dylib (1336.261.7) /usr/lib/system/liblaunch.dylib
0x7fff6a9e8000 - 0x7fff6a9edfff libmacho.dylib (927.0.3) /usr/lib/system/libmacho.dylib
0x7fff6a9ee000 - 0x7fff6a9f0ff7 libquarantine.dylib (86.270.1) /usr/lib/system/libquarantine.dylib
0x7fff6a9f1000 - 0x7fff6a9f2ff7 libremovefile.dylib (45.200.2) /usr/lib/system/libremovefile.dylib
0x7fff6a9f3000 - 0x7fff6aa0aff3 libsystem_asl.dylib (356.200.4) /usr/lib/system/libsystem_asl.dylib
0x7fff6aa0b000 - 0x7fff6aa0bff7 libsystem_blocks.dylib (73) /usr/lib/system/libsystem_blocks.dylib
0x7fff6aa0c000 - 0x7fff6aa93fff libsystem_c.dylib (1272.250.3) /usr/lib/system/libsystem_c.dylib
0x7fff6aa94000 - 0x7fff6aa97ffb libsystem_configuration.dylib (963.270.4) /usr/lib/system/libsystem_configuration.dylib
0x7fff6aa98000 - 0x7fff6aa9bff7 libsystem_coreservices.dylib (66.1) /usr/lib/system/libsystem_coreservices.dylib
0x7fff6aa9c000 - 0x7fff6aaa2fff libsystem_darwin.dylib (1272.250.3) /usr/lib/system/libsystem_darwin.dylib
0x7fff6aaa3000 - 0x7fff6aaa9ffb libsystem_dnssd.dylib (878.270.3) /usr/lib/system/libsystem_dnssd.dylib
0x7fff6aaaa000 - 0x7fff6aaf5ffb libsystem_info.dylib (517.200.9) /usr/lib/system/libsystem_info.dylib
0x7fff6aaf6000 - 0x7fff6ab1eff7 libsystem_kernel.dylib (4903.278.70) /usr/lib/system/libsystem_kernel.dylib
0x7fff6ab1f000 - 0x7fff6ab6aff7 libsystem_m.dylib (3158.200.7) /usr/lib/system/libsystem_m.dylib
0x7fff6ab6b000 - 0x7fff6ab95fff libsystem_malloc.dylib (166.270.1) /usr/lib/system/libsystem_malloc.dylib
0x7fff6ab96000 - 0x7fff6aba0ff7 libsystem_networkextension.dylib (767.250.2) /usr/lib/system/libsystem_networkextension.dylib
0x7fff6aba1000 - 0x7fff6aba8fff libsystem_notify.dylib (172.200.21) /usr/lib/system/libsystem_notify.dylib
0x7fff6aba9000 - 0x7fff6abb2fef libsystem_platform.dylib (177.270.1) /usr/lib/system/libsystem_platform.dylib
0x7fff6abb3000 - 0x7fff6abbdff7 libsystem_pthread.dylib (330.250.2) /usr/lib/system/libsystem_pthread.dylib
0x7fff6abbe000 - 0x7fff6abc1ff7 libsystem_sandbox.dylib (851.270.6) /usr/lib/system/libsystem_sandbox.dylib
0x7fff6abc2000 - 0x7fff6abc4ff3 libsystem_secinit.dylib (30.260.2) /usr/lib/system/libsystem_secinit.dylib
0x7fff6abc5000 - 0x7fff6abccff3 libsystem_symptoms.dylib (820.267.2) /usr/lib/system/libsystem_symptoms.dylib
0x7fff6abcd000 - 0x7fff6abe2ff7 libsystem_trace.dylib (906.260.3) /usr/lib/system/libsystem_trace.dylib
0x7fff6abe4000 - 0x7fff6abe9ffb libunwind.dylib (35.4) /usr/lib/system/libunwind.dylib
0x7fff6abea000 - 0x7fff6ac19fff libxpc.dylib (1336.261.7) /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 1
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 972535
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=954.8M resident=0K(0%) swapped_out_or_unallocated=954.8M(100%)
Writable regions: Total=2.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.1G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 896K 6
Activity Tracing 256K 1
CG backing stores 336K 2
CG image 84K 15
CoreAnimation 592K 37
CoreGraphics 8K 1
CoreImage 124K 26
CoreUI image data 1332K 28
CoreUI image file 488K 7
Foundation 4K 1
JS JIT generated code 1.0G 3
Kernel Alloc Once 8K 1
MALLOC 553.6M 291
MALLOC guard page 32K 7
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 256.0M 1 reserved VM address space (unallocated)
Mach message 16K 3
Memory Tag 242 12K 1
OpenGL GLSL 384K 4
SQLite page cache 64K 1
STACK GUARD 124K 31
Stack 158.7M 32
Stack Guard 56.0M 1
VM_ALLOCATE 83.9M 81
VM_ALLOCATE (reserved) 32.0M 1 reserved VM address space (unallocated)
WebKit Malloc 4216K 10
__DATA 66.2M 701
__DATA_CONST 48K 3
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 271.3M 370
__TEXT 684.2M 665
__UNICODE 564K 1
mapped file 91.8M 154
shared memory 3156K 22
=========== ======= =======
TOTAL 3.2G 2511
TOTAL, minus reserved VM space 2.9G 2511
===== Log before crash start =====
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/tarren/Downloads/187089-COP1MBPRingCoilDimer/cluster1_1.pdb
Summary of feedback from opening
/Users/tarren/Downloads/187089-COP1MBPRingCoilDimer/cluster1_1.pdb
---
warnings | Ignored bad PDB record found on line 1
REMARK FILENAME="complex_165w.pdb0"
Ignored bad PDB record found on line 2
REMARK ===============================================================
Ignored bad PDB record found on line 3
REMARK HADDOCK run for complex
Ignored bad PDB record found on line 4
REMARK initial structure: complex_165.pdb
Ignored bad PDB record found on line 5
REMARK ===============================================================
29 messages similar to the above omitted
Chain information for cluster1_1.pdb #1
---
Chain | Description
A B | No description available
> ui tool show XMAS
Peptide pair mapping of pLink evidence file: /Volumes/TL FOR BIOC/Crosslinking
Stuff/COP1
Dimer/Plink/22051_xlink_trial/reports/22051_MBP_COP1_2022.10.21.filtered_cross-
linked_peptides.csv
Unique peptide pairs: 2 out of 2
Unique peptide pairs with pseudobonds: 2
Pseudobonds are stored in /Volumes/TL FOR BIOC/Crosslinking Stuff/COP1
Dimer/Plink/22051_xlink_trial/reports/22051_MBP_COP1_2022.10.21.filtered_cross-
linked_peptides_1.pb
Mapping information is stored in /Volumes/TL FOR BIOC/Crosslinking Stuff/COP1
Dimer/Plink/22051_xlink_trial/reports/22051_MBP_COP1_2022.10.21.filtered_cross-
linked_peptides_1.tsv
> ui mousemode right "rotate selected models"
> ui mousemode right "translate selected atoms"
> ui mousemode right select
> select /B:368
9 atoms, 8 bonds, 1 residue, 1 model selected
> select clear
Drag select of 459 residues, 1 pseudobonds
> select clear
Please select pseudobonds
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.4 (2022-06-03)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-12.10.31
OpenGL renderer: Intel Iris OpenGL Engine
OpenGL vendor: Intel Inc.
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.0, Qt 6.3.0
Qt runtime version: 6.3.0
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: Mac mini
Model Identifier: Macmini7,1
Processor Name: Intel Core i5
Processor Speed: 2.6 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 3 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
Boot ROM Version: 431.140.6.0.0
SMC Version (system): 2.24f32
Software:
System Software Overview:
System Version: macOS 10.14.6 (18G9323)
Kernel Version: Darwin 18.7.0
Time since boot: 72 days 19:39
Graphics/Displays:
Intel Iris:
Chipset Model: Intel Iris
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x0a2e
Revision ID: 0x0009
Metal: Supported, feature set macOS GPUFamily1 v4
Displays:
ASUS VC239:
Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
UI Looks like: 1920 x 1080 @ 60 Hz
Framebuffer Depth: 24-Bit Color (ARGB8888)
Display Serial Number: G2LMTJ003558
Main Display: Yes
Mirror: Off
Online: Yes
Rotation: Supported
Automatically Adjust Brightness: No
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
Babel: 2.10.1
backcall: 0.2.0
blockdiag: 3.0.0
certifi: 2021.10.8
cftime: 1.6.0
charset-normalizer: 2.0.12
ChimeraX-AddCharge: 1.2.3
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.4.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.2
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.39.1
ChimeraX-AtomicLibrary: 7.0
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.1
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.1
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.7
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.1
ChimeraX-CommandLine: 1.2.3
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.4
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.1.5
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.6
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.7
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.5.5
ChimeraX-ModelPanel: 1.3.2
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.9
ChimeraX-PDB: 2.6.6
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.8
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.0.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.1
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.18.3
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.1.2
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.1.0
ChimeraX-XMAS: 1.1.2
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.26
debugpy: 1.6.0
decorator: 5.1.1
docutils: 0.17.1
entrypoints: 0.4
et-xmlfile: 1.1.0
filelock: 3.4.2
fonttools: 4.33.3
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.27
imagecodecs: 2021.11.20
imagesize: 1.3.0
ipykernel: 6.6.1
ipython: 7.31.1
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.0.3
jupyter-client: 7.1.0
jupyter-core: 4.10.0
kiwisolver: 1.4.2
line-profiler: 3.4.0
lxml: 4.7.1
lz4: 3.1.10
MarkupSafe: 2.1.1
matplotlib: 3.5.1
matplotlib-inline: 0.1.3
msgpack: 1.0.3
nest-asyncio: 1.5.5
netCDF4: 1.5.8
networkx: 2.6.3
numexpr: 2.8.1
numpy: 1.22.1
openpyxl: 3.0.10
openvr: 1.16.802
packaging: 21.0
pandas: 1.5.0
ParmEd: 3.4.3
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.0.1
pip: 21.3.1
pkginfo: 1.8.2
prompt-toolkit: 3.0.29
psutil: 5.9.0
ptyprocess: 0.7.0
pycollada: 0.7.2
pydicom: 2.2.2
Pygments: 2.11.2
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.0
PyQt6-Qt6: 6.3.0
PyQt6-sip: 13.3.1
PyQt6-WebEngine-commercial: 6.3.0
PyQt6-WebEngine-Qt6: 6.3.0
python-dateutil: 2.8.2
pytz: 2022.1
pyzmq: 23.1.0
qtconsole: 5.3.0
QtPy: 2.1.0
QtRangeSlider: 0.1.5
RandomWords: 0.3.0
requests: 2.27.1
scipy: 1.7.3
seaborn: 0.12.0
setuptools: 59.8.0
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.3.2
sphinx-autodoc-typehints: 1.15.2
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-community: 1.0.0
tables: 3.7.0
tifffile: 2021.11.2
tinyarray: 1.2.4
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.9
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.1
wheel-filename: 1.3.0
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
In the XMAS plugin. We have seen several reports of this. Must be something about about the use of PyQt possibly resulting in a Qt widget being deleted twice.