The following bug report has been submitted:
Platform: macOS-12.5.1-arm64-arm-64bit
ChimeraX Version: 1.5.dev202210070217 (2022-10-07 02:17:25 UTC)
Description
(Describe the actions that caused this problem to occur here)
Log:
UCSF ChimeraX version: 1.5.dev202210070217 (2022-10-07)
© 2016-2022 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open "/Users/yesenia.acevedo/Documents/Ciencias
> Medicas/Investigacion/Proposal/Drafts/6b0n_BG505_NFL_G.pdb"
Chain information for 6b0n_BG505_NFL_G.pdb #1
---
Chain | Description
G | No description available
> rainbow
[Repeated 1 time(s)]
> undo
[Repeated 1 time(s)]Alignment identifier is 1/G
Destroying pre-existing alignment with identifier 1/G
Alignment identifier is 1/G
> select /G:512
5 atoms, 4 bonds, 1 residue, 1 model selected
> select /G:512-664
1184 atoms, 1205 bonds, 153 residues, 1 model selected
> view sel
> color sel bychain
> color #1 #d133d7ff
> color #1 #d77eadff
> color #1 #aab8d5ff
> color #1 #ccdcffff
> color #1 #e8edffff
> color #1 #a4c3ffff
> color #1 #d9fff4ff
> color #1 #e2ffe6ff
> color #1 #79897cff
> color #1 #b1c8b4ff
> color #1 #b0c7b3ff
> color #1 #b0b5c7ff
> color #1 #9ab7c7ff
Destroying pre-existing alignment with identifier 1/G
Alignment identifier is 1/G
> color sel magenta
> color #1 #955cd0ff
> color #1 #d0c09fff
> color #1 #d0bb9eff
> color sel magenta
> hide target m
[Repeated 1 time(s)]
> show #1 models
Destroying pre-existing alignment with identifier 1/G
Alignment identifier is 1/G
> open "/Users/yesenia.acevedo/Documents/Ciencias
> Medicas/Investigacion/Proposal/Drafts/1-BG505-CP-L6.pdb"
Chain information for 1-BG505-CP-L6.pdb #2
---
Chain | Description
A | No description available
> hide #1 models
> ui mousemode right select
> view sel
> view
> show #1 models
> hide #1 models
> color #2 #e6eca8ff
> color #2 #ece4aeff
> color #2 #ece2afff
> color #2 #ece7aaff
> color #2 #ece4acff
Destroying pre-existing alignment with identifier 1/G
Alignment identifier is 1/G
Destroying pre-existing alignment with identifier 1/G
Alignment identifier is 1/G
> hide #2 models
> show #2 models
> show #1 models
> hide #1 models
> select add #2
11420 atoms, 11550 bonds, 808 residues, 2 models selected
> select add #1
14990 atoms, 15191 bonds, 1265 residues, 2 models selected
> select subtract #1
10236 atoms, 10345 bonds, 655 residues, 1 model selected
> select add #1
14990 atoms, 15191 bonds, 1265 residues, 2 models selected
> select subtract #1
10236 atoms, 10345 bonds, 655 residues, 1 model selected
Alignment identifier is 2/A
> select #2/A:180
19 atoms, 18 bonds, 1 residue, 1 model selected
> select #2/A:180-655
7401 atoms, 7477 bonds, 476 residues, 1 model selected
> select #2/A:180
19 atoms, 18 bonds, 1 residue, 1 model selected
> select #2/A:180
19 atoms, 18 bonds, 1 residue, 1 model selected
> select #2/A:1
13 atoms, 12 bonds, 1 residue, 1 model selected
> select #2/A:1-179
2835 atoms, 2867 bonds, 179 residues, 1 model selected
> color sel magenta
> select add #2
10236 atoms, 10345 bonds, 655 residues, 1 model selected
> hide #2 models
> show #2 models
> select subtract #2
Nothing selected
> show #1 models
> select add #1
4754 atoms, 4846 bonds, 610 residues, 1 model selected
Alignment identifier is 1/G
> select #1/G:517
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #1/G:517-664
1156 atoms, 1177 bonds, 148 residues, 1 model selected
> select #1/G:512
5 atoms, 4 bonds, 1 residue, 1 model selected
> select #1/G:512-664
1184 atoms, 1205 bonds, 153 residues, 1 model selected
> color sel cornflower blue
> select #1/G:511
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1/G:33-511
3561 atoms, 3631 bonds, 456 residues, 1 model selected
> select #1/G:32
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/G:32-511
3570 atoms, 3640 bonds, 457 residues, 1 model selected
> color #2 #9ee5ecff
> color #2 #aac4ecff
> color #2 #bcd3ecff
> color #2 #bfd9ecff
> select add #1
4754 atoms, 4846 bonds, 610 residues, 1 model selected
> select subtract #1
Nothing selected
> undo
[Repeated 4 time(s)]
> select add #1
4754 atoms, 4846 bonds, 610 residues, 1 model selected
> select subtract #1
Nothing selected
> select add #1
4754 atoms, 4846 bonds, 610 residues, 1 model selected
> select #1/G:32
9 atoms, 8 bonds, 1 residue, 1 model selected
> select #1/G:32-466
3237 atoms, 3300 bonds, 413 residues, 1 model selected
> select #1/G:511
6 atoms, 5 bonds, 1 residue, 1 model selected
> select #1/G:32-511
3570 atoms, 3640 bonds, 457 residues, 1 model selected
> color sel light gray
> select add #1
4754 atoms, 4846 bonds, 610 residues, 1 model selected
> select subtract #1
Nothing selected
> select add #2
10236 atoms, 10345 bonds, 655 residues, 1 model selected
> select #2/A:178-179
21 atoms, 20 bonds, 2 residues, 1 model selected
> select #2/A:1-179
2835 atoms, 2867 bonds, 179 residues, 1 model selected
> color sel magenta
> color #2 #d0e3eeff
> color #2 #eee2afff
> select #2/A:179
10 atoms, 9 bonds, 1 residue, 1 model selected
> select #2/A:1-179
2835 atoms, 2867 bonds, 179 residues, 1 model selected
> color sel magenta
> select add #2
10236 atoms, 10345 bonds, 655 residues, 1 model selected
> select subtract #2
Nothing selected
> cd "/Users/yesenia.acevedo/Documents/Ciencias
> Medicas/Investigacion/Proposal/Drafts/Chimera"
Current working directory is: /Users/yesenia.acevedo/Documents/Ciencias
Medicas/Investigacion/Proposal/Drafts/Chimera
> select add #1
4754 atoms, 4846 bonds, 610 residues, 1 model selected
> select add #2
14990 atoms, 15191 bonds, 1265 residues, 2 models selected
> ui tool show "Show Sequence Viewer"
> sequence chain #1/G
Destroying pre-existing alignment with identifier 1/G
Alignment identifier is 1/G
> sequence chain #2/A
Destroying pre-existing alignment with identifier 2/A
Alignment identifier is 2/A
> ui tool show "Modeller Comparative"
[Repeated 1 time(s)]
> modeller comparative 1/G:1 2/A:1 numModels 5 fast false multichain true
> hetPreserve false hydrogens false waterPreserve false
No Modeller license key provided. Get a license key by registering at the
Modeller web site.
> modeller comparative 1/G:1 2/A:1 numModels 5 fast false multichain true
> hetPreserve false hydrogens false waterPreserve false
Webservices job id: XY4GMDPF89C0Q8H2
> ui tool show "Show Sequence Viewer"
> sequence chain #1/G
Destroying pre-existing alignment with identifier 1/G
Alignment identifier is 1/G
> sequence chain #2/A
Destroying pre-existing alignment with identifier 2/A
Alignment identifier is 2/A
> toolshed show
Downloading bundle MolecularDynamicsViewer-1.4-py3-none-any.whl
Successfully installed MolecularDynamicsViewer-1.4
Installed MolecularDynamicsViewer (1.4)
> toolshed show
Modeller job (ID XY4GMDPF89C0Q8H2) finished
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6b0n_BG505_NFL_G.pdb, chain G (#1) with target, chain G (#),
sequence alignment score = 3069.1
RMSD between 579 pruned atom pairs is 0.459 angstroms; (across all 610 pairs:
1.576)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6b0n_BG505_NFL_G.pdb, chain G (#1) with target, chain G (#),
sequence alignment score = 3069.1
RMSD between 574 pruned atom pairs is 0.541 angstroms; (across all 610 pairs:
1.684)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6b0n_BG505_NFL_G.pdb, chain G (#1) with target, chain G (#),
sequence alignment score = 3034.9
RMSD between 577 pruned atom pairs is 0.529 angstroms; (across all 610 pairs:
1.607)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6b0n_BG505_NFL_G.pdb, chain G (#1) with target, chain G (#),
sequence alignment score = 3051.7
RMSD between 570 pruned atom pairs is 0.514 angstroms; (across all 610 pairs:
1.560)
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 6b0n_BG505_NFL_G.pdb, chain G (#1) with target, chain G (#),
sequence alignment score = 3068.5
RMSD between 581 pruned atom pairs is 0.542 angstroms; (across all 610 pairs:
1.514)
Associated target chain G to chain G with 0 mismatches
[Repeated 4 time(s)]Associated target chain G to chain A with 158 mismatches
and/or gaps
[Repeated 4 time(s)] Chain information for target
---
Chain | Description
3.1/G 3.2/G 3.3/G 3.4/G 3.5/G | No description available
> select subtract #2
4754 atoms, 4846 bonds, 610 residues, 1 model selected
> select subtract #1
Nothing selected
> hide #1 models
> show #1 models
> hide #2 models
> show #2 models
> hide #1 models
> show #1 models
> hide #1 models
> show #1 models
> hide #!3 models
> show #!3 models
> hide #2 models
> hide #1 models
> hide #!3 models
> show #!3 models
> hide #3.1 models
> show #3.1 models
> hide #3.5 models
> hide #3.4 models
> hide #3.3 models
> hide #3.2 models
> hide #3.1 models
> show #3.1 models
> hide #3.1 models
> hide #!3 models
> show #1 models
> show #2 models
> toolshed show
> ui tool show "Selection Inspector"
> ui tool show "Show Sequence Viewer"
> sequence chain #1/G #3.1/G #3.2/G #3.3/G #3.4/G #3.5/G
Alignment identifier is 1
> sequence chain #2/A
Destroying pre-existing alignment with identifier 2/A
Alignment identifier is 2/A
> ui tool show "Blast Protein"
> select add #1
4754 atoms, 4846 bonds, 610 residues, 1 model selected
> select add #2
14990 atoms, 15191 bonds, 1265 residues, 2 models selected
> toolshed show
Downloading bundle SEQCROW-1.5.4-py3-none-any.whl
Successfully installed SEQCROW-1.5.4 Send2Trash-1.8.0
Installed SEQCROW (1.5.4)
> ui tool show "Model Panel"
> ui tool show "2D Builder"
Please register the custom scheme 'editor' via
QWebEngineUrlScheme::registerScheme() before installing the custom scheme
handler.
> ui tool show "Molecular Dynamics Viewer"
Please register the custom scheme 'kmd' via
QWebEngineUrlScheme::registerScheme() before installing the custom scheme
handler.
> ui tool show Matchmaker
> matchmaker #2/A#1/G to #1/G#2/A pairing ss
Must use different reference and match structures
> close #3
> close
> open "/Users/yesenia.acevedo/Documents/Ciencias
> Medicas/Investigacion/Proposal/Drafts/1-BG505-CP-L6.pdb" format pdb
Chain information for 1-BG505-CP-L6.pdb #1
---
Chain | Description
A | No description available
> open "/Users/yesenia.acevedo/Documents/Ciencias
> Medicas/Investigacion/Proposal/Drafts/6b0n_BG505_NFL_G.pdb"
Chain information for 6b0n_BG505_NFL_G.pdb #2
---
Chain | Description
G | No description available
> hide #2 models
> show #2 models
> ui tool show Matchmaker
> matchmaker #2/G to #1/A pairing ss
Parameters
---
Chain pairing | ss
Alignment algorithm | Needleman-Wunsch
Similarity matrix | BLOSUM-62
SS fraction | 0.3
Gap open (HH/SS/other) | 18/18/6
Gap extend | 1
SS matrix | | | H | S | O
---|---|---|---
H | 6 | -9 | -6
S | | 6 | -6
O | | | 4
Iteration cutoff | 2
Matchmaker 1-BG505-CP-L6.pdb, chain A (#1) with 6b0n_BG505_NFL_G.pdb, chain G
(#2), sequence alignment score = 2044.1
RMSD between 444 pruned atom pairs is 0.407 angstroms; (across all 458 pairs:
2.370)
> select add #1
10236 atoms, 10345 bonds, 655 residues, 1 model selected
Alignment identifier is 1/A
> select #1/A:179
10 atoms, 9 bonds, 1 residue, 1 model selected
> select #1/A:179
10 atoms, 9 bonds, 1 residue, 1 model selected
> select #1/A:179
10 atoms, 9 bonds, 1 residue, 1 model selected
> select #1/A:1-179
2835 atoms, 2867 bonds, 179 residues, 1 model selected
> color sel magenta
Traceback (most recent call last):
File
"/Users/yesenia.acevedo/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File
"/Users/yesenia.acevedo/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seq_view/seq_canvas.py", line 1862, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
File
"/Users/yesenia.acevedo/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seq_view/seq_canvas.py", line 1862, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File
"/Users/yesenia.acevedo/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seq_view/seq_canvas.py", line 1862, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
See log for complete Python traceback.
Traceback (most recent call last):
File
"/Users/yesenia.acevedo/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/core/triggerset.py", line 134, in invoke
return self._func(self._name, data)
File
"/Users/yesenia.acevedo/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seq_view/seq_canvas.py", line 1862, in update_swatches
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
File
"/Users/yesenia.acevedo/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seq_view/seq_canvas.py", line 1862, in <listcomp>
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
AttributeError: 'Sequence' object has no attribute 'structure'
Error processing trigger "changes done":
AttributeError: 'Sequence' object has no attribute 'structure'
File
"/Users/yesenia.acevedo/Desktop/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-
packages/chimerax/seq_view/seq_canvas.py", line 1862, in
assoc_structures = set([chain.structure for chain in aseq.match_maps.keys()])
See log for complete Python traceback.
OpenGL version: 4.1 Metal - 76.3
OpenGL renderer: Apple M1
OpenGL vendor: Apple
Python: 3.9.11
Locale: UTF-8
Qt version: PyQt6 6.3.1, Qt 6.3.1
Qt runtime version: 6.3.2
Qt platform: cocoa
Hardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Chip: Apple M1
Total Number of Cores: 8 (4 performance and 4 efficiency)
Memory: 8 GB
System Firmware Version: 7459.141.1
OS Loader Version: 7459.141.1
Software:
System Software Overview:
System Version: macOS 12.5.1 (21G83)
Kernel Version: Darwin 21.6.0
Time since boot: 59 minutes
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Display Type: Built-In Retina LCD
Resolution: 2560 x 1600 Retina
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: Yes
Connection Type: Internal
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.3
asttokens: 2.0.8
Babel: 2.10.3
backcall: 0.2.0
blockdiag: 3.0.0
build: 0.8.0
certifi: 2021.10.8
cftime: 1.6.2
charset-normalizer: 2.1.1
ChimeraX-AddCharge: 1.4
ChimeraX-AddH: 2.2
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2.1
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.6
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.3
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.41.4
ChimeraX-AtomicLibrary: 8.0.2
ChimeraX-AtomSearch: 2.0.1
ChimeraX-AxesPlanes: 2.3
ChimeraX-BasicActions: 1.1.2
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.1.2
ChimeraX-BondRot: 2.0.1
ChimeraX-BugReporter: 1.0.1
ChimeraX-BuildStructure: 2.7.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.2
ChimeraX-ButtonPanel: 1.0.1
ChimeraX-CageBuilder: 1.0.1
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.3.1
ChimeraX-ChangeChains: 1.0.2
ChimeraX-CheckWaters: 1.3
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.4
ChimeraX-ColorActions: 1.0.3
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5.2
ChimeraX-CommandLine: 1.2.4
ChimeraX-ConnectStructure: 2.0.1
ChimeraX-Contacts: 1.0.1
ChimeraX-Core: 1.5.dev202210070217
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0.1
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.1
ChimeraX-DistMonitor: 1.3
ChimeraX-DockPrep: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0.1
ChimeraX-FunctionKey: 1.0.1
ChimeraX-Geometry: 1.2
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.4
ChimeraX-Help: 1.2.1
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0.1
ChimeraX-Label: 1.1.7
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.5
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.2
ChimeraX-Map: 1.1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0.1
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1.1
ChimeraX-Markers: 1.0.1
ChimeraX-Mask: 1.0.1
ChimeraX-MatchMaker: 2.0.9
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.2
ChimeraX-Meeting: 1.0.1
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.8
ChimeraX-MMTF: 2.2
ChimeraX-Modeller: 1.5.6
ChimeraX-ModelPanel: 1.3.6
ChimeraX-ModelSeries: 1.0.1
ChimeraX-Mol2: 2.0
ChimeraX-Mole: 1.0
ChimeraX-Morph: 1.0.1
ChimeraX-MouseModes: 1.1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.3
ChimeraX-OpenCommand: 1.9.1
ChimeraX-PDB: 2.6.8
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0.1
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-RenumberResidues: 1.1
ChimeraX-ResidueFit: 1.0.1
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5.1
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.7.2
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0.1
ChimeraX-Shortcuts: 1.1.1
ChimeraX-ShowSequences: 1.0.1
ChimeraX-SideView: 1.0.1
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.10
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-StructMeasure: 1.1
ChimeraX-Struts: 1.0.1
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0.1
ChimeraX-SwapRes: 2.1.3
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1.2
ChimeraX-ToolshedUtils: 1.2.1
ChimeraX-Tug: 1.0.1
ChimeraX-UI: 1.24.2
ChimeraX-uniprot: 2.2.1
ChimeraX-UnitCell: 1.0.1
ChimeraX-ViewDockX: 1.1.3
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0.1
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0.1
ChimeraX-WebServices: 1.1.0
ChimeraX-Zone: 1.0.1
colorama: 0.4.5
cxservices: 1.2
cycler: 0.11.0
Cython: 0.29.32
debugpy: 1.6.3
decorator: 5.1.1
docutils: 0.19
entrypoints: 0.4
executing: 1.1.0
filelock: 3.7.1
fonttools: 4.37.4
funcparserlib: 1.0.0
grako: 3.16.5
h5py: 3.7.0
html2text: 2020.1.16
idna: 3.4
ihm: 0.33
imagecodecs: 2022.2.22
imagesize: 1.4.1
importlib-metadata: 5.0.0
ipykernel: 6.15.3
ipython: 8.4.0
ipython-genutils: 0.2.0
jedi: 0.18.1
Jinja2: 3.1.2
jupyter-client: 7.3.4
jupyter-core: 4.11.1
kiwisolver: 1.4.4
line-profiler: 3.5.1
lxml: 4.9.1
lz4: 4.0.2
MarkupSafe: 2.1.1
matplotlib: 3.5.2
matplotlib-inline: 0.1.6
MolecularDynamicsViewer: 1.4
msgpack: 1.0.4
nest-asyncio: 1.5.6
netCDF4: 1.6.0
networkx: 2.8.5
numexpr: 2.8.3
numpy: 1.23.1
openvr: 1.23.701
packaging: 21.3
ParmEd: 3.4.3
parso: 0.8.3
pep517: 0.13.0
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 9.2.0
pip: 22.2.2
pkginfo: 1.8.3
prompt-toolkit: 3.0.31
psutil: 5.9.1
ptyprocess: 0.7.0
pure-eval: 0.2.2
pycollada: 0.7.2
pydicom: 2.3.0
Pygments: 2.12.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.9
PyQt6-commercial: 6.3.1
PyQt6-Qt6: 6.3.2
PyQt6-sip: 13.4.0
PyQt6-WebEngine-commercial: 6.3.1
PyQt6-WebEngine-Qt6: 6.3.2
python-dateutil: 2.8.2
pytz: 2022.4
pyzmq: 24.0.1
qtconsole: 5.3.1
QtPy: 2.2.1
RandomWords: 0.4.0
requests: 2.28.1
scipy: 1.9.0
Send2Trash: 1.8.0
SEQCROW: 1.5.4
setuptools: 65.1.1
setuptools-scm: 7.0.5
sfftk-rw: 0.7.2
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 5.1.1
sphinx-autodoc-typehints: 1.19.1
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 3.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
stack-data: 0.5.1
tables: 3.7.0
tifffile: 2022.7.31
tinyarray: 1.2.4
tomli: 2.0.1
tornado: 6.2
traitlets: 5.3.0
typing-extensions: 4.4.0
urllib3: 1.26.12
wcwidth: 0.2.5
webcolors: 1.12
wheel: 0.37.1
wheel-filename: 1.4.1
zipp: 3.8.1
![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Hi Yesenia,
--Eric