Timeline



Jan 17, 2022:

10:40 PM Ticket #5743 (Quick Start Guide: Linux Python missing bz2 module) closed by Greg Couch
fixed: This is fixed in the post 1.3 daily build. Our CentOS build …
7:56 PM Ticket #5941 (Crash checking if clip planes changed after 'select' command) created by chimerax-bug-report@…
[…]
7:44 PM Ticket #5940 (SMILES server-connection failure) created by cyeow1@…
[…]
2:21 PM Ticket #5939 ("Fake" attribute state manager lacks some methods) created by chimerax-bug-report@…
[…]
12:55 PM Ticket #5938 (Graphics driver crash, macOS 10.15.7, Intel Iris Graphics 6100) created by chimerax-bug-report@…
[…]
11:08 AM Ticket #5937 (Crash in garbage collection during new-object allocation) created by chimerax-bug-report@…
[…]
8:33 AM Ticket #5936 (Crash after volume level command) created by chimerax-bug-report@…
[…]
2:38 AM Ticket #5935 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
2:17 AM Ticket #5934 (Crash updating volume drawings after models close) created by chimerax-bug-report@…
[…]

Jan 15, 2022:

4:10 AM Ticket #5933 (Check for new version: name '_getuser' is not defined) created by chimerax-bug-report@…
[…]

Jan 14, 2022:

6:25 PM Ticket #5932 (Add independent center of rotation mouse mode) created by juliannahan@…
[…]
5:20 PM Ticket #5931 (Graphics driver crash, macOS 11.6.1, Intel UHD Graphics 630) created by chimerax-bug-report@…
[…]
5:08 PM Ticket #5930 (Graphics driver crash, macOS 11.6.1, Intel UHD Graphics 630) created by chimerax-bug-report@…
[…]
4:38 PM Ticket #5929 (Crash in event loop) created by chimerax-bug-report@…
[…]
3:54 PM Ticket #5928 ("name 'stream' is not defined" opening model positions file) closed by Tom Goddard
fixed: There is a mistake in the ChimeraX code that is trying to print an …
3:34 PM Ticket #5926 (ChimeraX 1.3 won't start (Windows 10)) closed by Tom Goddard
nonchimerax: The most common reason ChimeraX fails to start is your system graphics …
3:29 PM Ticket #5928 ("name 'stream' is not defined" opening model positions file) created by jribeiro@…
[…]
2:46 PM Ticket #5927 (Attempt to use either positions or matrix file) closed by Tom Goddard
not a bug: I don't understand what you are trying to do. If you are trying to …
1:10 PM Ticket #5924 (Crash in event loop) closed by pett
can't reproduce
1:09 PM Ticket #5923 (Crash in Clashes GUI generating command) closed by pett
can't reproduce
1:06 PM Ticket #5922 (Crash fetching Ring's "aromatic" property) closed by pett
duplicate: Hi Yen-Li, Thanks for reporting this problem. It was fixed about 3 …
10:06 AM Ticket #5927 (Attempt to use either positions or matrix file) created by jribeiro@…
[…] model.cmx
9:04 AM Ticket #5926 (ChimeraX 1.3 won't start (Windows 10)) created by sitb@…
[…]
8:16 AM Ticket #5925 (Swapaa: name 'critera' is not defined) created by chimerax-bug-report@…
[…]
8:07 AM Ticket #5924 (Crash in event loop) created by chimerax-bug-report@…
[…]
3:40 AM Ticket #5923 (Crash in Clashes GUI generating command) created by chimerax-bug-report@…
[…]
1:38 AM Ticket #5918 (ISOLDE: implicit solvent applied twice if CUDA fails and falls back to ...) closed by Tristan Croll
fixed: SBGRID are fixing the CUDA library error, and the bug in ISOLDE's …

Jan 13, 2022:

11:41 PM Ticket #5922 (Crash fetching Ring's "aromatic" property) created by yen-li.li@…
[…]
5:32 PM Ticket #4902 ("key" command does not show color key if Color Key graphical interface ...) closed by pett
fixed
5:22 PM 2022-1-13 edited by Tom Goddard
(diff)
5:18 PM 2022-1-13 edited by Tom Goddard
(diff)
5:04 PM Dev2022-1-13 edited by Tom Goddard
(diff)
4:47 PM Ticket #5911 (Problem with realsense command: Couldn't resolve requests) closed by Tom Goddard
can't reproduce: Glad someone is trying the realsense depth camera with VR. But they …
4:35 PM Ticket #5913 (Crash in ctypes crash after session opened) closed by Tom Goddard
can't reproduce: All the user did was open a session file […] which appears to …
3:58 PM Ticket #5919 (Problem reading cube file: could not convert string to float) closed by Tom Goddard
can't reproduce: All I can guess is the user overwrote the file so it was no longer in …
3:57 PM Ticket #5921 (Crash after running MatchMaker) closed by pett
can't reproduce
12:33 PM Ticket #5916 (Crash after running MatchMaker) closed by pett
can't reproduce
12:18 PM Ticket #5921 (Crash after running MatchMaker) created by chimerax-bug-report@…
[…]
11:11 AM 2022-1-13 edited by Tom Ferrin
(diff)
11:09 AM 2022-1-13 edited by Tom Ferrin
(diff)
10:55 AM Ticket #5915 (Swapaa failure setting stick size) closed by pett
duplicate: Hi Yen-Li, Thanks for reporting this problem. It was fixed 3 days …
10:52 AM Ticket #5914 (Fatal Qt error during app initialization) closed by pett
can't reproduce
9:57 AM Ticket #5920 (Restoring session with volume not found leads to errors) created by Tom Goddard
If when restoring a session a volume is not found and the user does …
9:53 AM Ticket #5910 (Multiple volume/session failures followed by out of memory opening ...) closed by Tom Goddard
nonchimerax: The error says "MemoryError: not enough memory" after opening a …
9:46 AM Ticket #5907 (Better starting directory when ChimeraX launched by file association) reopened by Tom Goddard
Should test if same behavior in Windows 11.
9:45 AM Ticket #5909 (Crash during/after AlphaFold prediction) closed by Tom Goddard
can't reproduce: Crash in Qt event loop. My best guess is that the Qt html panel for …
9:41 AM Ticket #5919 (Problem reading cube file: could not convert string to float) created by chimerax-bug-report@…
[…]
6:55 AM Ticket #5918 (ISOLDE: implicit solvent applied twice if CUDA fails and falls back to ...) created by richard_walsh@…
[…]
3:35 AM Ticket #5916 (Crash after running MatchMaker) created by chimerax-bug-report@…
[…]
3:31 AM Ticket #5890 (openmm.OpenMMException: Error launching CUDA compiler) closed by Tristan Croll
fixed: Great! To my knowledge the first instance of ISOLDE running under WSL2 …
2:21 AM Ticket #5915 (Swapaa failure setting stick size) created by yen-li.li@…
[…]

Jan 12, 2022:

11:11 PM Ticket #5914 (Fatal Qt error during app initialization) created by chimerax-bug-report@…
[…]
10:09 PM Ticket #5913 (Crash in ctypes crash after session opened) created by chimerax-bug-report@…
[…]
9:06 PM Ticket #5912 (Crash handling tool window closeEvent after AlphaFold prediction finishes) created by chimerax-bug-report@…
[…]
9:03 PM Ticket #5911 (Problem with realsense command: Couldn't resolve requests) created by chimerax-bug-report@…
[…]
6:59 PM Ticket #5910 (Multiple volume/session failures followed by out of memory opening ...) created by xupeiyu3@…
[…]
6:20 PM NTTData edited by Elaine Meng
(diff)
6:20 PM NTTData edited by Elaine Meng
(diff)
5:46 PM Ticket #5442 (multiple columns of options) closed by pett
fixed: Changed the suggested parts of the Clashes interface to use multiple …
2:45 PM Ticket #5907 (Better starting directory when ChimeraX launched by file association) closed by Tom Goddard
nonchimerax: After rebooting Windows 10 I observe the same behavior that double …
10:38 AM Ticket #5909 (Crash during/after AlphaFold prediction) created by chimerax-bug-report@…
[…]
10:09 AM Ticket #5908 (Crash in event loop after hiding models) closed by pett
can't reproduce
10:05 AM Ticket #5906 (Calling windowShouldClose: on the delegate for the QNSPanel) closed by pett
can't reproduce
9:41 AM Ticket #5908 (Crash in event loop after hiding models) created by chimerax-bug-report@…
[…]
4:47 AM Ticket #5907 (Better starting directory when ChimeraX launched by file association) created by Tristan Croll
[…]
12:30 AM Ticket #5905 (Linux: No module named '_bz2') closed by Greg Couch
fixed: Added bzip2 development libraries to the CentOS 7 and CentOS 8 images …

Jan 11, 2022:

8:55 PM Ticket #5906 (Calling windowShouldClose: on the delegate for the QNSPanel) created by chimerax-bug-report@…
[…]
8:23 PM Ticket #5904 (Graphics driver crash, macOS 10.14.6, Intel Iris Pro) closed by Tom Goddard
nonchimerax: Apple graphics driver crash.
5:55 PM Ticket #5903 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
2:36 PM Ticket #5905 (Linux: No module named '_bz2') created by chimerax-bug-report@…
[…]
1:38 PM Ticket #5904 (Graphics driver crash, macOS 10.14.6, Intel Iris Pro) created by chimerax-bug-report@…
[…]
11:47 AM Ticket #5903 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
11:27 AM Ticket #5183 (Features covers image on download page for some versions of Chrome) closed by Zach Pearson
can't reproduce: Newer versions of browsers don't seem to have this issue.
10:53 AM Ticket #5902 (OpenMM: RuntimeError: Release Object) closed by Tristan Croll
can't reproduce: Yeah... chances are this is already fixed, but if not will have to …
10:47 AM Ticket #5889 (openmm.OpenMMException: Error compiling kernel) closed by Tristan Croll
limitation: The error message itself doesn't give much to go on, but I think the …
10:18 AM Ticket #5902 (OpenMM: RuntimeError: Release Object) created by chimerax-bug-report@…
[…]
9:58 AM 2022-1-13 created by Tom Goddard
9:57 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:56 AM DeveloperMeetings edited by Tom Goddard
(diff)
9:44 AM Ticket #5901 (Unknown crash with unformatted stack trace) closed by pett
can't reproduce: Even more uninformative than usual.
9:36 AM Ticket #5898 (Crash opening mmCIF) closed by pett
can't reproduce
9:31 AM Ticket #5901 (Unknown crash with unformatted stack trace) created by chimerax-bug-report@…
[…]
7:14 AM Ticket #5900 (ISOLDE: add real-space map: structure is None) created by leonardotrosa@…
[…]
7:13 AM Ticket #5899 (ISOLDE: swap equivalent atoms: Values array length 3 does not match ...) created by leonardotrosa@…
[…]
5:30 AM Ticket #5898 (Crash opening mmCIF) created by chimerax-bug-report@…
[…]

Jan 10, 2022:

4:52 PM Ticket #5897 (Add per-residue correlation calculation like Phenix) created by yumeng.yan@…
On Jan 10, 2022, at 3:48 PM, Yumeng Yan wrote: Hi Tom, ... Another …
4:38 PM Ticket #5896 (Add measure correlation command) closed by Tom Goddard
fixed: Added measure correlation command to measure the correlation between …
3:41 PM Ticket #5896 (Add measure correlation command) created by yumeng.yan@…
Yumeng Yan was using fitmap with shift false and rotate false options …
3:15 PM Ticket #5892 (Failure reading IMOD file) closed by Tom Goddard
fixed: Fixed in tonight's ChimeraX daily builds. ChimeraX was not correctly …
2:08 PM Ticket #5878 (Crash on redraw with Rapid Access still showing) closed by pett
can't reproduce: Line 21 of changes.py is also a 'return' statement. This whole ticket …
10:57 AM Ticket #5894 (Linux: ImportError: libGLU.so.1: cannot open shared object file: No ...) closed by Greg Couch
worksforme: User needs to install mesa libGLU package. On Ubuntu 20.04, that is …
10:55 AM Ticket #5895 (Add volume surface and mesh gui panel) created by kelvin.kclau@…
On Jan 10, 2022, at 4:47 AM, Kelvin Lau via ChimeraX-users wrote: …
10:10 AM Ticket #5885 (Error checking for new version: NameError: name '_getuser' is not defined) closed by Greg Couch
fixed: Fixed in the daily build.
9:34 AM Ticket #5886 (Crash in garbage collection during new-object allocation) closed by pett
duplicate
9:30 AM Ticket #5884 (Crash in trigger handler after saving image) closed by pett
can't reproduce
7:07 AM Ticket #5894 (Linux: ImportError: libGLU.so.1: cannot open shared object file: No ...) created by chimerax-bug-report@…
[…]
6:26 AM Ticket #5893 (Blast results problem: 'NoneType' object has no attribute 'split') created by shabir.najmudin@…
[…]
4:18 AM Ticket #5892 (Failure reading IMOD file) created by wanda.kukulski@…
[…] test3.mod
2:29 AM Ticket #5891 (Crash in change-tracking after 'cd' command) created by vijayalphafold@…
[…]

Jan 9, 2022:

9:32 AM Ticket #5890 (openmm.OpenMMException: Error launching CUDA compiler) created by jmkrieger@…
[…]

Jan 8, 2022:

12:19 PM Ticket #5888 (Time out error checking for new ChimeraX version) closed by Greg Couch
fixed: Ignore network/server errors when checking for new version.
12:17 PM Ticket #5889 (openmm.OpenMMException: Error compiling kernel) created by Alexandrea.Rizo@…
[…]

Jan 7, 2022:

8:10 PM Ticket #5828 (Crash drawing frame) closed by Tom Goddard
can't reproduce: We have seen many crashes on Windows in draw_new_frame() which is …
7:55 PM Ticket #5881 (Save TIFF stack: ImageJ hyperstack shape and axes do not match) closed by Tom Goddard
fixed: Fixed. The call to tifffile.py imwrite() specified axis order …
7:44 PM Ticket #5888 (Time out error checking for new ChimeraX version) created by goddard@…
[…]
11:53 AM Ticket #5887 (swapna) created by anton.vila@…
Implement swapna command.
7:28 AM Ticket #5886 (Crash in garbage collection during new-object allocation) created by chimerax-bug-report@…
[…]

Jan 6, 2022:

11:36 PM Ticket #5885 (Error checking for new version: NameError: name '_getuser' is not defined) created by chimerax-bug-report@…
[…]
10:38 PM Ticket #5884 (Crash in trigger handler after saving image) created by chimerax-bug-report@…
[…]
8:49 PM Ticket #5883 (MemoryError saving map in session) closed by Tom Goddard
limitation: Out of memory error saving a session trying to convert to a byte …
8:21 PM Ticket #5880 (Crash after restoring session with Segger session restore error) closed by Tom Goddard
can't reproduce: ChimeraX crashed after opening a session when trying to draw Thread …
8:11 PM Ticket #5879 (Could not find virtual screen for QCocoaScreen) closed by Tom Goddard
duplicate: ChimeraX startup failure due to a Qt bug Could not find virtual …
8:05 PM Training edited by Tom Goddard
(diff)
8:01 PM 2022-1-6 edited by Tom Goddard
(diff)
8:00 PM 2022-1-6 edited by Tom Goddard
(diff)
7:59 PM 2022-1-6 edited by Tom Goddard
(diff)
2:06 PM NTTData edited by Elaine Meng
(diff)
2:03 PM NTTData edited by Elaine Meng
(diff)
1:23 PM NTTData edited by Elaine Meng
(diff)
11:29 AM 2022-1-6 edited by Scooter Morris
(diff)
11:28 AM 2022-1-6 edited by Scooter Morris
(diff)
11:09 AM 2022-1-6 edited by Greg Couch
(diff)
11:08 AM 2022-1-6 edited by Greg Couch
(diff)
11:01 AM 2022-1-6 edited by Scooter Morris
(diff)
10:59 AM 2022-1-6 edited by Scooter Morris
(diff)
10:37 AM Ticket #5882 (Qt crash during exit) closed by pett
can't reproduce: Hi, Thanks for reporting this problem. We recommend that you …
10:35 AM Ticket #5701 ("Remind me later" false on new version check keeps reminding) closed by Greg Couch
fixed: Fixed on 30 Nov 2021, 86d23b00f0caf436f38e89534da9cffc6882b8ba. The …
1:14 AM Ticket #5883 (MemoryError saving map in session) created by chimerax-bug-report@…
[…]
12:57 AM Ticket #5882 (Qt crash during exit) created by zgx2015@…
[…]

Jan 5, 2022:

4:06 PM Ticket #5796 (Stack overflow, possibly due to screen locking) closed by pett
can't reproduce: Leaving ChimeraX running overnight also did not produce a crash. I …
4:03 PM Ticket #5881 (Save TIFF stack: ImageJ hyperstack shape and axes do not match) created by kimsk@…
[…]
3:15 PM Ticket #5880 (Crash after restoring session with Segger session restore error) created by chimerax-bug-report@…
[…]
1:29 PM Ticket #5879 (Could not find virtual screen for QCocoaScreen) created by chimerax-bug-report@…
[…]
11:23 AM Ticket #5878 (Crash on redraw with Rapid Access still showing) created by chimerax-bug-report@…
[…]
10:07 AM Ticket #5875 (Crash during or after session close, possibly in check_for_changes) closed by pett
can't reproduce
8:16 AM Ticket #5877 (Notes with markers/blobs) created by Tristan Croll
[…]
7:32 AM Ticket #5876 (Crash recording spin movie) created by charlotte12brown@…
[…]
7:31 AM Ticket #5875 (Crash during or after session close, possibly in check_for_changes) created by chimerax-bug-report@…
[…]

Jan 4, 2022:

6:08 PM Ticket #5874 (Renumber residues) created by yen-li.li@…
Hi Eric, Thank you for the update. Is it possible to renumber the …
5:33 PM Ticket #5873 (Dual display problem) closed by pett
duplicate
5:22 PM Ticket #5873 (Dual display problem) created by chimerax-bug-report@…
[…]
5:21 PM Ticket #5864 (Crash showing Rapid Access at startup) closed by pett
can't reproduce: Thanks for the information. The update _could_ have been the problem, …
5:17 PM Training edited by Tom Goddard
(diff)
5:11 PM Training edited by Tom Goddard
(diff)
5:04 PM Ticket #5868 (Chain-chooser error) closed by pett
fixed: Fixed by …
12:30 PM Ticket #5504 (Python shell broken with PyQt 6.2) closed by Tom Goddard
fixed: I improved the qtconsole patch so it works with both PyQt6 and PyQt5 …
11:51 AM Ticket #5871 (Coordset slider doesn't start at current coordinate set) closed by Tom Goddard
fixed: Fixed. Code was trying to set the initial slider value but called the …
11:29 AM Dev2022-1-13 created by Tom Goddard
11:27 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:26 AM DeveloperMeetings2021 created by Tom Goddard
11:25 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:24 AM GroupMeetings2021 created by Tom Goddard
11:23 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:21 AM 2022-1-6 created by Tom Goddard
11:20 AM 2021-12-16 edited by Tom Goddard
(diff)
11:19 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:15 AM Ticket #5872 (Qt crash during exit) closed by pett
duplicate
10:13 AM Ticket #5870 (Crash in event loop) closed by pett
can't reproduce
9:56 AM Ticket #5872 (Qt crash during exit) created by chimerax-bug-report@…
[…]

Jan 3, 2022:

6:45 PM Ticket #5871 (Coordset slider doesn't start at current coordinate set) created by Tony Schaefer
[…]
5:22 PM Ticket #5870 (Crash in event loop) created by chimerax-bug-report@…
[…]
5:03 PM Ticket #5869 (Linux flavor) closed by pett
not a bug: Ah, I see. I was looking at #5864 and didn't even recognize "Zorin …
4:52 PM Ticket #5869 (Linux flavor) created by pett
Would it be possible to get the Linux flavor/release (lsb_release -a) …
4:46 PM Ticket #5868 (Chain-chooser error) created by pett
[…]
3:31 PM Ticket #5863 (Crash after/during saving session) closed by Tom Goddard
can't reproduce: User was saving a session save F:/ChimeraX/BMA/Simon/3NWV.cxs and it …
3:17 PM Ticket #5867 (Wrong download file name) created by pett
[…]
3:11 PM Ticket #5866 (Registration time-format error) created by pett
[…]
2:32 PM Ticket #5865 (CERTIFICATE_VERIFY_FAILED checking for newer version) created by pett
[…]
1:14 PM Ticket #5864 (Crash showing Rapid Access at startup) created by roberto.pestana@…
[…]
10:30 AM Ticket #5861 (Crash in garbage collection) closed by pett
duplicate
10:28 AM Ticket #5860 (Long atom spec crashes ChimeraX) closed by pett
duplicate
10:24 AM Ticket #5859 (Long atom spec crashes ChimeraX) closed by pett
duplicate: Duplicate of #4842
10:17 AM Ticket #5857 (Screen change crash) closed by pett
can't reproduce: version 0.91
9:37 AM Ticket #5855 ('Sequence' object has no attribute 'structure') closed by pett
duplicate

Jan 1, 2022:

1:29 PM Ticket #5863 (Crash after/during saving session) created by chimerax-bug-report@…
[…]
1:04 PM Ticket #5862 (Web server not responding to new-version check) created by chimerax-bug-report@…
[…]
3:07 AM Ticket #5861 (Crash in garbage collection) created by chimerax-bug-report@…
[…]

Dec 31, 2021:

10:00 PM Ticket #5848 (Crash recording movie) closed by Tom Goddard
nonchimerax: Probably graphics driver crash, Radeon, Windows. Crashed recording a …
9:54 PM Ticket #5841 (Crash showing side view) closed by Tom Goddard
duplicate: Side View just shown, got an expose event, was drawn with OpenGL and …
9:49 PM Ticket #5842 (Status bar destruction: wrapped C/C++ object of type QScreen has been ...) closed by Tom Goddard
duplicate: This ChimeraX error is fixed in the current version 1.3, was fixed …
9:46 PM Ticket #5845 (Graphics driver crash, macOS 11.6.1, Intel Iris Plus Graphics 640) closed by Tom Goddard
nonchimerax: Apple graphics driver crash. Was using 132 Gbytes of memory with a 9 …
9:41 PM Ticket #5832 (Graphics driver crash, macOS 10.15.7, GeForce GT 650M) closed by Tom Goddard
nonchimerax: Apple graphics driver crash. Ancient graphics, two displays.
6:31 PM Ticket #5826 (Crash in OpenVR waitGetPoses on Linuc) closed by Tom Goddard
nonchimerax: Appears to be a bug in SteamVR on Linux. Sad that that VR is still so …
3:16 PM ChangeLog edited by Elaine Meng
(diff)

Dec 30, 2021:

4:56 PM Ticket #5860 (Long atom spec crashes ChimeraX) created by chimerax-bug-report@…
[…]
4:55 PM Ticket #5859 (Long atom spec crashes ChimeraX) created by chimerax-bug-report@…
[…]
11:32 AM Ticket #5858 (Chain-selection menus too long when there are many chains, and some ...) created by Elaine Meng
On Dec 30, 2021, at 6:31 AM, Antón Vila-Sanjurjo via ChimeraX-users …
10:47 AM Ticket #5857 (Screen change crash) created by chimerax-bug-report@…
[…]
9:50 AM Ticket #5856 (Distances tool not updating) created by anton.vila@…
[…]
8:28 AM Ticket #5847 (CUDA_ERROR_UNKNOWN starting simulation) closed by Tristan Croll
fixed: Great to hear it's working now. Happy modelling!

Dec 29, 2021:

10:21 PM Ticket #5855 ('Sequence' object has no attribute 'structure') created by chimerax-bug-report@…
[…]
5:28 PM Ticket #5854 (Crash creating QWebEngineProfile) created by zel@…
[…]
3:51 PM Ticket #5853 (Make alphafold predict check that the correct AlphaFold version is ...) created by Tom Goddard
Have ChimeraX AlphaFold prediction google colab script check that the …
3:43 PM Ticket #5849 (bare "seq align" throws traceback) closed by pett
fixed
3:29 PM Ticket #5851 (Crash removing dock widget from main window after/during AlphaFold ...) closed by pett
can't reproduce: Maybe Qt6 will fix this? Several successful operations are performed …
3:07 PM Ticket #5852 (Ignore non-protein sequences for some operations) created by Elaine Meng
[…]
1:15 PM Ticket #5851 (Crash removing dock widget from main window after/during AlphaFold ...) created by chimerax-bug-report@…
[…]
11:31 AM Ticket #5846 (CUDA_ERROR_UNKNOWN starting simulation) closed by Tristan Croll
duplicate: Duplicate of #5487.
11:30 AM Ticket #5850 (Improve File→Save when multiple alignments open) created by Elaine Meng
[…]
10:14 AM Ticket #5849 (bare "seq align" throws traceback) created by Elaine Meng
[…]
9:47 AM Ticket #5844 (dark gray vs. gray) closed by Elaine Meng
not a bug
2:24 AM Ticket #5848 (Crash recording movie) created by chimerax-bug-report@…
[…]

Dec 28, 2021:

10:31 PM Ticket #5847 (CUDA_ERROR_UNKNOWN starting simulation) created by fanhongcheng20@…
[…]
10:29 PM Ticket #5846 (CUDA_ERROR_UNKNOWN starting simulation) created by chimerax-bug-report@…
[…]
2:50 PM Ticket #5845 (Graphics driver crash, macOS 11.6.1, Intel Iris Plus Graphics 640) created by chimerax-bug-report@…
[…]
11:16 AM Ticket #5844 (dark gray vs. gray) created by lochuynh@…
[…]
8:24 AM Ticket #5843 (VR clipping suggestions) created by Tristan Croll
[…]

Dec 27, 2021:

10:55 PM Ticket #5831 (Blast session-restore failure) closed by Zach Pearson
fixed: Should be fixed by …
10:55 PM Ticket #5836 (Blast session-restore failure) closed by Zach Pearson
fixed: Should be fixed by …
5:12 PM Ticket #5842 (Status bar destruction: wrapped C/C++ object of type QScreen has been ...) created by lochuynh@…
[…]
1:57 PM Ticket #5839 (Crash in event loop) closed by pett
can't reproduce
1:53 PM Ticket #5838 (new-version query not catching exception that getpass.getuser() throws) closed by pett
duplicate
1:40 PM Ticket #5837 (cant open chimerax) closed by pett
limitation: Hi Gustav, I'm sorry, but ChimeraX is not supported on Windows 7. …
1:35 PM Ticket #5835 (label-height check bad) closed by pett
fixed: Hi Wally! Thanks for reporting this. I've fixed the problem and the …
12:09 PM Ticket #5841 (Crash showing side view) created by chimerax-bug-report@…
[…]
11:26 AM Ticket #5840 (SSL failure on startup checking for new version) created by pett
[…]
11:25 AM Ticket #5834 (Long atom spec crashes ChimeraX) closed by pett
duplicate
11:16 AM Ticket #5833 (Long atom spec crashes ChimeraX) closed by pett
duplicate
3:09 AM Ticket #5839 (Crash in event loop) created by chimerax-bug-report@…
[…]
2:10 AM Ticket #5838 (new-version query not catching exception that getpass.getuser() throws) created by chimerax-bug-report@…
[…]

Dec 26, 2021:

10:24 PM Ticket #5837 (cant open chimerax) created by ngsundell@…
[…]
6:19 PM Ticket #5836 (Blast session-restore failure) created by xinkaili@…
[…]
1:14 PM Ticket #5835 (label-height check bad) created by novakw@…
[…]

Dec 25, 2021:

11:14 PM Ticket #5834 (Long atom spec crashes ChimeraX) created by chimerax-bug-report@…
[…]
11:06 PM Ticket #5833 (Long atom spec crashes ChimeraX) created by chimerax-bug-report@…
[…]
6:32 PM Ticket #5832 (Graphics driver crash, macOS 10.15.7, GeForce GT 650M) created by chimerax-bug-report@…
[…]
1:08 AM Ticket #5831 (Blast session-restore failure) created by chimerax-bug-report@…
[…]

Dec 24, 2021:

9:45 AM Ticket #5830 (Heap corrupted) closed by pett
can't reproduce
9:44 AM Ticket #5829 (Coulombic failure with explicit palette) closed by pett
duplicate: Fixed a year ago.
9:35 AM Ticket #5830 (Heap corrupted) created by chimerax-bug-report@…
[…]

Dec 23, 2021:

10:29 PM Ticket #5829 (Coulombic failure with explicit palette) created by chimerax-bug-report@…
[…]
3:25 PM Ticket #5828 (Crash drawing frame) created by stxamalg@…
[…]
10:11 AM Ticket #5825 (Crash with trashed stack) closed by pett
can't reproduce: Hi Valerie, Thanks for getting back to us. For now, this crash will …
9:54 AM Ticket #5827 (Crash in event loop) closed by pett
can't reproduce: Heap corruption
1:52 AM Ticket #5827 (Crash in event loop) created by chimerax-bug-report@…
[…]

Dec 22, 2021:

9:45 AM Ticket #5824 (Crash in event loop) closed by pett
can't reproduce
3:13 AM Ticket #5826 (Crash in OpenVR waitGetPoses on Linuc) created by chimerax-bug-report@…
[…]
1:27 AM Ticket #5825 (Crash with trashed stack) created by biou@…
[…]

Dec 21, 2021:

6:50 PM Ticket #5824 (Crash in event loop) created by chimerax-bug-report@…
[…]
3:30 PM Ticket #1011 (atomspec should not include bonds with only one end specified) closed by pett
fixed: Changed the behavior of the '~' operator and the ~sel command to …
11:50 AM DeveloperMeetings edited by Tom Goddard
(diff)
11:50 AM DeveloperMeetings edited by Tom Goddard
(diff)
10:29 AM Ticket #5823 ('VolumeViewer' object has no attribute 'tool_window') closed by pett
duplicate: Duplicate of #5015
10:14 AM Ticket #5821 (new-version query not catching exception that getpass.getuser() throws) closed by pett
duplicate: Apparently this "extremely unlikely" event isn't actually that unlikely.
10:11 AM Ticket #5820 (Crash in event loop) closed by pett
can't reproduce

Dec 20, 2021:

8:19 PM Ticket #5823 ('VolumeViewer' object has no attribute 'tool_window') created by chimerax-bug-report@…
[…]
2:23 PM Ticket #5822 (ISOLDE: .cif does not appear to contain any valid residue templates) created by kirk.n@…
[…]
1:37 PM Ticket #4676 (color byattribute colors residues even if no residue atom has an ...) closed by pett
fixed: In one of the code paths in "color byattr", the length of the array of …
12:28 PM Ticket #5821 (new-version query not catching exception that getpass.getuser() throws) created by chimerax-bug-report@…
[…]
11:34 AM Ticket #5820 (Crash in event loop) created by chimerax-bug-report@…
[…]
11:12 AM Ticket #5808 (Rotamers calls changed size() directly) closed by pett
fixed: Hi Yen-Li, Thanks for reporting this problem. I have committed a fix …
10:12 AM Ticket #5814 (Windows 7 graphics error) closed by Tom Goddard
nonchimerax: Windows 7 is not supported.
10:11 AM Ticket #5812 (Windows 7 graphics error) closed by Tom Goddard
nonchimerax: Windows 7 is not supported.
10:10 AM Ticket #5810 (Crash getting cursor position) closed by Tom Goddard
can't reproduce: Can't believe Qt actually crashes in getting the cursor position. And …
9:42 AM Ticket #5819 (Crash opening PDB file) closed by pett
can't reproduce
9:41 AM Ticket #5818 (Crash in event loop) closed by pett
can't reproduce
9:39 AM Ticket #5817 (Crash in event loop) closed by pett
can't reproduce
9:38 AM Ticket #5816 (Index error opening regular PDB in MD Viewer) closed by pett
limitation
9:34 AM Ticket #5815 (Crash showing Rapid Access at startup) closed by pett
can't reproduce
4:10 AM Ticket #5819 (Crash opening PDB file) created by chimerax-bug-report@…
[…]
3:13 AM Ticket #5818 (Crash in event loop) created by chimerax-bug-report@…
[…]
3:02 AM Ticket #5817 (Crash in event loop) created by chimerax-bug-report@…
[…]
3:00 AM Ticket #5816 (Index error opening regular PDB in MD Viewer) created by chimerax-bug-report@…
[…]

Dec 19, 2021:

11:50 PM Ticket #5815 (Crash showing Rapid Access at startup) created by chimerax-bug-report@…
[…]
10:34 PM Ticket #5814 (Windows 7 graphics error) created by chimerax-bug-report@…
[…]
10:34 PM Ticket #5813 (Version conflict during ISOLDE initialization?!?) created by chimerax-bug-report@…
[…]
5:43 PM Ticket #5812 (Windows 7 graphics error) created by chimerax-bug-report@…
[…]

Dec 18, 2021:

8:51 AM Ticket #5811 (Add Charge: handle UNK as templated if appropriate) created by chimerax-bug-report@…
[…]
6:41 AM Ticket #5810 (Crash getting cursor position) created by chimerax-bug-report@…
[…]
5:28 AM Ticket #5809 (Crash in event loop) created by p.albanese@…
[…]
Note: See TracTimeline for information about the timeline view.