![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Opened 4 years ago
Closed 4 years ago
#5825 closed defect (can't reproduce)
Crash with trashed stack
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard, Tristan Croll | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.15.7-x86_64-i386-64bit
ChimeraX Version: 1.3 (2021-12-08 23:08:33 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error:
Process: ChimeraX [3286]
Path: /private/var/folders/*/ChimeraX-1.3.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.3.0 (1.3.0.0)
Code Type: X86-64 (Native)
Parent Process: ??? [1]
Responsible: ChimeraX [3286]
User ID: 3026
Date/Time: 2021-12-22 10:25:07.856 +0100
OS Version: Mac OS X 10.15.7 (19H1519)
Report Version: 12
Anonymous UUID: 314FAA96-F8A0-4F05-6B67-1BC7DB274141
Sleep/Wake UUID: 38CC81EE-6685-47B7-AFA7-1AF9CA5FEE8D
Time Awake Since Boot: 59000 seconds
Time Since Wake: 31 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_MEMORY_ERROR at 0x000000010b559899
Exception Note: EXC_CORPSE_NOTIFY
Termination Signal: Bus error: 10
Termination Reason: Namespace SIGNAL, Code 0xa
Terminating Process: exc handler [3286]
VM Regions Near 0x10b559899:
Kernel Alloc Once 000000010b3e1000-000000010b3e3000 [ 8K] rw-/rwx SM=COW
--> mapped file 000000010b3e3000-000000010b648000 [ 2452K] r-x/rwx SM=COW Object_id=60da2f31
mapped file 000000010b648000-000000010b682000 [ 232K] rw-/rwx SM=COW Object_id=633c6531
Thread 0 Crashed:: CrBrowserMain
0 ??? 0x000000010b559899 0 + 4485126297
1 ??? 0x000000010b5b31eb 0 + 4485493227
2 ??? 0x00007fff7115c5fd 0 + 140735090640381
3 ChimeraX 000000000000000000 0 + 0
4 ??? 0x00007fff36e9aaf7 0 + 140734114671351
5 ??? 0x00007fff36e9a38d 0 + 140734114669453
6 ??? 0x00007fff36e996ce 0 + 140734114666190
7 ??? 0x00007fff35ac5aad 0 + 140734093875885
8 ??? 0x00007fff35ac57c5 0 + 140734093875141
9 ??? 0x00007fff35ac5569 0 + 140734093874537
10 ??? 0x00007fff3410e659 0 + 140734066910809
11 ??? 0x00007fff3410cea0 0 + 140734066904736
12 ??? 0x00007fff340febae 0 + 140734066846638
13 ??? 0x000000012566c62f 0 + 4922459695
14 ??? 0x0000000114b6bacf 0 + 4642486991
15 ??? 0x0000000114b70042 0 + 4642504770
16 ??? 0x00000001152f2702 0 + 4650379010
17 ??? 0x000000010b45e06d 0 + 4484096109
18 ??? 0x000000010b41f17d 0 + 4483838333
19 ??? 0x000000010b4f761c 0 + 4484724252
20 ??? 0x000000010b4f4ab3 0 + 4484713139
21 ??? 0x000000010b41f948 0 + 4483840328
22 ??? 0x000000010b42198a 0 + 4483848586
23 ??? 0x000000010b4f758c 0 + 4484724108
24 ??? 0x000000010b4f4ab3 0 + 4484713139
25 ??? 0x000000010b4f8283 0 + 4484727427
26 ??? 0x000000010b41f8d1 0 + 4483840209
27 ??? 0x000000010b4f758c 0 + 4484724108
28 ??? 0x000000010b4f4b4b 0 + 4484713291
29 ??? 0x000000010b4f8283 0 + 4484727427
30 ??? 0x000000010b4ee70b 0 + 4484687627
31 ??? 0x000000010b4eb592 0 + 4484674962
32 ??? 0x000000010b45d86a 0 + 4484094058
33 ??? 0x000000010b4f758c 0 + 4484724108
34 ??? 0x000000010b4f4b4b 0 + 4484713291
35 ??? 0x000000010b4f8283 0 + 4484727427
36 ??? 0x000000010b41f8d1 0 + 4483840209
37 ??? 0x000000010b4f758c 0 + 4484724108
38 ??? 0x000000010b4f4b4b 0 + 4484713291
39 ??? 0x000000010b4f8283 0 + 4484727427
40 ??? 0x000000010b41f8d1 0 + 4483840209
41 ??? 0x000000010b55de20 0 + 4485144096
42 ??? 0x000000010b55d537 0 + 4485141815
43 ??? 0x000000010b55db3f 0 + 4485143359
44 ??? 0x000000010b55da4b 0 + 4485143115
45 ??? 0x000000010b3dadc8 0 + 4483558856
46 ??? 0x00007fff70f63cc9 0 + 140735088573641
Thread 1:: ThreadPoolServiceThread
0 ??? 0x00007fff710adb96 0 + 140735089925014
1 ??? 0x000000011b01acc7 0 + 4748061895
2 ??? 0x000000011afa362b 0 + 4747572779
3 ??? 0x000000011af677cb 0 + 4747327435
4 ??? 0x000000011afaea94 0 + 4747618964
5 ??? 0x000000011afc2a7d 0 + 4747700861
6 ??? 0x000000011b00be07 0 + 4748000775
7 ??? 0x00007fff71168109 0 + 140735090688265
8 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 2:: ThreadPoolBackgroundWorker
0 ??? 0x00007fff710a4dfa 0 + 140735089888762
1 ??? 0x00007fff710a5170 0 + 140735089889648
2 ??? 0x000000011b010492 0 + 4748018834
3 ??? 0x000000011afb8778 0 + 4747659128
4 ??? 0x000000011afb9150 0 + 4747661648
5 ??? 0x000000011afb8c44 0 + 4747660356
6 ??? 0x000000011b00be07 0 + 4748000775
7 ??? 0x00007fff71168109 0 + 140735090688265
8 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 3:: Chrome_IOThread
0 ??? 0x00007fff710adb96 0 + 140735089925014
1 ??? 0x000000011b01acc7 0 + 4748061895
2 ??? 0x000000011afa362b 0 + 4747572779
3 ??? 0x000000011af677cb 0 + 4747327435
4 ??? 0x000000011eee7f06 0 + 4813913862
5 ??? 0x000000011afc2a7d 0 + 4747700861
6 ??? 0x000000011b00be07 0 + 4748000775
7 ??? 0x00007fff71168109 0 + 140735090688265
8 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 4:: NetworkConfigWatcher
0 ??? 0x00007fff710a4dfa 0 + 140735089888762
1 ??? 0x00007fff710a5170 0 + 140735089889648
2 ??? 0x000000011b010492 0 + 4748018834
3 ??? 0x000000011b0102cf 0 + 4748018383
4 ??? 0x000000011af381db 0 + 4747133403
5 ??? 0x000000011afa362b 0 + 4747572779
6 ??? 0x000000011af677cb 0 + 4747327435
7 ??? 0x000000011afc2a7d 0 + 4747700861
8 ??? 0x000000011b00be07 0 + 4748000775
9 ??? 0x00007fff71168109 0 + 140735090688265
10 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 5:: CompositorTileWorker1
0 ??? 0x00007fff710a7882 0 + 140735089899650
1 ??? 0x000000011b007e18 0 + 4747984408
2 ??? 0x000000011c2bf5f8 0 + 4767610360
3 ??? 0x000000011b00be07 0 + 4748000775
4 ??? 0x00007fff71168109 0 + 140735090688265
5 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 6:: Chrome_InProcGpuThread
0 ??? 0x00007fff710a4dfa 0 + 140735089888762
1 ??? 0x00007fff710a5170 0 + 140735089889648
2 ??? 0x000000011b010492 0 + 4748018834
3 ??? 0x000000011af3820f 0 + 4747133455
4 ??? 0x000000011afa362b 0 + 4747572779
5 ??? 0x000000011af677cb 0 + 4747327435
6 ??? 0x000000011afc2a7d 0 + 4747700861
7 ??? 0x000000011b00be07 0 + 4748000775
8 ??? 0x00007fff71168109 0 + 140735090688265
9 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 7:: Chrome_ChildIOThread
0 ??? 0x00007fff710adb96 0 + 140735089925014
1 ??? 0x000000011b01acc7 0 + 4748061895
2 ??? 0x000000011afa362b 0 + 4747572779
3 ??? 0x000000011af677cb 0 + 4747327435
4 ??? 0x000000011afc2a7d 0 + 4747700861
5 ??? 0x000000011b00be07 0 + 4748000775
6 ??? 0x00007fff71168109 0 + 140735090688265
7 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 8:: VizCompositorThread
0 ??? 0x00007fff710a4dfa 0 + 140735089888762
1 ??? 0x00007fff710a5170 0 + 140735089889648
2 ??? 0x000000011b010492 0 + 4748018834
3 ??? 0x000000011b0102cf 0 + 4748018383
4 ??? 0x000000011af381db 0 + 4747133403
5 ??? 0x000000011afa362b 0 + 4747572779
6 ??? 0x000000011af677cb 0 + 4747327435
7 ??? 0x000000011afc2a7d 0 + 4747700861
8 ??? 0x000000011b00be07 0 + 4748000775
9 ??? 0x00007fff71168109 0 + 140735090688265
10 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 9:: NetworkConfigWatcher
0 ??? 0x00007fff710a4dfa 0 + 140735089888762
1 ??? 0x00007fff710a5170 0 + 140735089889648
2 ??? 0x000000011b010492 0 + 4748018834
3 ??? 0x000000011b0102cf 0 + 4748018383
4 ??? 0x000000011af381db 0 + 4747133403
5 ??? 0x000000011afa362b 0 + 4747572779
6 ??? 0x000000011af677cb 0 + 4747327435
7 ??? 0x000000011afc2a7d 0 + 4747700861
8 ??? 0x000000011b00be07 0 + 4748000775
9 ??? 0x00007fff71168109 0 + 140735090688265
10 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 10:: NetworkConfigWatcher
0 ??? 0x00007fff710a4dfa 0 + 140735089888762
1 ??? 0x00007fff710a5170 0 + 140735089889648
2 ??? 0x000000011b010492 0 + 4748018834
3 ??? 0x000000011b0102cf 0 + 4748018383
4 ??? 0x000000011af381db 0 + 4747133403
5 ??? 0x000000011afa362b 0 + 4747572779
6 ??? 0x000000011af677cb 0 + 4747327435
7 ??? 0x000000011afc2a7d 0 + 4747700861
8 ??? 0x000000011b00be07 0 + 4748000775
9 ??? 0x00007fff71168109 0 + 140735090688265
10 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 11:: ThreadPoolSingleThreadForegroundBlocking0
0 ??? 0x00007fff710a4dfa 0 + 140735089888762
1 ??? 0x00007fff710a5170 0 + 140735089889648
2 ??? 0x000000011b010492 0 + 4748018834
3 ??? 0x000000011b0102cf 0 + 4748018383
4 ??? 0x000000011afb876a 0 + 4747659114
5 ??? 0x000000011afb9150 0 + 4747661648
6 ??? 0x000000011afb8d34 0 + 4747660596
7 ??? 0x000000011b00be07 0 + 4748000775
8 ??? 0x00007fff71168109 0 + 140735090688265
9 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 12:: MemoryInfra
0 ??? 0x00007fff710a4dfa 0 + 140735089888762
1 ??? 0x00007fff710a5170 0 + 140735089889648
2 ??? 0x000000011b010492 0 + 4748018834
3 ??? 0x000000011b0102cf 0 + 4748018383
4 ??? 0x000000011af381db 0 + 4747133403
5 ??? 0x000000011afa362b 0 + 4747572779
6 ??? 0x000000011af677cb 0 + 4747327435
7 ??? 0x000000011afc2a7d 0 + 4747700861
8 ??? 0x000000011b00be07 0 + 4748000775
9 ??? 0x00007fff71168109 0 + 140735090688265
10 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 13:: NetworkConfigWatcher
0 ??? 0x00007fff710a4dfa 0 + 140735089888762
1 ??? 0x00007fff710a5170 0 + 140735089889648
2 ??? 0x000000011b010492 0 + 4748018834
3 ??? 0x000000011b0102cf 0 + 4748018383
4 ??? 0x000000011af381db 0 + 4747133403
5 ??? 0x000000011afa362b 0 + 4747572779
6 ??? 0x000000011af677cb 0 + 4747327435
7 ??? 0x000000011afc2a7d 0 + 4747700861
8 ??? 0x000000011b00be07 0 + 4748000775
9 ??? 0x00007fff71168109 0 + 140735090688265
10 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 14:: com.apple.NSEventThread
0 ??? 0x00007fff710a4dfa 0 + 140735089888762
1 ??? 0x00007fff710a5170 0 + 140735089889648
2 ??? 0x00007fff36e9b785 0 + 140734114674565
3 ??? 0x00007fff36e9a252 0 + 140734114669138
4 ??? 0x00007fff36e996ce 0 + 140734114666190
5 ??? 0x00007fff342afea4 0 + 140734068620964
6 ??? 0x00007fff71168109 0 + 140735090688265
7 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 15:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 ??? 0x00007fff710a4dfa 0 + 140735089888762
1 ??? 0x00007fff710a5170 0 + 140735089889648
2 ??? 0x000000011b010492 0 + 4748018834
3 ??? 0x000000011b0102cf 0 + 4748018383
4 ??? 0x000000011afb876a 0 + 4747659114
5 ??? 0x000000011afb8e3d 0 + 4747660861
6 ??? 0x000000011afb8c74 0 + 4747660404
7 ??? 0x000000011b00be07 0 + 4748000775
8 ??? 0x00007fff71168109 0 + 140735090688265
9 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 16:
0 ??? 0x00007fff710a7882 0 + 140735089899650
1 ??? 0x000000010c0a3a9f 0 + 4496964255
2 ??? 0x00007fff71168109 0 + 140735090688265
3 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 17:: ThreadPoolForegroundWorker
0 ??? 0x00007fff710a4dfa 0 + 140735089888762
1 ??? 0x00007fff710a5170 0 + 140735089889648
2 ??? 0x000000011b010492 0 + 4748018834
3 ??? 0x000000011afb8778 0 + 4747659128
4 ??? 0x000000011afb9150 0 + 4747661648
5 ??? 0x000000011afb8cd4 0 + 4747660500
6 ??? 0x000000011b00be07 0 + 4748000775
7 ??? 0x00007fff71168109 0 + 140735090688265
8 ??? 0x00007fff71163b8b 0 + 140735090670475
Thread 18:
0 ??? 0x00007fff71163b68 0 + 140735090670440
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000014 rbx: 0x000000010b6808c0 rcx: 0x00007fff710a7bf6 rdx: 0x0000000000000000
rdi: 0x0000000000000007 rsi: 0x000000010b5d37df rbp: 0x00007fca8d64da60 rsp: 0x00007fca8d64da30
r8: 0x00007fca8d64df48 r9: 0x8e13e354f220998c r10: 0x0000000116651e6c r11: 0x0000000000000206
r12: 0x0000000000000014 r13: 0x000000000000000a r14: 0x000000010b5d37df r15: 0x0000000000000007
rip: 0x000000010b559899 rfl: 0x0000000000010206 cr2: 0x000000010b559899
Logical CPU: 2
Error Code: 0x00000014 (no mapping for user instruction read)
Trap Number: 14
Binary Images:
0 - 0xffffffffffffffff +ChimeraX (???) /private/var/folders/*/ChimeraX-1.3.app/Contents/MacOS/ChimeraX
0x116586000 - 0x116618267 dyld (750.7) /usr/lib/dyld
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 13
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 41032
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=812K resident=0K(0%) swapped_out_or_unallocated=812K(100%)
Writable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 384K 3
Activity Tracing 256K 1
CG backing stores 248K 2
CG image 80K 17
CoreAnimation 72K 15
CoreGraphics 8K 1
CoreImage 20K 4
CoreUI image data 1132K 19
Foundation 4K 1
Kernel Alloc Once 8K 1
MALLOC 424.1M 930
MALLOC guard page 32K 8
MALLOC_LARGE (reserved) 384K 1 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 24K 2
OpenGL GLSL 384K 5
STACK GUARD 72K 18
Stack 129.6M 19
Stack Guard 56.0M 1
VM_ALLOCATE 64.7M 51
__DATA 216K 2
__DATA_CONST 20K 1
__LINKEDIT 224K 1
__TEXT 588K 1
dylib 1944K 22
dylib (reserved) 148K 22 reserved VM address space (unallocated)
mapped file 789.6M 531
shared memory 7544K 42
=========== ======= =======
TOTAL 1.8G 1722
TOTAL, minus reserved VM space 1.4G 1722
===== Log before crash start =====
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> ui tool show ISOLDE
> set selectionWidth 4
Cached rama8000-cispro data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time
Cached rama8000-transpro data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time
Cached rama8000-gly-sym data not found. Regenerating from text file. This is
normal if running ISOLDE for the first time
Cached rama8000-prepro-noGP data not found. Regenerating from text file. This
is normal if running ISOLDE for the first time
Cached rama8000-ileval-nopreP data not found. Regenerating from text file.
This is normal if running ISOLDE for the first time
Cached rama8000-general-noGPIVpreP data not found. Regenerating from text
file. This is normal if running ISOLDE for the first time
Forcefield cache not found or out of date. Regenerating from ffXML files. This
is normal if running ISOLDE for the first time, or after upgrading OpenMM.
Done loading forcefield
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3 (2021-12-08)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 INTEL-14.7.20
OpenGL renderer: Intel(R) HD Graphics 6000
OpenGL vendor: Intel Inc.Hardware:
Hardware Overview:
Model Name: MacBook Air
Model Identifier: MacBookAir7,2
Processor Name: Dual-Core Intel Core i7
Processor Speed: 2.2 GHz
Number of Processors: 1
Total Number of Cores: 2
L2 Cache (per Core): 256 KB
L3 Cache: 4 MB
Hyper-Threading Technology: Enabled
Memory: 8 GB
Boot ROM Version: 428.40.10.0.0
SMC Version (system): 2.27f2
Software:
System Software Overview:
System Version: macOS 10.15.7 (19H1519)
Kernel Version: Darwin 19.6.0
Time since boot: 1 day 18:56
Graphics/Displays:
Intel HD Graphics 6000:
Chipset Model: Intel HD Graphics 6000
Type: GPU
Bus: Built-In
VRAM (Dynamic, Max): 1536 MB
Vendor: Intel
Device ID: 0x1626
Revision ID: 0x0009
Metal: Supported, feature set macOS GPUFamily1 v4
Displays:
Color LCD:
Display Type: LCD
Resolution: 1440 x 900 (Widescreen eXtended Graphics Array Plus)
UI Looks like: 1440 x 900
Framebuffer Depth: 24-Bit Color (ARGB8888)
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.1.1
charset-normalizer: 2.0.9
ChimeraX-AddCharge: 1.2.2
ChimeraX-AddH: 2.1.11
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.31
ChimeraX-AtomicLibrary: 4.2
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6.1
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-Clipper: 0.17.0
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.2
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ISOLDE: 1.3
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0.1
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6.1
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.6.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.8.0
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.3
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.23
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.6
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.3
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.2.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
Change History (4)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash with trashed stack |
comment:2 by , 4 years ago
| Status: | accepted → feedback |
|---|
follow-up: 3 comment:3 by , 4 years ago
Hi Eric I am not sure how this happened. I had just installed version 1.3 and I may have started the older version as well using the Dock icone. If it happens again, I'll try and document the crash report. All the best, Valérie
comment:4 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | feedback → closed |
Hi Valerie,
Thanks for getting back to us. For now, this crash will have to remain a mystery. :-)
--Eric
Note:
See TracTickets
for help on using tickets.
Hi Valerie,
--Eric