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Opened 4 years ago
Closed 4 years ago
#5820 closed defect (can't reproduce)
Crash in event loop
| Reported by: | Owned by: | pett | |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | Core | Version: | |
| Keywords: | Cc: | Tom Goddard | |
| Blocked By: | Blocking: | ||
| Notify when closed: | Platform: | all | |
| Project: | ChimeraX |
Description
The following bug report has been submitted:
Platform: macOS-10.16-x86_64-i386-64bit
ChimeraX Version: 1.3rc202111092148 (2021-11-09 21:48:19 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault
Thread 0x00000003144f1000 (most recent call first):
File "/Applications/ChimeraX-1.3-rc2021.11.09.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 316 in wait
File "/Applications/ChimeraX-1.3-rc2021.11.09.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 574 in wait
File "/Applications/ChimeraX-1.3-rc2021.11.09.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 1284 in run
File "/Applications/ChimeraX-1.3-rc2021.11.09.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 973 in _bootstrap_inner
File "/Applications/ChimeraX-1.3-rc2021.11.09.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/threading.py", line 930 in _bootstrap
Current thread 0x0000000202cece00 (most recent call first):
File "/Applications/ChimeraX-1.3-rc2021.11.09.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/chimerax/ui/gui.py", line 301 in event_loop
File "/Applications/ChimeraX-1.3-rc2021.11.09.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 867 in init
File "/Applications/ChimeraX-1.3-rc2021.11.09.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/site-packages/ChimeraX_main.py", line 1018 in
File "/Applications/ChimeraX-1.3-rc2021.11.09.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 87 in _run_code
File "/Applications/ChimeraX-1.3-rc2021.11.09.app/Contents/Library/Frameworks/Python.framework/Versions/3.9/lib/python3.9/runpy.py", line 197 in _run_module_as_main
Process: ChimeraX [21149]
Path: /Applications/ChimeraX-1.3-rc2021.11.09.app/Contents/MacOS/ChimeraX
Identifier: edu.ucsf.cgl.ChimeraX
Version: 1.3.0 (1.3.0.0)
Code Type: X86-64 (Translated)
Parent Process: ??? [1]
Responsible: ChimeraX [21149]
User ID: 503
Date/Time: 2021-12-20 11:14:44.727 -0800
OS Version: macOS 11.6 (20G165)
Report Version: 12
Anonymous UUID: 99A766B4-EB5F-32AC-5944-54F10CEC65E5
Sleep/Wake UUID: F15F30A5-6FF8-46DE-A40F-0C87D9EF84DC
Time Awake Since Boot: 83000 seconds
Time Since Wake: 5400 seconds
System Integrity Protection: enabled
Crashed Thread: 0 CrBrowserMain Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0xe2e2ffff00000021 -> 0xffffffff00000021 (possible pointer authentication failure)
Exception Note: EXC_CORPSE_NOTIFY
VM Regions Near 0xffffffff00000021:
--> mapped file 7fffe0000000-7fffe2f70000 [ 47.4M] r--/r-- SM=COW Object_id=12482405
Thread 0 Crashed:: CrBrowserMain Dispatch queue: com.apple.main-thread
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2045392e __pthread_kill + 10
2 libsystem_c.dylib 0x00007fff20366bd5 raise + 26
3 libsystem_platform.dylib 0x00007fff204c7d7d _sigtramp + 29
4 ??? 000000000000000000 0 + 0
5 ??? 0x00007ff358259820 ???
Thread 1:: com.apple.rosetta.exceptionserver
0 runtime 0x00007ffdffe5ca28 0x7ffdffe58000 + 18984
1 runtime 0x00007ffdffe61eec 0x7ffdffe58000 + 40684
2 runtime 0x00007ffdffe632c0 0x7ffdffe58000 + 45760
Thread 2:
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044fcde __psynch_cvwait + 10
2 libopenblas.0.dylib 0x000000010c667a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 3:
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044fcde __psynch_cvwait + 10
2 libopenblas.0.dylib 0x000000010c667a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 4:
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044fcde __psynch_cvwait + 10
2 libopenblas.0.dylib 0x000000010c667a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 5:
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044fcde __psynch_cvwait + 10
2 libopenblas.0.dylib 0x000000010c667a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 6:
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044fcde __psynch_cvwait + 10
2 libopenblas.0.dylib 0x000000010c667a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 7:
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044fcde __psynch_cvwait + 10
2 libopenblas.0.dylib 0x000000010c667a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 8:
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044fcde __psynch_cvwait + 10
2 libopenblas.0.dylib 0x000000010c667a9f blas_thread_server + 207
3 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
4 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 9:: ThreadPoolServiceThread
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff204561d2 kevent64 + 10
2 QtWebEngineCore 0x000000012cba9cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000012cb3262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000012caf67cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000012cb3da94 base::internal::ServiceThread::Run(base::RunLoop*) + 20
6 QtWebEngineCore 0x000000012cb51a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 10:: ThreadPoolBackgroundWorker
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012cb9f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012cb47778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012cb48150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000012cb47c44 base::internal::WorkerThread::RunBackgroundPooledWorker() + 20
6 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 11:: Chrome_IOThread
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff204561d2 kevent64 + 10
2 QtWebEngineCore 0x000000012cba9cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000012cb3262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000012caf67cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x0000000130a76f06 content::BrowserProcessSubThread::IOThreadRun(base::RunLoop*) + 102
6 QtWebEngineCore 0x000000012cb51a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 12:: NetworkConfigWatcher
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012cb9f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012cb9f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012cac71db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012cb3262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000012caf67cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000012cb51a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 13:: CompositorTileWorker1
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044fcde __psynch_cvwait + 10
2 QtWebEngineCore 0x000000012cb96e18 base::ConditionVariable::Wait() + 104
3 QtWebEngineCore 0x000000012de4e5f8 non-virtual thunk to cc::SingleThreadTaskGraphRunner::Run() + 56
4 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
5 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
6 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 14:: Chrome_InProcGpuThread
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012cb9f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012cac720f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000012cb3262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x000000012caf67cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x000000012cb51a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 15:: Chrome_ChildIOThread
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff204561d2 kevent64 + 10
2 QtWebEngineCore 0x000000012cba9cc7 base::MessagePumpKqueue::Run(base::MessagePump::Delegate*) + 167
3 QtWebEngineCore 0x000000012cb3262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
4 QtWebEngineCore 0x000000012caf67cb base::RunLoop::Run() + 395
5 QtWebEngineCore 0x000000012cb51a7d base::Thread::ThreadMain() + 413
6 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 16:: NetworkConfigWatcher
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012cb9f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012cb9f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012cac71db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012cb3262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000012caf67cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000012cb51a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 17:: VizCompositorThread
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012cb9f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012cac720f base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 223
4 QtWebEngineCore 0x000000012cb3262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
5 QtWebEngineCore 0x000000012caf67cb base::RunLoop::Run() + 395
6 QtWebEngineCore 0x000000012cb51a7d base::Thread::ThreadMain() + 413
7 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 18:: NetworkConfigWatcher
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012cb9f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012cb9f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012cac71db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012cb3262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000012caf67cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000012cb51a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 19:: ThreadPoolSingleThreadForegroundBlocking0
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012cb9f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012cb9f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012cb4776a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000012cb48150 base::internal::WorkerThread::RunWorker() + 1024
6 QtWebEngineCore 0x000000012cb47d34 base::internal::WorkerThread::RunDedicatedWorker() + 20
7 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 20:: MemoryInfra
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012cb9f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012cb9f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012cac71db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012cb3262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000012caf67cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000012cb51a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 21:: NetworkConfigWatcher
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012cb9f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012cb9f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012cac71db base::MessagePumpDefault::Run(base::MessagePump::Delegate*) + 171
5 QtWebEngineCore 0x000000012cb3262b base::sequence_manager::internal::ThreadControllerWithMessagePumpImpl::Run(bool, base::TimeDelta) + 139
6 QtWebEngineCore 0x000000012caf67cb base::RunLoop::Run() + 395
7 QtWebEngineCore 0x000000012cb51a7d base::Thread::ThreadMain() + 413
8 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
9 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
10 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 22:: com.apple.NSEventThread
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044d2ba mach_msg_trap + 10
2 com.apple.CoreFoundation 0x00007fff2057b215 __CFRunLoopServiceMachPort + 316
3 com.apple.CoreFoundation 0x00007fff205798cb __CFRunLoopRun + 1332
4 com.apple.CoreFoundation 0x00007fff20578cd0 CFRunLoopRunSpecific + 567
5 com.apple.AppKit 0x00007fff22e3223a _NSEventThread + 124
6 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
7 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 23:: ThreadPoolSingleThreadSharedBackgroundBlocking1
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012cb9f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012cb9f2cf base::WaitableEvent::Wait() + 31
4 QtWebEngineCore 0x000000012cb4776a base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 42
5 QtWebEngineCore 0x000000012cb47e3d base::internal::WorkerThread::RunWorker() + 237
6 QtWebEngineCore 0x000000012cb47c74 base::internal::WorkerThread::RunBackgroundSharedWorker() + 20
7 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
8 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
9 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 24:
0 runtime 0x00007ffdffe7a7c8 0x7ffdffe58000 + 141256
Thread 25:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012cb9f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012cb47778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012cb48150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000012cb47cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 26:
0 runtime 0x00007ffdffe7a7c8 0x7ffdffe58000 + 141256
Thread 27:
0 runtime 0x00007ffdffe7a7c8 0x7ffdffe58000 + 141256
Thread 28:
0 runtime 0x00007ffdffe7a7c8 0x7ffdffe58000 + 141256
Thread 29:
0 runtime 0x00007ffdffe7a7c8 0x7ffdffe58000 + 141256
Thread 30:
0 runtime 0x00007ffdffe7a7c8 0x7ffdffe58000 + 141256
Thread 31:
0 runtime 0x00007ffdffe7a7c8 0x7ffdffe58000 + 141256
Thread 32:
0 runtime 0x00007ffdffe7a7c8 0x7ffdffe58000 + 141256
Thread 33:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012cb9f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012cb47778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012cb48150 base::internal::WorkerThread::RunWorker() + 1024
5 QtWebEngineCore 0x000000012cb47cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 34:: ThreadPoolForegroundWorker
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044d2ba mach_msg_trap + 10
2 QtWebEngineCore 0x000000012cb9f492 base::WaitableEvent::TimedWait(base::TimeDelta const&) + 434
3 QtWebEngineCore 0x000000012cb47778 base::internal::WorkerThread::Delegate::WaitForWork(base::WaitableEvent*) + 56
4 QtWebEngineCore 0x000000012cb47e3d base::internal::WorkerThread::RunWorker() + 237
5 QtWebEngineCore 0x000000012cb47cd4 base::internal::WorkerThread::RunPooledWorker() + 20
6 QtWebEngineCore 0x000000012cb9ae07 base::(anonymous namespace)::ThreadFunc(void*) + 87
7 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
8 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 35:
0 runtime 0x00007ffdffe7a7c8 0x7ffdffe58000 + 141256
Thread 36:
0 runtime 0x00007ffdffe7a7c8 0x7ffdffe58000 + 141256
Thread 37:
0 ??? 0x00007ffe946b28f4 ???
1 libsystem_kernel.dylib 0x00007fff2044fcde __psynch_cvwait + 10
2 org.python.python 0x000000010afe4d6c PyThread_acquire_lock_timed + 700
3 org.python.python 0x000000010b033a1f acquire_timed + 111
4 org.python.python 0x000000010b033b30 lock_PyThread_acquire_lock + 48
5 org.python.python 0x000000010aebee54 method_vectorcall_VARARGS_KEYWORDS + 388
6 org.python.python 0x000000010af8e58c call_function + 732
7 org.python.python 0x000000010af8ba92 _PyEval_EvalFrameDefault + 25186
8 org.python.python 0x000000010af8f283 _PyEval_EvalCode + 2611
9 org.python.python 0x000000010aeb68d1 _PyFunction_Vectorcall + 289
10 org.python.python 0x000000010af8e58c call_function + 732
11 org.python.python 0x000000010af8ba92 _PyEval_EvalFrameDefault + 25186
12 org.python.python 0x000000010af8f283 _PyEval_EvalCode + 2611
13 org.python.python 0x000000010aeb68d1 _PyFunction_Vectorcall + 289
14 org.python.python 0x000000010af8e58c call_function + 732
15 org.python.python 0x000000010af8ba92 _PyEval_EvalFrameDefault + 25186
16 org.python.python 0x000000010aeb6948 function_code_fastcall + 104
17 org.python.python 0x000000010af8e58c call_function + 732
18 org.python.python 0x000000010af8ba92 _PyEval_EvalFrameDefault + 25186
19 org.python.python 0x000000010aeb6948 function_code_fastcall + 104
20 org.python.python 0x000000010af8e58c call_function + 732
21 org.python.python 0x000000010af8ba92 _PyEval_EvalFrameDefault + 25186
22 org.python.python 0x000000010aeb6948 function_code_fastcall + 104
23 org.python.python 0x000000010aeb89d2 method_vectorcall + 274
24 org.python.python 0x000000010b0333c6 t_bootstrap + 70
25 org.python.python 0x000000010afe48c9 pythread_wrapper + 25
26 libsystem_pthread.dylib 0x00007fff204828fc _pthread_start + 224
27 libsystem_pthread.dylib 0x00007fff2047e443 thread_start + 15
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x0000000202cece00 rcx: 0x0000000000000000 rdx: 0x0000000000000000
rdi: 0xc431cae70267946a rsi: 0x000000014a967088 rbp: 0xc431cae70267946a rsp: 0x000000014a967088
r8: 0x000000000000000b r9: 0xc431cae70267946a r10: 0x0000000202cece00 r11: 0x00007fff20366bbb
r12: 0x0000000000000103 r13: 0x0000000000000000 r14: 0x000000000000000b r15: 0x0000000000000016
rip: rfl: 0x0000000000000283
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0x7fff31eb0000 - 0x7fff31f25fff com.apple.Rapport (2.6.0 - 260.3) /System/Library/PrivateFrameworks/Rapport.framework/Versions/A/Rapport
0x7fff327fa000 - 0x7fff32846fff com.apple.coreduetcontext (1.0 - 1) /System/Library/PrivateFrameworks/CoreDuetContext.framework/Versions/A/CoreDuetContext
0x7fff32847000 - 0x7fff32db3fff com.apple.Intents (1.0 - 1) /System/Library/Frameworks/Intents.framework/Versions/A/Intents
0x7fff32db4000 - 0x7fff32e17fff com.apple.framework.Apple80211 (17.0 - 1728) /System/Library/PrivateFrameworks/Apple80211.framework/Versions/A/Apple80211
0x7fff32e18000 - 0x7fff32f69fff com.apple.CoreWiFi (3.0 - 341) /System/Library/PrivateFrameworks/CoreWiFi.framework/Versions/A/CoreWiFi
0x7fff32f6a000 - 0x7fff32f84fff com.apple.BackBoardServices (1.0 - 1.0) /System/Library/PrivateFrameworks/BackBoardServices.framework/Versions/A/BackBoardServices
0x7fff32f85000 - 0x7fff32fbcfff com.apple.LDAPFramework (2.4.28 - 194.5) /System/Library/Frameworks/LDAP.framework/Versions/A/LDAP
0x7fff32fbd000 - 0x7fff32fbefff com.apple.TrustEvaluationAgent (2.0 - 35) /System/Library/PrivateFrameworks/TrustEvaluationAgent.framework/Versions/A/TrustEvaluationAgent
0x7fff32fbf000 - 0x7fff330c4fff libcrypto.44.dylib (56.60.2) /usr/lib/libcrypto.44.dylib
0x7fff330c5000 - 0x7fff330f2fff libssl.46.dylib (56.60.2) /usr/lib/libssl.46.dylib
0x7fff330f3000 - 0x7fff331a2fff com.apple.DiskImagesFramework (595.140.1 - 595.140.1) /System/Library/PrivateFrameworks/DiskImages.framework/Versions/A/DiskImages
0x7fff331da000 - 0x7fff331e9fff com.apple.RemoteServiceDiscovery (1.0 - 1.120.1) /System/Library/PrivateFrameworks/RemoteServiceDiscovery.framework/Versions/A/RemoteServiceDiscovery
0x7fff33247000 - 0x7fff3324afff com.apple.help (1.3.8 - 71) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.framework/Versions/A/Help
0x7fff3324b000 - 0x7fff33252fff com.apple.EFILogin (2.0 - 2) /System/Library/PrivateFrameworks/EFILogin.framework/Versions/A/EFILogin
0x7fff33253000 - 0x7fff3325efff libcsfde.dylib (554.140.2) /usr/lib/libcsfde.dylib
0x7fff3325f000 - 0x7fff332c5fff libcurl.4.dylib (121.101.1) /usr/lib/libcurl.4.dylib
0x7fff332c6000 - 0x7fff332cdfff com.apple.LoginUICore (4.0 - 4.0) /System/Library/PrivateFrameworks/LoginUIKit.framework/Versions/A/Frameworks/LoginUICore.framework/Versions/A/LoginUICore
0x7fff332ce000 - 0x7fff33330fff com.apple.AppSupport (1.0.0 - 29) /System/Library/PrivateFrameworks/AppSupport.framework/Versions/A/AppSupport
0x7fff333d0000 - 0x7fff33494fff com.apple.GameController (1.0 - 1) /System/Library/Frameworks/GameController.framework/Versions/A/GameController
0x7fff3349d000 - 0x7fff3349dfff com.apple.ApplicationServices (48 - 50) /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
0x7fff3351a000 - 0x7fff3365efff com.apple.AppleAccount (1.0 - 1.0) /System/Library/PrivateFrameworks/AppleAccount.framework/Versions/A/AppleAccount
0x7fff3365f000 - 0x7fff3369efff com.apple.AppleIDSSOAuthentication (1.0 - 1) /System/Library/PrivateFrameworks/AppleIDSSOAuthentication.framework/Versions/A/AppleIDSSOAuthentication
0x7fff337b2000 - 0x7fff337b2fff libHeimdalProxy.dylib (79) /System/Library/Frameworks/Kerberos.framework/Versions/A/Libraries/libHeimdalProxy.dylib
0x7fff33865000 - 0x7fff33865fff com.apple.audio.units.AudioUnit (1.14 - 1.14) /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x7fff33889000 - 0x7fff338ccfff com.apple.StreamingZip (1.0 - 1) /System/Library/PrivateFrameworks/StreamingZip.framework/Versions/A/StreamingZip
0x7fff338cd000 - 0x7fff338ebfff com.apple.DuetActivityScheduler (1.0 - 1) /System/Library/PrivateFrameworks/DuetActivityScheduler.framework/Versions/A/DuetActivityScheduler
0x7fff33900000 - 0x7fff3390cfff com.apple.IntentsFoundation (1.0 - 1) /System/Library/PrivateFrameworks/IntentsFoundation.framework/Versions/A/IntentsFoundation
0x7fff3390d000 - 0x7fff33912fff com.apple.PushKit (1.0 - 1) /System/Library/Frameworks/PushKit.framework/Versions/A/PushKit
0x7fff33913000 - 0x7fff33946fff com.apple.C2 (1.3 - 573) /System/Library/PrivateFrameworks/C2.framework/Versions/A/C2
0x7fff33947000 - 0x7fff33977fff com.apple.QuickLookThumbnailing (1.0 - 135.5) /System/Library/Frameworks/QuickLookThumbnailing.framework/Versions/A/QuickLookThumbnailing
0x7fff33978000 - 0x7fff34179fff com.apple.vision.EspressoFramework (1.0 - 256.4.4) /System/Library/PrivateFrameworks/Espresso.framework/Versions/A/Espresso
0x7fff3417a000 - 0x7fff34191fff com.apple.ANEServices (4.76 - 4.76) /System/Library/PrivateFrameworks/ANEServices.framework/Versions/A/ANEServices
0x7fff342a6000 - 0x7fff342a8fff com.apple.CoreDuetDebugLogging (1.0 - 1) /System/Library/PrivateFrameworks/CoreDuetDebugLogging.framework/Versions/A/CoreDuetDebugLogging
0x7fff342a9000 - 0x7fff342b5fff com.apple.CoreDuetDaemonProtocol (1.0 - 1) /System/Library/PrivateFrameworks/CoreDuetDaemonProtocol.framework/Versions/A/CoreDuetDaemonProtocol
0x7fff34835000 - 0x7fff34885fff com.apple.ChunkingLibrary (334.1 - 334.1) /System/Library/PrivateFrameworks/ChunkingLibrary.framework/Versions/A/ChunkingLibrary
0x7fff350df000 - 0x7fff350e1fff com.apple.ConstantClasses (1.0 - 1) /System/Library/PrivateFrameworks/ConstantClasses.framework/Versions/A/ConstantClasses
0x7fff350f9000 - 0x7fff3510efff com.apple.CoreML.AppleNeuralEngine (1.0 - 1) /System/Library/PrivateFrameworks/AppleNeuralEngine.framework/Versions/A/AppleNeuralEngine
0x7fff35164000 - 0x7fff351cffff com.apple.audio.midi.CoreMIDI (2.0 - 88) /System/Library/Frameworks/CoreMIDI.framework/Versions/A/CoreMIDI
0x7fff35295000 - 0x7fff35298fff com.apple.Cocoa (6.11 - 23) /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x7fff352e2000 - 0x7fff356d6fff com.apple.AppleMediaServices (1.0 - 1) /System/Library/PrivateFrameworks/AppleMediaServices.framework/Versions/A/AppleMediaServices
0x7fff3570e000 - 0x7fff35b86fff com.apple.MediaRemote (1.0 - 1) /System/Library/PrivateFrameworks/MediaRemote.framework/Versions/A/MediaRemote
0x7fff35e82000 - 0x7fff35e89fff com.apple.DisplayServicesFW (3.1 - 380) /System/Library/PrivateFrameworks/DisplayServices.framework/Versions/A/DisplayServices
0x7fff363c3000 - 0x7fff36657fff libAWDSupportFramework.dylib (4205) /System/Library/PrivateFrameworks/WirelessDiagnostics.framework/Versions/A/Libraries/libAWDSupportFramework.dylib
0x7fff366cb000 - 0x7fff366fbfff libtidy.A.dylib (18.2) /usr/lib/libtidy.A.dylib
0x7fff366fc000 - 0x7fff3671cfff com.apple.MarkupUI (1.0 - 383.6) /System/Library/PrivateFrameworks/MarkupUI.framework/Versions/A/MarkupUI
0x7fff3671d000 - 0x7fff36730fff com.apple.Engram (1.0 - 1) /System/Library/PrivateFrameworks/Engram.framework/Versions/A/Engram
0x7fff36731000 - 0x7fff36754fff com.apple.openscripting (1.7 - 190) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenScripting.framework/Versions/A/OpenScripting
0x7fff36755000 - 0x7fff36758fff com.apple.securityhi (9.0 - 55008) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SecurityHI.framework/Versions/A/SecurityHI
0x7fff36759000 - 0x7fff3675cfff com.apple.ink.framework (10.15 - 227) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.framework/Versions/A/Ink
0x7fff3675d000 - 0x7fff36760fff com.apple.CommonPanels (1.2.6 - 101) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/CommonPanels.framework/Versions/A/CommonPanels
0x7fff36761000 - 0x7fff36768fff com.apple.ImageCapture (1711.5.2 - 1711.5.2) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageCapture.framework/Versions/A/ImageCapture
0x7fff36769000 - 0x7fff37959fff com.apple.JavaScriptCore (16611 - 16611.3.10.1.6) /System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScriptCore
0x7fff379c5000 - 0x7fff37ad7fff com.apple.AVFCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/AVFCapture.framework/Versions/A/AVFCapture
0x7fff37ad8000 - 0x7fff37b6bfff com.apple.Quagga (47 - 47) /System/Library/PrivateFrameworks/Quagga.framework/Versions/A/Quagga
0x7fff37b6c000 - 0x7fff37db6fff com.apple.CMCapture (1.0 - 82.6) /System/Library/PrivateFrameworks/CMCapture.framework/Versions/A/CMCapture
0x7fff387b2000 - 0x7fff387c1fff com.apple.HID (1.0 - 1) /System/Library/PrivateFrameworks/HID.framework/Versions/A/HID
0x7fff387c2000 - 0x7fff388e9fff com.apple.QuickLookUIFramework (5.0 - 928.4) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuickLookUI.framework/Versions/A/QuickLookUI
0x7fff388ea000 - 0x7fff38907fff com.apple.IOGPU (21.11 - 21.11) /System/Library/PrivateFrameworks/IOGPU.framework/Versions/A/IOGPU
0x7fff38d9a000 - 0x7fff38ddafff com.apple.MediaServices (1.0 - 1) /System/Library/PrivateFrameworks/MediaServices.framework/Versions/A/MediaServices
0x7fff38ed6000 - 0x7fff38ed6fff com.apple.marco (10.0 - 1000) /System/Library/PrivateFrameworks/Marco.framework/Versions/A/Marco
0x7fff3958a000 - 0x7fff39591fff com.apple.URLFormatting (146 - 146.22) /System/Library/PrivateFrameworks/URLFormatting.framework/Versions/A/URLFormatting
0x7fff39592000 - 0x7fff395a0fff com.apple.accessibility.AXCoreUtilities (1.0 - 1) /System/Library/PrivateFrameworks/AXCoreUtilities.framework/Versions/A/AXCoreUtilities
0x7fff395a1000 - 0x7fff395b8fff libAccessibility.dylib (2885.49) /usr/lib/libAccessibility.dylib
0x7fff3be4b000 - 0x7fff3bff2fff libFosl_dynamic.dylib (200) /usr/lib/libFosl_dynamic.dylib
0x7fff3bff3000 - 0x7fff3c015fff com.apple.quicklook.QuickLookSupport (1.0 - 135.5) /System/Library/PrivateFrameworks/QuickLookSupport.framework/Versions/A/QuickLookSupport
0x7fff3c016000 - 0x7fff3c0adfff com.apple.AirPlaySync (1.0 - 2780.10) /System/Library/PrivateFrameworks/AirPlaySync.framework/Versions/A/AirPlaySync
0x7fff3cc3e000 - 0x7fff3ccc1fff com.apple.CorePDF (4.0 - 529) /System/Library/PrivateFrameworks/CorePDF.framework/Versions/A/CorePDF
0x7fff3ccc2000 - 0x7fff3ccc5fff com.apple.print.framework.Print (15 - 271) /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.framework/Versions/A/Print
0x7fff3ccc6000 - 0x7fff3ccc9fff com.apple.Carbon (160 - 164) /System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x7fff3cdc2000 - 0x7fff3cdc2fff com.apple.avfoundation (2.0 - 2020.10) /System/Library/Frameworks/AVFoundation.framework/Versions/A/AVFoundation
0x7fff3cf7c000 - 0x7fff3cf9bfff com.apple.private.SystemPolicy (1.0 - 1) /System/Library/PrivateFrameworks/SystemPolicy.framework/Versions/A/SystemPolicy
0x7fff3d0e8000 - 0x7fff3d13efff com.apple.AccessibilitySharedSupport (1.0 - 1) /System/Library/PrivateFrameworks/AccessibilitySharedSupport.framework/Versions/A/AccessibilitySharedSupport
0x7fff3d13f000 - 0x7fff3d15cfff com.apple.sidecar-core (1.0 - 231) /System/Library/PrivateFrameworks/SidecarCore.framework/Versions/A/SidecarCore
0x7fff3d15d000 - 0x7fff3d160fff com.apple.QuickLookNonBaseSystem (1.0 - 1) /System/Library/PrivateFrameworks/QuickLookNonBaseSystem.framework/Versions/A/QuickLookNonBaseSystem
0x7fff3d578000 - 0x7fff3d57efff com.apple.FeatureFlagsSupport (1.0 - 28.60.1) /System/Library/PrivateFrameworks/FeatureFlagsSupport.framework/Versions/A/FeatureFlagsSupport
0x7fff3d6ef000 - 0x7fff3d706fff com.apple.SafariServices.framework (16611 - 16611.3.10.1.6) /System/Library/Frameworks/SafariServices.framework/Versions/A/SafariServices
0x7fff3d8b9000 - 0x7fff3d8c4fff com.apple.MallocStackLogging (1.0 - 1) /System/Library/PrivateFrameworks/MallocStackLogging.framework/Versions/A/MallocStackLogging
0x7fff3d8d9000 - 0x7fff3d8ebfff libmis.dylib (274.140.2) /usr/lib/libmis.dylib
0x7fff3d908000 - 0x7fff3da77fff com.apple.CoreHandwriting (161 - 1.2) /System/Library/PrivateFrameworks/CoreHandwriting.framework/Versions/A/CoreHandwriting
0x7fff3da78000 - 0x7fff3dcd3fff com.apple.imageKit (3.0 - 1100) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/ImageKit.framework/Versions/A/ImageKit
0x7fff3dcd4000 - 0x7fff3ddeafff com.apple.PencilKit (1.0 - 1) /System/Library/Frameworks/PencilKit.framework/Versions/A/PencilKit
0x7fff3ddeb000 - 0x7fff3ddfcfff com.apple.sidecar-ui (1.0 - 231) /System/Library/PrivateFrameworks/SidecarUI.framework/Versions/A/SidecarUI
0x7fff3e41f000 - 0x7fff3e481fff com.apple.ImageCaptureCore (1711.5.2 - 1711.5.2) /System/Library/Frameworks/ImageCaptureCore.framework/Versions/A/ImageCaptureCore
0x7fff3e482000 - 0x7fff3e4a7fff com.apple.quartzfilters (1.10.0 - 98) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzFilters.framework/Versions/A/QuartzFilters
0x7fff3e686000 - 0x7fff3e6f2fff com.apple.Safari.Core (16611 - 16611.3.10.1.6) /System/Library/PrivateFrameworks/SafariCore.framework/Versions/A/SafariCore
0x7fff3e6f3000 - 0x7fff3e855fff com.apple.MediaPlayer (1.0 - 1.0) /System/Library/Frameworks/MediaPlayer.framework/Versions/A/MediaPlayer
0x7fff3e856000 - 0x7fff3eb37fff com.apple.iTunesCloud (1.0 - 1) /System/Library/PrivateFrameworks/iTunesCloud.framework/Versions/A/iTunesCloud
0x7fff3eb63000 - 0x7fff3ec8ffff com.apple.AnnotationKit (1.0 - 383.6) /System/Library/PrivateFrameworks/AnnotationKit.framework/Versions/A/AnnotationKit
0x7fff3ec90000 - 0x7fff3f130fff com.apple.QuartzComposer (5.1 - 383) /System/Library/Frameworks/Quartz.framework/Versions/A/Frameworks/QuartzComposer.framework/Versions/A/QuartzComposer
0x7fff3f131000 - 0x7fff3f219fff com.apple.PDFKit (1.0 - 950.40.3) /System/Library/Frameworks/PDFKit.framework/Versions/A/PDFKit
0x7fff3ff60000 - 0x7fff3ffddfff com.apple.TextInput (1.0 - 1.0) /System/Library/PrivateFrameworks/TextInput.framework/Versions/A/TextInput
0x7fff410e4000 - 0x7fff41113fff libncurses.5.4.dylib (57) /usr/lib/libncurses.5.4.dylib
0x7fff41178000 - 0x7fff4117bfff com.apple.quartzframework (1.5 - 25) /System/Library/Frameworks/Quartz.framework/Versions/A/Quartz
0x7fff415a0000 - 0x7fff415bdfff libCGInterfaces.dylib (544.4) /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/Libraries/libCGInterfaces.dylib
0x7fff43acb000 - 0x7fff43b2afff com.apple.DifferentialPrivacy (1.0 - 1) /System/Library/PrivateFrameworks/DifferentialPrivacy.framework/Versions/A/DifferentialPrivacy
0x7fff43b2b000 - 0x7fff43b44fff com.apple.SafariFoundation (16611 - 16611.3.10.1.6) /System/Library/PrivateFrameworks/SafariFoundation.framework/Versions/A/SafariFoundation
0x7fff43b45000 - 0x7fff43b4bfff com.apple.SafariPlatformSupport.framework (16611 - ???) /System/Library/PrivateFrameworks/SafariPlatformSupport.framework/Versions/A/SafariPlatformSupport
0x7fff43b4c000 - 0x7fff43dbffff com.apple.RawCamera.bundle (9.10.0 - 1450.3) /System/Library/CoreServices/RawCamera.bundle/Contents/MacOS/RawCamera
0x7fff44628000 - 0x7fff4462cfff com.apple.DAAPKit (1.0 - 1) /System/Library/PrivateFrameworks/DAAPKit.framework/Versions/A/DAAPKit
0x7fff45fa3000 - 0x7fff45fa6fff libpmenergy.dylib (227.140.1) /usr/lib/libpmenergy.dylib
0x7fff47cc8000 - 0x7fff47d08fff com.apple.osanalytics.OSAnalytics (1.0 - 1) /System/Library/PrivateFrameworks/OSAnalytics.framework/Versions/A/OSAnalytics
0x7fff48556000 - 0x7fff48571fff com.apple.network.statistics.framework (1.2 - 1) /System/Library/PrivateFrameworks/NetworkStatistics.framework/Versions/A/NetworkStatistics
0x7fff5193e000 - 0x7fff5196bfff com.apple.HelpData (2.3 - 201) /System/Library/PrivateFrameworks/HelpData.framework/Versions/A/HelpData
0x7fff5196c000 - 0x7fff51986fff com.apple.shortcut (2.16 - 118) /System/Library/PrivateFrameworks/Shortcut.framework/Versions/A/Shortcut
0x7fff51987000 - 0x7fff51a26fff com.apple.Symbolication (12.5 - 64544.70.1) /System/Library/PrivateFrameworks/Symbolication.framework/Versions/A/Symbolication
0x7fff51c16000 - 0x7fff51c19fff libpmsample.dylib (227.140.1) /usr/lib/libpmsample.dylib
0x7fff542bd000 - 0x7fff542f3fff com.apple.ReplayKit (1.0 - 1) /System/Library/Frameworks/ReplayKit.framework/Versions/A/ReplayKit
0x7fff558ea000 - 0x7fff558edfff com.apple.ForceFeedback (1.0.6 - 1.0.6) /System/Library/Frameworks/ForceFeedback.framework/Versions/A/ForceFeedback
0x7fff699e6000 - 0x7fff699eafff libmetal_timestamp.dylib (31001.192.1) /System/Library/PrivateFrameworks/GPUCompiler.framework/Versions/31001/Libraries/libmetal_timestamp.dylib
0x7fff6be31000 - 0x7fff6be37fff libCoreFSCache.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreFSCache.dylib
0x7fff6be38000 - 0x7fff6be3cfff libCoreVMClient.dylib (200.11) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff6be3d000 - 0x7fff6be4cfff com.apple.opengl (18.5.9 - 18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff6be4d000 - 0x7fff6be4ffff libCVMSPluginSupport.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCVMSPluginSupport.dylib
0x7fff6be50000 - 0x7fff6be58fff libGFXShared.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGFXShared.dylib
0x7fff6be59000 - 0x7fff6be8cfff libGLImage.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLImage.dylib
0x7fff6be8d000 - 0x7fff6bec9fff libGLU.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff6beca000 - 0x7fff6c05dfff libGLProgrammability.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLProgrammability.dylib
0x7fff6c05e000 - 0x7fff6c068fff libGL.dylib (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff6c069000 - 0x7fff6c1e6fff GLEngine (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLEngine.bundle/GLEngine
0x7fff6c1e7000 - 0x7fff6c20ffff GLRendererFloat (18.5.9) /System/Library/Frameworks/OpenGL.framework/Versions/A/Resources/GLRendererFloat.bundle/GLRendererFloat
0x7fff6d4a8000 - 0x7fff6d500fff com.apple.opencl (4.6 - 4.6) /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL
0x7fff6e5aa000 - 0x7fff6e5b1fff com.apple.agl (3.3.4 - AGL-3.3.3) /System/Library/Frameworks/AGL.framework/Versions/A/AGL
0x7fff6e5b2000 - 0x7fff6e699fff com.apple.audio.AVFAudio (1.0 - 477.88) /System/Library/Frameworks/AVFAudio.framework/Versions/A/AVFAudio
0x7fff6fc1b000 - 0x7fff6fc2dfff com.apple.CMImaging (1.0 - 82.6) /System/Library/PrivateFrameworks/CMImaging.framework/Versions/A/CMImaging
0x7fff73f2b000 - 0x7fff73f36fff com.apple.SymptomAnalytics (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomAnalytics.framework/Versions/A/SymptomAnalytics
0x7fff7414c000 - 0x7fff74164fff com.apple.SymptomPresentationFeed (1.0 - 1431.140.1) /System/Library/PrivateFrameworks/Symptoms.framework/Frameworks/SymptomPresentationFeed.framework/Versions/A/SymptomPresentationFeed
0x7fff77cdc000 - 0x7fff77ce3fff libRosetta.dylib (203.58) /usr/lib/libRosetta.dylib
Translated Code Information:
tmp0: 0xffffffffffffffff tmp1: 0x00007ffe946b28c8 tmp2: 0x00007fff20453924
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=1.2G resident=0K(0%) swapped_out_or_unallocated=1.2G(100%)
Writable regions: Total=17.2G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=17.2G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Accelerate framework 896K 7
Activity Tracing 256K 1
CG backing stores 3264K 6
CG image 5164K 93
CG raster data 2940K 5
CoreAnimation 9128K 133
CoreGraphics 12K 2
CoreImage 12K 1
CoreUI image data 4436K 38
Foundation 16K 1
Kernel Alloc Once 8K 1
MALLOC 15.6G 713
MALLOC guard page 192K 8
MALLOC_MEDIUM (reserved) 584.0M 7 reserved VM address space (unallocated)
MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated)
Mach message 24K 6
OpenGL GLSL 384K 4
Rosetta Arena 4096K 2
Rosetta Generic 1708K 424
Rosetta IndirectBranch 2048K 1
Rosetta JIT 128.0M 1
Rosetta Return Stack 740K 74
Rosetta Thread Context 740K 74
STACK GUARD 40K 10
Stack 169.1M 37
Stack Guard 56.1M 27
VM_ALLOCATE 279.1M 220
VM_ALLOCATE (reserved) 76K 12 reserved VM address space (unallocated)
__DATA 31.0M 606
__DATA_CONST 23.3M 283
__DATA_DIRTY 1297K 187
__FONT_DATA 4K 1
__GLSLBUILTINS 5176K 1
__LINKEDIT 597.8M 156
__OBJC_RO 70.2M 1
__OBJC_RW 2480K 2
__TEXT 583.1M 584
__UNICODE 588K 1
mapped file 4.6G 1023
shared memory 3008K 26
unshared pmap 10.5M 6
=========== ======= =======
TOTAL 23.1G 4786
TOTAL, minus reserved VM space 22.2G 4786
===== Log before crash start =====
UCSF ChimeraX version: 1.3rc202111092148 (2021-11-09)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
> open /Users/pdarosa/60S_ribosome_compare_20211102.cxs format session
Opened cryosparc_P74_J103_class_00_00040_volume_sharp.mrc as #2, grid size
320,320,320, pixel 1.72, shown at level 0.055, step 1, values float32
Opened emd_0948.map as #3, grid size 480,480,480, pixel 1.06, shown at level
0.0628, step 1, values float32
opened ChimeraX session
> hide #!1 models
> show #!1 models
> color #1 silver transparency 0
> color #2 #76d6ff models transparency 0
> color #2 #73fdff models transparency 0
> color #2 #00fdff models transparency 0
> lighting full
> lighting soft
> color #2 #7a81ff models transparency 0
> color zone #2 near #1 distance 10.3
> volume #2 level 0.05
> open /Users/pdarosa/C53_UFL1_DDRGK1.pdb format pdb
Chain information for C53_UFL1_DDRGK1.pdb #5
---
Chain | Description
A | No description available
B | No description available
C | No description available
> hide #!1 models
> hide #!2 models
> show #!1 models
> hide #!1 models
> show #!1 models
> show #!2 models
> select #5
15544 atoms, 15660 bonds, 982 residues, 1 model selected
> ui mousemode right "translate selected models"
> view matrix models #5,1,0,0,385.23,0,1,0,-124.36,0,0,1,244.4
> ~select #5
Nothing selected
> ui mousemode right zoom
> ui mousemode right "rotate selected models"
> select #5
15544 atoms, 15660 bonds, 982 residues, 1 model selected
> view matrix models #5,1,0,0,339.01,0,1,0,79.233,0,0,1,233.27
> view matrix models
> #5,0.9946,-0.10137,0.02205,338.79,0.10353,0.98359,-0.14779,79.606,-0.0067066,0.14927,0.98877,233.54
> view matrix models
> #5,0.9946,-0.10137,0.02205,300.06,0.10353,0.98359,-0.14779,120.72,-0.0067066,0.14927,0.98877,364.2
> view matrix models
> #5,-0.7408,0.081257,0.66679,288.02,-0.65227,-0.32419,-0.68516,109.69,0.16049,-0.94249,0.29316,360.88
> view matrix models
> #5,-0.97596,0.030445,0.21579,284.57,-0.18478,-0.64058,-0.74533,112.65,0.11554,-0.76729,0.63081,361.95
> view matrix models
> #5,-0.87366,0.13428,0.46763,286.44,-0.44169,-0.62195,-0.6466,110.85,0.20402,-0.77146,0.60269,362.59
> view matrix models
> #5,-0.7687,0.21559,0.60218,287.91,-0.5643,-0.6718,-0.47984,110.22,0.3011,-0.70866,0.63807,363.65
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.7687,0.21559,0.60218,248.65,-0.5643,-0.6718,-0.47984,59.947,0.3011,-0.70866,0.63807,399.51
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.94858,-0.2173,0.23016,244.99,0.092308,-0.88543,-0.45552,64.973,0.30278,-0.41085,0.85996,400.9
> view matrix models
> #5,-0.66805,-0.012623,0.74401,249.37,-0.67025,-0.42412,-0.60901,59.263,0.32323,-0.90552,0.27487,398.12
> view matrix models
> #5,-0.84651,-0.52919,0.058191,244.58,0.23252,-0.46583,-0.85378,65.926,0.47892,-0.7092,0.51738,400.62
> view matrix models
> #5,-0.87516,-0.48383,0.0014743,244.27,0.17556,-0.3204,-0.93087,65.564,0.45086,-0.8144,0.36534,399.67
> view matrix models
> #5,-0.87516,-0.48383,0.0014743,238.72,0.17556,-0.3204,-0.93087,94,0.45086,-0.8144,0.36534,430.78
> view matrix models
> #5,-0.82308,-0.51166,0.24645,239.83,0.084114,-0.539,-0.83809,93.002,0.56166,-0.66909,0.48668,432.42
> view matrix models
> #5,-0.80828,-0.5471,0.21765,239.78,-0.10451,-0.23049,-0.96745,91.774,0.57945,-0.80471,0.12912,431.16
> view matrix models
> #5,-0.8362,-0.51877,0.17791,239.5,-0.07506,-0.21308,-0.97415,92.04,0.54326,-0.82793,0.13924,430.83
> view matrix models
> #5,-0.8765,-0.39696,0.27234,239.74,0.17442,-0.78915,-0.58891,93.916,0.44869,-0.46868,0.76093,432.79
> view matrix models
> #5,-0.85863,-0.41089,0.30647,239.96,0.1235,-0.74609,-0.65429,93.396,0.49749,-0.52395,0.69136,432.85
> view matrix models
> #5,-0.80439,-0.41849,0.42169,240.74,-0.074595,-0.63303,-0.77053,91.665,0.5894,-0.65126,0.47799,432.67
> view matrix models
> #5,-0.79973,-0.42455,0.42448,240.77,-0.090122,-0.61413,-0.78404,91.539,0.59355,-0.66528,0.45288,432.59
> view matrix models
> #5,-0.79822,-0.40309,0.44761,240.91,-0.050316,-0.69588,-0.71639,91.882,0.60026,-0.59436,0.53519,433.07
> view matrix models
> #5,-0.77416,-0.43594,0.45894,241.06,-0.1537,-0.57388,-0.80438,91.044,0.61404,-0.69327,0.37727,432.47
> view matrix models
> #5,-0.8389,-0.4111,0.35671,240.27,-0.040544,-0.60636,-0.79416,91.939,0.54277,-0.68068,0.49201,432.25
> view matrix models
> #5,-0.77342,-0.40423,0.48828,241.24,-0.11125,-0.67177,-0.73236,91.384,0.62405,-0.62074,0.47459,433.02
> view matrix models
> #5,-0.78885,-0.41744,0.45107,240.96,-0.12353,-0.61126,-0.78173,91.275,0.60204,-0.67239,0.43063,432.58
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.78885,-0.41744,0.45107,238.9,-0.12353,-0.61126,-0.78173,89.685,0.60204,-0.67239,0.43063,431.52
> view matrix models
> #5,-0.78885,-0.41744,0.45107,247.06,-0.12353,-0.61126,-0.78173,88.433,0.60204,-0.67239,0.43063,427.87
> view matrix models
> #5,-0.78885,-0.41744,0.45107,283.81,-0.12353,-0.61126,-0.78173,91.753,0.60204,-0.67239,0.43063,419.19
> undo
> ui mousemode right zoom
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.78885,-0.41744,0.45107,235.84,-0.12353,-0.61126,-0.78173,86.893,0.60204,-0.67239,0.43063,427.33
> view matrix models
> #5,-0.78885,-0.41744,0.45107,235.83,-0.12353,-0.61126,-0.78173,86.717,0.60204,-0.67239,0.43063,427.06
> ui mousemode right "rotate selected models"
> view matrix models
> #5,-0.79432,-0.42377,0.43529,235.72,-0.12809,-0.5836,-0.80188,86.683,0.59385,-0.6927,0.40928,426.88
> view matrix models
> #5,-0.84965,-0.28089,0.44632,235.63,-0.21203,-0.59297,-0.77681,86.039,0.48285,-0.75465,0.44426,425.92
> view matrix models
> #5,-0.84965,-0.28089,0.44632,233.59,-0.21203,-0.59297,-0.77681,82.502,0.48285,-0.75465,0.44426,421.14
> view matrix models
> #5,-0.84965,-0.28089,0.44632,235.69,-0.21203,-0.59297,-0.77681,86.252,0.48285,-0.75465,0.44426,417.73
> view matrix models
> #5,-0.84965,-0.28089,0.44632,236.25,-0.21203,-0.59297,-0.77681,78.733,0.48285,-0.75465,0.44426,419.55
> view matrix models
> #5,-0.8693,-0.32991,0.36807,235.73,-0.36626,-0.070108,-0.92787,78.234,0.33192,-0.94141,-0.059889,416.32
> ui mousemode right "translate selected models"
> view matrix models
> #5,-0.8693,-0.32991,0.36807,237.34,-0.36626,-0.070108,-0.92787,82.315,0.33192,-0.94141,-0.059889,422.47
> preset "overall look" publication
Preset expands to these ChimeraX commands:
set bg white
graphics silhouettes t
> ui tool show "Measure and Color Blobs"
> ~select #5
Nothing selected
> hide #5 models
> color #2 #7a81ff models transparency 0
> color #2 #7a81ffa3 models
> color #2 #7a81ff9d models
> lighting full
> lighting simple
> graphics silhouettes false
> select #1
139442 atoms, 149926 bonds, 3974 pseudobonds, 11167 residues, 4 models
selected
> ui mousemode right "rotate selected models"
> view matrix models
> #1,0.99956,-0.0036784,-0.029473,-11.052,0.0020885,0.99855,-0.053796,-38.051,0.029628,0.05371,0.99812,83.54
> view matrix models
> #1,0.99956,-0.0036784,-0.029473,-13.588,0.0020885,0.99855,-0.053796,-38.739,0.029628,0.05371,0.99812,82.909
> view matrix models
> #1,0.9988,-0.0069561,-0.048529,-7.6936,0.0045541,0.99877,-0.04943,-40.525,0.048813,0.04915,0.9976,79.411
> undo
> color zone #2 near sel & #1 distance 10.3
> ~select #1
Nothing selected
> hide #!2 models
> select #1/A
1708 atoms, 1736 bonds, 212 residues, 1 model selected
> delete atoms sel
> delete bonds sel
Color zone shortcut requires 1 displayed atomic model and 1 map, got 1 atomic
models, 0 maps.
> show #!2 models
> color zone #2 near #1 distance 10.3
> show #5 models
> select #5
15544 atoms, 15660 bonds, 982 residues, 1 model selected
> view matrix models
> #5,-0.88998,-0.33082,0.31384,237,-0.33107,-0.0045212,-0.9436,82.716,0.31358,-0.94368,-0.1055,422.18
> view matrix models
> #5,-0.90373,-0.29811,0.30725,236.94,-0.3184,-0.011706,-0.94788,82.791,0.28617,-0.95446,-0.084341,421.99
> view matrix models
> #5,-0.90896,-0.28487,0.30438,236.92,-0.31335,-0.014727,-0.94952,82.821,0.27497,-0.95845,-0.075877,421.91
> view matrix models
> #5,-0.89573,-0.42202,0.13987,236.21,-0.04226,-0.23236,-0.97171,84.49,0.44258,-0.87631,0.19029,424.31
> view matrix models
> #5,-0.8659,-0.4709,0.16871,236.43,-0.067792,-0.22369,-0.9723,84.297,0.4956,-0.85335,0.16177,424.72
> view matrix models
> #5,-0.8659,-0.4709,0.16871,233.72,-0.067792,-0.22369,-0.9723,86.436,0.4956,-0.85335,0.16177,420.5
> view matrix models
> #5,-0.8659,-0.4709,0.16871,236.08,-0.067792,-0.22369,-0.9723,89.412,0.4956,-0.85335,0.16177,425.9
> ~select #5
Nothing selected
> select #5
15544 atoms, 15660 bonds, 982 residues, 1 model selected
> view matrix models
> #5,-0.81001,-0.40759,0.4216,237.46,-0.19058,-0.49696,-0.84659,88.123,0.55458,-0.7661,0.32486,427.09
> view matrix models
> #5,-0.89587,-0.19977,0.39687,237.17,-0.27242,-0.45867,-0.84582,87.536,0.351,-0.86586,0.35649,425.26
> view matrix models
> #5,-0.89299,-0.085938,0.44179,237.6,-0.34978,-0.4852,-0.80139,86.965,0.28323,-0.87017,0.40322,424.83
> view matrix models
> #5,-0.89299,-0.085938,0.44179,237.25,-0.34978,-0.4852,-0.80139,90.504,0.28323,-0.87017,0.40322,420.23
> view matrix models
> #5,-0.89299,-0.085938,0.44179,236.97,-0.34978,-0.4852,-0.80139,86.402,0.28323,-0.87017,0.40322,414.22
> view matrix models
> #5,-0.90753,-0.062486,0.41532,236.83,-0.34553,-0.45105,-0.8229,86.453,0.23875,-0.89031,0.38775,413.76
> view matrix models
> #5,-0.84294,-0.25601,0.47319,237.08,-0.21502,-0.64592,-0.7325,87.35,0.49317,-0.7192,0.48943,416.59
> view matrix models
> #5,-0.84405,-0.22503,0.48676,237.19,-0.2316,-0.66571,-0.70936,87.235,0.48367,-0.71147,0.50978,416.59
> view matrix models
> #5,-0.82688,-0.31907,0.4631,237.03,-0.20325,-0.59825,-0.7751,87.432,0.52436,-0.73504,0.42983,416.63
> view matrix models
> #5,-0.82688,-0.31907,0.4631,234.06,-0.20325,-0.59825,-0.7751,84.06,0.52436,-0.73504,0.42983,419.73
> view matrix models
> #5,-0.82688,-0.31907,0.4631,232.33,-0.20325,-0.59825,-0.7751,83.828,0.52436,-0.73504,0.42983,420.92
> view matrix models
> #5,-0.82445,-0.22947,0.51732,232.72,-0.39697,-0.41703,-0.81762,82.519,0.40336,-0.87945,0.25273,419.04
> view matrix models
> #5,-0.82445,-0.22947,0.51732,259.85,-0.39697,-0.41703,-0.81762,51.301,0.40336,-0.87945,0.25273,480.37
> volume #2 level 0.045
> view matrix models
> #5,-0.40615,-0.89206,-0.19819,259.58,0.29335,0.078129,-0.95281,57.807,0.86544,-0.44512,0.22995,485.18
> undo
> lighting flat
> lighting full
> lighting soft
> color #2 #d6d6d6 models transparency 0
> graphics silhouettes false
> lighting full
> lighting soft
> color zone #2 near sel & #5 distance 10.3
> color #2 #76d6ff models transparency 0
> color #2 #73fcd6 models transparency 0
> color #2 #76d6ff models transparency 0
> color #2 #62b0fb models transparency 0
> color #2 #b0fbf1 models transparency 0
> color #2 #b9c8fb models transparency 0
> color #2 #acc2fb models transparency 0
> color #2 #b0ccfb models transparency 0
> color #2 #fbcfa6 models transparency 0
> color #2 #fba49f models transparency 0
> color zone #2 near sel & #5 distance 10.3
> select #2
2 models selected
Color zone shortcut requires 1 displayed atomic model and 1 map, got 2 atomic
models, 1 maps.
> hide #5 models
> color zone #2 near #1 distance 10.3
> volume #2 level 0.047
> volume #2 level 0.046
> volume #2 level 0.048
> volume #2 step 2
> volume #2 step 1
> color #1 #cbc1c8 transparency 0
> color #1 #cbc0bc transparency 0
> color #1 #b4becb transparency 0
> color zone #2 near #1 distance 10.3
> ui tool show "Color Zone"
> color zone #2 near #1 distance 1.72
> color zone #2 near #1 distance 2.53
> color zone #2 near #1 distance 3.71
> color zone #2 near #1 distance 6.59
> color zone #2 near #1 distance 20.54
> color zone #2 near #1 distance 17.46
> color zone #2 near #1 distance 15
> 5
Unknown command: 5
> color zone #2 near #1 distance 16
> color zone #2 near #1 distance 17
> view matrix models
> #2,-0.96324,-0.26858,0.0057418,573.43,0.24746,-0.87878,0.40806,239.71,-0.10455,0.39448,0.91294,22.265
> undo
> ui mousemode right zoom
> ui mousemode right select
> select clear
> select #2
2 models selected
> ui mousemode right select
> select clear
> ui mousemode right zoom
> show #!3 models
> hide #!3 models
> show #!3 models
> hide #!3 models
> show #!4 models
> hide #!4 models
> open /Users/pdarosa/6sv4.cif
6sv4.cif title:
The cryo-EM structure of SDD1-stalled collided trisome. [more info...]
Chain information for 6sv4.cif #6
---
Chain | Description | UniProt
2 2b 2c | 18S rRNA |
A Ab Ac | 40S ribosomal protein S3 | RS3_YEAST
AA XA zA | 60S ribosomal protein L8-A | RL8A_YEAST
AB XB zB | 60S ribosomal protein L23-A | RL23A_YEAST
AC XC zC | 60S ribosomal protein L36-A | RL36A_YEAST
AD XD zD | 60S ribosomal protein L9-A | RL9A_YEAST
AE XE zE | 60S ribosomal protein L24-A | RL24A_YEAST
AF XF zF | 60S ribosomal protein L37-A | RL37A_YEAST
AG XG zG | 60S ribosomal protein L11-A | RL11A_YEAST
AH XH zH | 60S ribosomal protein L25 | RL25_YEAST
AI XI zI | 60S ribosomal protein L38 | RL38_YEAST
AJ XJ zJ | 60S ribosomal protein L13-A | RL13A_YEAST
AK XK zK | 60S ribosomal protein L26-A | RL26A_YEAST
AL XL zL | 60S ribosomal protein L39 | RL39_YEAST
AM XM zM | 60S ribosomal protein L14-A | RL14A_YEAST
AN XN zN | 60S ribosomal protein L27-A | RL27A_YEAST
AO XO zO | Ubiquitin-60S ribosomal protein L40 | RL40A_YEAST
AP XP zP | 60S ribosomal protein L42-A | RL44A_YEAST
AQ XQ zQ | 60S ribosomal protein L15-A | RL15A_YEAST
AR XR zR | 60S ribosomal protein L28 | RL28_YEAST
AS XS zS | 60S ribosomal protein L41-B |
AT XT zT | 60S ribosomal protein L43-A | RL43A_YEAST
AU XU zU | 60S ribosomal protein L16-A | RL16A_YEAST
AV XV zV | 60S ribosomal protein L29 | RL29_YEAST
AW XW zW | 60S ribosomal protein L2-A | RL2A_YEAST
AX XX zX | 60S ribosomal protein L17-A | RL17A_YEAST
AY XY zY | 60S ribosomal protein L30 | RL30_YEAST
B Bb Bc | Rps5p | A0A1L4AA68_YEASX
BA YA ZA | 60S ribosomal protein L3 | RL3_YEAST
BB YB ZB | 60S ribosomal protein L18-A | RL18A_YEAST
BC YC ZC | 60S ribosomal protein L31-A | RL31A_YEAST
BD YD ZD | 60S ribosomal protein L10 | RL10_YEAST
BE YE ZE | 60S ribosomal protein L4-A | RL4A_YEAST
BF YF ZF | 60S ribosomal protein L19-A | RL19A_YEAST
BG YG ZG | 60S ribosomal protein L32 | RL32_YEAST
BH YH ZH | 60S ribosomal protein L20-A | RL20A_YEAST
BI YI ZI | 60S ribosomal protein L5 | RL5_YEAST
BJ YJ ZJ | 60S ribosomal protein L21-A | RL21A_YEAST
BK YK ZK | 60S ribosomal protein L33-A | RL33A_YEAST
BL YL ZL | 60S ribosomal protein L22-A | RL22A_YEAST
BM YM ZM | 60S ribosomal protein L6-A | RL6A_YEAST
BN YN ZN | 60S ribosomal protein L34-A | RL34A_YEAST
BO YO ZO | 60S ribosomal protein L7-A | RL7A_YEAST
BP YP ZP | 60S ribosomal protein L35-A | RL35A_YEAST
BQ YQ ZQ | 25S rRNA |
BR YR ZR | 5S rRNA |
BS YS ZS | 5.8S rRNA |
BU YU ZU | 60S acidic ribosomal protein P0 | RLA0_YEAST
C Cb Cc | 40S ribosomal protein S10-A | RS10A_YEAST
D Db Dc | 40S ribosomal protein S12 | RS12_YEAST
E Eb Ec | 40S ribosomal protein S15 | RS15_YEAST
F Fb Fc | 40S ribosomal protein S16-A | RS16A_YEAST
G Gb Gc | 40S ribosomal protein S17-B | RS17B_YEAST
H Hb Hc | 40S ribosomal protein S18-A | RS18A_YEAST
I Ib Ic | 40S ribosomal protein S19-A | RS19A_YEAST
J Jb Jc | 40S ribosomal protein S20 | RS20_YEAST
K Kb Kc | 40S ribosomal protein S25-A | RS25A_YEAST
L Lb Lc | 40S ribosomal protein S28-B | RS28B_YEAST
M Mb Mc | 40S ribosomal protein S29-A | RS29A_YEAST
N Nb Nc | Ubiquitin-40S ribosomal protein S31 | RS31_YEAST
O Ob Oc | Guanine nucleotide-binding protein subunit beta-like protein |
GBLP_YEAST
P Pb Pc | 40S ribosomal protein S0-A | RSSA1_YEAST
Q Qb Qc | 40S ribosomal protein S1-A | RS3A1_YEAST
R Rb Rc | 40S ribosomal protein S2 | RS2_YEAST
S Sb Sc | 40S ribosomal protein S4-A | RS4A_YEAST
T Tb Tc | 40S ribosomal protein S6-A | RS6A_YEAST
U Ub Uc | 40S ribosomal protein S7-A | RS7A_YEAST
V Vb Vc | 40S ribosomal protein S8-A | RS8A_YEAST
W Wb Wc | 40S ribosomal protein S9-A | RS9A_YEAST
X Xb Xc | 40S ribosomal protein S11-A | RS11A_YEAST
Y Yb Yc | 40S ribosomal protein S13 | RS13_YEAST
Z Zb Zc | 40S ribosomal protein S14-A | RS14A_YEAST
a ab ac | 40S ribosomal protein S21-A | RS21A_YEAST
b bb bc | 40S ribosomal protein S22-A | RS22A_YEAST
c cb cc | 40S ribosomal protein S23-A | RS23A_YEAST
d db dc | 40S ribosomal protein S24-A | RS24A_YEAST
e eb ec | 40S ribosomal protein S26-A | RS26A_YEAST
f fb fc | 40S ribosomal protein S27-A | RS27A_YEAST
g gb gc | 40S ribosomal protein S30-A | RS30A_YEAST
mb mc | tRNA (P/E) |
n | tRNA (P/P) |
nb nc | tRNA (A/P) |
> hide #!1 models
> select #6
605489 atoms, 650410 bonds, 14704 pseudobonds, 49607 residues, 3 models
selected
> ui mousemode right "translate selected models"
> view matrix models #6,1,0,0,-103.39,0,1,0,-34.724,0,0,1,92.464
> close #6
> color zone #2 near #1 distance 15
> volume splitbyzone #2
Opened cryosparc_P74_J103_class_00_00040_volume_sharp.mrc 0 as #6.1, grid size
320,320,320, pixel 1.72, shown at level 0.048, step 1, values float32
Opened cryosparc_P74_J103_class_00_00040_volume_sharp.mrc 1 as #6.2, grid size
320,320,320, pixel 1.72, shown at level 0.048, step 1, values float32
> surface dust #6.1 size 17.2
> surface dust #6.2 size 17.2
> volume #6.1 color #16f3e8
> volume #6.1 color #5bbbf3
> close #3
Drag select of 6.1 cryosparc_P74_J103_class_00_00040_volume_sharp.mrc 0
> select #6
5 models selected
> ~select #6
Nothing selected
> undo
Undo failed, probably because structures have been modified.
> open /Users/pdarosa/60S_ribosome_compare_20211102.cxs format session
Opened cryosparc_P74_J103_class_00_00040_volume_sharp.mrc as #2, grid size
320,320,320, pixel 1.72, shown at level 0.055, step 1, values float32
Opened emd_0948.map as #3, grid size 480,480,480, pixel 1.06, shown at level
0.0628, step 1, values float32
opened ChimeraX session
===== Log before crash end =====
Log:
UCSF ChimeraX version: 1.3rc202111092148 (2021-11-09)
© 2016-2021 Regents of the University of California. All rights reserved.
How to cite UCSF ChimeraX
OpenGL version: 4.1 Metal - 71.7.1
OpenGL renderer: Apple M1
OpenGL vendor: AppleHardware:
Hardware Overview:
Model Name: MacBook Pro
Model Identifier: MacBookPro17,1
Processor Name: Unknown
Processor Speed: 2.4 GHz
Number of Processors: 1
Total Number of Cores: 8
L2 Cache (per Core): 4 MB
Memory: 16 GB
Software:
System Software Overview:
System Version: macOS 11.6 (20G165)
Kernel Version: Darwin 20.6.0
Time since boot: 4 days 14:55
Graphics/Displays:
Apple M1:
Chipset Model: Apple M1
Type: GPU
Bus: Built-In
Total Number of Cores: 8
Vendor: Apple (0x106b)
Metal Family: Supported, Metal GPUFamily Apple 7
Displays:
Color LCD:
Resolution: 2880 x 1800
UI Looks like: 1440 x 900 @ 60.00Hz
Main Display: Yes
Mirror: Off
Online: Yes
Automatically Adjust Brightness: No
Connection Type: Internal
Locale: (None, 'UTF-8')
PyQt5 5.15.2, Qt 5.15.2
Installed Packages:
alabaster: 0.7.12
appdirs: 1.4.4
appnope: 0.1.2
Babel: 2.9.1
backcall: 0.2.0
blockdiag: 2.0.1
certifi: 2021.5.30
cftime: 1.5.1.1
charset-normalizer: 2.0.7
ChimeraX-AddCharge: 1.1.5
ChimeraX-AddH: 2.1.10
ChimeraX-AlignmentAlgorithms: 2.0
ChimeraX-AlignmentHdrs: 3.2
ChimeraX-AlignmentMatrices: 2.0
ChimeraX-Alignments: 2.2.3
ChimeraX-AlphaFold: 1.0
ChimeraX-AltlocExplorer: 1.0.1
ChimeraX-AmberInfo: 1.0
ChimeraX-Arrays: 1.0
ChimeraX-Atomic: 1.30.2
ChimeraX-AtomicLibrary: 4.1.5
ChimeraX-AtomSearch: 2.0
ChimeraX-AtomSearchLibrary: 1.0
ChimeraX-AxesPlanes: 2.0
ChimeraX-BasicActions: 1.1
ChimeraX-BILD: 1.0
ChimeraX-BlastProtein: 2.0
ChimeraX-BondRot: 2.0
ChimeraX-BugReporter: 1.0
ChimeraX-BuildStructure: 2.6
ChimeraX-Bumps: 1.0
ChimeraX-BundleBuilder: 1.1
ChimeraX-ButtonPanel: 1.0
ChimeraX-CageBuilder: 1.0
ChimeraX-CellPack: 1.0
ChimeraX-Centroids: 1.2
ChimeraX-ChemGroup: 2.0
ChimeraX-Clashes: 2.2.2
ChimeraX-ColorActions: 1.0
ChimeraX-ColorGlobe: 1.0
ChimeraX-ColorKey: 1.5
ChimeraX-CommandLine: 1.1.5
ChimeraX-ConnectStructure: 2.0
ChimeraX-Contacts: 1.0
ChimeraX-Core: 1.3rc202111092148
ChimeraX-CoreFormats: 1.1
ChimeraX-coulombic: 1.3.1
ChimeraX-Crosslinks: 1.0
ChimeraX-Crystal: 1.0
ChimeraX-CrystalContacts: 1.0
ChimeraX-DataFormats: 1.2.2
ChimeraX-Dicom: 1.0
ChimeraX-DistMonitor: 1.1.5
ChimeraX-DistUI: 1.0
ChimeraX-Dssp: 2.0
ChimeraX-EMDB-SFF: 1.0
ChimeraX-ExperimentalCommands: 1.0
ChimeraX-FileHistory: 1.0
ChimeraX-FunctionKey: 1.0
ChimeraX-Geometry: 1.1
ChimeraX-gltf: 1.0
ChimeraX-Graphics: 1.1
ChimeraX-Hbonds: 2.1.2
ChimeraX-Help: 1.2
ChimeraX-HKCage: 1.3
ChimeraX-IHM: 1.1
ChimeraX-ImageFormats: 1.2
ChimeraX-IMOD: 1.0
ChimeraX-IO: 1.0.1
ChimeraX-ItemsInspection: 1.0
ChimeraX-Label: 1.1
ChimeraX-ListInfo: 1.1.1
ChimeraX-Log: 1.1.4
ChimeraX-LookingGlass: 1.1
ChimeraX-Maestro: 1.8.1
ChimeraX-Map: 1.1
ChimeraX-MapData: 2.0
ChimeraX-MapEraser: 1.0
ChimeraX-MapFilter: 2.0
ChimeraX-MapFit: 2.0
ChimeraX-MapSeries: 2.1
ChimeraX-Markers: 1.0
ChimeraX-Mask: 1.0
ChimeraX-MatchMaker: 2.0.4
ChimeraX-MDcrds: 2.6
ChimeraX-MedicalToolbar: 1.0.1
ChimeraX-Meeting: 1.0
ChimeraX-MLP: 1.1
ChimeraX-mmCIF: 2.4
ChimeraX-MMTF: 2.1
ChimeraX-Modeller: 1.2.6
ChimeraX-ModelPanel: 1.2.1
ChimeraX-ModelSeries: 1.0
ChimeraX-Mol2: 2.0
ChimeraX-Morph: 1.0
ChimeraX-MouseModes: 1.1
ChimeraX-Movie: 1.0
ChimeraX-Neuron: 1.0
ChimeraX-Nucleotides: 2.0.2
ChimeraX-OpenCommand: 1.7
ChimeraX-PDB: 2.6.5
ChimeraX-PDBBio: 1.0
ChimeraX-PDBLibrary: 1.0.2
ChimeraX-PDBMatrices: 1.0
ChimeraX-PickBlobs: 1.0
ChimeraX-Positions: 1.0
ChimeraX-PresetMgr: 1.0.1
ChimeraX-PubChem: 2.1
ChimeraX-ReadPbonds: 1.0
ChimeraX-Registration: 1.1
ChimeraX-RemoteControl: 1.0
ChimeraX-ResidueFit: 1.0
ChimeraX-RestServer: 1.1
ChimeraX-RNALayout: 1.0
ChimeraX-RotamerLibMgr: 2.0.1
ChimeraX-RotamerLibsDunbrack: 2.0
ChimeraX-RotamerLibsDynameomics: 2.0
ChimeraX-RotamerLibsRichardson: 2.0
ChimeraX-SaveCommand: 1.5
ChimeraX-SchemeMgr: 1.0
ChimeraX-SDF: 2.0
ChimeraX-Segger: 1.0
ChimeraX-Segment: 1.0
ChimeraX-SelInspector: 1.0
ChimeraX-SeqView: 2.4.6
ChimeraX-Shape: 1.0.1
ChimeraX-Shell: 1.0
ChimeraX-Shortcuts: 1.1
ChimeraX-ShowAttr: 1.0
ChimeraX-ShowSequences: 1.0
ChimeraX-SideView: 1.0
ChimeraX-Smiles: 2.1
ChimeraX-SmoothLines: 1.0
ChimeraX-SpaceNavigator: 1.0
ChimeraX-StdCommands: 1.6
ChimeraX-STL: 1.0
ChimeraX-Storm: 1.0
ChimeraX-Struts: 1.0
ChimeraX-Surface: 1.0
ChimeraX-SwapAA: 2.0
ChimeraX-SwapRes: 2.1
ChimeraX-TapeMeasure: 1.0
ChimeraX-Test: 1.0
ChimeraX-Toolbar: 1.1
ChimeraX-ToolshedUtils: 1.2
ChimeraX-Tug: 1.0
ChimeraX-UI: 1.13.7
ChimeraX-uniprot: 2.2
ChimeraX-UnitCell: 1.0
ChimeraX-ViewDockX: 1.0.1
ChimeraX-VIPERdb: 1.0
ChimeraX-Vive: 1.1
ChimeraX-VolumeMenu: 1.0
ChimeraX-VTK: 1.0
ChimeraX-WavefrontOBJ: 1.0
ChimeraX-WebCam: 1.0
ChimeraX-WebServices: 1.0
ChimeraX-Zone: 1.0
colorama: 0.4.4
cxservices: 1.1
cycler: 0.11.0
Cython: 0.29.24
decorator: 5.1.0
docutils: 0.17.1
filelock: 3.0.12
funcparserlib: 0.3.6
grako: 3.16.5
h5py: 3.5.0
html2text: 2020.1.16
idna: 3.3
ihm: 0.21
imagecodecs: 2021.4.28
imagesize: 1.3.0
ipykernel: 5.5.5
ipython: 7.23.1
ipython-genutils: 0.2.0
jedi: 0.18.0
Jinja2: 3.0.1
jupyter-client: 6.1.12
jupyter-core: 4.9.1
kiwisolver: 1.3.2
lxml: 4.6.3
lz4: 3.1.3
MarkupSafe: 2.0.1
matplotlib: 3.4.3
matplotlib-inline: 0.1.3
msgpack: 1.0.2
netCDF4: 1.5.7
networkx: 2.6.3
numexpr: 2.7.3
numpy: 1.21.2
openvr: 1.16.801
packaging: 21.0
ParmEd: 3.2.0
parso: 0.8.2
pexpect: 4.8.0
pickleshare: 0.7.5
Pillow: 8.3.2
pip: 21.2.4
pkginfo: 1.7.1
prompt-toolkit: 3.0.22
psutil: 5.8.0
ptyprocess: 0.7.0
pycollada: 0.7.1
pydicom: 2.1.2
Pygments: 2.10.0
PyOpenGL: 3.1.5
PyOpenGL-accelerate: 3.1.5
pyparsing: 3.0.5
PyQt5-commercial: 5.15.2
PyQt5-sip: 12.8.1
PyQtWebEngine-commercial: 5.15.2
python-dateutil: 2.8.2
pytz: 2021.3
pyzmq: 22.3.0
qtconsole: 5.1.1
QtPy: 1.11.2
RandomWords: 0.3.0
requests: 2.26.0
scipy: 1.7.1
setuptools: 57.5.0
sfftk-rw: 0.7.1
six: 1.16.0
snowballstemmer: 2.1.0
sortedcontainers: 2.4.0
Sphinx: 4.2.0
sphinx-autodoc-typehints: 1.12.0
sphinxcontrib-applehelp: 1.0.2
sphinxcontrib-blockdiag: 2.0.0
sphinxcontrib-devhelp: 1.0.2
sphinxcontrib-htmlhelp: 2.0.0
sphinxcontrib-jsmath: 1.0.1
sphinxcontrib-qthelp: 1.0.3
sphinxcontrib-serializinghtml: 1.1.5
suds-jurko: 0.6
tifffile: 2021.4.8
tinyarray: 1.2.3
tornado: 6.1
traitlets: 5.1.1
urllib3: 1.26.7
wcwidth: 0.2.5
webcolors: 1.11.1
wheel: 0.37.0
wheel-filename: 1.3.0
Change History (2)
comment:1 by , 4 years ago
| Cc: | added |
|---|---|
| Component: | Unassigned → Core |
| Owner: | set to |
| Platform: | → all |
| Project: | → ChimeraX |
| Status: | new → accepted |
| Summary: | ChimeraX bug report submission → Crash in event loop |
comment:2 by , 4 years ago
| Resolution: | → can't reproduce |
|---|---|
| Status: | accepted → closed |
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