![[ChimeraX Issue Tracking System]](/trac/ChimeraX/chrome/site/ChimeraX-icon.svg){kind=icon}
Timeline
Jul 2, 2020:
- 3:52 PM Ticket #3476 (Problems reporting Toolshed updates available) created by
- Two problems with the toolshed update mechanism: 1) It is reporting …
- 3:50 PM Ticket #3463 (map jumps during mouse rotation / bad toolshed reporting) closed by
- fixed: Fixed. When using Mac trackpad multifinger drags I sometimes observed …
- 2:09 PM Ticket #3313 ("Vestigial" ViewDockX can interfere with session restore) closed by
- fixed: Uploaded the 1.7 version to the Toolshed.
- 1:57 PM Ticket #1321 ("binary" bundles) closed by
- duplicate: Now covered by ticket #3354
- 1:54 PM Ticket #2701 (handle sub packages split between user and app install areas) closed by
- duplicate: This is now covered by ticket #3353
- 1:17 PM Ticket #3475 (Move toolshed update notification into bundle) created by
- The user notification of available bundle updates needs to be moved …
- 12:58 PM Ticket #3474 (windows intel graphics driver is fixed) closed by
- fixed: Fixed by limiting fix to 6708 < build < 8280.
- 12:56 PM Ticket #3474 (windows intel graphics driver is fixed) created by
- Intel graphics driver 8280 fixes the problems with Qt, and our …
- 12:48 PM Ticket #3473 (Plugin to Ligand Expo) created by
- Would be really nice to have an interface to the Ligand-Expo (and/or …
- 11:53 AM Ticket #3469 (_resize_dock_widget: 'QDockWidget' object has no attribute 'resizeDocks) closed by
- fixed
- 11:53 AM Ticket #3469 (_resize_dock_widget: 'QDockWidget' object has no attribute 'resizeDocks) reopened by
- 11:53 AM Ticket #3469 (_resize_dock_widget: 'QDockWidget' object has no attribute 'resizeDocks) closed by
- can't reproduce: The user deleted a map and then tried to fit it into a segment. The …
- 11:17 AM Ticket #3468 (Crash saving STL of large structure + surfaces) closed by
- fixed: Fixed. The crash is because the STL writer was not handling files …
- 10:39 AM Ticket #3472 (Crash in graphics driver) closed by
- nonchimerax
- 10:27 AM Ticket #3470 (Crash in shader?) closed by
- nonchimerax: Crash in Apple graphics driver on 2012 iMac with NVIDIA GeForce GTX …
- 9:51 AM Ticket #3467 (Crash in graphics driver) closed by
- nonchimerax: The Apple graphics driver crashed with error message "Graphics …
- 7:35 AM Ticket #3472 (Crash in graphics driver) created by
- […]
- 5:38 AM Ticket #3471 (Probable memory corruption) created by
- […]
- 4:50 AM Ticket #3470 (Crash in shader?) created by
- […]
Jul 1, 2020:
- 10:57 PM Ticket #3469 (_resize_dock_widget: 'QDockWidget' object has no attribute 'resizeDocks) created by
- […]
- 2:36 PM Ticket #3468 (Crash saving STL of large structure + surfaces) created by
- […]
- 2:09 PM Ticket #3467 (Crash in graphics driver) created by
- […]
- 12:51 PM Ticket #3466 ('OpenMM_Thread_Handler' object has no attribute '_c_pointer') created by
- […]
- 12:27 PM ChangeLog edited by
- (diff)
- 11:15 AM Ticket #3464 (partial surface mesh) closed by
- fixed: Generated style command now includes the surface model.
- 9:44 AM Ticket #3465 (tape measure to surface crashes) created by
- […]
- 9:40 AM Ticket #3462 (clashes: 'dict_values' object has no attribute 'sort') closed by
- fixed
- 9:33 AM Ticket #3461 (Crash in QMainWindow::removeDockWidget) closed by
- can't reproduce: Another possible instance of closing a dialog over a frozen "drop …
- 9:05 AM Ticket #3464 (partial surface mesh) created by
- […]
- 6:20 AM Ticket #3463 (map jumps during mouse rotation / bad toolshed reporting) created by
- […]
Jun 30, 2020:
- 10:24 PM Ticket #3462 (clashes: 'dict_values' object has no attribute 'sort') created by
- […]
- 8:49 PM Ticket #3461 (Crash in QMainWindow::removeDockWidget) created by
- […]
- 6:10 PM Ticket #3460 (Atom-spec parser slow and possibly leaks memory) created by
- From chimera-users list: I'm testing driving ChimeraX (or Chimera) …
- 5:27 PM Ticket #3459 (VR error on button press: NoneType' object has no attribute 'inverse') closed by
- fixed: Fixed. When a mouse mode gets a VR hand event and called event.motion …
- 4:55 PM Ticket #3458 (Move picked models VR mode broken) closed by
- fixed: Fixed. Move picked models had never been tested in VR. Needed some …
- 4:54 PM Ticket #3459 (VR error on button press: NoneType' object has no attribute 'inverse') created by
- […]
- 4:34 PM Ticket #3458 (Move picked models VR mode broken) created by
- […]
- 3:55 PM Ticket #3457 (tape-measure mouse mode using dead MarkerSet) closed by
- fixed: Fixed. Tape measure marker set was closed. Subsequent measurements …
- 11:26 AM Ticket #3456 (Crash in QMainWindow::removeDockWidget) closed by
- can't reproduce: Elaine reported basically the same thing. The scenario was that she …
- 10:16 AM Ticket #3457 (tape-measure mouse mode using dead MarkerSet) created by
- […]
- 9:48 AM ChangeLog edited by
- (diff)
- 9:42 AM Ticket #3456 (Crash in QMainWindow::removeDockWidget) created by
- […]
- 8:39 AM ChangeLog edited by
- (diff)
Jun 29, 2020:
- 10:35 PM Ticket #3453 (Changing id number of model with submodels broken) closed by
- fixed: Fixed. Changing model id to be child of another model did not add it …
- 8:45 PM Ticket #3455 (Session restore does not show surfaces) closed by
- fixed: Fixed. Made Drawing reset cached _displayed_scene_positions when any …
- 8:42 PM Ticket #3455 (Session restore does not show surfaces) created by
- […]
- 5:18 PM ChangeLog edited by
- (diff)
- 5:15 PM Ticket #3259 (Saved tool positions not preserving tabbing) closed by
- fixed: Fix available in next daily, and am shooting for having it on the …
- 2:09 PM Ticket #3454 (Volume backing color wrong position if volume moved) closed by
- fixed: Fixed. Backing color was always being positioned as if position was …
- 1:59 PM Ticket #3454 (Volume backing color wrong position if volume moved) created by
- […]
- 11:48 AM Ticket #3432 (Atoms.transform trigger) closed by
- fixed: Okay, pushed an (untested) code change. Let me know if there's …
- 11:32 AM Ticket #3453 (Changing id number of model with submodels broken) created by
- […]
- 9:21 AM Ticket #3452 (ISOLDE's self.selected_model is dead) closed by
- duplicate: duplicate of #3451
- 2:16 AM Ticket #3452 (ISOLDE's self.selected_model is dead) created by
- […]
- 2:15 AM Ticket #3451 (ISOLDE's self.selected_model is dead) created by
- […]
Jun 27, 2020:
- 3:55 PM Ticket #3443 (Registration error: 'year' is an invalid keyword argument for __new__()) closed by
-
fixed: Fixed in a824e555a.
Not
timedelta(year=1); it's …
Jun 26, 2020:
- 5:52 PM Ticket #3449 (Tried creating the same named 2dlabel twice) closed by
- duplicate: Duplicate of #3447. Fixed.
- 5:50 PM Ticket #3448 (ChimeraX bug report submission) closed by
- not a bug
- 5:48 PM Ticket #3450 (Re: [chimerax-users] Converting Chimera movie script) closed by
- not a bug
- 5:38 PM Ticket #3450 (Re: [chimerax-users] Converting Chimera movie script) created by
- […]
- 5:28 PM Ticket #3449 (Tried creating the same named 2dlabel twice) created by
- […]
- 5:21 PM Ticket #3447 (2D label errors) closed by
- fixed: Fixed. The code now gives a simple error and not a traceback when you …
- 3:50 PM Ticket #3448 (ChimeraX bug report submission) created by
- […] clip2.cxc
- 10:11 AM Ticket #3444 (crash when closing Rotamers dialog) closed by
- can't reproduce: Qt must have gotten into a weird state with that docked / not docked …
- 9:59 AM Ticket #3447 (2D label errors) created by
- Begin forwarded message: From: Lukas Kater Subject: Re: …
- 9:54 AM Ticket #3445 (Crash updating offscreen OpenGL) closed by
- can't reproduce: This is a Qt window toolkit crash with error "CGSGetSurfaceBounds …
- 9:11 AM Ticket #3446 (mmCIF extremely slow when RCSB Ligand-expo site is down) created by
- […]
Jun 25, 2020:
- 4:50 PM Ticket #3445 (Crash updating offscreen OpenGL) created by
- […]
- 4:16 PM Ticket #3436 (During undo, self._positions is None) closed by
- fixed
- 3:27 PM Ticket #3444 (crash when closing Rotamers dialog) created by
- […]
- 3:12 PM Ticket #3443 (Registration error: 'year' is an invalid keyword argument for __new__()) created by
- […]
- 10:43 AM Ticket #3439 (fetch timeout) closed by
- fixed: Fixed. Catch socket.timeout during fetch and report a simple error …
- 9:52 AM Ticket #3442 (Permission denied updating config files on Windows) created by
- […]
- 9:18 AM Ticket #3440 (fetch timeout) closed by
- duplicate: Duplicate of #3439
- 8:58 AM Ticket #3438 (Clipper: focal_set is None) closed by
- fixed: Hi Alexis, Glad Tristan could help you. You might also consider …
- 6:49 AM Ticket #3441 (somewhat unusual chain editing causes crash) created by
- […]
Jun 24, 2020:
- 7:15 PM Ticket #3440 (fetch timeout) created by
- […]
- 7:09 PM Ticket #3439 (fetch timeout) created by
- […]
- 5:58 PM Ticket #3438 (Clipper: focal_set is None) created by
- […]
- 5:31 PM ChangeLog edited by
- (diff)
- 2:55 PM Ticket #3433 (specifying nonexistent fasta file to "rna model" gives traceback) closed by
- fixed: Fixed. Now gives clear error message if sequence file is missing or …
- 2:11 PM Ticket #3432 (Atoms.transform trigger) reopened by
- Oh, I didn't know the Atoms.transform() method existed. Eric added …
- 10:57 AM Ticket #3437 (RFE: positions file include camera position) created by
- For my purposes, the positions file would be way more useful if it …
- 10:35 AM Ticket #3432 (Atoms.transform trigger) closed by
- fixed: There is a MODEL_POSITION_CHANGED trigger in core/models.py that seems …
- 9:41 AM Ticket #3436 (During undo, self._positions is None) created by
- […]
- 6:04 AM Ticket #3435 (2D molecule drawing) created by
- […]
- 3:18 AM Ticket #3434 (Problem writing command history) created by
- […]
Jun 23, 2020:
- 5:17 PM Ticket #3433 (specifying nonexistent fasta file to "rna model" gives traceback) created by
- […]
- 1:32 PM Ticket #3432 (Atoms.transform trigger) created by
- […]
Jun 22, 2020:
- 5:34 PM Ticket #3431 (Add Fedora to RPM list) created by
- As a whole, a Linux version (on Fedora 32), x64.rpm, of ChimeraX 1.1 …
- 5:30 PM Ticket #3430 (Support >4 character atom names) created by
- Formats such as mol2 can have >4 character atom names. To avoid …
- 3:09 PM Ticket #3429 (Registration bundle initialization failed at startup) created by
- Mike Schmid reports by email that at startup he got “Bundle …
- 2:15 PM Ticket #3425 (RFE: command to add C-terminal oxygens) closed by
- duplicate: Hmm, okay. Restricting AddH to a selection is ticket #2310.
- 9:26 AM Ticket #3428 (mmCIF not handling 'oversampling' arg) closed by
- fixed: When I ported to the new 'open', missed the fact that the keyword is …
- 5:23 AM Ticket #3428 (mmCIF not handling 'oversampling' arg) created by
- […]
Jun 21, 2020:
Jun 20, 2020:
- 5:40 PM Ticket #3426 (Windows display scaling bad GUI control sizes) created by
- […] Screenshot (1).png
- 4:06 AM Ticket #3425 (RFE: command to add C-terminal oxygens) created by
- […] add_oxt.py
Jun 19, 2020:
- 12:01 PM Ticket #3424 (Crash with trashed stack) created by
- […]
- 11:56 AM Ticket #3421 (view matrix camera: No module named 'chimerax.core.geometry') closed by
- fixed: Fixed. Missed a relative import of geometry module.
- 11:53 AM Ticket #3419 (Startup error with glGetFramebufferAttachmentParameteriv) closed by
- nonchimerax: ChimeraX does not run on Windows 7. As it says on the ChimeraX …
- 10:25 AM Ticket #3423 (Cannot save PIR) closed by
- fixed: Hi Andrea, Thanks for reporting this problem. It is fixed now and …
- 9:35 AM Ticket #3416 (Crash with trashed stack) closed by
- can't reproduce
- 1:37 AM Ticket #3423 (Cannot save PIR) created by
- […]
- 12:53 AM Ticket #3422 (XYZ files) created by
- […]
- 12:03 AM Ticket #3338 (Phenix mmCIF problems) closed by
- fixed: Changed ChimeraX to not try to give chains descriptions when mmcif_cid …
Jun 18, 2020:
- 11:54 PM Ticket #3421 (view matrix camera: No module named 'chimerax.core.geometry') created by
- […]
- 9:01 PM Ticket #3420 (Session restore error, 2d labels None) closed by
- fixed: Fixed. Session restore of state managers did not protect against …
- 8:56 PM Ticket #3420 (Session restore error, 2d labels None) created by
- […] prc.cxs
- 4:22 PM Ticket #3419 (Startup error with glGetFramebufferAttachmentParameteriv) created by
- […]
- 3:50 PM Ticket #3418 (RealSense camera freezes) created by
- […]
- 3:44 PM Ticket #3417 (labels don't work in headless mode) created by
- labels don't work because they're are using the GUI to get the font …
- 2:04 PM Ticket #3413 (Shorten Downloads web page) closed by
- fixed: done and svn-committed
- 10:33 AM Ticket #2828 (Rotamer dialog column sorting not numerical) closed by
- fixed: For now, just assume that items that look like numbers are numbers and …
- 10:32 AM Ticket #3416 (Crash with trashed stack) created by
- […]
Jun 17, 2020:
- 5:57 PM Ticket #3409 (Problem with locale when checking registration) closed by
- duplicate: I was under the misapprehension that there had already been a fix …
- 5:44 PM Ticket #3409 (Problem with locale when checking registration) reopened by
- 3:49 PM Ticket #2964 (Command-history change wipes command-entry text) closed by
- fixed
- 2:24 PM Ticket #3414 (Fails to start on Windows 10, corrupted ui preference file) created by
- ChimeraX fails to start on Windows 10 due to a corrupted ui …
- 2:10 PM Ticket #3168 (Support CHARMM/X-PLOR format PDB files) closed by
- fixed: "Fixed" in that segment IDs can be used instead of chain IDs if …
- 1:28 PM Ticket #3401 (Session save error after deleting a Structure) closed by
- fixed
- 12:20 PM Ticket #3411 (help command does not show browser for some abbreviated commands) closed by
- fixed: Fixed.
- 11:26 AM Ticket #3413 (Shorten Downloads web page) created by
- The ChimeraX Downloads web page does not show the table of downloads …
- 10:41 AM Ticket #3409 (Problem with locale when checking registration) closed by
- can't reproduce: I can't reproduce either of the problems you're having: blank graphics …
- 10:29 AM ChangeLog edited by
- (diff)
- 9:04 AM Ticket #3412 (Volume viewer: unexpected indentation) closed by
- duplicate
- 9:00 AM Ticket #3408 (Crash restoring session) closed by
- can't reproduce: Looks like a crash trying to draw the Qt interface (or maybe the main …
- 4:24 AM Ticket #3412 (Volume viewer: unexpected indentation) created by
- […]
Jun 16, 2020:
- 8:31 PM Ticket #3406 (Port IMOD model file reader) closed by
- fixed: Ported imod reader.
- 5:44 PM Ticket #3348 (Filled rings unusably slow on large structures) closed by
- fixed: So splitting ring-finding into sibling routines based on whether …
- 4:04 PM Ticket #3410 (segmentation surfaces: no attribute 'find_attribute') closed by
- fixed: Fixed. Code was trying to use find_attribute() method that is only …
- 4:02 PM Ticket #3411 (help command does not show browser for some abbreviated commands) created by
- […]
- 3:55 PM ChangeLog edited by
- (diff)
- 3:47 PM Ticket #3410 (segmentation surfaces: no attribute 'find_attribute') created by
- […]
- 3:22 PM Ticket #1891 (RFE: Blast Protein query sequence from text) closed by
- fixed: I'm interpreting this one as another case of "launch blast from …
- 3:18 PM Ticket #1930 (RFE: Blast Protein ability to use sequence from Sequence Viewer as query) closed by
- fixed: Sequence viewer's context menu now has an Info category from which the …
- 3:13 PM Ticket #2736 (all-same-value attribute coloring yields black instead of 'mid' color) closed by
- fixed: Fixed. Color byattribute uses a red/white/blue colormap with all 3 …
- 1:12 PM Ticket #2984 (AddH: N-linked glycans) closed by
- fixed: Fixed. Works in one pass now.
- 12:56 PM Ticket #3409 (Problem with locale when checking registration) created by
- […] full screen.zip
- 11:47 AM Ticket #3408 (Crash restoring session) created by
- […]
- 11:22 AM Ticket #3407 (Maximum common substructure) created by
- […]
- 11:08 AM Ticket #3404 (ChimeraX bug report submission) closed by
- fixed: Fixed in 04ec502b1. Only models that are displayed (have …
- 10:44 AM Ticket #2640 (Preference GUI not refreshed) closed by
- fixed: This seems to have "fixed itself" as of the 1.0 release.
- 10:32 AM Ticket #3405 (Orderable TmplAtom) closed by
- fixed: TmplAtom now sorts on name. In the next daily build.
- 9:57 AM Ticket #3406 (Port IMOD model file reader) created by
- Should be easy to port IMOD model file reader to ChimeraX. Might also …
- 9:19 AM Ticket #3402 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) closed by
- fixed: Hi Daniel, This problem was fixed the day after the version you have, …
- 7:22 AM Ticket #3405 (Orderable TmplAtom) created by
- […]
Jun 15, 2020:
- 5:42 PM Ticket #3404 (ChimeraX bug report submission) created by
- […] tiling fails.cxs
- 5:12 PM Ticket #3403 (Submit patch/bug report to Python/pip about problematic version number ...) created by
- According to pip/PEP docs, a requirement of 1.1 should be satisfied by …
- 5:08 PM Ticket #3393 (DICOM icon: 'MainWindow' object has no attribute 'folder_open_cb') closed by
- fixed: Fix will be in the next daily build
- 4:26 PM Ticket #3402 (Save dialog: wrapped C/C++ object of type SaveOptionsWidget has been ...) created by
- […]
- 4:10 PM Ticket #3367 (Save position matrices for subtomogram boxes) closed by
- fixed: Added "positions" file format. The positions file gives positions of …
- 3:35 PM Ticket #3399 (Session save error caused by deleted Structure) closed by
- duplicate: Simpler case reported in #3401. Just "delete #1" to close a structure …
- 3:34 PM Ticket #3401 (Session save error after deleting a Structure) created by
- […]
- 3:02 PM Ticket #3400 (Volume crop mouse mode moves in wrong direction) closed by
- fixed: Fixed. Face normal vector was transformed incorrectly as a point …
- 1:39 PM Ticket #3400 (Volume crop mouse mode moves in wrong direction) created by
- […]
- 1:04 PM Ticket #3399 (Session save error caused by deleted Structure) created by
- […]
- 11:22 AM Ticket #3361 (Clip in VR further from face) closed by
- fixed: I added vr command options nearClipDistance and farClipDistance …
- 10:42 AM Ticket #3394 (CUDA problem: Error initializing CUDA: CUDA_ERROR_UNKNOWN (999)) closed by
- nonchimerax: Great to hear it! Will go ahead and close this, since it seems most …
- 10:39 AM Ticket #3398 (debugging output logged) closed by
- fixed
- 10:31 AM Ticket #3398 (debugging output logged) created by
- […]
- 8:46 AM Ticket #3397 (ChimeraX: mmcif connectivity lost in some chains; OK in Coot  + PDB ...) created by
- […] [[Image(...)]] OK_in_coot.mmcif …
- 6:42 AM Ticket #3396 (Saving mmCIF: 'software' is None) created by
- […]
- 1:03 AM Ticket #3395 (Crash showing tooltip text) created by
- […]
Jun 14, 2020:
- 5:22 PM Ticket #3394 (CUDA problem: Error initializing CUDA: CUDA_ERROR_UNKNOWN (999)) created by
- […]
Jun 13, 2020:
- 7:33 AM Ticket #3393 (DICOM icon: 'MainWindow' object has no attribute 'folder_open_cb') created by
- […]
Jun 12, 2020:
- 4:57 PM Ticket #3371 (Make "usage open" report some option info) closed by
- fixed: Since 1.1 is going to be "sooner rather than later", I decided to put …
- 4:31 PM Ticket #3285 (Slow graphics updates) closed by
- fixed: Well, fixed with the crudest trigger-blocking solution (and made that …
- 3:46 PM Ticket #3225 (Failure reading DCD: unexpected end of data) closed by
- fixed: In the remarks section of the DCD, the parts past the null in the …
- 10:09 AM Ticket #3389 (MRC file: file size too small for grid size) closed by
- nonchimerax: This user has no luck. There graphics provides only OpenGL 2.1 so …
- 8:52 AM Ticket #3392 (defattr command) created by
- as per summary
- 8:47 AM Ticket #3391 ("defattr" format for 'save' command) created by
- Some of the options analogous to "color byattr"
Jun 11, 2020:
- 11:29 PM Ticket #3390 (Session save: cycle detected) created by
- […]
- 8:16 PM Ticket #3389 (MRC file: file size too small for grid size) created by
- […]
- 6:10 PM Ticket #3388 (MatchMaker tool) created by
- as per summary
- 6:08 PM Ticket #3387 (Render By Attribute tool) created by
- As per summary
- 6:03 PM Ticket #3386 (Make header values available as residue attributes) created by
- As per summary
- 10:31 AM Ticket #3385 (Don't spam log with volume color change commands) created by
- […]
- 10:28 AM Ticket #3384 (Preserve volume per-vertex colors in sessions) created by
- […]
- 10:24 AM Ticket #3382 (Map replacement results in session-save failure: self.positions is None) closed by
- fixed: Fixed in ChimeraX 1.1, not in 1.0. We plan to make a ChimeraX 1.0 …
- 2:28 AM Ticket #3383 (Redirect Python logging to the ChimeraX log) created by
- […]
- 2:06 AM Ticket #3382 (Map replacement results in session-save failure: self.positions is None) created by
- […]
Jun 10, 2020:
- 6:05 PM Ticket #3381 (RFE: fatter lines in Side View on hi-res displays) created by
- The Side View lines (small square, diverging lines, clip-plane lines) …
- 11:27 AM Ticket #3379 (Volume tilted slab to plane: glClear invalid framebuffer operation) closed by
- fixed: Fixed. Problem was that 3D texture for single-plane region in tilted …
- 11:04 AM Ticket #3380 (Read compressed cif files) created by
- I was wondering if it would be possible to add option for chimerax to …
Jun 9, 2020:
- 10:41 PM Ticket #3378 (Closing multichannel volume, TypeError: object of type 'NoneType' has ...) closed by
- fixed: Fixed. Change to Models class caused it to try to remove and already …
- 10:37 PM Ticket #3379 (Volume tilted slab to plane: glClear invalid framebuffer operation) created by
- […]
- 10:37 PM Ticket #3378 (Closing multichannel volume, TypeError: object of type 'NoneType' has ...) created by
- […]
- 10:37 PM Ticket #3377 (Template mismatch errors) created by
- […]
- 10:19 AM Ticket #3374 (Touch event key modifiers) closed by
- fixed: All seems to be working now.
Jun 8, 2020:
- 5:25 PM Ticket #3266 (RFE: have matchmaker maintain original SS assignments) closed by
- fixed: Fixed. Fix available in next daily build as 'keepComputedSs' keyword, …
- 5:11 PM Ticket #3376 (Error closing submodel and parent model in same close command.) closed by
- fixed: Fixed. A deleted model was not being deleted from parent. This bug …
- 4:24 PM Ticket #3376 (Error closing submodel and parent model in same close command.) created by
- […]
- 2:23 PM Ticket #2435 (Select menu protein, nucleic acid, ribose should be under Chemistry ...) closed by
- fixed: Fixed. Only available in the daily build (until 1.1 release)
- 1:16 PM Ticket #3375 (Toolshed uninstall failure) created by
- […]
- 4:14 AM Ticket #3374 (Touch event key modifiers) created by
- […]
Jun 5, 2020:
- 7:03 PM ChangeLog edited by
- (diff)
- 6:50 PM ChangeLog edited by
- (diff)
- 6:26 PM ChangeLog edited by
- (diff)
- 6:14 PM Ticket #3373 (Opening large RNA takes 90 seconds instead of 2 seconds due to ...) created by
- […]
- 6:01 PM Ticket #3105 (addh wrong hydrogen name on glycosylated Asn residues) closed by
- fixed: Fixed in the next daily build. Might put an AddH 1.0.1 bundle on the …
- 5:50 PM Ticket #3372 (Writing mmCIF file takes 35 minutes) created by
- […] sarscov2_rna.cif
- 5:45 PM Ticket #3371 (Make "usage open" report some option info) created by
- […]
- 4:36 PM Ticket #3358 (Remove deprecated chimerax.core.geometry imports) closed by
- fixed: Fixed in ChimeraX 1.1 (not 1.0).
- 4:10 PM Ticket #3359 (map/surface color is None) closed by
- fixed: Fixed. Made volume viewer handle situation where surface is closed. …
- 3:35 PM Ticket #3162 (Incorrect commands easily lost) closed by
- fixed: Failed commands no longer get auto-selected, so it is not easy to …
- 3:07 PM Ticket #3370 (split command ValueError: Tried to add model with incompatible id) closed by
- fixed: Fixed. Split command was adding child models to a new grouping model. …
- 2:58 PM Ticket #3370 (split command ValueError: Tried to add model with incompatible id) created by
- […]
Jun 4, 2020:
- 8:33 PM Ticket #3360 (Ribbon index error) closed by
- duplicate: Fixed 1.5 months ago.
- 8:20 PM Ticket #3369 (Make bug reporter to check if bug already fixed) created by
- Users often report the same fixed bug many times. It would save the …
- 8:05 PM Ticket #3368 (API needed for saving non-State classes) created by
- Currently geometry.Place and graphics.Drawing, graphics.View, ... do …
- 7:56 PM Ticket #3364 (Surface dust restored from session not saved in session) closed by
- fixed: Fixed. There were two bugs. When a session with hide dust was …
- 7:07 PM Ticket #3367 (Save position matrices for subtomogram boxes) created by
- Would like to be able to write out the position matrices for …
- 7:01 PM Ticket #3366 (Report color by height settings) created by
- Want a command to report current color by height settings, useful when …
- 6:59 PM Ticket #3365 (Report surface dust settings) created by
- Would like a command to report the current surface dust settings, …
- 6:57 PM Ticket #3364 (Surface dust restored from session not saved in session) created by
- […]
- 6:47 PM Ticket #3363 (Visually distinguish old log output from new) created by
- […]
- 6:42 PM Ticket #3362 (Run command from VR wand button press) created by
- Would like to be able to click a VR button to run a command such as …
- 6:31 PM Ticket #3361 (Clip in VR further from face) created by
- When moving around inside tomograms with surface display it would help …
- 5:56 PM Ticket #3360 (Ribbon index error) created by
- […]
- 5:10 PM Ticket #3359 (map/surface color is None) created by
- […]
- 5:01 PM Ticket #3358 (Remove deprecated chimerax.core.geometry imports) created by
- After geometry was moved out of core, temporary code was put in …
- 4:01 PM Ticket #3356 (Test clean startup with updated bundle) closed by
- fixed: A fake 1.1 version of the Help bundle is on the preview website. …
- 3:49 PM Ticket #3352 (Disable toolshed bundle update notification mechanism) closed by
- fixed
- 1:45 PM Ticket #3357 (Add installed version numbers to the bug reporter) created by
- 1:40 PM Ticket #3356 (Test clean startup with updated bundle) created by
- Greg will put a new version of help viewer on preview site
- 1:37 PM Ticket #3355 (Open ticket with UCSF IT to open up pre-release toolshed to outside ...) created by
- 1:37 PM Milestone 1.0 completed
- == Overview * Useful subset of Chimera features * Focus on …
- 1:35 PM Ticket #3354 (Test update of bundles with binary (e.g. C++) components) created by
- Atomic is a good example
- 1:34 PM Ticket #3353 (Flatten bundle hierarchy) created by
- Atomic and Volume are good examples of this.
- 1:32 PM Ticket #3352 (Disable toolshed bundle update notification mechanism) created by
- 9:44 AM Ticket #3351 (ribbon pick: index is out of bounds for axis) closed by
- duplicate: Fixed a month and a half ago.
- 12:16 AM Ticket #3351 (ribbon pick: index is out of bounds for axis) created by
- […]
Jun 3, 2020:
- 5:41 PM Ticket #3348 (Filled rings unusably slow on large structures) reopened by
- 5:32 PM Ticket #3327 (mmCIF output problem for inserted residues) closed by
- fixed: Okay, fixed AFAICT. My test case with a peptide stitched into a …
- 4:40 PM Ticket #3233 (Remove bogus 1-star reviews) closed by
- fixed: No response from Tempy contact. Went ahead and deleted the ratings …
- 4:36 PM Ticket #3348 (Filled rings unusably slow on large structures) closed by
- fixed: Adding a add_shapes API, to add multiple shapes at one time, changed …
- 12:33 PM Ticket #3350 (Better information for bundle requirement problems) created by
- […]
- 8:56 AM Ticket #3349 (Problem handling bad template) closed by
- fixed: While this particular error has been fixed for a while, I'd like to …
- 12:43 AM Ticket #3349 (Problem handling bad template) created by
- […]
Jun 2, 2020:
- 4:29 PM Ticket #3348 (Filled rings unusably slow on large structures) created by
- […]
- 12:17 PM Ticket #3347 (Session saving creating arbitrary class instances) closed by
- fixed: isinstance is used throughout the session saving and serialization …
- 10:19 AM Ticket #3346 (config file is all nulls) closed by
- can't reproduce: Not sure why this happened. But you recover by deleting …
- 8:18 AM Ticket #3347 (Session saving creating arbitrary class instances) created by
- […]
- 2:50 AM Ticket #3346 (config file is all nulls) created by
- […]
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